Psyllid ID: psy18160

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370---
Protein Sequence
YVLIHGTCGSTLQTIEYALTVRVLKLKTQIPKGNWFSMMSGKRQSDCMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTMANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMMIFGCGNVPG
Secondary Structure (PSIPRED)
cEEEEccccccccEEEEEEEEEEEEEEEccccccccccccccccccEEEEEEEcccccccEEEEEEEEcccccccEEEEEEEEEEccEEEEEEEEEccccccccccccHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccEEEEEEEcccccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccHHHEEEHHcccccccccccccEEEEccccEEEEEcccHHHHHHHHHHHHHccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccHHHHHHHHHcccEEEccccccccccEEHcccccHHHHHEEEEEEcccccEEEEEEcccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccEEEEEEEcHHcHHHHccccHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHcccHcccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccEcccccccHHEEEEEEEEEEccccccHHHHHHHHHHcccccccccccccccccccEEEEcccccccccccccHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
yvlihgtcgstLQTIEYALTVRVLKLKtqipkgnwfsmmsgkrqsDCMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITqtvclddvTIRFEIWdtagqeryhtlapmyyRNAQAAIIVYDITNQDTFGRAKSWVKELqrmappnidtfGRAKSWVKELQRMAPPNIVIALAgnkadlptsrrcveysegeayaeenGLLFMETSAKTAMNVNEIFVEIAKKlpkkevnngqggrrlvetaeapktsnccntqfvqckyksSIHILTMansnnsnsngrggriqrpndqtQAKICQYKLVLLGESAVGKSSLVLRFVRgqfheyqestiggecqsshsisfsmptknrlnnnvpiTFVWVIMMIFGCGNVPG
Flexible Loop (DISEMBL)
yvlihgtcgstlqtIEYALTVRVLKLKTqipkgnwfsmmsgkrQSDCMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELqrmappnidTFGRAKSWVKELQRMAPPNIVIAlagnkadlptSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAkklpkkevnngqgGRRLvetaeapktsnccntQFVQCKYKSSIHILTMAnsnnsnsngRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMMIFGCGNVPG
Low Complexity Region (SEG)
YVLIHGTCGSTLQTIEYALTVRVLKLKTQIPKGNWFSMMSGKRQSDCMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTMAnsnnsnsngrggrIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMMIFGCGNVPG
Disordered region (IsUnstruct)
*VLIHGTCGSTLQTIEYALTVRVLKLKTQIPKGNWFSMMSGKRQSDCMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL***********************SNCCNTQFVQCKYKSSIHILTM***********************AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGEC************KNRLNNNVPITFVWVIMMIFGCGN***
Disordered Region (DISOPRED)
YVLIHGTCGSTLQTIEYALTVRVLKLK*****************SDCMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIA****************************************************************************YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMMIFGCGNVP*
Disordered Region (DISEMBL)
YVLIHGTCGSTLQTIEYALTVRVLKLKTQIPKGNWFSMMSGKRQSDCMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTMANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMMIFGCGNVPG
Disordered Region (DISPRO)
YVLIHGTCGSTLQTIEYALTVRVLKLKTQIPKGNWFSMMSGKRQSDCMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK**************************QFVQCKYKSSIHILTMANSN*********RIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMMIFGCGNVP*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YVLIHGTCGSTLQTIEYALTVRVLKLKTQIPKGNWFSMMSGKRQSDCMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTMANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMMIFGCGNVPG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	373	2.2.26 [Sep-21-2011]
P51147	216	Ras-related protein Rab-5	yes	N/A	0.434	0.75	0.606	1e-56
Q58DS9	216	Ras-related protein Rab-5	yes	N/A	0.434	0.75	0.611	1e-56
P35278	216	Ras-related protein Rab-5	yes	N/A	0.434	0.75	0.606	2e-56
Q98932	216	Ras-related protein Rab-5	yes	N/A	0.434	0.75	0.604	2e-56
Q5R7L7	216	Ras-related protein Rab-5	yes	N/A	0.434	0.75	0.606	3e-56
P51148	216	Ras-related protein Rab-5	yes	N/A	0.434	0.75	0.606	3e-56
Q5ZHW4	215	Ras-related protein Rab-5	no	N/A	0.434	0.753	0.598	1e-55
Q5RBG1	215	Ras-related protein Rab-5	no	N/A	0.434	0.753	0.598	2e-55
P61021	215	Ras-related protein Rab-5	no	N/A	0.434	0.753	0.598	2e-55
P61020	215	Ras-related protein Rab-5	no	N/A	0.434	0.753	0.598	2e-55

>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1

 Score =  220 bits (561), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 133/193 (68%), Gaps = 31/193 (16%)

Query: 69  FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y  S   AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 46  FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 105

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
            DTF RAK+WVKEL                     QR A PNIVIALAGNKADL  S+R 
Sbjct: 106 TDTFARAKNWVKEL---------------------QRQASPNIVIALAGNKADL-ASKRA 143

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG------GRRLV 239
           VE+ E +AYA++N LLFMETSAKTAMNVNEIF+ IAKKLPK E  N  G      G  L 
Sbjct: 144 VEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPSRNRGVDLQ 203

Query: 240 ETAEAPKTSNCCN 252
           E + A ++  C N
Sbjct: 204 ENSPASRSQCCSN 216

Protein transport. Probably involved in vesicular traffic.
Canis familiaris (taxid: 9615)

>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1

 Score =  220 bits (561), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/193 (61%), Positives = 132/193 (68%), Gaps = 31/193 (16%)

Query: 69  FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y  S   AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 46  FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 105

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
            DTF RAK+WVKEL                     QR A PNIVIALAGNKADL  S+R 
Sbjct: 106 TDTFARAKNWVKEL---------------------QRQASPNIVIALAGNKADL-ASKRA 143

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG------GRRLV 239
           VE+ E +AYAE+N LLFMETSAKTAMNVNEIF+ IAKKLPK E  N  G      G  L 
Sbjct: 144 VEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQ 203

Query: 240 ETAEAPKTSNCCN 252
           E   A ++  C N
Sbjct: 204 ENNPASRSQCCSN 216

Protein transport. Probably involved in vesicular traffic.

Bos taurus (taxid: 9913)

>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2

 Score =  219 bits (559), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 133/193 (68%), Gaps = 31/193 (16%)

Query: 69  FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y  S   AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 46  FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 105

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
            DTF RAK+WVKEL                     QR A PNIVIALAGNKADL  S+R 
Sbjct: 106 TDTFARAKNWVKEL---------------------QRQASPNIVIALAGNKADL-ASKRA 143

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG------GRRLV 239
           VE+ E +AYA++N LLFMETSAKTAMNVNEIF+ IAKKLPK E  N  G      G  L 
Sbjct: 144 VEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRTRGVDLQ 203

Query: 240 ETAEAPKTSNCCN 252
           E+  A ++  C N
Sbjct: 204 ESNPASRSQCCSN 216

Protein transport. Probably involved in vesicular traffic.

Mus musculus (taxid: 10090)

>sp|Q98932|RAB5C_CHICK Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1

 Score =  219 bits (559), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 135/192 (70%), Gaps = 30/192 (15%)

Query: 69  FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y  S   AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 46  FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 105

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
            DTF RAK+WVKEL                     QR A PNIVIALAGNKADL T +R 
Sbjct: 106 TDTFVRAKNWVKEL---------------------QRQASPNIVIALAGNKADLAT-KRA 143

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGG---RRLVETA 242
           V++ + + YA++N LLFMETSAKTAMNVNEIF+ IAKKLPK E  N  GG    R+V+  
Sbjct: 144 VDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAPGGPGRNRVVDLQ 203

Query: 243 EA--PKTSNCCN 252
           E+  P  S CC+
Sbjct: 204 ESSQPSRSQCCS 215

Protein transport. Probably involved in vesicular traffic.

Gallus gallus (taxid: 9031)

>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1

 Score =  219 bits (557), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 132/193 (68%), Gaps = 31/193 (16%)

Query: 69  FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y  S   AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 46  FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 105

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
            DTF RAK+WVKEL                     QR A PNIVIALAGNKADL  S+R 
Sbjct: 106 TDTFARAKNWVKEL---------------------QRQASPNIVIALAGNKADL-ASKRA 143

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG------GRRLV 239
           VE+ E +AYA++N LLFMETSAKTAMNVNEIF+ IAKKLPK E  N  G      G  L 
Sbjct: 144 VEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQ 203

Query: 240 ETAEAPKTSNCCN 252
           E   A ++  C N
Sbjct: 204 ENNPASRSQCCSN 216

Protein transport. Probably involved in vesicular traffic.

Pongo abelii (taxid: 9601)

>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2

 Score =  219 bits (557), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 132/193 (68%), Gaps = 31/193 (16%)

Query: 69  FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y  S   AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 46  FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 105

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
            DTF RAK+WVKEL                     QR A PNIVIALAGNKADL  S+R 
Sbjct: 106 TDTFARAKNWVKEL---------------------QRQASPNIVIALAGNKADL-ASKRA 143

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG------GRRLV 239
           VE+ E +AYA++N LLFMETSAKTAMNVNEIF+ IAKKLPK E  N  G      G  L 
Sbjct: 144 VEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQ 203

Query: 240 ETAEAPKTSNCCN 252
           E   A ++  C N
Sbjct: 204 ENNPASRSQCCSN 216

Protein transport. Probably involved in vesicular traffic.

Homo sapiens (taxid: 9606)

>sp|Q5ZHW4|RAB5B_CHICK Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1

 Score =  217 bits (553), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 136/192 (70%), Gaps = 30/192 (15%)

Query: 69  FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y  S   AAF+TQ+VCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 45  FHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 104

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
           Q+TF RAK+WVKE                     LQR A P+IVIALAGNKADL  S+R 
Sbjct: 105 QETFARAKTWVKE---------------------LQRQASPSIVIALAGNKADL-ASKRM 142

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE--VNNGQGGR-RLVETA 242
           VEY E +AYA++N LLFMETSAKTAMNVN++F+ IAKKLPK E    +G  GR R V+  
Sbjct: 143 VEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQSTSGAAGRSRGVDLH 202

Query: 243 EAPK--TSNCCN 252
           E  +   S CC+
Sbjct: 203 EQTQQNKSQCCS 214

Protein transport. Probably involved in vesicular traffic.

Gallus gallus (taxid: 9031)

>sp|Q5RBG1|RAB5B_PONAB Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1

 Score =  216 bits (551), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 136/192 (70%), Gaps = 30/192 (15%)

Query: 69  FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y  S   AAF+TQ+VCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 45  FHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 104

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
           Q+TF RAK+WVKE                     LQR A P+IVIALAGNKADL  ++R 
Sbjct: 105 QETFARAKTWVKE---------------------LQRQASPSIVIALAGNKADL-ANKRM 142

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN--GQGGR-RLVETA 242
           VEY E +AYA++N LLFMETSAKTAMNVN++F+ IAKKLPK E  N  G  GR R V+  
Sbjct: 143 VEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLH 202

Query: 243 EAPK--TSNCCN 252
           E  +   S CC+
Sbjct: 203 EQSQQNKSQCCS 214

Protein transport. Probably involved in vesicular traffic.

Pongo abelii (taxid: 9601)

>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1

 Score =  216 bits (551), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 136/192 (70%), Gaps = 30/192 (15%)

Query: 69  FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y  S   AAF+TQ+VCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 45  FHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 104

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
           Q+TF RAK+WVKE                     LQR A P+IVIALAGNKADL  ++R 
Sbjct: 105 QETFARAKTWVKE---------------------LQRQASPSIVIALAGNKADL-ANKRM 142

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN--GQGGR-RLVETA 242
           VEY E +AYA++N LLFMETSAKTAMNVN++F+ IAKKLPK E  N  G  GR R V+  
Sbjct: 143 VEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLH 202

Query: 243 EAPK--TSNCCN 252
           E  +   S CC+
Sbjct: 203 EQSQQNKSQCCS 214

Protein transport. Probably involved in vesicular traffic.

Mus musculus (taxid: 10090)

>sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1

 Score =  216 bits (551), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 136/192 (70%), Gaps = 30/192 (15%)

Query: 69  FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y  S   AAF+TQ+VCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 45  FHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 104

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
           Q+TF RAK+WVKE                     LQR A P+IVIALAGNKADL  ++R 
Sbjct: 105 QETFARAKTWVKE---------------------LQRQASPSIVIALAGNKADL-ANKRM 142

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN--GQGGR-RLVETA 242
           VEY E +AYA++N LLFMETSAKTAMNVN++F+ IAKKLPK E  N  G  GR R V+  
Sbjct: 143 VEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLH 202

Query: 243 EAPK--TSNCCN 252
           E  +   S CC+
Sbjct: 203 EQSQQNKSQCCS 214

Protein transport. Probably involved in vesicular traffic.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	373
357627683	209	small GTP binding protein RAB5 [Danaus p	0.431	0.770	0.629	1e-60
189237939	215	PREDICTED: similar to small GTP binding	0.431	0.748	0.628	7e-58
307203579	214	Ras-related protein Rab-5C [Harpegnathos	0.428	0.747	0.630	8e-58
427786891	218	hypothetical protein [Rhipicephalus pulc	0.431	0.738	0.621	2e-57
307189232	214	Ras-related protein Rab-5C [Camponotus f	0.428	0.747	0.625	3e-57
332017090	214	Ras-related protein Rab-5C [Acromyrmex e	0.428	0.747	0.625	3e-57
242006074	215	GTP-binding nuclear protein RAN1, putati	0.431	0.748	0.617	4e-57
340718353	214	PREDICTED: ras-related protein Rab-5C-li	0.428	0.747	0.625	7e-57
380019933	214	PREDICTED: ras-related protein Rab-5C-li	0.428	0.747	0.625	9e-57
156553974	213	PREDICTED: ras-related protein Rab-5A-li	0.428	0.751	0.625	1e-56

>gi|357627683|gb|EHJ77299.1| small GTP binding protein RAB5 [Danaus plexippus]

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/186 (62%), Positives = 142/186 (76%), Gaps = 25/186 (13%)

Query: 69  FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y  S   AAF+TQT+CLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 45  FHEYQESTIGAAFLTQTLCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 104

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
           QDTFGRAK+WVKE                     LQR A P+IVIALAGNK+DL  ++R 
Sbjct: 105 QDTFGRAKNWVKE---------------------LQRQASPSIVIALAGNKSDL-AAKRM 142

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAP 245
           VE+ E +AYA+ENGLLFMETSAKTAMNVN+IF+ IA KLPK EV++G  G R++  A+AP
Sbjct: 143 VEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANKLPKSEVSSGGAGTRVLNDADAP 202

Query: 246 KTSNCC 251
           ++S+CC
Sbjct: 203 RSSSCC 208

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237939|ref|XP_001813105.1| PREDICTED: similar to small GTP binding protein RAB5 [Tribolium castaneum] gi|270008253|gb|EFA04701.1| Rab-protein 5 [Tribolium castaneum]

 Score =  230 bits (587), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 135/191 (70%), Gaps = 30/191 (15%)

Query: 69  FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y  S   AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 46  FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 105

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
           QDTFGRAK+WVKELQ                     R A PNIVIALAGNK DL  ++R 
Sbjct: 106 QDTFGRAKTWVKELQ---------------------RQASPNIVIALAGNKQDLA-NKRM 143

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG----GRRLVET 241
           VE+ E + YA+ENGLLFMETSAKTAMNVN+IF+ IAKKLPK E    QG    GRRL E 
Sbjct: 144 VEFEEAQTYADENGLLFMETSAKTAMNVNDIFLAIAKKLPKNEQATAQGASGQGRRLAEG 203

Query: 242 AEAPKTS-NCC 251
               K + NCC
Sbjct: 204 DTGAKAAGNCC 214

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203579|gb|EFN82612.1| Ras-related protein Rab-5C [Harpegnathos saltator]

 Score =  230 bits (587), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 140/192 (72%), Gaps = 32/192 (16%)

Query: 69  FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y  S   AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 45  FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 104

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
           QDTF RA++WVKE                     LQR A P+IVIALAGNKADL  ++R 
Sbjct: 105 QDTFSRAQTWVKE---------------------LQRQASPSIVIALAGNKADLA-NKRV 142

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN-----NGQGGRRLVE 240
           VEY E + YA+ENGLLFMETSAKTAMNVN+IF+ IAKKLPK E +     +GQ GRRLVE
Sbjct: 143 VEYDEAQTYADENGLLFMETSAKTAMNVNDIFLAIAKKLPKNEQSGNASTSGQ-GRRLVE 201

Query: 241 T-AEAPKTSNCC 251
           +  +   TSNCC
Sbjct: 202 SDGQKAATSNCC 213

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427786891|gb|JAA58897.1| hypothetical protein [Rhipicephalus pulchellus]

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 120/193 (62%), Positives = 136/193 (70%), Gaps = 32/193 (16%)

Query: 69  FYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y      AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 46  FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 105

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
           QDTFGRAK+WVKE                     LQR A P+IVIALAGNKADL  S+R 
Sbjct: 106 QDTFGRAKTWVKE---------------------LQRQASPSIVIALAGNKADL-ASKRA 143

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE-----VNNGQG--GRRL 238
           VE  E +AY+EENGLLFMETSAKTAMNVN+IF+ IAKKLPK E     V  G    GRR 
Sbjct: 144 VELEEAQAYSEENGLLFMETSAKTAMNVNDIFLAIAKKLPKTEQGTSAVGGGASGQGRRG 203

Query: 239 VETAEAPKTSNCC 251
           V+ +E P+ S  C
Sbjct: 204 VDLSEHPQQSGGC 216

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189232|gb|EFN73680.1| Ras-related protein Rab-5C [Camponotus floridanus] gi|322784961|gb|EFZ11732.1| hypothetical protein SINV_10350 [Solenopsis invicta]

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 139/192 (72%), Gaps = 32/192 (16%)

Query: 69  FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y  S   AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 45  FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 104

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
           QDTF RA++WVKE                     LQR A P+IVIALAGNKADL  ++R 
Sbjct: 105 QDTFSRAQTWVKE---------------------LQRQASPSIVIALAGNKADLA-NKRV 142

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN-----NGQGGRRLVE 240
           VEY E + YA+ENGLLFMETSAKTAMNVN+IF+ IAKKLPK E +     +GQ GRRLVE
Sbjct: 143 VEYDEAQTYADENGLLFMETSAKTAMNVNDIFLAIAKKLPKNEQSGSASTSGQ-GRRLVE 201

Query: 241 T-AEAPKTSNCC 251
           +  +   T NCC
Sbjct: 202 SDGQKAATGNCC 213

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017090|gb|EGI57889.1| Ras-related protein Rab-5C [Acromyrmex echinatior]

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 139/192 (72%), Gaps = 32/192 (16%)

Query: 69  FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y  S   AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 45  FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 104

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
           QDTF RA++WVKE                     LQR A P+IVIALAGNKADL  ++R 
Sbjct: 105 QDTFSRAQTWVKE---------------------LQRQASPSIVIALAGNKADLA-NKRV 142

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN-----NGQGGRRLVE 240
           VEY E + YA+ENGLLFMETSAKTAMNVN+IF+ IAKKLPK E +     +GQ GRRLVE
Sbjct: 143 VEYDEAQTYADENGLLFMETSAKTAMNVNDIFLAIAKKLPKNEQSGSASTSGQ-GRRLVE 201

Query: 241 T-AEAPKTSNCC 251
           +  +   T NCC
Sbjct: 202 SDGQKAATGNCC 213

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006074|ref|XP_002423881.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus corporis] gi|212507127|gb|EEB11143.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus corporis]

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 116/188 (61%), Positives = 133/188 (70%), Gaps = 27/188 (14%)

Query: 69  FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
           F      AAF+TQT+C DD+T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDI N DT
Sbjct: 49  FQESTIGAAFLTQTICDDDLTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIQNMDT 108

Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
           FG+AKSWVKEL                     QR A PNIVIALAGNKADL + +R VE 
Sbjct: 109 FGKAKSWVKEL---------------------QRHASPNIVIALAGNKADL-SDKRMVET 146

Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG----GRRLVETAEA 244
            E +AYA+++GLLFMETSAKTAMNVNEIF+ IAKKLPK E   G G    GRRLVE  + 
Sbjct: 147 DEAQAYAQDHGLLFMETSAKTAMNVNEIFLAIAKKLPKNEQAGGAGTSGQGRRLVEGGDG 206

Query: 245 PKTS-NCC 251
            K + NCC
Sbjct: 207 QKAAGNCC 214

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718353|ref|XP_003397633.1| PREDICTED: ras-related protein Rab-5C-like [Bombus terrestris] gi|350401655|ref|XP_003486219.1| PREDICTED: ras-related protein Rab-5C-like [Bombus impatiens]

 Score =  227 bits (579), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 140/192 (72%), Gaps = 32/192 (16%)

Query: 69  FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y  S   AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 45  FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 104

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
           QDTF RA++WVKE                     LQR A P+IVIALAGNKADL +++R 
Sbjct: 105 QDTFVRAQTWVKE---------------------LQRQASPSIVIALAGNKADL-SNKRV 142

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN-----NGQGGRRLVE 240
           VE+ E + YA+ENGLLFMETSAKTAMNVN+IF+ IAKKLPK E +     +GQ GRRLVE
Sbjct: 143 VEFDEAQTYADENGLLFMETSAKTAMNVNDIFLAIAKKLPKNEQSGNASTSGQ-GRRLVE 201

Query: 241 T-AEAPKTSNCC 251
           T  +   T NCC
Sbjct: 202 TEGQKAATGNCC 213

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019933|ref|XP_003693855.1| PREDICTED: ras-related protein Rab-5C-like [Apis florea]

 Score =  226 bits (577), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 139/192 (72%), Gaps = 32/192 (16%)

Query: 69  FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y  S   AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 45  FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 104

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
           QDTF RA++WVKE                     LQR A P+IVIALAGNKADL  ++R 
Sbjct: 105 QDTFVRAQTWVKE---------------------LQRQASPSIVIALAGNKADLA-NKRI 142

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN-----NGQGGRRLVE 240
           VE+ E + YA+ENGLLFMETSAKTAMNVN+IF+ IAKKLPK E +     +GQ GRRLVE
Sbjct: 143 VEFDEAQTYADENGLLFMETSAKTAMNVNDIFLAIAKKLPKNEQSGSASTSGQ-GRRLVE 201

Query: 241 T-AEAPKTSNCC 251
           T  +   T NCC
Sbjct: 202 TEGQKAATGNCC 213

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156553974|ref|XP_001602993.1| PREDICTED: ras-related protein Rab-5A-like isoform 1 [Nasonia vitripennis] gi|345492181|ref|XP_003426794.1| PREDICTED: ras-related protein Rab-5A-like isoform 2 [Nasonia vitripennis] gi|345492184|ref|XP_003426795.1| PREDICTED: ras-related protein Rab-5A-like isoform 3 [Nasonia vitripennis]

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 139/192 (72%), Gaps = 32/192 (16%)

Query: 69  FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ Y  S   AAF+TQTVCLD+ T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 44  FHEYQESTIGAAFLTQTVCLDETTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 103

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
           QDTF RA +WVKE                     LQR A P+IVIALAGNKADL  ++R 
Sbjct: 104 QDTFMRATTWVKE---------------------LQRQASPSIVIALAGNKADLG-NKRV 141

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE-----VNNGQGGRRLVE 240
           VE+ E +AYA+ENGLLFMETSAKTAMNVN+IF+ IAKKLPK E       +GQ GRRLVE
Sbjct: 142 VEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIAKKLPKNEQAGNASTSGQ-GRRLVE 200

Query: 241 T-AEAPKTSNCC 251
           +  + P T NCC
Sbjct: 201 SEGQKPATGNCC 212

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	373
UNIPROTKB|Q5ZIP7	215	RAB5A "Uncharacterized protein	0.431	0.748	0.589	1.5e-49
ZFIN|ZDB-GENE-030131-139	216	rab5aa "RAB5A, member RAS onco	0.431	0.745	0.568	2.3e-48
RGD|1307095	232	Rab5c "RAB5C, member RAS oncog	0.458	0.737	0.593	2.1e-45
GENEDB_PFALCIPARUM|PFA0335w	214	Rab5c "Rab5c, GTPase" [Plasmod	0.193	0.336	0.613	1.6e-39
UNIPROTKB|Q8I274	214	Rab5c "Rab5c, GTPase" [Plasmod	0.193	0.336	0.613	1.6e-39
UNIPROTKB|Q58DS9	216	RAB5C "Ras-related protein Rab	0.284	0.490	0.678	4.2e-31
UNIPROTKB|F2Z560	216	RAB5C "Uncharacterized protein	0.284	0.490	0.678	4.2e-31
MGI|MGI:105306	216	Rab5c "RAB5C, member RAS oncog	0.284	0.490	0.669	4.2e-31
UNIPROTKB|Q98932	216	RAB5C "Ras-related protein Rab	0.284	0.490	0.633	4.2e-31
UNIPROTKB|F1NST3	216	RAB5C "Ras-related protein Rab	0.284	0.490	0.633	4.2e-31

UNIPROTKB|Q5ZIP7 RAB5A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 112/190 (58%), Positives = 132/190 (69%)

Query:    69 FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
             F      AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct:    48 FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 107

Query:   129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
             F RAK+WVKELQR A PNI                     VIALAGNKADL  ++R V++
Sbjct:   108 FARAKNWVKELQRQASPNI---------------------VIALAGNKADL-ANKRAVDF 145

Query:   189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN-GQGGRR-----LVETA 242
              E +AYA++N LLFMETSAKT+MNVNEIF+ IAKKLPK E  N G    R     L E  
Sbjct:   146 QEAQAYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNTGASSARGRGVDLTEPT 205

Query:   243 EAPKTSNCCN 252
             + PK S CC+
Sbjct:   206 QPPK-SQCCS 214

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0045921 "positive regulation of exocytosis" evidence=IEA

GO:0051489 "regulation of filopodium assembly" evidence=IEA

GO:2000286 "receptor internalization involved in canonical Wnt receptor signaling pathway" evidence=IEA

ZFIN|ZDB-GENE-030131-139 rab5aa "RAB5A, member RAS oncogene family, a" [Danio rerio (taxid:7955)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 108/190 (56%), Positives = 135/190 (71%)

Query:    69 FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
             F      AAF+TQT+CLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct:    49 FQESTIGAAFLTQTLCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 108

Query:   129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
             F RAK+WVKELQR A PNI                     VIAL+GNKADL  ++R V++
Sbjct:   109 FARAKNWVKELQRQASPNI---------------------VIALSGNKADL-ANKRAVDF 146

Query:   189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE-----VNNGQG-GRRLVETA 242
              + ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK E      N+G+  G  L ETA
Sbjct:   147 QDAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKSEPQAAGANSGRSRGVDLTETA 206

Query:   243 EAPKTSNCCN 252
             + P  + CC+
Sbjct:   207 Q-PTKAPCCS 215

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

RGD|1307095 Rab5c "RAB5C, member RAS oncogene family" [Rattus norvegicus (taxid:10116)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 108/182 (59%), Positives = 125/182 (68%)

Query:    76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
             AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN DTF RAK+W
Sbjct:    56 AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNW 115

Query:   136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
             VKELQR A PNI     A +       +A    V     +    PT     E  E +AYA
Sbjct:   116 VKELQRQASPNI-VIALAGNKAD----LASKRAVEFFPCHLPSPPTLFLTSEL-EAQAYA 169

Query:   196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG--GR-RLVETAEA-PKT-SNC 250
             ++N LLFMETSAKTAMNVNEIF+ IAKKLPK E  N  G  GR R V+  E+ P + S C
Sbjct:   170 DDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQESNPASRSQC 229

Query:   251 CN 252
             C+
Sbjct:   230 CS 231

GO:0003674 "molecular_function" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GENEDB_PFALCIPARUM|PFA0335w Rab5c "Rab5c, GTPase" [Plasmodium falciparum (taxid:5833)]

 Score = 237 (88.5 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
 Identities = 46/75 (61%), Positives = 57/75 (76%)

Query:    69 FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
             FY Y  S   AAF+TQ + + + TI+FEIWDTAGQERY +LAPMYYR A AA+IVYDITN
Sbjct:    52 FYEYQESTIGAAFMTQLIDIGECTIKFEIWDTAGQERYRSLAPMYYRGASAAVIVYDITN 111

Query:   126 QDTFGRAKSWVKELQ 140
             + +F  AK W+ EL+
Sbjct:   112 KKSFEGAKGWIHELK 126

GO:0003924 "GTPase activity" evidence=ISS

UNIPROTKB|Q8I274 Rab5c "Rab5c, GTPase" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 237 (88.5 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
 Identities = 46/75 (61%), Positives = 57/75 (76%)

Query:    69 FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
             FY Y  S   AAF+TQ + + + TI+FEIWDTAGQERY +LAPMYYR A AA+IVYDITN
Sbjct:    52 FYEYQESTIGAAFMTQLIDIGECTIKFEIWDTAGQERYRSLAPMYYRGASAAVIVYDITN 111

Query:   126 QDTFGRAKSWVKELQ 140
             + +F  AK W+ EL+
Sbjct:   112 KKSFEGAKGWIHELK 126

GO:0003924 "GTPase activity" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

UNIPROTKB|Q58DS9 RAB5C "Ras-related protein Rab-5C" [Bos taurus (taxid:9913)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 76/112 (67%), Positives = 85/112 (75%)

Query:   146 NIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMET 205
             N DTF RAK+WVKELQR A PNIVIALAGNKADL  S+R VE+ E +AYAE+N LLFMET
Sbjct:   105 NTDTFARAKNWVKELQRQASPNIVIALAGNKADL-ASKRAVEFQEAQAYAEDNSLLFMET 163

Query:   206 SAKTAMNVNEIFVEIAKKLPKKEVNNGQG--GR-RLVETAEA-PKT-SNCCN 252
             SAKTAMNVNEIF+ IAKKLPK E  N  G  GR R V+  E  P + S CC+
Sbjct:   164 SAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQENNPASRSQCCS 215

GO:0019003 "GDP binding" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F2Z560 RAB5C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 76/112 (67%), Positives = 85/112 (75%)

Query:   146 NIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMET 205
             N DTF RAK+WVKELQR A PNIVIALAGNKADL  S+R VE+ E +AYAE+N LLFMET
Sbjct:   105 NTDTFARAKNWVKELQRQASPNIVIALAGNKADL-ASKRAVEFQEAQAYAEDNSLLFMET 163

Query:   206 SAKTAMNVNEIFVEIAKKLPKKEVNNGQG--GR-RLVETAEA-PKT-SNCCN 252
             SAKTAMNVNEIF+ IAKKLPK E  N  G  GR R V+  E  P + S CC+
Sbjct:   164 SAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQENNPASRSQCCS 215

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

MGI|MGI:105306 Rab5c "RAB5C, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 75/112 (66%), Positives = 86/112 (76%)

Query:   146 NIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMET 205
             N DTF RAK+WVKELQR A PNIVIALAGNKADL  S+R VE+ E +AYA++N LLFMET
Sbjct:   105 NTDTFARAKNWVKELQRQASPNIVIALAGNKADL-ASKRAVEFQEAQAYADDNSLLFMET 163

Query:   206 SAKTAMNVNEIFVEIAKKLPKKEVNNGQG--GR-RLVETAEA-PKT-SNCCN 252
             SAKTAMNVNEIF+ IAKKLPK E  N  G  GR R V+  E+ P + S CC+
Sbjct:   164 SAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRTRGVDLQESNPASRSQCCS 215

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005811 "lipid particle" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=TAS

GO:0006810 "transport" evidence=IEA

GO:0007032 "endosome organization" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

GO:0030100 "regulation of endocytosis" evidence=IDA

GO:0030139 "endocytic vesicle" evidence=IDA

UNIPROTKB|Q98932 RAB5C "Ras-related protein Rab-5C" [Gallus gallus (taxid:9031)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 71/112 (63%), Positives = 84/112 (75%)

Query:   146 NIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMET 205
             N DTF RAK+WVKELQR A PNIVIALAGNKADL T +R V++ + + YA++N LLFMET
Sbjct:   105 NTDTFVRAKNWVKELQRQASPNIVIALAGNKADLAT-KRAVDFQDAQTYADDNSLLFMET 163

Query:   206 SAKTAMNVNEIFVEIAKKLPKKEVNNGQGG---RRLVETAEA--PKTSNCCN 252
             SAKTAMNVNEIF+ IAKKLPK E  N  GG    R+V+  E+  P  S CC+
Sbjct:   164 SAKTAMNVNEIFMAIAKKLPKNEPQNAPGGPGRNRVVDLQESSQPSRSQCCS 215

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0019003 "GDP binding" evidence=ISS

UNIPROTKB|F1NST3 RAB5C "Ras-related protein Rab-5C" [Gallus gallus (taxid:9031)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 71/112 (63%), Positives = 84/112 (75%)

Query:   146 NIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMET 205
             N DTF RAK+WVKELQR A PNIVIALAGNKADL T +R V++ + + YA++N LLFMET
Sbjct:   105 NTDTFVRAKNWVKELQRQASPNIVIALAGNKADLAT-KRAVDFQDAQTYADDNSLLFMET 163

Query:   206 SAKTAMNVNEIFVEIAKKLPKKEVNNGQGG---RRLVETAEA--PKTSNCCN 252
             SAKTAMNVNEIF+ IAKKLPK E  N  GG    R+V+  E+  P  S CC+
Sbjct:   164 SAKTAMNVNEIFMAIAKKLPKNEPQNAPGGPGRNRVVDLQESSQPSRSQCCS 215

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P51148	RAB5C_HUMAN	No assigned EC number	0.6062	0.4343	0.75	yes	N/A
Q98932	RAB5C_CHICK	No assigned EC number	0.6041	0.4343	0.75	yes	N/A
Q58DS9	RAB5C_BOVIN	No assigned EC number	0.6113	0.4343	0.75	yes	N/A
P51147	RAB5C_CANFA	No assigned EC number	0.6062	0.4343	0.75	yes	N/A
P36586	YPT5_SCHPO	No assigned EC number	0.5191	0.4182	0.7393	yes	N/A
P35278	RAB5C_MOUSE	No assigned EC number	0.6062	0.4343	0.75	yes	N/A
Q9SN68	RAF2B_ARATH	No assigned EC number	0.5053	0.4369	0.815	yes	N/A
Q86JP3	RAB5A_DICDI	No assigned EC number	0.5777	0.4155	0.7711	yes	N/A
Q5R7L7	RAB5C_PONAB	No assigned EC number	0.6062	0.4343	0.75	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	373
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	2e-81
pfam00071	162	pfam00071, Ras, Ras family	6e-58
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	5e-56
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-54
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-49
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	3e-43
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	7e-42
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-41
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	6e-40
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	6e-40
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-35
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-35
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	3e-35
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-34
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-33
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-32
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-30
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	3e-30
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	4e-30
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	1e-28
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-28
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	4e-27
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	4e-25
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	7e-25
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	6e-24
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	9e-24
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-23
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-23
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	7e-23
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	8e-23
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-22
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-22
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-22
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	8e-22
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	2e-21
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	1e-20
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	1e-20
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	9e-19
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-18
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	2e-18
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	4e-18
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-17
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-17
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-17
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	3e-17
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	8e-17
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-16
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-16
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-16
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	4e-16
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	5e-16
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	8e-16
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	9e-16
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	1e-15
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	4e-15
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	5e-15
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	7e-15
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	6e-14
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	6e-14
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	1e-13
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-13
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	4e-13
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-12
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	6e-12
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	6e-12
pfam00071	162	pfam00071, Ras, Ras family	3e-11
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	3e-11
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	5e-11
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-10
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-10
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-10
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-10
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	5e-10
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	6e-10
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-09
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	3e-09
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	3e-09
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	3e-09
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	4e-09
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	7e-09
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-08
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-07
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-07
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	6e-07
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	7e-07
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	8e-07
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	1e-06
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-06
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-06
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-06
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	4e-06
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	6e-06
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	8e-06
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-05
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-05
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	1e-05
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	2e-05
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	3e-05
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	4e-05
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	5e-05
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	5e-05
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	5e-05
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	6e-05
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	7e-05
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	7e-05
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	8e-05
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	8e-05
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	9e-05
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-04
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	1e-04
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-04
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	3e-04
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	3e-04
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	3e-04
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	4e-04
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	4e-04
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	5e-04
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	5e-04
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	6e-04
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	6e-04
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	6e-04
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	7e-04
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	7e-04
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	8e-04
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	0.001
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	0.001
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	0.002
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	0.002
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	0.002
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	0.003
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	0.003
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	0.003
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	0.004

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  245 bits (628), Expect = 2e-81
 Identities = 94/150 (62%), Positives = 109/150 (72%), Gaps = 22/150 (14%)

Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           AAF+TQTV LDD T++FEIWDTAGQERY +LAPMYYR A AAI+VYDIT++         
Sbjct: 36  AAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSE--------- 86

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
                       ++F +AKSWVKELQ   PPNIVIALAGNKADL  S+R V   E + YA
Sbjct: 87  ------------ESFEKAKSWVKELQEHGPPNIVIALAGNKADL-ESKRQVSTEEAQEYA 133

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLP 225
           +ENGLLFMETSAKT  NVNE+F EIA+KLP
Sbjct: 134 DENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  185 bits (472), Expect = 6e-58
 Identities = 66/151 (43%), Positives = 88/151 (58%), Gaps = 22/151 (14%)

Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
             F T+T+ +D  T++ +IWDTAGQER+  L P+YYR AQ  ++VYDIT++         
Sbjct: 34  VDFYTKTIEVDGKTVKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSR--------- 84

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
                       D+F   K W++E+ R A  N+ I L GNK DL    R V   EGEA A
Sbjct: 85  ------------DSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQ-RVVSTEEGEALA 131

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
           +E GL FMETSAKT  NV E F E+A+++ K
Sbjct: 132 KELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  180 bits (459), Expect = 5e-56
 Identities = 65/150 (43%), Positives = 94/150 (62%), Gaps = 22/150 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+T+ +D   ++ +IWDTAGQER+ ++   YYR A  A++VYDITN+++F        
Sbjct: 37  FKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESF-------- 88

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                   N+      ++W+KEL+  A PN+VI L GNK+DL   R+ V   E EA+AEE
Sbjct: 89  -------ENL------ENWLKELREYASPNVVIMLVGNKSDLEEQRQ-VSREEAEAFAEE 134

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           +GL F ETSAKT  NV E F E+A+++ K+
Sbjct: 135 HGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  176 bits (448), Expect = 2e-54
 Identities = 62/147 (42%), Positives = 87/147 (59%), Gaps = 22/147 (14%)

Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
             F ++T+ +D   ++ +IWDTAGQER+ ++   YYR A  AI+VYD+TN+++F      
Sbjct: 35  VDFKSKTIEVDGKKVKLQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESF------ 88

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
                     N+D       W+ EL+  APPNI I L GNK+DL    R V   E + +A
Sbjct: 89  ---------ENLD------KWLNELKEYAPPNIPIILVGNKSDLE-DERQVSTEEAQQFA 132

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAK 222
           +ENGLLF ETSAKT  NV+E F  +A+
Sbjct: 133 KENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  163 bits (415), Expect = 2e-49
 Identities = 63/149 (42%), Positives = 85/149 (57%), Gaps = 22/149 (14%)

Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           A+F  +TV +    I   IWDTAGQERYH L P+YYR+A  AI+VYDIT+ D+F + K W
Sbjct: 35  ASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKW 94

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
           +KEL++M        G               NI + + GNK DL   +R V  SE E YA
Sbjct: 95  IKELKQMR-------GN--------------NISLVIVGNKIDLE-RQRVVSKSEAEEYA 132

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKL 224
           +  G    ETSAKT   + E+F+ +AK++
Sbjct: 133 KSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  147 bits (373), Expect = 3e-43
 Identities = 56/147 (38%), Positives = 88/147 (59%), Gaps = 22/147 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+++T+ +DD T+R ++WDTAGQER+ +L P Y R++  A++VYDITN+ +F        
Sbjct: 37  FLSKTMYVDDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSF-------- 88

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                   N D       W+ +++     +++I L GNK DL + +R V   EGE  A+E
Sbjct: 89  -------DNTDK------WIDDVRDERGNDVIIVLVGNKTDL-SDKRQVSTEEGEKKAKE 134

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL 224
           N  +F+ETSAK   NV ++F +IA+ L
Sbjct: 135 NNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  144 bits (364), Expect = 7e-42
 Identities = 59/150 (39%), Positives = 90/150 (60%), Gaps = 22/150 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ LD  T++ +IWDTAGQER+ T+   YYR A   IIVYD+T+Q++F   K W++
Sbjct: 39  FKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQ 98

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E+ R A  N++                       L GNK DL T ++ V+Y+E + +A+E
Sbjct: 99  EIDRYASENVNKL---------------------LVGNKCDL-TDKKVVDYTEAKEFADE 136

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G+ F+ETSAK A NV E F+ +A+++ K+
Sbjct: 137 LGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  143 bits (363), Expect = 1e-41
 Identities = 62/147 (42%), Positives = 85/147 (57%), Gaps = 22/147 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+T+ +D  TI+ +IWDTAGQERY  +   YYR A  A++VYDIT + TF       +
Sbjct: 40  FATRTIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKSTF-------E 92

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
            ++R              W+KEL+  A  NIVI L GNK+DL    R V   E +A+AE+
Sbjct: 93  NVER--------------WLKELRDHADSNIVIMLVGNKSDLR-HLRAVPTEEAKAFAEK 137

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL 224
           NGL F+ETSA    NV E F ++  ++
Sbjct: 138 NGLSFIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  139 bits (351), Expect = 6e-40
 Identities = 63/150 (42%), Positives = 87/150 (58%), Gaps = 22/150 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  + + +D   I+ +IWDTAGQE + ++   YYR A  A++VYDIT ++TF    SW++
Sbjct: 41  FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLE 100

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           +              A+         +  N+ I L GNK DL  SRR V Y EGEA+A E
Sbjct: 101 D--------------ARQH-------SNSNMTIMLIGNKCDLE-SRREVSYEEGEAFARE 138

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           +GL+FMETSAKTA NV E F+  AK++  K
Sbjct: 139 HGLIFMETSAKTASNVEEAFINTAKEIYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  138 bits (351), Expect = 6e-40
 Identities = 61/162 (37%), Positives = 89/162 (54%), Gaps = 30/162 (18%)

Query: 74  FSAAFIT--------QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F+ +FI+        +T+ LD   I+ +IWDTAGQER+ T+   YYR A   I+VYDIT+
Sbjct: 28  FNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTSYYRGAMGIILVYDITD 87

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
           + +F   K+W++ +   A  ++             +RM        L GNK D+   +R 
Sbjct: 88  EKSFENIKNWMRNIDEHASEDV-------------ERM--------LVGNKCDM-EEKRV 125

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           V   EGEA A E G+ F+ETSAK  +NV E F+ +AK + KK
Sbjct: 126 VSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  127 bits (320), Expect = 2e-35
 Identities = 57/147 (38%), Positives = 80/147 (54%), Gaps = 22/147 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +TV +D   ++  IWDTAGQER+ TL   YYR AQ  I+VYD+T +DTF    +W+ 
Sbjct: 37  FKVKTVTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLN 96

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           EL        DT+               P+ V  L GNK D     R V   EG+ +A +
Sbjct: 97  EL--------DTYSTN------------PDAVKMLVGNKIDKEN--REVTREEGQKFARK 134

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL 224
           + +LF+ETSAKT + V + F E+ +K+
Sbjct: 135 HNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  127 bits (320), Expect = 2e-35
 Identities = 60/154 (38%), Positives = 84/154 (54%), Gaps = 22/154 (14%)

Query: 71  PYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFG 130
           P+     F T+ + ++   I+ +IWDTAGQER+  +   YYR A  A++VYDIT +    
Sbjct: 32  PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR---- 87

Query: 131 RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
                             T+    SW+ + + +  PN VI L GNKADL   R  V Y E
Sbjct: 88  -----------------STYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRD-VTYEE 129

Query: 191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
            + +A+ENGLLF+E SAKT  NV + F+E AKK+
Sbjct: 130 AKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  126 bits (318), Expect = 3e-35
 Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 22/149 (14%)

Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
             F ++ V +   +++ +IWDTAGQER+ ++   YYR A  A++VYDIT++++F    +W
Sbjct: 35  VEFGSRVVNVGGKSVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRESFNALTNW 94

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
           + +              A++       +A P+IVI L GNK DL    R V + E   +A
Sbjct: 95  LTD--------------ART-------LASPDIVIILVGNKKDL-EDDREVTFLEASRFA 132

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKL 224
           +ENGLLF+ETSA T  NV E F++ A+ +
Sbjct: 133 QENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  126 bits (318), Expect = 1e-34
 Identities = 60/150 (40%), Positives = 86/150 (57%), Gaps = 22/150 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  + + +D+  I+ +IWDTAGQE + ++   YYR A  A++VYDIT +           
Sbjct: 43  FGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------- 91

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                     +TF    SW+++ ++ A  N+ I L GNK DL   RR V   EGE +A+E
Sbjct: 92  ----------ETFNHLASWLEDARQHANANMTIMLIGNKCDL-AHRRAVSTEEGEQFAKE 140

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           +GL+FME SAKTA NV E F++ A K+ KK
Sbjct: 141 HGLIFMEASAKTAQNVEEAFIKTAAKIYKK 170

Length = 210

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  123 bits (310), Expect = 1e-33
 Identities = 66/189 (34%), Positives = 102/189 (53%), Gaps = 28/189 (14%)

Query: 69  FYPYLFSA----AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDIT 124
           F    F A     F  + V +D V ++ +IWDTAGQER+ ++   YYR+A A +++YD+T
Sbjct: 25  FLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVT 84

Query: 125 NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR 184
           N+ +F                NI      ++W+ E+   A  ++VI L GNKAD+ +  R
Sbjct: 85  NKSSFD---------------NI------RAWLTEILEYAQSDVVIMLLGNKADM-SGER 122

Query: 185 CVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNG-QGGRRLVETAE 243
            V+  +GE  A+E G+ FMETSAKT +NV   F  +AK+L  + V    +   ++ +  E
Sbjct: 123 VVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSVEQPDEPKFKIQDYVE 182

Query: 244 -APKTSNCC 251
              K+S CC
Sbjct: 183 KQKKSSGCC 191

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  119 bits (301), Expect = 1e-32
 Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 23/148 (15%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ +    ++ +IWDTAGQER+ T+   YYR+A  AII YDIT + +F        
Sbjct: 40  FTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFE------- 92

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
            +                W++E+++    N+V+ L GNK DL   R  V + E    AE 
Sbjct: 93  SVPH--------------WIEEVEKYGASNVVLLLIGNKCDLEEQRE-VLFEEACTLAEH 137

Query: 198 NGLLF-METSAKTAMNVNEIFVEIAKKL 224
            G+L  +ETSAK + NV E F+ +A +L
Sbjct: 138 YGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  114 bits (287), Expect = 2e-30
 Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 21/155 (13%)

Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           A F+T+ V +DD  +  +IWDTAGQER+ +L   +YR A   ++VYD+TN  +F    SW
Sbjct: 35  ADFLTKEVTVDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSW 94

Query: 136 VKE-LQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194
             E L + +P + + F               P +V+   GNK DL   +R V   + + +
Sbjct: 95  RDEFLIQASPRDPENF---------------PFVVL---GNKIDL-EEKRQVSTKKAQQW 135

Query: 195 AEENGLL-FMETSAKTAMNVNEIFVEIAKKLPKKE 228
            +  G + + ETSAK A+NV++ F  IA+   ++E
Sbjct: 136 CKSKGNIPYFETSAKEAINVDQAFETIARLALEQE 170

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  113 bits (284), Expect = 3e-30
 Identities = 49/143 (34%), Positives = 76/143 (53%), Gaps = 21/143 (14%)

Query: 82  TVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQR 141
            + +D  T   +I DTAGQE +  +   Y RN    I+VY IT++++F   K+  +++ R
Sbjct: 39  QIVVDGETYTLDILDTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILR 98

Query: 142 MAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201
                          VK+       ++ I L GNK DL   R+ V   EGEA AEE G  
Sbjct: 99  ---------------VKD-----KEDVPIVLVGNKCDLENERQ-VSTEEGEALAEEWGCP 137

Query: 202 FMETSAKTAMNVNEIFVEIAKKL 224
           F+ETSAKT +N++E+F  + +++
Sbjct: 138 FLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  114 bits (287), Expect = 4e-30
 Identities = 72/190 (37%), Positives = 97/190 (51%), Gaps = 36/190 (18%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+T+ ++  T++ +IWDTAGQERY  +   YYR A  A++VYDIT + TF        
Sbjct: 49  FATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF-------D 101

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
            +QR              W++EL+  A  NIVI +AGNK+DL    R V   +G+A AE+
Sbjct: 102 NVQR--------------WLRELRDHADSNIVIMMAGNKSDL-NHLRSVAEEDGQALAEK 146

Query: 198 NGLLFMETSAKTAMNVN--------EIFVEIAKK-LPKKEVNN-----GQGGRRLVETAE 243
            GL F+ETSA  A NV         EI+  I+KK L  +E        GQG    V    
Sbjct: 147 EGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQEAAANSGLPGQGTTINVADTS 206

Query: 244 APKTSNCCNT 253
                 CC+T
Sbjct: 207 GNNKRGCCST 216

Length = 216

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  110 bits (276), Expect = 1e-28
 Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 42/188 (22%)

Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           AAF+ + + + +  +   IWDTAG ERY  ++ +YYR A+AAI+ YD+T+  +F RAK W
Sbjct: 36  AAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFW 95

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL---PTSRRCVEYSEGE 192
           VKELQ +                        +  I L G K+DL     S R V++ + +
Sbjct: 96  VKELQNLE----------------------EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQ 133

Query: 193 AYAEENGLLFMETSAKTAMNVNEIFVEIAKKL---------PKKEVNNGQGGRRLVETAE 243
            +A+E      ETS+KT  NV+E+F ++A+            +K V+ GQ         +
Sbjct: 134 DFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQMNTEKGVDLGQ--------KK 185

Query: 244 APKTSNCC 251
                +CC
Sbjct: 186 NSYFYSCC 193

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  109 bits (272), Expect = 2e-28
 Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 22/154 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+++T+ LD+  +R ++WDTAGQER+ +L P Y R++ AAI+VYDITN+ +F     W++
Sbjct: 17  FLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQ 76

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           ++       ++  G+              +++IAL GNK DL   R+ V Y EG   A+E
Sbjct: 77  DI-------LNERGK--------------DVIIALVGNKTDLGDLRK-VTYEEGMQKAQE 114

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
              +F ETSAK   N+  +F +IA KLP  + +N
Sbjct: 115 YNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNSN 148

Length = 176

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  105 bits (263), Expect = 4e-27
 Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 22/147 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+ +TV +    I+ +IWDTAGQER+ ++   YYR+A A I+ YDIT +++F        
Sbjct: 44  FMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESF-------- 95

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
              R  P           W++E+++ A   ++  L GNK DL   RR V     E +++ 
Sbjct: 96  ---RCLP----------EWLREIEQYANNKVITILVGNKIDL-AERREVSQQRAEEFSDA 141

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL 224
             + ++ETSAK + NV ++F+++A +L
Sbjct: 142 QDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  100 bits (251), Expect = 4e-25
 Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 36/191 (18%)

Query: 74  FSAAFIT--------QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           FS ++IT        +TV ++   ++ +IWDTAGQER+ T+   YYR     I+VYD+TN
Sbjct: 31  FSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTN 90

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
            ++F   K W++E+++    N D   +                   L GNK D P  R+ 
Sbjct: 91  GESFVNVKRWLQEIEQ----NCDDVCK------------------VLVGNKNDDP-ERKV 127

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAK-----KLPKKEVNNGQGGRRLVE 240
           VE  +   +A + G+   ETSAK  +NV E+F  I +     K         Q    +V+
Sbjct: 128 VETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVK 187

Query: 241 TAEAPKTSNCC 251
             +  K    C
Sbjct: 188 LPKNSKRKKRC 198

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  100 bits (250), Expect = 7e-25
 Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 21/132 (15%)

Query: 86  DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPP 145
             V I+ ++WDTAGQER+ ++   YYRN+   ++V+DITN+++F     W++E       
Sbjct: 48  PGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEE------- 100

Query: 146 NIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMET 205
                  A+S ++      P   V  L G+K DL  S+R V   E E  A++ G+ ++ET
Sbjct: 101 -------ARSHIQ------PHRPVFILVGHKCDL-ESQRQVTREEAEKLAKDLGMKYIET 146

Query: 206 SAKTAMNVNEIF 217
           SA+T  NV E F
Sbjct: 147 SARTGDNVEEAF 158

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 96.5 bits (240), Expect = 6e-24
 Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 30/152 (19%)

Query: 74  FSAAFIT--------QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F++AF++        +TV  +D  I+ +IWDTAGQERY T+   YYR A   I++YDITN
Sbjct: 26  FTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN 85

Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
           +++F   + W  ++            +  SW          N  + L GNK D+    R 
Sbjct: 86  EESFNAVQDWSTQI------------KTYSW---------DNAQVILVGNKCDM-EDERV 123

Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIF 217
           V    G   A++ G  F E SAK  +NV ++F
Sbjct: 124 VSAERGRQLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 97.0 bits (241), Expect = 9e-24
 Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 31/163 (19%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +TV L    IR +IWDTAGQER++++   YYR+A+  I+VYDIT ++TF     W+K
Sbjct: 37  FKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMK 96

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
            + + A  + +                     + L GNK D  T R  +   +GE +A++
Sbjct: 97  MIDKYASEDAE---------------------LLLVGNKLDCETDRE-ITRQQGEKFAQQ 134

Query: 198 -NGLLFMETSAKTAMNVNEIFV----EIAKKLP----KKEVNN 231
             G+ F E SAK   NV+EIF+    +I KK+P    + E++N
Sbjct: 135 ITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSN 177

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 97.0 bits (241), Expect = 1e-23
 Identities = 61/171 (35%), Positives = 86/171 (50%), Gaps = 29/171 (16%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGR-AKSWVKELQRMAPPNID 148
           ++  IWDTAGQER+ TL   YYRNAQ  I+VYD+T ++TF   +  W KE        ++
Sbjct: 62  LKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKE--------VE 113

Query: 149 TFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAK 208
            +   +  VK             L GNK D   S R V   EG A A+E+G LF+E SAK
Sbjct: 114 LYSTNQDCVK------------MLVGNKVDR-ESERDVSREEGMALAKEHGCLFLECSAK 160

Query: 209 TAMNVNEIFVEIAKKLPK----KEVNNGQGGRRLVETA---EAPKTSNCCN 252
           T  NV + F E+A K+ +     E  +    R +++     + P    CC+
Sbjct: 161 TRENVEQCFEELALKIMEVPSLLEEGSTAVKRNILKQKPEHQPPPNGGCCS 211

Length = 211

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 96.6 bits (240), Expect = 2e-23
 Identities = 53/175 (30%), Positives = 77/175 (44%), Gaps = 36/175 (20%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           YP         +T+      I+ ++WDTAGQE Y +L P YYR A   +IVYD T +++ 
Sbjct: 34  YPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESS 93

Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR------ 183
                                   + W++EL+ +AP ++ I L GNK DL   +      
Sbjct: 94  DELT--------------------EEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEI 133

Query: 184 -----RCVEYSEGEAYA---EENGLLFMETSAK--TAMNVNEIFVEIAKKLPKKE 228
                R V        A   E      +ETSAK  T  NVNE+F E+ +KL ++ 
Sbjct: 134 LNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEI 188

Length = 219

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 93.7 bits (233), Expect = 7e-23
 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 29/153 (18%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERY-HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
           F  +TV +D   I+ ++WDTAGQER+  ++   YYRN  A + VYD+TN  +F    SW+
Sbjct: 39  FRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWI 98

Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA--Y 194
           +E ++ + PN            E+ R+        L GNK DL   R  ++     A  +
Sbjct: 99  EECEQHSLPN------------EVPRI--------LVGNKCDL---REQIQVPTDLAQRF 135

Query: 195 AEENGLLFMETSAK---TAMNVNEIFVEIAKKL 224
           A+ + +   ETSAK      +V  IF+ +A KL
Sbjct: 136 ADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 93.5 bits (232), Expect = 8e-23
 Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 22/144 (15%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ +D + +R +IWDTAGQERY T+   YYR AQ   +VYDI+++ ++     WV 
Sbjct: 37  FKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVS 96

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           ++   AP  +                        L GNKAD    +R V   +G   A+E
Sbjct: 97  DVDEYAPEGVQKI---------------------LIGNKAD-EEQKRQVGDEQGNKLAKE 134

Query: 198 NGLLFMETSAKTAMNVNEIFVEIA 221
            G+ F ETSA T  N+ E F  + 
Sbjct: 135 YGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 92.8 bits (231), Expect = 1e-22
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 19/136 (13%)

Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V + +  +R   +D +G   Y  +   +Y++ Q  ++VYD+T++ +F    SW+KE++  
Sbjct: 42  VSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMK-- 99

Query: 143 APPNIDTFGRAKSWVKELQRMAPP-NIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201
                          +E        NIV+ +  NK DL    R V   EG  +AE  G  
Sbjct: 100 ---------------QEGGPHGNMENIVVVVCANKIDLT-KHRAVSEDEGRLWAESKGFK 143

Query: 202 FMETSAKTAMNVNEIF 217
           + ETSA T   VNE+F
Sbjct: 144 YFETSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 91.8 bits (229), Expect = 2e-22
 Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 21/148 (14%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
            + + +D      +I DTAGQE +  +   Y R  +  ++VY IT++ +F   K + +++
Sbjct: 38  RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQI 97

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
            R               VK+       ++ I L GNK DL + R  V   EG+  A + G
Sbjct: 98  LR---------------VKDRD-----DVPIVLVGNKCDLESERV-VSTEEGKELARQWG 136

Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKK 227
             F+ETSAK  +NV+E F ++ +++ KK
Sbjct: 137 CPFLETSAKERVNVDEAFYDLVREIRKK 164

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 91.5 bits (228), Expect = 3e-22
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 21/148 (14%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
            + + +D      +I DTAGQE +  +   Y R  +  ++VY IT++ +F     + +++
Sbjct: 40  RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQI 99

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
            R               VK+       ++ I L GNK DL   R  V   EG+  A + G
Sbjct: 100 LR---------------VKDRD-----DVPIVLVGNKCDLENERV-VSTEEGKELARQWG 138

Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKK 227
             F+ETSAK  +NV+E F ++ +++ K 
Sbjct: 139 CPFLETSAKERINVDEAFYDLVREIRKS 166

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 91.6 bits (228), Expect = 8e-22
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 24/173 (13%)

Query: 86  DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPP 145
            +  +R ++WD AGQER+  +  +YY+ A  AIIV+D+T   TF     W K        
Sbjct: 46  PNTVVRLQLWDIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKW-KA------- 97

Query: 146 NIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL-FME 204
           ++D      S V        P +   L  NK DL   R   +  + + + +ENG + + E
Sbjct: 98  DLD------SKVTLPNGEPIPAL---LLANKCDLKKERLAKDPEQMDQFCKENGFIGWFE 148

Query: 205 TSAKTAMNVNEIFVEIAKKLPKKEVNNGQ------GGRRLVETAEAPKTSNCC 251
           TSAK  +N+ E    + K + K +               L +     K+ +CC
Sbjct: 149 TSAKENINIEEAMRFLVKNILKNDKGLQSPEPDEDNVIDLKQETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 89.5 bits (222), Expect = 2e-21
 Identities = 53/147 (36%), Positives = 74/147 (50%), Gaps = 21/147 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  + + +D      EI DTAG E++ ++  +Y +N Q  I+VY + NQ TF   K    
Sbjct: 37  FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRD 96

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           ++ R               VK  +      + I L GNK DL  S R V  +EG A AEE
Sbjct: 97  QIVR---------------VKGYE-----KVPIILVGNKVDL-ESEREVSSAEGRALAEE 135

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL 224
            G  FMETSAK+   VNE+F EI +++
Sbjct: 136 WGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 88.1 bits (218), Expect = 1e-20
 Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 23/153 (15%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           Y Y     + T T+ LD   ++ ++WDT+GQ R+ T+   Y R AQ  I+VYDITN+ +F
Sbjct: 35  YGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSF 94

Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
                W+KE+   AP                     P I   L GN+  L   R+ V   
Sbjct: 95  DGIDRWIKEIDEHAP-------------------GVPKI---LVGNRLHLAFKRQ-VATE 131

Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAK 222
           + +AYAE NG+ F E S     N+ E F E+A+
Sbjct: 132 QAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 88.0 bits (218), Expect = 1e-20
 Identities = 54/170 (31%), Positives = 78/170 (45%), Gaps = 21/170 (12%)

Query: 81  QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
           Q V +D      E+ DTAGQE Y  L   + R  +  I+VY IT++ TF R + + +++Q
Sbjct: 39  QVV-VDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQ 97

Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
           R               VK+ +  A   I+I   GNK D    R  V   EG A A   G 
Sbjct: 98  R---------------VKD-ESAADVPIMI--VGNKCDKVYERE-VSTEEGAALARRLGC 138

Query: 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNC 250
            F+E SAKT +NV   F  + + L +++   GQG +      +  K   C
Sbjct: 139 EFIEASAKTNVNVERAFYTLVRAL-RQQRQGGQGPKGGPTKKKEKKKRKC 187

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 82.0 bits (203), Expect = 9e-19
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 21/140 (15%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           ++T  +  D  T +F + DTAGQE Y  +  +YYR  ++++ V+DI              
Sbjct: 39  YVTTVIEEDGKTYKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVI------------ 86

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                    +D     +   KE+   A   + I L GNK DL  ++  ++      +A+ 
Sbjct: 87  -------LVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDLRDAK--LKTHVAFLFAKL 137

Query: 198 NGLLFMETSAKTAMNVNEIF 217
           NG   +  SA+T  N++  F
Sbjct: 138 NGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 82.5 bits (204), Expect = 1e-18
 Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 21/126 (16%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           +  ++WDTAGQER+ +L   ++R+A   ++++D+T++ +F   ++W+ +LQ  A      
Sbjct: 63  VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHA------ 116

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                           P+IV  L GNKADLP  +R V   +    A++ G+ + ETSA T
Sbjct: 117 ------------YCENPDIV--LIGNKADLP-DQREVSERQARELADKYGIPYFETSAAT 161

Query: 210 AMNVNE 215
             NV +
Sbjct: 162 GQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 25/135 (18%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           IRF +WDTAGQE++  L   YY   Q AII++D+T++ T+    +W ++L R        
Sbjct: 49  IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVR-------- 100

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                  V E       NI I L GNK D+    R V+  +   + ++N L + E SAK+
Sbjct: 101 -------VCE-------NIPIVLCGNKVDI--KDRKVKPKQITFHRKKN-LQYYEISAKS 143

Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 144 NYNFEKPFLWLARKL 158

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 80.3 bits (199), Expect = 4e-18
 Identities = 26/35 (74%), Positives = 32/35 (91%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           Q+KLVLLG+S+VGKSS+VLRFV+ +F E QESTIG
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIG 35

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 79.1 bits (196), Expect = 1e-17
 Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 34/155 (21%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKE 138
           +  V +D   +   +WDTAGQE Y  L P+ Y      ++ + + +  +F   K+ W  E
Sbjct: 38  SANVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPE 97

Query: 139 LQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL----------PTSRRCVEY 188
           ++                         PN+ I L G K DL             ++ +  
Sbjct: 98  IKHYC----------------------PNVPIILVGTKIDLRDDGNTLKKLEKKQKPITP 135

Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVEIAK 222
            EGE  A+E G + +ME SA T   + E+F E  +
Sbjct: 136 EEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 79.0 bits (195), Expect = 1e-17
 Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 28/170 (16%)

Query: 59  CMTQIVINVVF---YPYLFSAAFITQTVCLD--DVTIRFEIWDTAGQERYHTLAPMYYRN 113
            M Q  +  +F   Y       F+ + + L   D  +R  +WDTAGQE +  +   YYR 
Sbjct: 15  SMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRG 74

Query: 114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALA 173
           AQA I+V+  T++++F   +SW                      KE       +I + L 
Sbjct: 75  AQACILVFSTTDRESFEAIESW----------------------KEKVEAECGDIPMVLV 112

Query: 174 GNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKK 223
             K DL   +  +   E EA A+   L    TS K   NV E+F  +A+K
Sbjct: 113 QTKIDL-LDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 78.4 bits (193), Expect = 2e-17
 Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 22/148 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
              + + +D      EI DTAG E++  +  +Y +N Q   +VY IT Q +F   +   +
Sbjct: 37  SYRKQIEVDCQQCMLEILDTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLRE 96

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           ++ R               VK+ + +  P I++   GNK DL    R V   EG+  A +
Sbjct: 97  QILR---------------VKDTEDV--PMILV---GNKCDL-EDERVVSKEEGQNLARQ 135

Query: 198 NGLL-FMETSAKTAMNVNEIFVEIAKKL 224
            G   F+ETSAK+ +NV+EIF ++ +++
Sbjct: 136 WGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 78.0 bits (192), Expect = 3e-17
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 23/147 (15%)

Query: 78  FITQTVCLDDV--TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
            + +TV + D   ++   I+D+AGQE +  +    +       +VYD+TN+ +F     W
Sbjct: 39  LVVKTVPVPDTSDSVELFIFDSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRW 98

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
           +  + R     + T G                    L GNK DL T RR V+ ++ +A A
Sbjct: 99  INRV-RTHSHGLHTPG-------------------VLVGNKCDL-TDRREVDAAQAQALA 137

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAK 222
           + N L F ETSAK  +     F+ +A+
Sbjct: 138 QANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 78.3 bits (193), Expect = 8e-17
 Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 25/135 (18%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           IRF  WDTAGQE++  L   YY + Q AII++D+T + T+                N+ T
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY---------------KNVPT 106

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                 W ++L R+   NI I L GNK D+    R V+ ++   +  +  L + E SAK+
Sbjct: 107 ------WHRDLCRVC-ENIPIVLCGNKVDVKN--RQVK-AKQVTFHRKKNLQYYEISAKS 156

Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 157 NYNFEKPFLYLARKL 171

Length = 219

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 76.3 bits (188), Expect = 1e-16
 Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 22/135 (16%)

Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I ++ +F             
Sbjct: 42  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSF------------- 88

Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +I T+      VK+       ++ + L GNK DL    R V   +G+  A+  G+ +
Sbjct: 89  --EDIHTYREQIKRVKDSD-----DVPMVLVGNKCDLAA--RTVSTRQGQDLAKSYGIPY 139

Query: 203 METSAKTAMNVNEIF 217
           +ETSAKT   V E F
Sbjct: 140 IETSAKTRQGVEEAF 154

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 75.7 bits (186), Expect = 2e-16
 Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 26/141 (18%)

Query: 82  TVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQR 141
               +  TI  + WDTAGQER+ T+   YY  A A I+V+D+T + T+     W +EL R
Sbjct: 41  NAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEEL-R 99

Query: 142 MAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201
              P I                  P IV+A   NK DL  S       +   +AE++ L 
Sbjct: 100 EYRPEI------------------PCIVVA---NKIDLDPSVT----QKKFNFAEKHNLP 134

Query: 202 FMETSAKTAMNVNEIFVEIAK 222
               SA    NV ++F +  K
Sbjct: 135 LYYVSAADGTNVVKLFQDAIK 155

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 76.4 bits (188), Expect = 2e-16
 Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 21/154 (13%)

Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
             +D+ T   +I DTAGQE Y  +   Y R  Q  + VY IT++ +F    S+ +++ R 
Sbjct: 46  CVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILR- 104

Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
                         VK+  R+      + L GNK DL + R+ V   EG+  A+  G+ F
Sbjct: 105 --------------VKDKDRVP-----MILVGNKCDLDSERQ-VSTGEGQELAKSFGIPF 144

Query: 203 METSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGR 236
           +ETSAK  +NV+E F E+ +++ K    +    +
Sbjct: 145 LETSAKQRVNVDEAFYELVREIRKYLKEDMPSQK 178

Length = 189

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 74.8 bits (184), Expect = 4e-16
 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 21/144 (14%)

Query: 81  QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
           + V LD   ++  I DTAGQE Y  +   Y+R+ +  ++V+ IT+ ++F     +     
Sbjct: 39  KKVVLDGEEVQLNILDTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFR---- 94

Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
                  +   R K            N+ + L GNK DL   R+ V   E    AE+ G+
Sbjct: 95  -------EQILRVK---------EDDNVPLLLVGNKCDLEDKRQ-VSVEEAANLAEQWGV 137

Query: 201 LFMETSAKTAMNVNEIFVEIAKKL 224
            ++ETSAKT  NV+++F ++ +++
Sbjct: 138 NYVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 74.6 bits (184), Expect = 5e-16
 Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 33/144 (22%)

Query: 86  DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPP 145
           D   +   +WDTAGQE Y  L P+ Y +    +I + + +  +F                
Sbjct: 42  DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASF---------------E 86

Query: 146 NIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------YSEGEAY 194
           N+    + K W  E++    PN+ I L G K DL   +  +E           Y +G+A 
Sbjct: 87  NV----KEK-WYPEVKHFC-PNVPIILVGTKLDLRNDKSTLEELSKKKQEPVTYEQGQAL 140

Query: 195 AEENGLL-FMETSAKTAMNVNEIF 217
           A+  G + ++E SA T   V E+F
Sbjct: 141 AKRIGAVKYLECSALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 74.0 bits (182), Expect = 8e-16
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 28/143 (19%)

Query: 85  LDDVTIRFEIWDTAGQERYH-----TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           LD   ++  + DT G + +       LA +  R A   ++V D T++++   AK      
Sbjct: 42  LDKGKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAK------ 95

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
                            +  L+R+    I I L GNK DL   R   E    E  A+  G
Sbjct: 96  -----------------LLILRRLRKEGIPIILVGNKIDLLEEREVEELLRLEELAKILG 138

Query: 200 LLFMETSAKTAMNVNEIFVEIAK 222
           +   E SAKT   V+E+F ++ +
Sbjct: 139 VPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 73.7 bits (181), Expect = 9e-16
 Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 21/142 (14%)

Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D      EI DTAG E++  +  +Y +N Q  ++VY IT Q TF   +   +++ R 
Sbjct: 42  VEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILR- 100

Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
                         VK+ +     ++ + L GNK DL    R V   +G+  A + G  F
Sbjct: 101 --------------VKDTE-----DVPMILVGNKCDL-EDERVVGKEQGQNLARQWGCAF 140

Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAK  +NVNEIF ++ +++
Sbjct: 141 LETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 21/143 (14%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           T+   +D    R +I DTAGQE +  +   Y R  +  ++V+ +T++ +F     +  ++
Sbjct: 40  TKQCEIDGQWARLDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQI 99

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
            R+   + D F               P I   L GNKADL   +R V   EG+  A +  
Sbjct: 100 LRVK--DRDEF---------------PMI---LVGNKADL-EHQRQVSREEGQELARQLK 138

Query: 200 LLFMETSAKTAMNVNEIFVEIAK 222
           + ++ETSAK  +NV++ F ++ +
Sbjct: 139 IPYIETSAKDRVNVDKAFHDLVR 161

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 72.2 bits (177), Expect = 4e-15
 Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 20/143 (13%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+ + + +D   +  +IWDTAGQER+ +L   +YR +   ++ + + +  +F    +W K
Sbjct: 42  FLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK 101

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E    A             VKE +    P +++   GNK D+P   R V   E +A+  +
Sbjct: 102 EFIYYAD------------VKEPESF--PFVIL---GNKIDIP--ERQVSTEEAQAWCRD 142

Query: 198 NGLL-FMETSAKTAMNVNEIFVE 219
           NG   + ETSAK A NV   F E
Sbjct: 143 NGDYPYFETSAKDATNVAAAFEE 165

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 71.8 bits (176), Expect = 5e-15
 Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 23/136 (16%)

Query: 88  VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNI 147
           V    ++WDTAGQER+  +A  YYR AQA IIV+D+T+  +    + W+++         
Sbjct: 47  VPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLED--------- 97

Query: 148 DTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA--YAEENGLLFMET 205
                       L+   P ++++ L G K DL +  +     E +A   A E    +   
Sbjct: 98  -----------ALKENDPSSVLLFLVGTKKDLSSPAQY-ALMEQDAIKLAREMKAEYWAV 145

Query: 206 SAKTAMNVNEIFVEIA 221
           SA T  NV + F  +A
Sbjct: 146 SALTGENVRDFFFRVA 161

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 71.5 bits (176), Expect = 7e-15
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 27/148 (18%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQE----RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           ++ V +D   +  EI DT GQ+           + +  A   ++VY IT++ +F      
Sbjct: 37  SRQVTIDGEQVSLEIQDTPGQQQNEDPESLERSLRW--ADGFVLVYSITDRSSFDVVSQL 94

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
           ++ ++ +                         I + L GNKADL  SR+ V   EG+  A
Sbjct: 95  LQLIREIKK-------------------RDGEIPVILVGNKADLLHSRQ-VSTEEGQKLA 134

Query: 196 EENGLLFMETSA-KTAMNVNEIFVEIAK 222
            E G LF E SA +  + V  +F E+ +
Sbjct: 135 LELGCLFFEVSAAENYLEVQNVFHELCR 162

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 69.7 bits (171), Expect = 6e-14
 Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 25/135 (18%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I F +WDTAGQE++  L   YY   Q AII++D+T++ T+    +W +++ R+       
Sbjct: 58  ICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC------ 111

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+  +   + ++N L + + SAK+
Sbjct: 112 ----------------ENIPIVLVGNKVDV--KDRQVKARQITFHRKKN-LQYYDISAKS 152

Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A++L
Sbjct: 153 NYNFEKPFLWLARRL 167

Length = 215

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 69.7 bits (170), Expect = 6e-14
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 25/135 (18%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           IRF +WDTAGQE++  L   YY   Q AII++D+T + T+    +W ++L R+       
Sbjct: 44  IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC------ 97

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+      + ++N L + + SAK+
Sbjct: 98  ----------------ENIPIVLCGNKVDV--KDRKVKAKSITFHRKKN-LQYYDISAKS 138

Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 139 NYNFEKPFLWLARKL 153

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 33/141 (23%)

Query: 89  TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNID 148
            I   +WDTAGQE Y  L P+ Y +    +I Y + N  +                 N+ 
Sbjct: 51  IIELALWDTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSL---------------DNV- 94

Query: 149 TFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC-----------VEYSEGEAYAEE 197
                  W  E+     P   I L G K DL   +             V   +GE+ A+ 
Sbjct: 95  ----EDKWYPEVNHFC-PGTPIVLVGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKS 149

Query: 198 -NGLLFMETSAKTAMNVNEIF 217
              + ++E SAK   NV+E+F
Sbjct: 150 IGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 21/145 (14%)

Query: 93  EIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGR 152
           EI DTAGQ+ Y  L   Y       I+VY +T++ +F            +    I     
Sbjct: 52  EIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSF-----------EVVK-VI----- 94

Query: 153 AKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMN 212
              + K L  +   ++ I L GNK+DL    R V   EG+  AE  G  F+E+SAK   N
Sbjct: 95  ---YDKILDMLGKESVPIVLVGNKSDLHM-ERQVSAEEGKKLAESWGAAFLESSAKENEN 150

Query: 213 VNEIFVEIAKKLPKKEVNNGQGGRR 237
           V E F  + +++ K E     G + 
Sbjct: 151 VEEAFELLIEEIEKVENPLPPGQKS 175

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 67.6 bits (165), Expect = 4e-13
 Identities = 50/194 (25%), Positives = 72/194 (37%), Gaps = 57/194 (29%)

Query: 94  IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRA 153
           IWDTAG+E++H L  MY R A A I+ YD++N  +        +EL+       DT    
Sbjct: 48  IWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSL-------EELEDRFLGLTDT---- 96

Query: 154 KSWVKELQRMAPPNIVIALAGNKADL------------------PTSRRCVEYSEGEAYA 195
                     A  + + A+ GNK DL                  P  +R V   + +A+ 
Sbjct: 97  ----------ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFY 146

Query: 196 EE----NGL----------LFMETSAKTAMNVNEIFVEIAKK-LPKKEVNNGQGGRRLVE 240
           +       L          +  ETSAKT  NV+E+F  +    LP       +  R    
Sbjct: 147 KRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGT 206

Query: 241 TAEAP---KTSNCC 251
                     S CC
Sbjct: 207 VNLPNPKRSKSKCC 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 19/128 (14%)

Query: 93  EIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGR 152
           +I DT G  ++  +  +      A I+VY IT++ +    K  + EL             
Sbjct: 52  QITDTTGSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKP-IYEL------------- 97

Query: 153 AKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMN 212
               + E++      I I L GNK D  +  R V  SEG A A      FMETSAKT  N
Sbjct: 98  ----ICEIKGNNLEKIPIMLVGNKCD-ESPSREVSSSEGAALARTWNCAFMETSAKTNHN 152

Query: 213 VNEIFVEI 220
           V E+F E+
Sbjct: 153 VQELFQEL 160

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 64.0 bits (156), Expect = 6e-12
 Identities = 39/132 (29%), Positives = 56/132 (42%), Gaps = 19/132 (14%)

Query: 93  EIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGR 152
           ++WD  GQ+    +   Y   AQA  +VYDITN  +F   + W                 
Sbjct: 53  QVWDIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDW----------------- 95

Query: 153 AKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMN 212
             S VK++   +     + L GNK DL    R V   +   +A+EN +  +  SAKT   
Sbjct: 96  -LSVVKKVNEESETKPKMVLVGNKTDLE-HNRQVTAEKHARFAQENDMESIFVSAKTGDR 153

Query: 213 VNEIFVEIAKKL 224
           V   F  IA +L
Sbjct: 154 VFLCFQRIAAEL 165

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 63.7 bits (155), Expect = 6e-12
 Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 31/143 (21%)

Query: 85  LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144
           +D   ++  +WDTAGQE Y  L P+ Y  A   +I + I   D+    ++          
Sbjct: 44  VDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAIDTPDSLENVRT---------- 93

Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL---------PTSRRCVEYSEGEAYA 195
                      W++E++R   PN+ + L G K DL           +   V   + +  A
Sbjct: 94  ----------KWIEEVRRYC-PNVPVILVGLKKDLRQEAVAKGNYATDEFVPIQQAKLVA 142

Query: 196 EENGLL-FMETSAKTAMNVNEIF 217
              G   +ME SA T   V+++F
Sbjct: 143 RAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 61.0 bits (149), Expect = 3e-11
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           KLVL+G+  VGKSSL++RF + +F E    TIG
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIG 33

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 22/145 (15%)

Query: 81  QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
           + V +D      EI DTAG E++  +  +Y ++ Q  ++VY +T++ +       + EL 
Sbjct: 40  KQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEAS-------LNELG 92

Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
            +    +    R K            N+ + L GNKADL    R V   +G + +++ G 
Sbjct: 93  ELREQVL----RIKD---------SDNVPMVLVGNKADL-EDDRQVSREDGVSLSQQWGN 138

Query: 201 L-FMETSAKTAMNVNEIFVEIAKKL 224
           + F ETSA+   NV+E+F+++ +++
Sbjct: 139 VPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 60.2 bits (147), Expect = 5e-11
 Identities = 21/39 (53%), Positives = 31/39 (79%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQS 336
           +K+VL+G+S VGK+SL+LRFV  +F E  +STIG + +S
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKS 39

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 33/137 (24%)

Query: 94  IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRA 153
           +WDTAGQE Y  L P+ Y +    ++ + I + D+                 NI      
Sbjct: 53  LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSL---------------ENIP----- 92

Query: 154 KSWVKELQRMAPPNIVIALAGNKADL---PTSRR--------CVEYSEGEAYAEE-NGLL 201
           + W  E++    PN+ I L GNK DL     + R         V+  EG A AE+     
Sbjct: 93  EKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFG 151

Query: 202 FMETSAKTAMNVNEIFV 218
           ++E SAKT   V E+F 
Sbjct: 152 YLECSAKTKEGVREVFE 168

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 33/147 (22%)

Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D   +R ++ DTAGQ+ +  L P+ Y +    ++ + + N  +F             
Sbjct: 41  VLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSF------------- 87

Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVEYSEG 191
              NI     ++ W+ E+++   P   I L G +ADL T             + V  S  
Sbjct: 88  --QNI-----SEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRA 139

Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIF 217
           +A AE+ G   ++E SA T  N+ E+F
Sbjct: 140 KALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 59.1 bits (143), Expect = 1e-10
 Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 36/154 (23%)

Query: 74  FSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK 133
           FSA      V +D  T+   +WDTAGQE Y+ L P+ YR A            D F  A 
Sbjct: 38  FSA-----NVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGA------------DVFLLAF 80

Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR--------- 184
           S +    + +  N+      K W+ EL+  A P + I L G K DL   ++         
Sbjct: 81  SLI---SKASYENV-----LKKWIPELRHYA-PGVPIVLVGTKLDLRDDKQFFADHPGAV 131

Query: 185 CVEYSEGEAYAEENGL-LFMETSAKTAMNVNEIF 217
            +  ++GE   ++ G   ++E S+KT  NV  +F
Sbjct: 132 PITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 19/34 (55%), Positives = 27/34 (79%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +K++L+G+S VGKSSL+ RF  G+F E  +STIG
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIG 34

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 58.6 bits (142), Expect = 5e-10
 Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 30/172 (17%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           T +V  ++ T+   ++D   QE    L     +   A +IVY +T++ +F +A     +L
Sbjct: 41  TVSVDGEEATL--VVYDHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQL 98

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
           +R                    R A  +I I L GNK+DL  SR  V   EG A A    
Sbjct: 99  RR-------------------ARQAE-DIPIILVGNKSDLVRSRE-VSVQEGRACAVVFD 137

Query: 200 LLFMETSAKTAMNVNEIFVEIAKKL-------PKKEVNNGQGGRRLVETAEA 244
             F+ETSA    NV+E+F  I +++        K         RR   T +A
Sbjct: 138 CKFIETSAALQHNVDELFEGIVRQVRLRRDSKEKNTRRMASRKRRESITKKA 189

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 57.6 bits (139), Expect = 6e-10
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 21/148 (14%)

Query: 81  QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
               +D+     +I DTAGQ  +  +   Y R  +  II Y +T++ +F  A  + + + 
Sbjct: 41  TQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELIT 100

Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
           R+                   R+   +I + L GNK DL   R+ V   EG   A E   
Sbjct: 101 RV-------------------RLT-EDIPLVLVGNKVDLEQQRQ-VTTEEGRNLAREFNC 139

Query: 201 LFMETSAKTAMNVNEIFVEIAKKLPKKE 228
            F ETSA     +++ F  + +++ +KE
Sbjct: 140 PFFETSAALRFYIDDAFHGLVREIRRKE 167

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSH 338
           +K+VLLGE  VGK+SLVLR+V  +F+E  EST         
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKT 41

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 42/177 (23%)

Query: 58  DCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117
           D   +  +  VF  Y  +A+F       D   I   +WDT+G   Y  + P+ Y ++ A 
Sbjct: 24  DSFPENYVPTVFENY--TASFEV-----DKQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 76

Query: 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKA 177
           +I +DI+                   P  +D     K W  E++    PN  + L G K+
Sbjct: 77  LICFDISR------------------PETLD--SVLKKWKGEVREFC-PNTPVLLVGCKS 115

Query: 178 DLPT---------SRRC--VEYSEGEAYAEENG-LLFMETSAKTAMN-VNEIFVEIA 221
           DL T         ++R   V + +G   A++ G   ++E SAKT+ N V ++F E+A
Sbjct: 116 DLRTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVF-EMA 171

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 33/150 (22%)

Query: 82  TVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQR 141
            V +D   +   +WDTAGQE Y  L P+ Y      +I + + +                
Sbjct: 41  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS---------------- 84

Query: 142 MAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------YSE 190
             P + +   RAK W  E++    PN  I L G K DL   +  +E           Y +
Sbjct: 85  --PASFENV-RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 139

Query: 191 GEAYAEE-NGLLFMETSAKTAMNVNEIFVE 219
           G A A+E   + ++E SA T   +  +F E
Sbjct: 140 GLAMAKEIGAVKYLECSALTQRGLKTVFDE 169

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 26/136 (19%)

Query: 88  VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNI 147
           V +  +I DT+G   +  +  +  +N  A  +VY + + ++F   K   +E+        
Sbjct: 45  VKVTIDILDTSGSYSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILE------ 98

Query: 148 DTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE---ENGLLFME 204
                    VKE +    P +V+   GNK D    R+ VE ++  +  E    NG  F+E
Sbjct: 99  ---------VKEDK--FVPIVVV---GNKIDSLAERQ-VEAADALSTVELDWNNG--FVE 141

Query: 205 TSAKTAMNVNEIFVEI 220
            SAK   NV E+F E+
Sbjct: 142 ASAKDNENVTEVFKEL 157

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 19/36 (52%), Positives = 28/36 (77%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
           +K+VL+G+S VGKS+L+ RF R +F+   +STIG E
Sbjct: 4   FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVE 39

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 54.5 bits (131), Expect = 7e-09
 Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 27/145 (18%)

Query: 85  LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMA 143
           +D + +   +WDTAGQE +  L  + Y +    ++ + + N D+    +S W+ E++   
Sbjct: 43  VDGLAVELSLWDTAGQEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHC 102

Query: 144 PPNIDTFGRAKSWVKELQRMAPPNIVIA-----LAGNKADLPTSRRCVEYSEGEAYAEE- 197
           P            VK         +V+      L   + +       + Y EG A A+  
Sbjct: 103 PG-----------VK---------LVLVALKCDLREPRNERDRGTHTISYEEGLAVAKRI 142

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAK 222
           N   ++E SAK    VNE F E A+
Sbjct: 143 NACRYLECSAKLNRGVNEAFTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 19/34 (55%), Positives = 24/34 (70%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            K++L+G+S VGKSSL+LRF    F E   STIG
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIG 34

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
           YKLV+LG   VGKS+L ++F++G F +  + TI
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTI 33

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
           YKLV+LG   VGKS+L ++FV+G F +  + TI
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTI 35

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 48.8 bits (116), Expect = 6e-07
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 20/101 (19%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I F +WD  GQ++   L   YY N Q  I V D  ++D    A+   +EL RM   +   
Sbjct: 57  ISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAR---EELHRMLNED--- 110

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
                    EL+     + VI +  NK DLP + +  E +E
Sbjct: 111 ---------ELR-----DAVILVFANKQDLPDAMKAAEITE 137

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 48.5 bits (115), Expect = 7e-07
 Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 41/173 (23%)

Query: 58  DCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117
           DC  +  +  VF  Y       T +  +D   I   +WDT+G   Y  + P+ Y ++ A 
Sbjct: 28  DCFPENYVPTVFENY-------TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80

Query: 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKA 177
           +I +DI+  +T                         K W  E+Q    PN  + L G K+
Sbjct: 81  LICFDISRPETLDSV--------------------LKKWKGEIQEFC-PNTKMLLVGCKS 119

Query: 178 DLPTS-----------RRCVEYSEGEAYAEENGLL-FMETSAKTAMN-VNEIF 217
           DL T            +  V Y +G   A++ G   ++E SA  + N V +IF
Sbjct: 120 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 172

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 47.9 bits (115), Expect = 8e-07
 Identities = 18/32 (56%), Positives = 23/32 (71%)

Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
           KLV+LG   VGKS+L +RFV G+F E  + TI
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTI 32

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 31/152 (20%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+ +T+ +    I F IWD  GQ  +  + P+  ++A A + ++D+T + T    K W +
Sbjct: 37  FMEKTISIRGTEITFSIWDLGGQREFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYR 96

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNK----ADLPTS--RRCVEYSEG 191
           +              A+ +     + A P +V    G K    ADLP        + +  
Sbjct: 97  Q--------------ARGF----NKTAIPILV----GTKYDLFADLPPEEQEEITKQARK 134

Query: 192 EAYAEENGLLFMETSAKTAMNVNEIF-VEIAK 222
            A A +  L+F   S   ++NV +IF   +AK
Sbjct: 135 YAKAMKAPLIF--CSTSHSINVQKIFKFVLAK 164

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 24/132 (18%)

Query: 89  TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNID 148
            ++F +WD  GQ++   L   YY N    I V D ++++    AK    EL ++      
Sbjct: 42  NVKFTVWDVGGQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAK---NELHKL------ 92

Query: 149 TFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE---GEAYAEENGLLFMET 205
                   + E +    P +++A   NK DLP +    E  E    E+       +    
Sbjct: 93  --------LNEEELKGAPLLILA---NKQDLPGALTESELIELLGLESIKGRRWHIQP-C 140

Query: 206 SAKTAMNVNEIF 217
           SA T   ++E  
Sbjct: 141 SAVTGDGLDEGL 152

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 54/235 (22%), Positives = 89/235 (37%), Gaps = 55/235 (23%)

Query: 48  MAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA 107
           M Q+  KD   C  +  +  VF  Y       T  +  ++  +   +WDT+G   Y  + 
Sbjct: 29  MLQVLAKD---CYPETYVPTVFENY-------TACLETEEQRVELSLWDTSGSPYYDNVR 78

Query: 108 PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPN 167
           P+ Y ++ A ++ +DI+  + F  A                     K W  E+     P+
Sbjct: 79  PLCYSDSDAVLLCFDISRPEIFDSA--------------------LKKWRAEILDYC-PS 117

Query: 168 IVIALAGNKADLPT-----------SRRCVEYSEGEAYAEENGL-LFMETSAKTA-MNVN 214
             I L G K DL T            +  + Y +G A A++ G   ++E SA T+  +++
Sbjct: 118 TRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIH 177

Query: 215 EIF-------VEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKS 262
            IF       +     L KK        R L      P  S   ++ F + K KS
Sbjct: 178 SIFRTASLLCINKLSPLAKKSPVRSLSKRLL----HLPSRSELISSTFKKEKAKS 228

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 19/96 (19%)

Query: 81  QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
            T+ +D  T    IWD  G+E       ++ + A A ++VYD+T++++       +  L 
Sbjct: 39  DTLEVDGDTGLLNIWDFGGREELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLP 98

Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNK 176
            +                         I + L GNK
Sbjct: 99  NLRKLGG-------------------KIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 20/102 (19%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I F +WD  GQ++   L   Y++N Q  I V D  +++  G A+   +ELQRM   N D 
Sbjct: 44  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAR---EELQRML--NED- 97

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG 191
                    EL+     + V+ +  NK DLP +    E ++ 
Sbjct: 98  ---------ELR-----DAVLLVFANKQDLPNAMSAAEVTDK 125

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 46.5 bits (110), Expect = 6e-06
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           ++K+V+LG+  VGK++L+ R V  +F E    TIG
Sbjct: 5   EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIG 39

Length = 219

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 17/35 (48%), Positives = 27/35 (77%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           Q++L+++G+S VGKSSL+ RF  G+F E  + T+G
Sbjct: 2   QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVG 36

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 15/34 (44%), Positives = 24/34 (70%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +KLV LG+ +VGK+S++ RF+   F    ++TIG
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIG 34

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISF 342
           Q K+ +LG  +VGKSSL ++FV G F E    TI  E   S  I++
Sbjct: 1   QRKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTI--ENTFSKIITY 44

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 89  TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMA 143
            IRF +WD  GQE   +    YY N  A I+V D T+++     K   +EL +M 
Sbjct: 58  NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTK---EELYKML 109

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 35/163 (21%)

Query: 69  FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
           + P +F   +  QT  +D  T+   +WDTAGQE Y  L  + Y      II + I +  +
Sbjct: 32  YIPTVFDN-YSAQT-AVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSS 89

Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL----PTSRR 184
           +   +                      W  E+     PN+ I L G K DL     T ++
Sbjct: 90  YENVR--------------------HKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKK 128

Query: 185 CVEYS-------EGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
             E         +G A A++   + ++E SA     V E+F E
Sbjct: 129 LKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAE 171

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +KL+L+G+S VGKS L+LRF    + E   STIG
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 36

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 94  IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK-SWVKELQRMAP 144
           ++DTAGQE Y  L P+ Y      +I + + N  +F   K  WV EL+  AP
Sbjct: 52  LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP 103

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 16/111 (14%)

Query: 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKA 177
           I+V+ + N+++F       +E+ R+    ++T    K+  KE        I + + GNKA
Sbjct: 76  ILVFSLDNRESF-------EEVCRLREQILETKSCLKNKTKE-----NVKIPMVICGNKA 123

Query: 178 DLPTSRRCVEYSEGEAY-AEENGLLFMETSAKTAMNVNEIFVEIAK--KLP 225
           D     R V+  E E     +    + E SAK   N++E+F  +    KLP
Sbjct: 124 DR-DFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLP 173

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 30/139 (21%), Positives = 46/139 (33%), Gaps = 33/139 (23%)

Query: 89  TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNID 148
            IR  +WD  GQE YH     +  +    ++V+D+   D   R   W++         I 
Sbjct: 50  KIRLNVWDFGGQEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLR--------QIK 101

Query: 149 TFGRAKSWVKELQRMAPPNIVIALAGNKADL-----PTSRRCVEYSEGEAYAEENGLLFM 203
            FG              P I++   G   D         +   +       A  N + F 
Sbjct: 102 AFGG-----------VSPVILV---GTHIDESCDEDILKKALNKKFP----AIINDIHF- 142

Query: 204 ETSAKTAMNVNEIFVEIAK 222
             S K    + E+   IAK
Sbjct: 143 -VSCKNGKGIAELKKAIAK 160

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 43.0 bits (101), Expect = 5e-05
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 20/101 (19%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I F +WD  GQ++   L   Y++N Q  I V D  ++D    A+    EL RM   +   
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNED--- 114

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
                    EL+     + V+ +  NK DLP +    E ++
Sbjct: 115 ---------ELR-----DAVLLVFANKQDLPNAMNAAEITD 141

Length = 181

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +KL+L+G+S VGKS L+LRF    F+    STIG
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIG 37

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 8/49 (16%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPT 346
           +K++L+G+S VGK+ +V RF  G F E Q +TIG        + F+M T
Sbjct: 4   FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIG--------VDFTMKT 44

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 43.1 bits (101), Expect = 7e-05
 Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 47/211 (22%)

Query: 58  DCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117
           D   +  +  VF  Y       T +  +D   I   +WDT+G   Y  + P+ Y ++ A 
Sbjct: 24  DNYPESYVPTVFENY-------TASFEIDKHRIELNMWDTSGSSYYDNVRPLAYPDSDAV 76

Query: 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNK- 176
           +I +DI+                   P  +D+    K W  E Q    PN  + L G K 
Sbjct: 77  LICFDISR------------------PETLDSV--LKKWQGETQEFC-PNAKLVLVGCKL 115

Query: 177 ---ADLPTSRRC-------VEYSEGEAYAEENGLL-FMETSAKTAMN-VNEIF----VEI 220
               DL T R         V + +G   A + G + ++E S++ + N V ++F    +  
Sbjct: 116 DMRTDLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLAS 175

Query: 221 AKKLPK--KEVNNGQGGRRLVETAEAPKTSN 249
            ++     K   + +G +R+ +    P T N
Sbjct: 176 VRREHPSLKRSTSRRGLKRISQQPLRPVTEN 206

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 14/34 (41%), Positives = 24/34 (70%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
           +YK+V+LG   VGKS++ ++F+   F +Y + TI
Sbjct: 2   EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTI 35

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 20/101 (19%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           ++F +WD  GQ++   L   YY+N    I V D  +++  G A+   +EL+RM   +   
Sbjct: 61  LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAR---EELERMLSED--- 114

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
                    EL+     + V+ +  NK DLP +    E +E
Sbjct: 115 ---------ELR-----DAVLLVFANKQDLPNAMSTTEVTE 141

Length = 182

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 18/34 (52%), Positives = 25/34 (73%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
           +YKLV+LG   VGKS+L ++FV+G F E  + TI
Sbjct: 1   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI 34

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
           Y++V+ G   VGKSSLVLRFV+G F E    TI
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI 34

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
           Y++V+LG S VGK+++V RF+ G+F E    TI
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI 33

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 14/34 (41%), Positives = 25/34 (73%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            K+++LG+S VGK+SL+ ++V  +F    ++TIG
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG 34

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 18/36 (50%), Positives = 27/36 (75%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
           +K+VL+G+S VGKS+++ RF R +F    +STIG E
Sbjct: 13  FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVE 48

Length = 216

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 13/34 (38%), Positives = 27/34 (79%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +K++++G+  VGK+S++ R+V G F ++ ++TIG
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIG 34

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 20/94 (21%)

Query: 89  TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNID 148
            ++F +WD  GQE    L   Y+ N  A I V D  ++D    AK    EL  +   N +
Sbjct: 57  NVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKE---ELHALL--NEE 111

Query: 149 TFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS 182
                     EL        ++ LA NK DLP +
Sbjct: 112 ----------ELADAP----LLILA-NKQDLPGA 130

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 8/49 (16%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPT 346
           ++L+L+G+S VGK+ L+ RF   +FH    STIG        + F M T
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIG--------VDFKMKT 41

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQEST 329
           K++LLG+SAVGKS LV RF+   +   Q ST
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLST 32

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 16/34 (47%), Positives = 25/34 (73%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +K++++G+S VGK+ L  RF  G+F E  E+TIG
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIG 36

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 22/113 (19%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +TV   +V  +F +WD  GQ++   L   YY   Q  I V D  ++D    A+   +
Sbjct: 43  FNVETVTYKNV--KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEAR---Q 97

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
           EL R+               +E++     + ++ +  NK DLP + +  E  E
Sbjct: 98  ELHRIIND------------REMR-----DALLLVFANKQDLPDAMKPHEIQE 133

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
           +YK+V+LG   VGKS+L ++FV G F E  + TI
Sbjct: 1   EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI 34

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
           K++++G   VGKSS++ RFV+G F +  + TIG +
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVD 36

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 17/34 (50%), Positives = 25/34 (73%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
           +YKLV+LG   VGKS+L ++FV+G F +  + TI
Sbjct: 1   EYKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTI 34

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 11/72 (15%)

Query: 290 QTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNR 349
           Q   ++ ++KL+L+G+  VGK++ V R + G+F +    T+G E    H + F       
Sbjct: 2   QQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEV---HPLKFY------ 52

Query: 350 LNNNVPITF-VW 360
             N  PI F VW
Sbjct: 53  -TNCGPICFNVW 63

Length = 215

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           ++F IWD  G+ +   L   YY N QA + V D +++D    A S + +L
Sbjct: 43  LKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKL 92

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 37/146 (25%), Positives = 54/146 (36%), Gaps = 29/146 (19%)

Query: 79  ITQTVCLDDVTI-----RFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK 133
           IT TV L+  TI     R   WD  GQE   +L   YY  +   I V D T+++ F  +K
Sbjct: 35  ITPTVGLNIGTIEVGKARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESK 94

Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG-E 192
           S  +++                  + L+      + + +  NK DLP +    E  E  +
Sbjct: 95  SAFEKVINN---------------EALE-----GVPLLVLANKQDLPDALSVAEIKEVFD 134

Query: 193 AYAEENG---LLFMETSAKTAMNVNE 215
                 G    L    SA     V E
Sbjct: 135 DCIALIGRRDCLVQPVSALEGEGVEE 160

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 299 KLVLLGESAVGKSSLVLRFVRGQF-HEYQESTIGG 332
           K+V+LG+ +VGK+SLV R+V  +F     ++TIG 
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGA 36

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +KL+++G+S VGKSSL+LRF    F     +TIG
Sbjct: 7   FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG 40

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +K+VL+G + VGK+ LV RF +G F   Q +TIG
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG 41

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
            YKLV++G   VGKS+L ++F++  F    + TI
Sbjct: 2   TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI 35

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 41/151 (27%)

Query: 85  LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144
           +D V++   +WDT G   +       Y  +   ++ + I + ++                
Sbjct: 61  VDGVSVSLRLWDTFGD--HDKDRRFAYGRSDVVLLCFSIASPNSLR-------------- 104

Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-------------PTSR-----RCV 186
            N+ T      W  E++   P   VI L G K DL             P +R       +
Sbjct: 105 -NVKTM-----WYPEIRHFCPRVPVI-LVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157

Query: 187 EYSEGEAYAEENGLLFMETSAKTAMNVNEIF 217
               G A A+E G+ + ETS  T   V ++F
Sbjct: 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
           K++LLG+  VGKSSL+ R+V  +F      TIG E
Sbjct: 7   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE 41

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
            YK+V+LG   VGKS+L ++FV+  F E  + TI
Sbjct: 1   DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTI 34

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 20/91 (21%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           ++F++WD  GQ         YY N  A I V D T++D  G +KS   EL  M       
Sbjct: 43  LKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGISKS---ELHAM------- 92

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLP 180
                     L+     + V+ +  NK D+P
Sbjct: 93  ----------LEEEELKDAVLLVFANKQDMP 113

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 33/143 (23%), Positives = 50/143 (34%), Gaps = 42/143 (29%)

Query: 86  DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPP 145
           + V     I DT+ + +         R A    +VY +    T  R              
Sbjct: 47  ERVPTT--IVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLER-------------- 90

Query: 146 NIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV-----------EYSEGEAY 194
            I T      W+  ++R+    + I L GNK+DL                  E+ E E  
Sbjct: 91  -IRTK-----WLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETC 143

Query: 195 AEENGLLFMETSAKTAMNVNEIF 217
                   +E SAKT +NV+E+F
Sbjct: 144 --------VECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	373
KOG0084|consensus	205		100.0
KOG0092|consensus	200		100.0
KOG0078|consensus	207		100.0
KOG0094|consensus	221		100.0
KOG0394|consensus	210		100.0
KOG0098|consensus	216		100.0
KOG0080|consensus	209		100.0
KOG0079|consensus	198		100.0
KOG0091|consensus	213		100.0
KOG0087|consensus	222		100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0093|consensus	193		100.0
KOG0086|consensus	214		100.0
KOG0088|consensus	218		100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0095|consensus	213		100.0
KOG0083|consensus	192		99.98
KOG0097|consensus	215		99.97
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.97
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.97
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.97
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.97
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.97
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.97
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.97
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.97
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.97
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.97
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.97
KOG0081|consensus	219		99.97
PLN03110	216	Rab GTPase; Provisional	99.97
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.97
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.97
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.97
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.96
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.96
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.96
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.96
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.96
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.96
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.96
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.96
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.96
PTZ00369	189	Ras-like protein; Provisional	99.96
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.96
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.96
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.96
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.96
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.96
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.96
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.96
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.96
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.96
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.96
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.96
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.96
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.96
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.96
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.96
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.96
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.95
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.95
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.95
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.95
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.95
PLN03108	210	Rab family protein; Provisional	99.95
PLN03118	211	Rab family protein; Provisional	99.95
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.95
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.95
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.95
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.95
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.95
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.95
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.95
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.95
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.95
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.95
KOG0395|consensus	196		99.94
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.94
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.94
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.94
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.94
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.94
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.94
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.94
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.94
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.94
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.94
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.93
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.93
KOG4252|consensus	246		99.93
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.93
KOG0393|consensus	198		99.93
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.93
PRK03003	472	GTP-binding protein Der; Reviewed	99.93
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.93
PTZ00099	176	rab6; Provisional	99.93
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.92
PLN00223	181	ADP-ribosylation factor; Provisional	99.92
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.92
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.92
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.92
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.92
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.92
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.92
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.91
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.91
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.91
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.91
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.91
PTZ00133	182	ADP-ribosylation factor; Provisional	99.91
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.91
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.91
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.91
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.9
PLN00023	334	GTP-binding protein; Provisional	99.89
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.89
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.89
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.88
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.88
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.88
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.87
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.86
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.86
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.86
PRK00093	435	GTP-binding protein Der; Reviewed	99.86
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.85
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.85
COG1100	219	GTPase SAR1 and related small G proteins [General	99.83
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.83
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.83
KOG1673|consensus	205		99.83
KOG0073|consensus	185		99.82
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.82
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.82
KOG0070|consensus	181		99.8
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.8
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.8
KOG0096|consensus	216		99.8
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.8
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.79
KOG3883|consensus	198		99.79
COG1160	444	Predicted GTPases [General function prediction onl	99.79
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.79
PRK04213	201	GTP-binding protein; Provisional	99.79
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.77
KOG4423|consensus	229		99.76
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.76
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.76
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.74
PRK11058	426	GTPase HflX; Provisional	99.74
KOG0075|consensus	186		99.74
PRK12299	335	obgE GTPase CgtA; Reviewed	99.74
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.73
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.73
PRK03003	472	GTP-binding protein Der; Reviewed	99.73
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.73
KOG0071|consensus	180		99.73
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.72
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.72
PRK15494	339	era GTPase Era; Provisional	99.72
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.71
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.71
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.71
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.7
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.69
cd00881	189	GTP_translation_factor GTP translation factor fami	99.69
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.69
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.69
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.67
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.67
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.67
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.67
PRK05433	600	GTP-binding protein LepA; Provisional	99.67
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.66
CHL00189	742	infB translation initiation factor 2; Provisional	99.65
KOG0076|consensus	197		99.65
PRK12297	424	obgE GTPase CgtA; Reviewed	99.65
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.62
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.62
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.62
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.61
PRK05306	787	infB translation initiation factor IF-2; Validated	99.6
KOG0074|consensus	185		99.6
PRK00089	292	era GTPase Era; Reviewed	99.59
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.59
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.58
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.58
COG2229	187	Predicted GTPase [General function prediction only	99.58
PRK12296	500	obgE GTPase CgtA; Reviewed	99.57
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.57
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.57
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.56
PRK00093	435	GTP-binding protein Der; Reviewed	99.56
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.55
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.55
PRK10218	607	GTP-binding protein; Provisional	99.54
KOG0072|consensus	182		99.54
KOG0084|consensus	205		99.54
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.54
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.53
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.53
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.52
PRK12317	425	elongation factor 1-alpha; Reviewed	99.51
PRK12289	352	GTPase RsgA; Reviewed	99.51
PRK12298	390	obgE GTPase CgtA; Reviewed	99.51
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.51
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.5
COG2262	411	HflX GTPases [General function prediction only]	99.5
PRK12288	347	GTPase RsgA; Reviewed	99.49
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.47
KOG0094|consensus	221		99.47
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.45
PRK04004	586	translation initiation factor IF-2; Validated	99.45
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.45
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.43
KOG1707|consensus	625		99.42
KOG0462|consensus	650		99.42
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.41
COG1159	298	Era GTPase [General function prediction only]	99.41
PRK00098	298	GTPase RsgA; Reviewed	99.4
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.39
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.39
COG1160	444	Predicted GTPases [General function prediction onl	99.37
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.36
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.36
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.36
PRK12736	394	elongation factor Tu; Reviewed	99.34
KOG0098|consensus	216		99.34
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.34
COG0486	454	ThdF Predicted GTPase [General function prediction	99.33
KOG0078|consensus	207		99.33
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.32
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.32
COG0218	200	Predicted GTPase [General function prediction only	99.32
PRK12735	396	elongation factor Tu; Reviewed	99.31
KOG0080|consensus	209		99.31
KOG0095|consensus	213		99.3
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.29
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	99.29
KOG0394|consensus	210		99.27
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.26
PRK13351	687	elongation factor G; Reviewed	99.26
PLN00043	447	elongation factor 1-alpha; Provisional	99.26
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.26
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.25
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.22
KOG0092|consensus	200		99.22
COG1162	301	Predicted GTPases [General function prediction onl	99.21
KOG0093|consensus	193		99.2
PLN03126	478	Elongation factor Tu; Provisional	99.2
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.2
KOG0079|consensus	198		99.2
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.18
CHL00071	409	tufA elongation factor Tu	99.18
KOG0077|consensus	193		99.18
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.18
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.17
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.17
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.16
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.16
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	99.15
KOG0087|consensus	222		99.15
PRK14845	1049	translation initiation factor IF-2; Provisional	99.14
PRK00049	396	elongation factor Tu; Reviewed	99.14
PLN03127	447	Elongation factor Tu; Provisional	99.13
KOG1423|consensus	379		99.13
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.12
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.11
KOG0086|consensus	214		99.1
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.1
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.08
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.08
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.08
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.07
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.07
KOG1145|consensus	683		99.06
KOG1489|consensus	366		99.06
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.05
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.04
COG1163	365	DRG Predicted GTPase [General function prediction	99.03
PTZ00141	446	elongation factor 1- alpha; Provisional	99.02
PRK09602	396	translation-associated GTPase; Reviewed	99.01
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.01
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.01
KOG0083|consensus	192		98.99
PRK13796	365	GTPase YqeH; Provisional	98.99
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	98.98
KOG0097|consensus	215		98.98
KOG0081|consensus	219		98.97
PRK12740	668	elongation factor G; Reviewed	98.97
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	98.97
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	98.97
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.96
KOG0393|consensus	198		98.95
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	98.93
KOG0091|consensus	213		98.93
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	98.92
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	98.9
PRK12739	691	elongation factor G; Reviewed	98.9
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.9
COG1084	346	Predicted GTPase [General function prediction only	98.89
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	98.89
KOG1191|consensus	531		98.89
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	98.89
PRK00007	693	elongation factor G; Reviewed	98.88
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	98.88
KOG1707|consensus	625		98.84
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	98.84
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	98.83
KOG0088|consensus	218		98.82
PRK01889	356	GTPase RsgA; Reviewed	98.81
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.8
KOG0705|consensus	749		98.79
PLN03110	216	Rab GTPase; Provisional	98.77
KOG0090|consensus	238		98.77
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	98.76
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	98.76
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	98.76
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.76
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	98.75
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.74
COG0536	369	Obg Predicted GTPase [General function prediction	98.74
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	98.74
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	98.73
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	98.73
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	98.72
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	98.72
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	98.71
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.71
PLN00023	334	GTP-binding protein; Provisional	98.7
COG3596	296	Predicted GTPase [General function prediction only	98.69
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.69
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	98.69
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	98.68
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.68
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	98.66
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.66
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	98.66
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	98.65
PRK07560	731	elongation factor EF-2; Reviewed	98.65
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.65
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.65
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	98.65
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.64
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	98.64
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.64
PTZ00369	189	Ras-like protein; Provisional	98.64
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.63
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	98.63
PLN03108	210	Rab family protein; Provisional	98.62
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.61
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	98.61
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.61
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	98.61
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	98.61
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	98.61
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	98.59
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.59
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	98.59
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.57
KOG0395|consensus	196		98.57
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.56
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	98.56
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	98.55
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	98.55
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.54
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.53
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.53
KOG3905|consensus	473		98.51
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.5
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.5
PLN03118	211	Rab family protein; Provisional	98.5
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.5
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	98.49
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	98.49
KOG4252|consensus	246		98.49
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.48
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.48
KOG4423|consensus	229		98.48
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.48
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.47
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	98.47
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.46
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	98.46
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	98.46
COG1100	219	GTPase SAR1 and related small G proteins [General	98.46
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	98.46
KOG1144|consensus	1064		98.45
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.44
KOG1490|consensus	620		98.44
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	98.44
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	98.43
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.43
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.42
PRK13768	253	GTPase; Provisional	98.42
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	98.41
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	98.4
PRK09866	741	hypothetical protein; Provisional	98.4
PTZ00416	836	elongation factor 2; Provisional	98.39
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	98.38
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.38
PTZ00258	390	GTP-binding protein; Provisional	98.35
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.34
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	98.32
KOG1673|consensus	205		98.32
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.3
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.3
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	98.29
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.28
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.26
KOG3886|consensus	295		98.26
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	98.22
COG1161	322	Predicted GTPases [General function prediction onl	98.2
KOG0458|consensus	603		98.19
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.19
KOG0410|consensus	410		98.17
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	98.17
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	98.16
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.15
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.14
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.14
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	98.13
KOG0468|consensus	971		98.12
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.11
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.11
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	98.09
KOG0461|consensus	522		98.08
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	98.08
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	98.07
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	98.06
PTZ00133	182	ADP-ribosylation factor; Provisional	98.06
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	98.05
PRK09601	364	GTP-binding protein YchF; Reviewed	98.05
PLN00223	181	ADP-ribosylation factor; Provisional	98.04
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.03
KOG0096|consensus	216		98.02
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	98.01
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.97
KOG1532|consensus	366		97.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	97.96
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.95
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	97.95
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	97.95
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	97.95
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	97.86
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	97.85
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	97.82
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.79
KOG1424|consensus	562		97.79
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.78
KOG1486|consensus	364		97.77
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	97.76
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	97.76
KOG1954|consensus	532		97.74
KOG1143|consensus	591		97.74
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.72
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.71
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	97.69
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	97.69
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	97.68
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	97.67
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	97.64
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	97.59
KOG0467|consensus	887		97.58
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	97.58
COG0012	372	Predicted GTPase, probable translation factor [Tra	97.48
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.47
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	97.46
KOG0082|consensus	354		97.43
smart00178	184	SAR Sar1p-like members of the Ras-family of small	97.42
KOG2486|consensus	320		97.38
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	97.37
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	97.36
PRK04213	201	GTP-binding protein; Provisional	97.35
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	97.35
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	97.35
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	97.34
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.3
KOG2484|consensus	435		97.29
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	97.27
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	97.25
KOG1547|consensus	336		97.24
KOG0073|consensus	185		97.23
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.22
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	97.2
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.14
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	97.13
KOG2423|consensus	572		97.11
KOG0070|consensus	181		97.11
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	97.07
KOG0469|consensus	842		97.07
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	96.99
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	96.9
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	96.87
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	96.85
KOG0448|consensus	749		96.83
KOG4273|consensus	418		96.81

>KOG0084|consensus

Probab=100.00  E-value=1.1e-39  Score=278.59  Aligned_cols=164  Identities=38%  Similarity=0.637  Sum_probs=153.5

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..|++++|+   |||||+.||.++.|.+.   |+|+||..+.++++|+.++++||||+|||||+.+..+|||+|+|+|+|
T Consensus         9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~v   88 (205)
T KOG0084|consen    9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFV   88 (205)
T ss_pred             EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEE
Confidence            456777776   99999999999999998   999999999999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||+++++||+.+.+|+.++.+                     +...++|.+|||||+|+.+. +.++.++++.|+..+++
T Consensus        89 yDiT~~~SF~~v~~Wi~Ei~~---------------------~~~~~v~~lLVGNK~Dl~~~-~~v~~~~a~~fa~~~~~  146 (205)
T KOG0084|consen   89 YDITKQESFNNVKRWIQEIDR---------------------YASENVPKLLVGNKCDLTEK-RVVSTEEAQEFADELGI  146 (205)
T ss_pred             EEcccHHHhhhHHHHHHHhhh---------------------hccCCCCeEEEeeccccHhh-eecCHHHHHHHHHhcCC
Confidence            999999999999999999988                     56778999999999999887 89999999999999999


Q ss_pred             e-EEEEcCCCCCCHHHHHHHHHHHcchhhccCC
Q psy18160        201 L-FMETSAKTAMNVNEIFVEIAKKLPKKEVNNG  232 (373)
Q Consensus       201 ~-~~evSak~~~gI~~lf~~L~~~i~~~~~~~~  232 (373)
                      + |+|+|||++.||+++|..|+..+..++....
T Consensus       147 ~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~  179 (205)
T KOG0084|consen  147 PIFLETSAKDSTNVEDAFLTLAKELKQRKGLHV  179 (205)
T ss_pred             cceeecccCCccCHHHHHHHHHHHHHHhcccCC
Confidence            9 9999999999999999999999987765433

>KOG0092|consensus

Probab=100.00  E-value=1.4e-38  Score=270.83  Aligned_cols=165  Identities=58%  Similarity=0.865  Sum_probs=154.9

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..+|+|+||+   |||||+.||..+.|.+.   |||..|..+.+.+++..++|.||||+|||+|.++.+.|||+|+++|+
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv   83 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV   83 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence            3579999998   99999999999999996   99999999999999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||+++.+||..++.|+.++.+                     ...+++.+.|||||+||.+. |.|..++++.+|+..|
T Consensus        84 vYDit~~~SF~~aK~WvkeL~~---------------------~~~~~~vialvGNK~DL~~~-R~V~~~ea~~yAe~~g  141 (200)
T KOG0092|consen   84 VYDITDEESFEKAKNWVKELQR---------------------QASPNIVIALVGNKADLLER-REVEFEEAQAYAESQG  141 (200)
T ss_pred             EEecccHHHHHHHHHHHHHHHh---------------------hCCCCeEEEEecchhhhhhc-ccccHHHHHHHHHhcC
Confidence            9999999999999999999988                     55688999999999999886 8899999999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcchhhccCC
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNG  232 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~  232 (373)
                      +.|||+|||++.||+++|..|++.+........
T Consensus       142 ll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~  174 (200)
T KOG0092|consen  142 LLFFETSAKTGENVNEIFQAIAEKLPCSDPQER  174 (200)
T ss_pred             CEEEEEecccccCHHHHHHHHHHhccCcccccc
Confidence            999999999999999999999999987655433

>KOG0078|consensus

Probab=100.00  E-value=2.8e-37  Score=267.68  Aligned_cols=166  Identities=36%  Similarity=0.607  Sum_probs=155.5

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      +....++++++|+   |||+|+.||..+.|...   |+|+||..+++.+++..+.+++|||+|||+|+.+...||++|++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            4455677888887   99999999999999988   99999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE  196 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~  196 (373)
                      +++|||+++..||+++..|+..+.+                     +..+++|++|||||+|+... |+|+.+.++++|.
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e---------------------~a~~~v~~~LvGNK~D~~~~-R~V~~e~ge~lA~  145 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDE---------------------HASDDVVKILVGNKCDLEEK-RQVSKERGEALAR  145 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHh---------------------hCCCCCcEEEeecccccccc-ccccHHHHHHHHH
Confidence            9999999999999999999999998                     56679999999999999886 9999999999999


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhcc
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN  230 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~  230 (373)
                      ++|++|+|+|||+|.||+++|..|++.+.++...
T Consensus       146 e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  146 EYGIKFFETSAKTNFNIEEAFLSLARDILQKLED  179 (207)
T ss_pred             HhCCeEEEccccCCCCHHHHHHHHHHHHHhhcch
Confidence            9999999999999999999999999999865544

>KOG0094|consensus

Probab=100.00  E-value=1.1e-36  Score=259.17  Aligned_cols=163  Identities=37%  Similarity=0.633  Sum_probs=152.5

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ...|+|+||+   |||||++||..+.|...   |||+||..+++.+.+..++|++|||+|||+|+.+.+.|+|+++++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            4489999998   99999999999999988   99999999999999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++|..||++..+|++.+.+.                    ....++-++|||||.||.+. ++++.+|++..|++++
T Consensus       101 VyDit~~~Sfe~t~kWi~dv~~e--------------------~gs~~viI~LVGnKtDL~dk-rqvs~eEg~~kAkel~  159 (221)
T KOG0094|consen  101 VYDITDRNSFENTSKWIEDVRRE--------------------RGSDDVIIFLVGNKTDLSDK-RQVSIEEGERKAKELN  159 (221)
T ss_pred             EEeccccchHHHHHHHHHHHHhc--------------------cCCCceEEEEEcccccccch-hhhhHHHHHHHHHHhC
Confidence            99999999999999999999872                    33446889999999999987 9999999999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      ..|+++||+.|.||.++|..|+..+.....
T Consensus       160 a~f~etsak~g~NVk~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  160 AEFIETSAKAGENVKQLFRRIAAALPGMEV  189 (221)
T ss_pred             cEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence            999999999999999999999998876644

>KOG0394|consensus

Probab=100.00  E-value=3.7e-36  Score=253.53  Aligned_cols=174  Identities=34%  Similarity=0.576  Sum_probs=157.5

Q ss_pred             ccCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhcc
Q psy18160         39 MSGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYR  112 (373)
Q Consensus        39 ~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~  112 (373)
                      |....+....+++++|+   |||||+|+|.+.+|...   |||.+|..|.+.++++.+.++||||+|||+|.++.-.+||
T Consensus         1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR   80 (210)
T KOG0394|consen    1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR   80 (210)
T ss_pred             CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence            34555667799999998   99999999999999988   9999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-CcccCHHHH
Q psy18160        113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-RRCVEYSEG  191 (373)
Q Consensus       113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-~~~v~~~e~  191 (373)
                      +||++++|||+++++||+.+..|.+++.....+                 ..+...|.||+|||.|+... .|+|+.+.+
T Consensus        81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~-----------------~~Pe~FPFVilGNKiD~~~~~~r~VS~~~A  143 (210)
T KOG0394|consen   81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASP-----------------QDPETFPFVILGNKIDVDGGKSRQVSEKKA  143 (210)
T ss_pred             CCceEEEEeecCChhhhccHHHHHHHHHHhcCC-----------------CCCCcccEEEEcccccCCCCccceeeHHHH
Confidence            999999999999999999999999998874433                 34568999999999999763 488999999


Q ss_pred             HHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        192 EAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       192 ~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      ++|++..| +||||+|||...||+++|+.+++.+.....
T Consensus       144 q~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  144 QTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANED  182 (210)
T ss_pred             HHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccc
Confidence            99998876 899999999999999999999998876553

>KOG0098|consensus

Probab=100.00  E-value=5.5e-36  Score=252.90  Aligned_cols=161  Identities=40%  Similarity=0.676  Sum_probs=153.0

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|+   |||+|+.||+.+.|.+.   |+|++|..+.+.++++.++++||||+|||.|+++.+.||++|.++|||
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLV   85 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLV   85 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEE
Confidence            478888888   99999999999999998   999999999999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++.++||..+..|+.+++.                     +..+++.++|+|||+||... |.|+.+|+++||+++|+
T Consensus        86 ydit~r~sF~hL~~wL~D~rq---------------------~~~~NmvImLiGNKsDL~~r-R~Vs~EEGeaFA~ehgL  143 (216)
T KOG0098|consen   86 YDITRRESFNHLTSWLEDARQ---------------------HSNENMVIMLIGNKSDLEAR-REVSKEEGEAFAREHGL  143 (216)
T ss_pred             EEccchhhHHHHHHHHHHHHH---------------------hcCCCcEEEEEcchhhhhcc-ccccHHHHHHHHHHcCc
Confidence            999999999999999999988                     45689999999999999876 89999999999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      .|+|+||++++||+|+|...+..+.++.+
T Consensus       144 ifmETSakt~~~VEEaF~nta~~Iy~~~q  172 (216)
T KOG0098|consen  144 IFMETSAKTAENVEEAFINTAKEIYRKIQ  172 (216)
T ss_pred             eeehhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987654

>KOG0080|consensus

Probab=100.00  E-value=2.7e-34  Score=236.69  Aligned_cols=162  Identities=35%  Similarity=0.583  Sum_probs=150.8

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|.   |||||+.||+.+.|.+.   |||+||..+.+.++|+.+++-||||+|||+|+.+.+.||++|.++|+
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl   89 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL   89 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence            4478888887   99999999999999988   89999999999999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++.+++|..+..|+.++..+                    ...+++..++||||.|...+ |.|+.+|+.+||++++
T Consensus        90 VYDVT~Rdtf~kLd~W~~Eld~Y--------------------stn~diikmlVgNKiDkes~-R~V~reEG~kfAr~h~  148 (209)
T KOG0080|consen   90 VYDVTSRDTFVKLDIWLKELDLY--------------------STNPDIIKMLVGNKIDKESE-RVVDREEGLKFARKHR  148 (209)
T ss_pred             EEEccchhhHHhHHHHHHHHHhh--------------------cCCccHhHhhhcccccchhc-ccccHHHHHHHHHhhC
Confidence            99999999999999999999874                    34478889999999997665 8999999999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      +-|+|+|||+.+||+..|++|+..|.+-.
T Consensus       149 ~LFiE~SAkt~~~V~~~FeelveKIi~tp  177 (209)
T KOG0080|consen  149 CLFIECSAKTRENVQCCFEELVEKIIETP  177 (209)
T ss_pred             cEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence            99999999999999999999999987643

>KOG0079|consensus

Probab=100.00  E-value=6.6e-35  Score=237.08  Aligned_cols=158  Identities=31%  Similarity=0.550  Sum_probs=148.9

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .+.+++|+   |||+|+.||..+.|..+   |+|+||..+++.++|..++++||||+|+|+|+.+...||++.+++++||
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY   88 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY   88 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence            45677887   99999999999999988   9999999999999999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |+++.+||.++.+|+++++.                      ..+.+|-+|||||.|+++. +.+..++++.||...|+.
T Consensus        89 DVTn~ESF~Nv~rWLeei~~----------------------ncdsv~~vLVGNK~d~~~R-rvV~t~dAr~~A~~mgie  145 (198)
T KOG0079|consen   89 DVTNGESFNNVKRWLEEIRN----------------------NCDSVPKVLVGNKNDDPER-RVVDTEDARAFALQMGIE  145 (198)
T ss_pred             ECcchhhhHhHHHHHHHHHh----------------------cCccccceecccCCCCccc-eeeehHHHHHHHHhcCch
Confidence            99999999999999999987                      4568899999999999876 889999999999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      +||+|||.+.|++..|.-|.+++.+..
T Consensus       146 ~FETSaKe~~NvE~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  146 LFETSAKENENVEAMFHCITKQVLQAK  172 (198)
T ss_pred             heehhhhhcccchHHHHHHHHHHHHHH
Confidence            999999999999999999999887654

>KOG0091|consensus

Probab=100.00  E-value=2.9e-34  Score=237.13  Aligned_cols=164  Identities=32%  Similarity=0.555  Sum_probs=148.6

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEE-CCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCL-DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..+.+++|+   |||||+++|+.++|.+-   |+|+||+.+.+++ +|..+++++|||+|||+|+++.+.||+++-++++
T Consensus         8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll   87 (213)
T KOG0091|consen    8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL   87 (213)
T ss_pred             EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence            368899998   99999999999999877   9999999998888 6789999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++|++||+++..|+.+...+.                   ..+..+..+|||+|+||... |+|+.+|++++|+.+|
T Consensus        88 vyditnr~sfehv~~w~~ea~m~~-------------------q~P~k~VFlLVGhKsDL~Sq-RqVt~EEaEklAa~hg  147 (213)
T KOG0091|consen   88 VYDITNRESFEHVENWVKEAAMAT-------------------QGPDKVVFLLVGHKSDLQSQ-RQVTAEEAEKLAASHG  147 (213)
T ss_pred             EEeccchhhHHHHHHHHHHHHHhc-------------------CCCCeeEEEEeccccchhhh-ccccHHHHHHHHHhcC
Confidence            999999999999999999987631                   12345668899999999877 9999999999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcchhhcc
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVN  230 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~~~  230 (373)
                      +.|+|+||++|.||++.|.-|++.+..+..+
T Consensus       148 M~FVETSak~g~NVeEAF~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  148 MAFVETSAKNGCNVEEAFDMLAQEIFQAIQQ  178 (213)
T ss_pred             ceEEEecccCCCcHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999988765443

>KOG0087|consensus

Probab=100.00  E-value=3.1e-33  Score=241.35  Aligned_cols=163  Identities=39%  Similarity=0.618  Sum_probs=151.1

Q ss_pred             CCCc-EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         44 QSDC-MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        44 ~~~~-i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      .+++ .|+|++|+   |||-|+.||..++|...   |||++|..+.+.++++.++.+||||+|||+|+++...||++|.|
T Consensus        10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG   89 (222)
T KOG0087|consen   10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG   89 (222)
T ss_pred             ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence            4455 45556665   99999999999999988   99999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE  196 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~  196 (373)
                      +++|||++.+.+|+++.+||.+++.                     +..++++++|||||+||.+. |.|+.++++.+|+
T Consensus        90 AllVYDITr~~Tfenv~rWL~ELRd---------------------had~nivimLvGNK~DL~~l-raV~te~~k~~Ae  147 (222)
T KOG0087|consen   90 ALLVYDITRRQTFENVERWLKELRD---------------------HADSNIVIMLVGNKSDLNHL-RAVPTEDGKAFAE  147 (222)
T ss_pred             eEEEEechhHHHHHHHHHHHHHHHh---------------------cCCCCeEEEEeecchhhhhc-cccchhhhHhHHH
Confidence            9999999999999999999999988                     66789999999999999885 8999999999999


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      ..++.|+|+||.++.||+++|+.++..|.+.-
T Consensus       148 ~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~v  179 (222)
T KOG0087|consen  148 KEGLFFLETSALDATNVEKAFERVLTEIYKIV  179 (222)
T ss_pred             hcCceEEEecccccccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998887543

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.5e-32  Score=245.64  Aligned_cols=157  Identities=35%  Similarity=0.600  Sum_probs=143.0

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      .++++|+   |||||++||..+.|...   |+|.++..+.+.+++..+.+++|||+|+++|..++..|++++|++|+|||
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD   81 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD   81 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence            4788887   99999999999999775   99999998999999999999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc-CCe
Q psy18160        123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN-GLL  201 (373)
Q Consensus       123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~-~~~  201 (373)
                      +++++||+++..|+..+..                     ....++|++|||||+|+... +.+..++++++++.+ ++.
T Consensus        82 vtd~~Sf~~l~~w~~~i~~---------------------~~~~~~piilVgNK~DL~~~-~~v~~~~~~~~a~~~~~~~  139 (202)
T cd04120          82 ITKKETFDDLPKWMKMIDK---------------------YASEDAELLLVGNKLDCETD-REISRQQGEKFAQQITGMR  139 (202)
T ss_pred             CcCHHHHHHHHHHHHHHHH---------------------hCCCCCcEEEEEECcccccc-cccCHHHHHHHHHhcCCCE
Confidence            9999999999999988766                     33467999999999999765 778899999999885 789


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      |+++||++|.||+++|++|++.+.+.
T Consensus       140 ~~etSAktg~gV~e~F~~l~~~~~~~  165 (202)
T cd04120         140 FCEASAKDNFNVDEIFLKLVDDILKK  165 (202)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999888654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0093|consensus

Probab=100.00  E-value=2.6e-33  Score=227.60  Aligned_cols=163  Identities=31%  Similarity=0.542  Sum_probs=149.9

Q ss_pred             CCcE-EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         45 SDCM-AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        45 ~~~i-~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      .+++ |+.++|+   |||||+.|++++.|.+.   |.|++|..|++.-.++++.+++|||+|+|+|+.+...||++|+++
T Consensus        18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf   97 (193)
T KOG0093|consen   18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   97 (193)
T ss_pred             ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence            3444 5566666   99999999999999988   999999999998888999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160        118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE  197 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~  197 (373)
                      |++||++|.+||..++.|...+..                     ....++|+||||||||+.++ |.++.+.++.++.+
T Consensus        98 iLmyDitNeeSf~svqdw~tqIkt---------------------ysw~naqvilvgnKCDmd~e-Rvis~e~g~~l~~~  155 (193)
T KOG0093|consen   98 ILMYDITNEESFNSVQDWITQIKT---------------------YSWDNAQVILVGNKCDMDSE-RVISHERGRQLADQ  155 (193)
T ss_pred             EEEEecCCHHHHHHHHHHHHHhee---------------------eeccCceEEEEecccCCccc-eeeeHHHHHHHHHH
Confidence            999999999999999999998877                     45679999999999999887 99999999999999


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      +|+.|||+|||.+.||+++|+.++..+-+++.
T Consensus       156 LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kms  187 (193)
T KOG0093|consen  156 LGFEFFETSAKENINVKQVFERLVDIICDKMS  187 (193)
T ss_pred             hChHHhhhcccccccHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999988876554

>KOG0086|consensus

Probab=100.00  E-value=1.7e-33  Score=230.01  Aligned_cols=161  Identities=36%  Similarity=0.633  Sum_probs=150.3

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||+|+++|+..+|.+.   |+|++|..+.+.+.++.++++||||+|||+|++..+.||++|.++++||
T Consensus        10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVY   89 (214)
T KOG0086|consen   10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   89 (214)
T ss_pred             heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEE
Confidence            56666665   99999999999999988   9999999999999999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |+++++||+.+..|+..++.                     ...+++.++++|||.||..+ |+|+..|+.+|+.+..+.
T Consensus        90 D~TsrdsfnaLtnWL~DaR~---------------------lAs~nIvviL~GnKkDL~~~-R~VtflEAs~FaqEnel~  147 (214)
T KOG0086|consen   90 DITSRDSFNALTNWLTDART---------------------LASPNIVVILCGNKKDLDPE-REVTFLEASRFAQENELM  147 (214)
T ss_pred             eccchhhHHHHHHHHHHHHh---------------------hCCCcEEEEEeCChhhcChh-hhhhHHHHHhhhccccee
Confidence            99999999999999999988                     56789999999999999887 899999999999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcchhhcc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLPKKEVN  230 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~~~~~~  230 (373)
                      +.|+||++|+||+|.|-..++.+..+-+.
T Consensus       148 flETSa~TGeNVEEaFl~c~~tIl~kIE~  176 (214)
T KOG0086|consen  148 FLETSALTGENVEEAFLKCARTILNKIES  176 (214)
T ss_pred             eeeecccccccHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999888766543

>KOG0088|consensus

Probab=100.00  E-value=1.9e-33  Score=231.02  Aligned_cols=160  Identities=38%  Similarity=0.635  Sum_probs=148.9

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      -.+++|++|.   |||||+-||+.++|...   |+-..|..+.+.+.+....+.||||+|||+|..+.+.||++++++++
T Consensus        12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL   91 (218)
T KOG0088|consen   12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL   91 (218)
T ss_pred             eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence            4578888886   99999999999999988   88889999999999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++|++||+.++.|..+++.                     .....+.++|||||.||.++ |.|+.++++++|+..|
T Consensus        92 VyDITDrdSFqKVKnWV~Elr~---------------------mlGnei~l~IVGNKiDLEee-R~Vt~qeAe~YAesvG  149 (218)
T KOG0088|consen   92 VYDITDRDSFQKVKNWVLELRT---------------------MLGNEIELLIVGNKIDLEEE-RQVTRQEAEAYAESVG  149 (218)
T ss_pred             EEeccchHHHHHHHHHHHHHHH---------------------HhCCeeEEEEecCcccHHHh-hhhhHHHHHHHHHhhc
Confidence            9999999999999999999887                     45567899999999999877 9999999999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      ..|+++||+.+.||.++|+.|...+.+.
T Consensus       150 A~y~eTSAk~N~Gi~elFe~Lt~~MiE~  177 (218)
T KOG0088|consen  150 ALYMETSAKDNVGISELFESLTAKMIEH  177 (218)
T ss_pred             hhheecccccccCHHHHHHHHHHHHHHH
Confidence            9999999999999999999998877654

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=8.3e-32  Score=238.64  Aligned_cols=161  Identities=30%  Similarity=0.479  Sum_probs=146.7

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|+   |||||+++|.++.|...   |++.++..+.+.+++..+.+++|||+|+++|..+++.+++++|++|+
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill   84 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL   84 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence            4589999998   99999999999988765   78888888889999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++++.||+++..|+.++..                     . .+++|++|||||+|+.+. +.++.++++++++.++
T Consensus        85 VfD~t~~~Sf~~~~~w~~~i~~---------------------~-~~~~piilVGNK~DL~~~-~~v~~~~~~~~a~~~~  141 (189)
T cd04121          85 VYDITNRWSFDGIDRWIKEIDE---------------------H-APGVPKILVGNRLHLAFK-RQVATEQAQAYAERNG  141 (189)
T ss_pred             EEECcCHHHHHHHHHHHHHHHH---------------------h-CCCCCEEEEEECccchhc-cCCCHHHHHHHHHHcC
Confidence            9999999999999999999876                     2 257999999999999765 6789999999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      ++|+|+||++|.||+++|++|++.+..+..
T Consensus       142 ~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~  171 (189)
T cd04121         142 MTFFEVSPLCNFNITESFTELARIVLMRHG  171 (189)
T ss_pred             CEEEEecCCCCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999988875443

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0095|consensus

Probab=100.00  E-value=9.6e-33  Score=224.80  Aligned_cols=162  Identities=33%  Similarity=0.611  Sum_probs=146.2

Q ss_pred             CCCcE-EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         44 QSDCM-AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        44 ~~~~i-~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      +++.. ++|++|.   |||+|++||..+-|.+.   |+|++|..++++++++.++++||||+|||+|+++...||+.|++
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha   82 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA   82 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence            34444 5555554   99999999999999988   99999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE  196 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~  196 (373)
                      +|+|||++-.+||+-+.+|+.+++.                     +....+-.|+||||.|+.+. |.++...+++|++
T Consensus        83 lilvydiscqpsfdclpewlreie~---------------------yan~kvlkilvgnk~d~~dr-revp~qigeefs~  140 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLPEWLREIEQ---------------------YANNKVLKILVGNKIDLADR-REVPQQIGEEFSE  140 (213)
T ss_pred             EEEEEecccCcchhhhHHHHHHHHH---------------------HhhcceEEEeeccccchhhh-hhhhHHHHHHHHH
Confidence            9999999999999999999999998                     34567778999999999876 7899999999999


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      ...+-|.|+||+..+||+.||..++.++...
T Consensus       141 ~qdmyfletsakea~nve~lf~~~a~rli~~  171 (213)
T KOG0095|consen  141 AQDMYFLETSAKEADNVEKLFLDLACRLISE  171 (213)
T ss_pred             hhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Confidence            9888899999999999999999988776543

>KOG0083|consensus

Probab=99.98  E-value=3.5e-33  Score=223.32  Aligned_cols=156  Identities=37%  Similarity=0.657  Sum_probs=145.8

Q ss_pred             EEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECC
Q psy18160         52 WLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDIT  124 (373)
Q Consensus        52 vlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~  124 (373)
                      ++|+   |||+|+-||..+.|...    |+|.+|..+.+.++++.+++++|||+|||+|++....||+.||+.+++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            5677   99999999999988876    9999999999999999999999999999999999999999999999999999


Q ss_pred             CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEE
Q psy18160        125 NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFME  204 (373)
Q Consensus       125 ~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~e  204 (373)
                      ++.||++++.|+.++.+                     +....+.+.++|||+|+..+ |.+..++++++++.+++||.|
T Consensus        82 nkasfdn~~~wlsei~e---------------------y~k~~v~l~llgnk~d~a~e-r~v~~ddg~kla~~y~ipfme  139 (192)
T KOG0083|consen   82 NKASFDNCQAWLSEIHE---------------------YAKEAVALMLLGNKCDLAHE-RAVKRDDGEKLAEAYGIPFME  139 (192)
T ss_pred             cchhHHHHHHHHHHHHH---------------------HHHhhHhHhhhccccccchh-hccccchHHHHHHHHCCCcee
Confidence            99999999999999998                     45567889999999999776 889999999999999999999


Q ss_pred             EcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        205 TSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       205 vSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      +|||+|.||+..|..|++++.+..-
T Consensus       140 tsaktg~nvd~af~~ia~~l~k~~~  164 (192)
T KOG0083|consen  140 TSAKTGFNVDLAFLAIAEELKKLKM  164 (192)
T ss_pred             ccccccccHhHHHHHHHHHHHHhcc
Confidence            9999999999999999999876543

>KOG0097|consensus

Probab=99.97  E-value=3.4e-31  Score=214.01  Aligned_cols=160  Identities=39%  Similarity=0.675  Sum_probs=149.1

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .++.+++|+   |||+|+++|...+|...   |+|++|..+.+++.|..++++||||+|||+|+...+.||+++.+.+.|
T Consensus        11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmv   90 (215)
T KOG0097|consen   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   90 (215)
T ss_pred             eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEE
Confidence            356677777   99999999999999888   999999999999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++.+.++.++..|+...+.                     ...++..++++|||.||..+ |.++.+++.+|++++|+
T Consensus        91 yditrrstynhlsswl~dar~---------------------ltnpnt~i~lignkadle~q-rdv~yeeak~faeengl  148 (215)
T KOG0097|consen   91 YDITRRSTYNHLSSWLTDARN---------------------LTNPNTVIFLIGNKADLESQ-RDVTYEEAKEFAEENGL  148 (215)
T ss_pred             EEehhhhhhhhHHHHHhhhhc---------------------cCCCceEEEEecchhhhhhc-ccCcHHHHHHHHhhcCe
Confidence            999999999999999988877                     45688999999999999877 88999999999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      .|.|+|||+|.||++.|.+.++++.+.-
T Consensus       149 ~fle~saktg~nvedafle~akkiyqni  176 (215)
T KOG0097|consen  149 MFLEASAKTGQNVEDAFLETAKKIYQNI  176 (215)
T ss_pred             EEEEecccccCcHHHHHHHHHHHHHHhh
Confidence            9999999999999999999988887653

>cd04133 Rop_like Rop subfamily

Probab=99.97  E-value=1.1e-30  Score=228.90  Aligned_cols=155  Identities=29%  Similarity=0.525  Sum_probs=138.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|+   |||||+.||+.+.|...   |++..+ .+.+.+++..+.++||||+|+++|..++..+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            68999998   99999999999999865   888776 567888999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC---------cccCHHHH
Q psy18160        122 DITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR---------RCVEYSEG  191 (373)
Q Consensus       122 D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~---------~~v~~~e~  191 (373)
                      |+++++||+++ ..|+..+..                     . .+++|++|||||+|+.+..         +.++.+++
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~---------------------~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~  138 (176)
T cd04133          81 SLISRASYENVLKKWVPELRH---------------------Y-APNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQG  138 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHH---------------------h-CCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHH
Confidence            99999999998 689988866                     2 2579999999999996541         34889999


Q ss_pred             HHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        192 EAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       192 ~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      .++++.+++ .|+|+||++|.||+++|+.+++.+.
T Consensus       139 ~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~  173 (176)
T cd04133         139 EELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL  173 (176)
T ss_pred             HHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence            999999998 6999999999999999999998764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.97  E-value=1.5e-30  Score=229.35  Aligned_cols=157  Identities=26%  Similarity=0.448  Sum_probs=139.4

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|+   |||||++||..+.|...   |++.++ .+.+.+++..+.++||||+|+++|..+++.+++++|++++
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il   82 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   82 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence            4578999998   99999999999999776   888766 4778899999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccC
Q psy18160        120 VYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVE  187 (373)
Q Consensus       120 v~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~  187 (373)
                      |||++++.||+++ ..|+..+..                     . .+++|++|||||+||.+.           .+.++
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~---------------------~-~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~  140 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQE---------------------F-CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVS  140 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHH---------------------H-CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCC
Confidence            9999999999997 789998876                     2 257899999999999641           24689


Q ss_pred             HHHHHHHHHHcCC-eEEEEcCCCCCC-HHHHHHHHHHHcc
Q psy18160        188 YSEGEAYAEENGL-LFMETSAKTAMN-VNEIFVEIAKKLP  225 (373)
Q Consensus       188 ~~e~~~~~~~~~~-~~~evSak~~~g-I~~lf~~L~~~i~  225 (373)
                      .++++++|+.+++ +|+||||++|.| |+++|..+++...
T Consensus       141 ~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         141 YDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             HHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence            9999999999995 899999999998 9999999887543

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.97  E-value=6.1e-30  Score=229.02  Aligned_cols=163  Identities=26%  Similarity=0.461  Sum_probs=143.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC-CEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~-~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ++++++|.   |||||+++|+++.|...   |+|.++..+.+.++ +..+.+.+|||+|+++|..+++.+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            47899998   99999999999988765   99999988888888 8899999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC-
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG-  199 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~-  199 (373)
                      ||+++++||+.+..|+..+.....                 .....++|++|||||+|+.+. +.+..+++.++++..+ 
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~-----------------~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~  142 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVT-----------------LPNGEPIPCLLLANKCDLKKR-LAKDGEQMDQFCKENGF  142 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhc-----------------ccCCCCCcEEEEEECCCcccc-cccCHHHHHHHHHHcCC
Confidence            999999999999999988865210                 012367899999999999754 6688899999999998 


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      .+|+++||++|.||+++|++|++.+.+..
T Consensus       143 ~~~~e~Sak~~~~v~e~f~~l~~~l~~~~  171 (201)
T cd04107         143 IGWFETSAKEGINIEEAMRFLVKNILAND  171 (201)
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999887653

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01875 RhoG RhoG subfamily

Probab=99.97  E-value=7.7e-30  Score=226.62  Aligned_cols=157  Identities=24%  Similarity=0.434  Sum_probs=137.5

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .++++++|+   |||||++||..+.|...   |++..+ .+.+.+++..+.++||||+|+++|..+++.|++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            378999998   99999999999999665   888665 45677899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------cccCH
Q psy18160        121 YDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RCVEY  188 (373)
Q Consensus       121 ~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------~~v~~  188 (373)
                      ||++++.||+++. .|+..+..                      ..+++|++|||||+||.+..           +.++.
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~----------------------~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~  139 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCH----------------------HCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITP  139 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh----------------------hCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCH
Confidence            9999999999997 58877765                      12579999999999996541           24677


Q ss_pred             HHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        189 SEGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       189 ~e~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ++++++++.++ ++|+|+||++|.||+++|++|++.+..
T Consensus       140 ~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         140 QQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             HHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence            89999999998 599999999999999999999988763

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04131 Rnd Rnd subfamily

Probab=99.97  E-value=5.5e-30  Score=225.02  Aligned_cols=155  Identities=27%  Similarity=0.474  Sum_probs=137.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|+   |||||+++|.++.|...   |++.++ .+.+.+++..+.+++|||+|+++|..+++.+++++|++|+||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            68999998   99999999999998766   887776 467889999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccCHH
Q psy18160        122 DITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVEYS  189 (373)
Q Consensus       122 D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~~~  189 (373)
                      |+++++||+++ ..|+..+.+                     . .+++|++|||||+||.++           .+.++.+
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~---------------------~-~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~  138 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQE---------------------F-CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYE  138 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHH---------------------H-CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHH
Confidence            99999999996 789988876                     2 257899999999999641           2468999


Q ss_pred             HHHHHHHHcCC-eEEEEcCCCCCC-HHHHHHHHHHHcc
Q psy18160        190 EGEAYAEENGL-LFMETSAKTAMN-VNEIFVEIAKKLP  225 (373)
Q Consensus       190 e~~~~~~~~~~-~~~evSak~~~g-I~~lf~~L~~~i~  225 (373)
                      +++++|+.+++ +|+|+||++|+| |+++|..+++...
T Consensus       139 e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         139 QGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             HHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence            99999999997 899999999995 9999999988543

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04126 Rab20 Rab20 subfamily

Probab=99.97  E-value=6.1e-30  Score=231.53  Aligned_cols=179  Identities=27%  Similarity=0.419  Sum_probs=145.3

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      ++++++|.   |||||+++|+.++|...  |+|.++..+.+    ..+.+.||||+|+++|..++..+++++|++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            47889997   99999999999998765  88877755443    46789999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC------------------CCc
Q psy18160        123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT------------------SRR  184 (373)
Q Consensus       123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~------------------~~~  184 (373)
                      +++++||+++..|+..+.+                     ...+++|++|||||+|+.+                  ..+
T Consensus        77 vt~~~Sf~~l~~~~~~l~~---------------------~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r  135 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTD---------------------TANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQR  135 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECcccccccccccccccccccccccccc
Confidence            9999999999988777665                     2345789999999999965                  137


Q ss_pred             ccCHHHHHHHHHHcC--------------CeEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCC---Ccccc-ccCCCC
Q psy18160        185 CVEYSEGEAYAEENG--------------LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGG---RRLVE-TAEAPK  246 (373)
Q Consensus       185 ~v~~~e~~~~~~~~~--------------~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~---~~~~~-~~~~~~  246 (373)
                      .++.++++++|++.+              ++|+|+||++|.||+++|..+++.+.........+.   +-.+. ..+..+
T Consensus       136 ~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (220)
T cd04126         136 QVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPKRS  215 (220)
T ss_pred             cCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCcccC
Confidence            899999999999876              689999999999999999999988765433222211   11222 345667


Q ss_pred             CCCCC
Q psy18160        247 TSNCC  251 (373)
Q Consensus       247 ~~~cc  251 (373)
                      +++||
T Consensus       216 ~~~~~  220 (220)
T cd04126         216 KSKCC  220 (220)
T ss_pred             CCCCC
Confidence            78888

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04122 Rab14 Rab14 subfamily

Probab=99.97  E-value=1.1e-29  Score=220.07  Aligned_cols=156  Identities=40%  Similarity=0.693  Sum_probs=142.6

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++|++++|...   |++.++..+.+.+++..+.+.+|||+|+++|..++..+++++|++++||
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   82 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   82 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence            68899997   99999999999998776   8888888888899999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |+++++||+.+..|+..+..                     ...++.|+++||||+|+... +.++.+++.++++..+++
T Consensus        83 d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~iiiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~  140 (166)
T cd04122          83 DITRRSTYNHLSSWLTDARN---------------------LTNPNTVIFLIGNKADLEAQ-RDVTYEEAKQFADENGLL  140 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEECcccccc-cCcCHHHHHHHHHHcCCE
Confidence            99999999999999988866                     33467899999999999765 668888999999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++++||++|.||+++|.++++.+.
T Consensus       141 ~~e~Sa~~~~~i~e~f~~l~~~~~  164 (166)
T cd04122         141 FLECSAKTGENVEDAFLETAKKIY  164 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999998775

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04125 RabA_like RabA-like subfamily

Probab=99.97  E-value=1.7e-29  Score=223.51  Aligned_cols=181  Identities=28%  Similarity=0.509  Sum_probs=154.1

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++|.++.|...   |+|.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            47899998   99999999999999863   8888888888999999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++.+|+.+..|+..+..                     .....+|+++||||+|+.+. +.++.+++..+++..+++
T Consensus        81 d~~~~~s~~~i~~~~~~i~~---------------------~~~~~~~~ivv~nK~Dl~~~-~~v~~~~~~~~~~~~~~~  138 (188)
T cd04125          81 DVTDQESFENLKFWINEINR---------------------YARENVIKVIVANKSDLVNN-KVVDSNIAKSFCDSLNIP  138 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEECCCCccc-ccCCHHHHHHHHHHcCCe
Confidence            99999999999999998876                     23456899999999999765 667888889999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNT  253 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~  253 (373)
                      ++++||+++.|++++|++|++.+.++.......   ..+.....++++||+.
T Consensus       139 ~~evSa~~~~~i~~~f~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  187 (188)
T cd04125         139 FFETSAKQSINVEEAFILLVKLIIKRLEEQELS---PKNIKQQFKKKNNCFI  187 (188)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhcCcCC---ccccccccccccCccc
Confidence            999999999999999999999987654433222   1233444566777754

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.97  E-value=9.9e-30  Score=231.59  Aligned_cols=161  Identities=24%  Similarity=0.413  Sum_probs=142.1

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|+   |||||+++|+.+.|...   |++.++. +.+.+++..+.++||||+|+++|..+++.++++||++++
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl   90 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL   90 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence            4579999998   99999999999999876   8887774 568889999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccC
Q psy18160        120 VYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVE  187 (373)
Q Consensus       120 v~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~  187 (373)
                      |||+++++||+.+ ..|+.++..                     . .+++|++|||||+||.+.           .+.++
T Consensus        91 VyDit~~~Sf~~~~~~w~~~i~~---------------------~-~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs  148 (232)
T cd04174          91 CFDISRPETVDSALKKWKAEIMD---------------------Y-CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPIS  148 (232)
T ss_pred             EEECCChHHHHHHHHHHHHHHHH---------------------h-CCCCCEEEEEECcccccccchhhhhccccCCcCC
Confidence            9999999999985 789998876                     1 257899999999999642           25689


Q ss_pred             HHHHHHHHHHcCC-eEEEEcCCCCC-CHHHHHHHHHHHcchhhc
Q psy18160        188 YSEGEAYAEENGL-LFMETSAKTAM-NVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       188 ~~e~~~~~~~~~~-~~~evSak~~~-gI~~lf~~L~~~i~~~~~  229 (373)
                      .++++++|+.+++ .|+||||++|. ||+++|..++..+.++..
T Consensus       149 ~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~  192 (232)
T cd04174         149 YEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLS  192 (232)
T ss_pred             HHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence            9999999999998 69999999998 899999999998875433

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04110 Rab35 Rab35 subfamily

Probab=99.97  E-value=2e-29  Score=225.33  Aligned_cols=183  Identities=28%  Similarity=0.534  Sum_probs=153.7

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|+   |||||+++|++..|...   |++.++..+.+.+++..+.+.|||++|+++|..++..+++++|++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            4689999998   99999999999988754   88888888888889989999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||+++++||+.+..|+..+..                      ..+.+|++|||||+|+.+. +.+..+++.++++..+
T Consensus        85 v~D~~~~~s~~~~~~~~~~i~~----------------------~~~~~piivVgNK~Dl~~~-~~~~~~~~~~~~~~~~  141 (199)
T cd04110          85 VYDVTNGESFVNVKRWLQEIEQ----------------------NCDDVCKVLVGNKNDDPER-KVVETEDAYKFAGQMG  141 (199)
T ss_pred             EEECCCHHHHHHHHHHHHHHHH----------------------hCCCCCEEEEEECcccccc-cccCHHHHHHHHHHcC
Confidence            9999999999999999998866                      2357899999999999764 5677888999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcchhhccCCC-----CCCcccc-ccCCCCCCCCC
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQ-----GGRRLVE-TAEAPKTSNCC  251 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~-----~~~~~~~-~~~~~~~~~cc  251 (373)
                      .+++++||++|.||+++|++|++.+.........     ....... ....+++++||
T Consensus       142 ~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (199)
T cd04110         142 ISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC  199 (199)
T ss_pred             CEEEEEECCCCcCHHHHHHHHHHHHHHhhhccCcccccCCccccCccchhccccccCC
Confidence            9999999999999999999999988764332221     1111112 33457778888

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04112 Rab26 Rab26 subfamily

Probab=99.97  E-value=1.8e-29  Score=224.23  Aligned_cols=182  Identities=36%  Similarity=0.654  Sum_probs=153.6

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ++++++|.   |||||+++|.+++|...    |++.++..+.+.+++..+.++||||+|++++..++..+++++|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            37889997   99999999999998642    888888777888999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++++|+++..|+..+..                     ....++|+++||||+|+... +.+..+++..+++.++.
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piiiv~NK~Dl~~~-~~~~~~~~~~l~~~~~~  138 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKE---------------------YAQEDVVIMLLGNKADMSGE-RVVKREDGERLAKEYGV  138 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHH---------------------hCCCCCcEEEEEEcccchhc-cccCHHHHHHHHHHcCC
Confidence            999999999999999988877                     33457899999999999754 66778889999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCcccc--ccCCCCCCCCC
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVE--TAEAPKTSNCC  251 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~cc  251 (373)
                      +|+++||++|.|++++|++|++.+.......+....-..+  .+..++.++||
T Consensus       139 ~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (191)
T cd04112         139 PFMETSAKTGLNVELAFTAVAKELKHRKYEQPDEGKFKISDYVTKQKKISRCC  191 (191)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHHhccccCCCCcEEeccccCcccccCCCC
Confidence            9999999999999999999999987664432222221121  35667788888

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0081|consensus

Probab=99.97  E-value=1.8e-31  Score=219.50  Aligned_cols=163  Identities=28%  Similarity=0.443  Sum_probs=149.3

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC---------CEEEEEEEEeCCCcccccccchhhc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD---------DVTIRFEIWDTAGQERYHTLAPMYY  111 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~---------~~~v~l~i~Dt~G~e~~~~l~~~~~  111 (373)
                      .|+.+++|+   ||||++.+|..++|...   |+|+||..|.+.++         +.++.+++|||+|||+|+++...++
T Consensus         9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf   88 (219)
T KOG0081|consen    9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF   88 (219)
T ss_pred             HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence            367788898   99999999999999988   99999999999884         3678999999999999999999999


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160        112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG  191 (373)
Q Consensus       112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~  191 (373)
                      ++|-+++++||+++..||-++..|+.+++.+                    ...+++-|+++|||+||.+. |.|+.+++
T Consensus        89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~h--------------------AYcE~PDivlcGNK~DL~~~-R~Vs~~qa  147 (219)
T KOG0081|consen   89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTH--------------------AYCENPDIVLCGNKADLEDQ-RVVSEDQA  147 (219)
T ss_pred             HhhccceEEEeccchHHHHHHHHHHHHHHHh--------------------hccCCCCEEEEcCccchhhh-hhhhHHHH
Confidence            9999999999999999999999999999874                    34567789999999999887 89999999


Q ss_pred             HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhcc
Q psy18160        192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN  230 (373)
Q Consensus       192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~  230 (373)
                      .++|+++|+||||+||.+|.||++..+.|+..+.++.++
T Consensus       148 ~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie~  186 (219)
T KOG0081|consen  148 AALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIEQ  186 (219)
T ss_pred             HHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888876553

>PLN03110 Rab GTPase; Provisional

Probab=99.97  E-value=5.8e-29  Score=225.25  Aligned_cols=160  Identities=38%  Similarity=0.587  Sum_probs=145.2

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|.   |||||+++|.+..+...   |+|.++..+.+.+++..+.++||||+|+++|..++..++++++++++
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il   90 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   90 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence            4578999998   99999999999988755   99999999999999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++++.+|+.+..|+..+..                     ....++|+++||||+|+... +.++.+++..++..++
T Consensus        91 v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~piiiv~nK~Dl~~~-~~~~~~~~~~l~~~~~  148 (216)
T PLN03110         91 VYDITKRQTFDNVQRWLRELRD---------------------HADSNIVIMMAGNKSDLNHL-RSVAEEDGQALAEKEG  148 (216)
T ss_pred             EEECCChHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEEChhcccc-cCCCHHHHHHHHHHcC
Confidence            9999999999999999998876                     33457999999999999765 6688888999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      ++++++||++|.|++++|+.|++.+.+.
T Consensus       149 ~~~~e~SA~~g~~v~~lf~~l~~~i~~~  176 (216)
T PLN03110        149 LSFLETSALEATNVEKAFQTILLEIYHI  176 (216)
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888653

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.97  E-value=2.4e-29  Score=219.68  Aligned_cols=160  Identities=28%  Similarity=0.435  Sum_probs=141.6

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|+   |||||+++|..++|...   |++..+ .+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            68999998   99999999999999765   777555 466888999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++.||+.+..|+..+.+.                    ...+++|++|||||+|+.+. +.++.++++++++.++++
T Consensus        82 d~~~~~Sf~~~~~~~~~i~~~--------------------~~~~~~piilvgNK~Dl~~~-~~v~~~~~~~~a~~~~~~  140 (172)
T cd04141          82 SVTDRHSFQEASEFKKLITRV--------------------RLTEDIPLVLVGNKVDLESQ-RQVTTEEGRNLAREFNCP  140 (172)
T ss_pred             ECCchhHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEEChhhhhc-CccCHHHHHHHHHHhCCE
Confidence            999999999999998877662                    12357999999999999765 678899999999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      |+++||++|.||+++|++|++.+.++..
T Consensus       141 ~~e~Sa~~~~~v~~~f~~l~~~~~~~~~  168 (172)
T cd04141         141 FFETSAALRHYIDDAFHGLVREIRRKES  168 (172)
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999988875433

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04144 Ras2 Ras2 subfamily

Probab=99.97  E-value=3.4e-29  Score=222.22  Aligned_cols=182  Identities=29%  Similarity=0.428  Sum_probs=146.1

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      +++++|.   |||||+++|+.+.|...   |++..+ .+.+.+++..+.+++|||+|+++|..++..+++++|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            4788887   99999999999988765   666554 4567788889999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeE
Q psy18160        123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF  202 (373)
Q Consensus       123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~  202 (373)
                      ++++.||+.+..|+..+.....                  ....++|++|||||+|+... +.++.+++.++++.++++|
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~------------------~~~~~~piilvgNK~Dl~~~-~~v~~~~~~~~~~~~~~~~  140 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKD------------------ESAADVPIMIVGNKCDKVYE-REVSTEEGAALARRLGCEF  140 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhc------------------ccCCCCCEEEEEEChhcccc-CccCHHHHHHHHHHhCCEE
Confidence            9999999999999988876210                  11357899999999999765 6678888889999999999


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCC
Q psy18160        203 METSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCC  251 (373)
Q Consensus       203 ~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc  251 (373)
                      +++||++|.||+++|+++++.+.++.... .++.........+++.+||
T Consensus       141 ~e~SAk~~~~v~~l~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~  188 (190)
T cd04144         141 IEASAKTNVNVERAFYTLVRALRQQRQGG-QGPKGGPTKKKEKKKRKCV  188 (190)
T ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhccc-CCCcCCCCCcccccccCce
Confidence            99999999999999999998876544332 2222222233444455555

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04117 Rab15 Rab15 subfamily

Probab=99.97  E-value=5.6e-29  Score=214.86  Aligned_cols=153  Identities=34%  Similarity=0.586  Sum_probs=139.7

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      +++++|.   |||||+++|.++.|.+.   |++.++..+.+.+++..+.+++||++|+++|..++..+++++|++++|||
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYD   81 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEE
Confidence            6888887   99999999999999775   88888888889999989999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeE
Q psy18160        123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF  202 (373)
Q Consensus       123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~  202 (373)
                      +++++||+.+..|+..+..                     ....++|+++||||.|+.+. +.+..+++..+++.++.+|
T Consensus        82 ~~~~~sf~~~~~~~~~~~~---------------------~~~~~~~iilvgnK~Dl~~~-~~v~~~~~~~~~~~~~~~~  139 (161)
T cd04117          82 ISSERSYQHIMKWVSDVDE---------------------YAPEGVQKILIGNKADEEQK-RQVGDEQGNKLAKEYGMDF  139 (161)
T ss_pred             CCCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEECcccccc-cCCCHHHHHHHHHHcCCEE
Confidence            9999999999999988876                     23357899999999999765 6788899999999999999


Q ss_pred             EEEcCCCCCCHHHHHHHHHHH
Q psy18160        203 METSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       203 ~evSak~~~gI~~lf~~L~~~  223 (373)
                      +|+||++|.||+++|.+|++.
T Consensus       140 ~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         140 FETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             EEEeCCCCCCHHHHHHHHHhh
Confidence            999999999999999999865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=8e-29  Score=213.29  Aligned_cols=155  Identities=35%  Similarity=0.634  Sum_probs=144.4

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      |++++|+   |||||+++|.++.|...   |+|.++..+.+.+++..+.+++||++|+++|..++..+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6899998   99999999999998877   88899999999999999999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeE
Q psy18160        123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF  202 (373)
Q Consensus       123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~  202 (373)
                      +++++||+.+..|+..+..                     ....++|++|||||+|+.+. +.++.++++++++.++.+|
T Consensus        81 ~~~~~S~~~~~~~~~~i~~---------------------~~~~~~~iivvg~K~D~~~~-~~v~~~~~~~~~~~~~~~~  138 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQK---------------------YKPEDIPIIVVGNKSDLSDE-REVSVEEAQEFAKELGVPY  138 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHH---------------------HSTTTSEEEEEEETTTGGGG-SSSCHHHHHHHHHHTTSEE
T ss_pred             ccccccccccccccccccc---------------------cccccccceeeecccccccc-ccchhhHHHHHHHHhCCEE
Confidence            9999999999999999987                     23357999999999999774 7899999999999999999


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        203 METSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       203 ~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +|+||+++.||.++|..+++.+.
T Consensus       139 ~e~Sa~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  139 FEVSAKNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             EEEBTTTTTTHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04128 Spg1 Spg1p

Probab=99.96  E-value=8.5e-29  Score=218.27  Aligned_cols=157  Identities=22%  Similarity=0.358  Sum_probs=136.6

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|+   |||||++||+++.|...   |+|.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            47899998   99999999999999775   9999998889999999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC----CcccCHHHHHHHHHH
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS----RRCVEYSEGEAYAEE  197 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~----~~~v~~~e~~~~~~~  197 (373)
                      |++++.||+++.+|+..+..                     .....+| ++||||+|+...    .+....++++++++.
T Consensus        81 D~t~~~s~~~i~~~~~~~~~---------------------~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~  138 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARG---------------------FNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKA  138 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHH---------------------hCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHH
Confidence            99999999999999998876                     2234567 688999999521    111224677889999


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        198 NGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ++++++++||++|.||+++|+++++.+.+
T Consensus       139 ~~~~~~e~SAk~g~~v~~lf~~l~~~l~~  167 (182)
T cd04128         139 MKAPLIFCSTSHSINVQKIFKIVLAKAFD  167 (182)
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999988864

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01865 Rab3 Rab3 subfamily

Probab=99.96  E-value=1.7e-28  Score=212.46  Aligned_cols=156  Identities=30%  Similarity=0.542  Sum_probs=140.6

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++|.+++|...   |+|.++..+.+..++..+.+++|||+|++++..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            58899998   99999999999998765   8888888788888888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++++|+.+.+|+..+..                     ....++|+++||||+|+.+. +.+..+++.++++.++++
T Consensus        82 d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~  139 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKT---------------------YSWDNAQVILVGNKCDMEDE-RVVSSERGRQLADQLGFE  139 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHH---------------------hCCCCCCEEEEEECcccCcc-cccCHHHHHHHHHHcCCE
Confidence            99999999999999998866                     33457899999999999765 567788888999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++++||+++.|++++|++|++.+.
T Consensus       140 ~~~~Sa~~~~gv~~l~~~l~~~~~  163 (165)
T cd01865         140 FFEASAKENINVKQVFERLVDIIC  163 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999988765

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.96  E-value=1.8e-28  Score=212.80  Aligned_cols=158  Identities=37%  Similarity=0.663  Sum_probs=143.7

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .++++++|.   |||||+++|.++.|.+.   |++.++..+.+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v   82 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV   82 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence            478999998   99999999999998876   888888888888999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.+|+.+.+|+..+..                     ....++|+++||||+|+.+. +.+..+++.++++.+++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~  140 (167)
T cd01867          83 YDITDEKSFENIRNWMRNIEE---------------------HASEDVERMLVGNKCDMEEK-RVVSKEEGEALADEYGI  140 (167)
T ss_pred             EECcCHHHHHhHHHHHHHHHH---------------------hCCCCCcEEEEEECcccccc-cCCCHHHHHHHHHHcCC
Confidence            999999999999999998876                     33467899999999999865 66788889999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      +++++||++|.||+++|+++++.+.+
T Consensus       141 ~~~~~Sa~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         141 KFLETSAKANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999988753

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.96  E-value=1.7e-28  Score=215.05  Aligned_cols=154  Identities=22%  Similarity=0.387  Sum_probs=134.9

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|+   |||||+++|..+.|...   |++.++ .+.+.+++..+.++||||+|+++|..++..+++++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            68999998   99999999999999655   887766 456788899999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccCHH
Q psy18160        122 DITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVEYS  189 (373)
Q Consensus       122 D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~~~  189 (373)
                      |+++++||+.+. .|+..+..                      ..+++|++|||||+|+.+.           .+.++.+
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~----------------------~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~  138 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITH----------------------HCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE  138 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHH----------------------hCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHH
Confidence            999999999997 58888765                      1257899999999998643           2568889


Q ss_pred             HHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        190 EGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       190 e~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      +++++++..+ +.|+|+||++|.||+++|+.++...
T Consensus       139 ~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         139 TGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             HHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence            9999999887 6899999999999999999998743

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04109 Rab28 Rab28 subfamily

Probab=99.96  E-value=2.7e-28  Score=220.67  Aligned_cols=161  Identities=25%  Similarity=0.400  Sum_probs=142.2

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECC-EEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDD-VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~-~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ++++++|.   |||||+++|+++.|...   |++.+++.+.+.+++ ..+.++||||+|++.+..++..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            47889997   99999999999988766   999999888888865 578999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||+++++||+.+..|+..+.+...                  ....++|+++||||+|+.+. +.+..+++.++++.+++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~------------------~~~~~~piilVgNK~DL~~~-~~v~~~~~~~~~~~~~~  141 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLK------------------SSETQPLVVLVGNKTDLEHN-RTVKDDKHARFAQANGM  141 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcc------------------ccCCCceEEEEEECcccccc-cccCHHHHHHHHHHcCC
Confidence            999999999999999999877211                  11246789999999999755 67888899999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +++++||++|.||+++|++|++.+...
T Consensus       142 ~~~~iSAktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109         142 ESCLVSAKTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999988654

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04127 Rab27A Rab27a subfamily

Probab=99.96  E-value=1.9e-28  Score=214.94  Aligned_cols=160  Identities=29%  Similarity=0.477  Sum_probs=141.7

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC----------CEEEEEEEEeCCCcccccccchh
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD----------DVTIRFEIWDTAGQERYHTLAPM  109 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~----------~~~v~l~i~Dt~G~e~~~~l~~~  109 (373)
                      ..++++++|+   |||||+++|.++.|...   |++.++..+.+.++          +..+.++||||+|+++|..++..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            3489999998   99999999999988876   88888877777664          45789999999999999999999


Q ss_pred             hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160        110 YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS  189 (373)
Q Consensus       110 ~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~  189 (373)
                      +++++|++++|||+++++||.++..|+..+...                    ...+++|++|||||+|+.+. +.++.+
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piiiv~nK~Dl~~~-~~v~~~  141 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTH--------------------AYCENPDIVLCGNKADLEDQ-RQVSEE  141 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCcEEEEEeCccchhc-CccCHH
Confidence            999999999999999999999999999988762                    12357899999999999765 668888


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       190 e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ++.++++..+++++++||++|.|++++|++|++.+.+
T Consensus       142 ~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         142 QAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            8999999999999999999999999999999987753

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04118 Rab24 Rab24 subfamily

Probab=99.96  E-value=5.2e-28  Score=214.82  Aligned_cols=159  Identities=35%  Similarity=0.611  Sum_probs=140.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcC--c--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYP--Y--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~--~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ++++++|.   |||||+++|+++.|..  .  |+|.++..+.+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            37899998   9999999999999875  2  888888888899999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC---CcccCHHHHHHHHHH
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS---RRCVEYSEGEAYAEE  197 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~---~~~v~~~e~~~~~~~  197 (373)
                      ||++++.+|+++..|+..+..                      ..+++|++||+||+|+.+.   .+.+..+++.+++..
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~----------------------~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~  138 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQN----------------------LEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADE  138 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHh----------------------cCCCCCEEEEEEcccccccccccCccCHHHHHHHHHH
Confidence            999999999999999988866                      1247899999999998542   245666788889988


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      .+.+++++||+++.|++++|++|++.+.+..
T Consensus       139 ~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  169 (193)
T cd04118         139 IKAQHFETSSKTGQNVDELFQKVAEDFVSRA  169 (193)
T ss_pred             cCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999999887543

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04111 Rab39 Rab39 subfamily

Probab=99.96  E-value=5.2e-28  Score=218.21  Aligned_cols=161  Identities=30%  Similarity=0.549  Sum_probs=143.9

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEE-CCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCL-DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ++++++|+   |||||+++|+++.|...   |+|.++..+.+.+ ++..+.+++|||+|++++..++..+++++|++++|
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv   82 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLV   82 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEE
Confidence            68999998   99999999999998775   8888998888887 46789999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||+++++||+++.+|+..+...                    .....+|++|||||+|+... +.+..+++.++++.+++
T Consensus        83 ~D~~~~~Sf~~l~~~~~~i~~~--------------------~~~~~~~iilvgNK~Dl~~~-~~v~~~~~~~~~~~~~~  141 (211)
T cd04111          83 FDITNRESFEHVHDWLEEARSH--------------------IQPHRPVFILVGHKCDLESQ-RQVTREEAEKLAKDLGM  141 (211)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCeEEEEEEccccccc-cccCHHHHHHHHHHhCC
Confidence            9999999999999999988762                    12346789999999999765 67888899999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      +|+++||++|.||+++|+.|++.+.+...
T Consensus       142 ~~~e~Sak~g~~v~e~f~~l~~~~~~~~~  170 (211)
T cd04111         142 KYIETSARTGDNVEEAFELLTQEIYERIK  170 (211)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999998876644

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=99.96  E-value=3.4e-28  Score=215.63  Aligned_cols=161  Identities=29%  Similarity=0.448  Sum_probs=141.8

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .++++++|.   |||||+++|+++.|...   |++.++ .+.+.+++..+.+++|||+|+++|..++..+++++|++++|
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv   83 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV   83 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence            479999998   99999999999988755   777666 57788899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++++|+.+..|+..+.+.                    ...+++|+++|+||+|+.+. +.++.+++.++++.++.
T Consensus        84 ~D~s~~~s~~~~~~~~~~i~~~--------------------~~~~~~piiiv~nK~Dl~~~-~~i~~~~~~~~~~~~~~  142 (189)
T PTZ00369         84 YSITSRSSFEEIASFREQILRV--------------------KDKDRVPMILVGNKCDLDSE-RQVSTGEGQELAKSFGI  142 (189)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECcccccc-cccCHHHHHHHHHHhCC
Confidence            9999999999999999888762                    12357899999999998654 66788888899998899


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      +++++||++|.||+++|++|++.+.+...
T Consensus       143 ~~~e~Sak~~~gi~~~~~~l~~~l~~~~~  171 (189)
T PTZ00369        143 PFLETSAKQRVNVDEAFYELVREIRKYLK  171 (189)
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999998875533

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.96  E-value=5.5e-28  Score=209.15  Aligned_cols=156  Identities=39%  Similarity=0.708  Sum_probs=141.7

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++|+++.|...   |++.++..+.+.+++..+.+++||++|++++..++..+++++|++++||
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~   82 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   82 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEE
Confidence            68899997   99999999999988765   8888888888889999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |+++++||.++..|+..+..                     ...++.|+++|+||+|+... +.+..+++..+++.++++
T Consensus        83 d~~~~~s~~~l~~~~~~~~~---------------------~~~~~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~  140 (166)
T cd01869          83 DVTDQESFNNVKQWLQEIDR---------------------YASENVNKLLVGNKCDLTDK-RVVDYSEAQEFADELGIP  140 (166)
T ss_pred             ECcCHHHHHhHHHHHHHHHH---------------------hCCCCCcEEEEEEChhcccc-cCCCHHHHHHHHHHcCCe
Confidence            99999999999999998876                     23357899999999998765 568888999999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++++||++|.||+++|+.|++.+.
T Consensus       141 ~~~~Sa~~~~~v~~~~~~i~~~~~  164 (166)
T cd01869         141 FLETSAKNATNVEQAFMTMAREIK  164 (166)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHH
Confidence            999999999999999999998774

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=5.3e-28  Score=219.38  Aligned_cols=158  Identities=28%  Similarity=0.431  Sum_probs=140.2

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ...++++++|.   |||||+++|+.++|...   |+|.++....+..++..+.+.+|||+|+++|..++..+++++|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            55689999998   99999999999998765   9998988888888888899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||++++.||+.+..|+..+..                     . .+++|++|||||+|+..  +.+..+++ ++++..
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~---------------------~-~~~~piilvgNK~Dl~~--~~v~~~~~-~~~~~~  145 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCR---------------------V-CENIPIVLCGNKVDVKN--RQVKAKQV-TFHRKK  145 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHH---------------------h-CCCCcEEEEEEchhhhh--ccCCHHHH-HHHHhc
Confidence            99999999999999999998876                     1 35789999999999964  44555555 788888


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +++|+++||++|.||+++|++|++.+.+.
T Consensus       146 ~~~~~e~SAk~~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        146 NLQYYEISAKSNYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence            89999999999999999999999988654

>cd04134 Rho3 Rho3 subfamily

Probab=99.96  E-value=6.9e-28  Score=213.67  Aligned_cols=155  Identities=25%  Similarity=0.474  Sum_probs=133.9

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      +++++|+   |||||+++|.++.|...   |++..+ .+.+.+++..+.++||||+|+++|..+++.+++++|++++|||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            7889997   99999999999998765   777665 4567788888999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------cccCHHH
Q psy18160        123 ITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RCVEYSE  190 (373)
Q Consensus       123 ~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------~~v~~~e  190 (373)
                      +++++||+.+. .|+..+..                      ..+++|++|||||+|+.+..           +.+..++
T Consensus        81 v~~~~sf~~~~~~~~~~i~~----------------------~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~  138 (189)
T cd04134          81 VDSPDSLENVESKWLGEIRE----------------------HCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEE  138 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHH----------------------hCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHH
Confidence            99999999997 58888765                      12578999999999996541           1356778


Q ss_pred             HHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        191 GEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       191 ~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      +.++++..+ ++|+|+||++|.||+++|++|++.+..
T Consensus       139 ~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         139 GLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALN  175 (189)
T ss_pred             HHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence            888888877 789999999999999999999988863

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04136 Rap_like Rap-like subfamily

Probab=99.96  E-value=7.1e-28  Score=207.31  Aligned_cols=155  Identities=29%  Similarity=0.487  Sum_probs=136.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++|+.+.|...   |++ +.+.+.+.+++..+.+++|||+|+++|..+++.+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            58899997   99999999999988765   665 445677888999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++.+|+.+..|+..+...                    ....++|++||+||+|+.+. +.+..+++.++++.++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~  139 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRV--------------------KDTENVPMVLVGNKCDLEDE-RVVSREEGQALARQWGCP  139 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECcccccc-ceecHHHHHHHHHHcCCe
Confidence            999999999999999888762                    22357899999999999764 567778888899888899


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      ++++||++|.|++++|++|++.+
T Consensus       140 ~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         140 FYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             EEEecCCCCCCHHHHHHHHHHhc
Confidence            99999999999999999998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.96  E-value=1.1e-27  Score=217.06  Aligned_cols=157  Identities=22%  Similarity=0.386  Sum_probs=136.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|+   |||||+++|+.+.|...   |++.++. +.+.+++..+.|.||||+|+++|..+++.+|+++|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            68999998   99999999999998866   8887764 67889999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccCHH
Q psy18160        122 DITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVEYS  189 (373)
Q Consensus       122 D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~~~  189 (373)
                      |+++++||+.+. .|..++..                      ..+++|++|||||+|+..+           ...++.+
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~----------------------~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e  138 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQE----------------------FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHE  138 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh----------------------hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHH
Confidence            999999999995 67766544                      3467999999999999642           1237888


Q ss_pred             HHHHHHHHcCC-eEEEEcCCCCCC-HHHHHHHHHHHcchh
Q psy18160        190 EGEAYAEENGL-LFMETSAKTAMN-VNEIFVEIAKKLPKK  227 (373)
Q Consensus       190 e~~~~~~~~~~-~~~evSak~~~g-I~~lf~~L~~~i~~~  227 (373)
                      ++..+++..++ +|+|+||+++.+ |+++|..++.....+
T Consensus       139 ~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~  178 (222)
T cd04173         139 QGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGR  178 (222)
T ss_pred             HHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhc
Confidence            99999999995 899999999985 999999988876543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.96  E-value=9.3e-28  Score=207.12  Aligned_cols=161  Identities=27%  Similarity=0.500  Sum_probs=141.6

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++|++++|...   |++.++..+.+.+++..+.+++|||+|++++..++..+++++|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            47899997   99999999999998766   8888988888999999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++.+|+.+..|+.++.+.....                ....++|+++|+||+|+.+. +.+..+++.++++..+++
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~----------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~  143 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPH----------------GNMENIVVVVCANKIDLTKH-RAVSEDEGRLWAESKGFK  143 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhcccc----------------ccCCCceEEEEEEchhcccc-cccCHHHHHHHHHHcCCe
Confidence            9999999999999999987731110                01257899999999999754 567888888899999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++++||++|.|++++|++|++.+.
T Consensus       144 ~~~~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         144 YFETSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.96  E-value=1.2e-27  Score=208.61  Aligned_cols=157  Identities=27%  Similarity=0.463  Sum_probs=137.6

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      +++++|+   |||||++||+++.|...   |++.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            6889997   99999999999999765   99999988889999999999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc-ccCHHHHHHHHHHcCCe
Q psy18160        123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR-CVEYSEGEAYAEENGLL  201 (373)
Q Consensus       123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~-~v~~~e~~~~~~~~~~~  201 (373)
                      ++++++|+.+.+|+..+.+.                    .....+|+++||||+|+.+... .+..+++.++++.++.+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~  141 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKE--------------------NDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAE  141 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHh--------------------cCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCe
Confidence            99999999999999987651                    2234578999999999865412 23466778888888999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      |+++||++|.||+++|+.|++.+.
T Consensus       142 ~~e~Sa~~g~~v~~lf~~l~~~~~  165 (170)
T cd04108         142 YWSVSALSGENVREFFFRVAALTF  165 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999988775

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04175 Rap1 Rap1 subgroup

Probab=99.96  E-value=1.3e-27  Score=206.32  Aligned_cols=156  Identities=29%  Similarity=0.495  Sum_probs=137.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++|+.+.|...   |++..+ .+.+.+++..+.+++|||+|+++|..+++.+++++|++++||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            57899997   99999999999888665   776555 467888999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++.+|+.+.+|+..+...                    ....++|++|||||+|+... +.+..+++.++++.++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~  139 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRV--------------------KDTEDVPMILVGNKCDLEDE-RVVGKEQGQNLARQWGCA  139 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECCcchhc-cEEcHHHHHHHHHHhCCE
Confidence            999999999999999888762                    23467899999999999765 567777888899889999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++++||++|.|++++|.+|++.+.
T Consensus       140 ~~~~Sa~~~~~v~~~~~~l~~~l~  163 (164)
T cd04175         140 FLETSAKAKINVNEIFYDLVRQIN  163 (164)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHhh
Confidence            999999999999999999987664

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.96  E-value=2e-27  Score=208.03  Aligned_cols=153  Identities=26%  Similarity=0.457  Sum_probs=133.3

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+.||..+.|...   |++. .+.+.+.+++..+.++||||+|+++|..+++.+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            68999998   99999999999988765   6654 44567788999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccCHH
Q psy18160        122 DITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVEYS  189 (373)
Q Consensus       122 D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~~~  189 (373)
                      |+++++||+++. .|+..+..                      ..+++|++|||||+|+.+.           .+.++.+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~----------------------~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~  138 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRH----------------------HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYP  138 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHH----------------------hCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHH
Confidence            999999999996 68887765                      1357899999999999643           1358889


Q ss_pred             HHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        190 EGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       190 e~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                      ++.++++.++ ++|+|+||++|.||+++|+.+++.
T Consensus       139 ~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         139 QGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             HHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence            9999999998 499999999999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.96  E-value=1.6e-27  Score=212.27  Aligned_cols=153  Identities=20%  Similarity=0.345  Sum_probs=125.4

Q ss_pred             cEEEEEEcC---ChhHHHH-HhhhCcC-----cCc---ceee-eEEEEE--------EEECCEEEEEEEEeCCCcccccc
Q psy18160         47 CMAQIWLKD---RVDCMTQ-IVINVVF-----YPY---LFSA-AFITQT--------VCLDDVTIRFEIWDTAGQERYHT  105 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~-rl~~~~~-----~~~---Tig~-~~~~~~--------i~~~~~~v~l~i~Dt~G~e~~~~  105 (373)
                      .++++++|+   |||||+. ++.++.|     ...   |++. +.+...        +.+++..+.++||||+|+++  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            368999998   9999995 6665543     222   7752 332222        25789999999999999986  3


Q ss_pred             cchhhccCCcEEEEEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC--
Q psy18160        106 LAPMYYRNAQAAIIVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS--  182 (373)
Q Consensus       106 l~~~~~~~ad~iilv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~--  182 (373)
                      +...+++++|++++|||++++.||+++. .|+..+..                     . .+++|++|||||+||.+.  
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~---------------------~-~~~~piilvgNK~DL~~~~~  137 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRH---------------------F-CPRVPVILVGCKLDLRYADL  137 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHH---------------------h-CCCCCEEEEEEchhcccccc
Confidence            5677899999999999999999999997 59888766                     1 247899999999999641  


Q ss_pred             ----------------CcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        183 ----------------RRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       183 ----------------~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                                      .+.++.++++++|+.++++|+||||++|.||+++|+.+++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         138 DEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             chhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence                            36789999999999999999999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.96  E-value=1.8e-27  Score=210.18  Aligned_cols=160  Identities=28%  Similarity=0.440  Sum_probs=136.6

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC-CEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~-~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ++++++|+   |||||+++|.++.|...   |++.++. ..+..+ +..+.+.+|||+|+++|..+++.+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            47899998   99999999999998766   7776664 345565 7889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC---CcccCHHHHHHHHH
Q psy18160        121 YDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS---RRCVEYSEGEAYAE  196 (373)
Q Consensus       121 ~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~---~~~v~~~e~~~~~~  196 (373)
                      ||+++++||+++. .|+..+..                      ..+++|++|||||+|+...   .+.+..+++.++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~----------------------~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~  137 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNH----------------------FCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK  137 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHH----------------------hCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH
Confidence            9999999999996 58877654                      2357899999999998653   13577888999999


Q ss_pred             HcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhcc
Q psy18160        197 ENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEVN  230 (373)
Q Consensus       197 ~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~~  230 (373)
                      .++. +++++||++|.||+++|+.+++.+......
T Consensus       138 ~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~  172 (187)
T cd04132         138 KQGAFAYLECSAKTMENVEEVFDTAIEEALKKEGK  172 (187)
T ss_pred             HcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhhh
Confidence            9998 999999999999999999999988765443

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.96  E-value=1.3e-27  Score=213.54  Aligned_cols=147  Identities=29%  Similarity=0.466  Sum_probs=131.7

Q ss_pred             ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHH
Q psy18160         56 RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRA  132 (373)
Q Consensus        56 GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i  132 (373)
                      |||||++||+.+.|...   |+|.++..+.+.+++..+.+.||||+|+++|..++..|++++|++|+|||++++.||+.+
T Consensus         7 GKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i   86 (200)
T smart00176        7 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNV   86 (200)
T ss_pred             CHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHH
Confidence            99999999999988764   999999888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCC
Q psy18160        133 KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMN  212 (373)
Q Consensus       133 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~g  212 (373)
                      ..|+.++.+                     . .+++|++|||||+|+..  +.+..++ .++++..++.|+|+||++|.|
T Consensus        87 ~~w~~~i~~---------------------~-~~~~piilvgNK~Dl~~--~~v~~~~-~~~~~~~~~~~~e~SAk~~~~  141 (200)
T smart00176       87 PNWHRDLVR---------------------V-CENIPIVLCGNKVDVKD--RKVKAKS-ITFHRKKNLQYYDISAKSNYN  141 (200)
T ss_pred             HHHHHHHHH---------------------h-CCCCCEEEEEECccccc--ccCCHHH-HHHHHHcCCEEEEEeCCCCCC
Confidence            999999877                     1 25799999999999864  4455544 478888899999999999999


Q ss_pred             HHHHHHHHHHHcchh
Q psy18160        213 VNEIFVEIAKKLPKK  227 (373)
Q Consensus       213 I~~lf~~L~~~i~~~  227 (373)
                      |+++|++|++.+.+.
T Consensus       142 v~~~F~~l~~~i~~~  156 (200)
T smart00176      142 FEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999888643

Ran is involved in the active transport of proteins through nuclear pores.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.96  E-value=1.7e-27  Score=204.88  Aligned_cols=153  Identities=30%  Similarity=0.514  Sum_probs=137.6

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC--CEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD--DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~--~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ++++++|.   |||||+++|+++.|...   |++.++..+.+.++  +..+.+++|||+|+++|..++..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            47899998   99999999999988765   88888877888887  788999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++++++|+.+..|+..+..                      ...++|+++|+||+|+... +.+..+++.++++.++
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~----------------------~~~~~p~iiv~nK~Dl~~~-~~v~~~~~~~~~~~~~  137 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEA----------------------ECGDIPMVLVQTKIDLLDQ-AVITNEEAEALAKRLQ  137 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHH----------------------hCCCCCEEEEEEChhcccc-cCCCHHHHHHHHHHcC
Confidence            9999999999999999988765                      2357899999999999765 5678888999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                      ++++++||+++.|++++|++|+..
T Consensus       138 ~~~~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         138 LPLFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999999998753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04176 Rap2 Rap2 subgroup

Probab=99.96  E-value=2.6e-27  Score=204.16  Aligned_cols=155  Identities=34%  Similarity=0.499  Sum_probs=136.6

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++|+.+.|.+.   |++ ++..+.+.+++..+.++||||+|+++|..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            58899997   99999999999988766   554 566678888999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++.||+++..|+..+.+.                    ....++|++|||||+|+... +.+..+++..+++..+.+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piviv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~  139 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRV--------------------KGYEKVPIILVGNKVDLESE-REVSSAEGRALAEEWGCP  139 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECccchhc-CccCHHHHHHHHHHhCCE
Confidence            999999999999999888762                    12357899999999998654 567777888888888899


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      ++++||+++.|++++|.++++.+
T Consensus       140 ~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         140 FMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             EEEecCCCCCCHHHHHHHHHHhc
Confidence            99999999999999999998765

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04116 Rab9 Rab9 subfamily

Probab=99.96  E-value=3.7e-27  Score=204.75  Aligned_cols=160  Identities=29%  Similarity=0.524  Sum_probs=140.8

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|.   |||||+++|+++.|.+.   |+|.++..+.+.+++..+.++|||++|++++..++..+++++|++++
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   83 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL   83 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence            4589999998   99999999999998875   88888888889999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||+++++||+.+..|+..+......                 ....++|++|||||+|+..  +.+..++++++++.++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~-----------------~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~  144 (170)
T cd04116          84 TFAVDDSQSFQNLSNWKKEFIYYADV-----------------KEPESFPFVVLGNKNDIPE--RQVSTEEAQAWCRENG  144 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhccc-----------------ccCCCCcEEEEEECccccc--cccCHHHHHHHHHHCC
Confidence            99999999999999999887662110                 1235789999999999863  6688889999999888


Q ss_pred             C-eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        200 L-LFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       200 ~-~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      . +++++||++|.|++++|+.+++.+
T Consensus       145 ~~~~~e~Sa~~~~~v~~~~~~~~~~~  170 (170)
T cd04116         145 DYPYFETSAKDATNVAAAFEEAVRRV  170 (170)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            4 899999999999999999998753

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01868 Rab11_like Rab11-like

Probab=99.96  E-value=3.3e-27  Score=203.97  Aligned_cols=156  Identities=40%  Similarity=0.634  Sum_probs=140.6

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .++++++|.   |||||+++|.++.+...   |++.++..+.+.+++..+.+++||++|++++..++..++++++++++|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            368999997   99999999999988765   888888888999999889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.+|+.+.+|+..+..                     ....++|++||+||+|+... +.+..++...+++..++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~pi~vv~nK~Dl~~~-~~~~~~~~~~~~~~~~~  140 (165)
T cd01868          83 YDITKKQTFENVERWLKELRD---------------------HADSNIVIMLVGNKSDLRHL-RAVPTEEAKAFAEKNGL  140 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEECcccccc-ccCCHHHHHHHHHHcCC
Confidence            999999999999999998877                     23346899999999999765 66788888999988899


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      +++++||++|.|++++|++|+..+
T Consensus       141 ~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         141 SFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            999999999999999999998764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04113 Rab4 Rab4 subfamily

Probab=99.95  E-value=3.8e-27  Score=202.72  Aligned_cols=155  Identities=37%  Similarity=0.671  Sum_probs=140.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||++++.++++...   |++.++..+.+.+++..+.+++||++|+++|..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            47899997   99999999999998765   7888888888889998999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++++|..+..|+..+..                     ...+++|++||+||.|+... +.+..+++..+++..+++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~iivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~  138 (161)
T cd04113          81 DITNRTSFEALPTWLSDARA---------------------LASPNIVVILVGNKSDLADQ-REVTFLEASRFAQENGLL  138 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEEchhcchh-ccCCHHHHHHHHHHcCCE
Confidence            99999999999999988766                     34468999999999999764 668888999999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      ++++||+++.|++++|+++++.+
T Consensus       139 ~~~~Sa~~~~~i~~~~~~~~~~~  161 (161)
T cd04113         139 FLETSALTGENVEEAFLKCARSI  161 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            99999999999999999998754

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01866 Rab2 Rab2 subfamily

Probab=99.95  E-value=5.1e-27  Score=203.91  Aligned_cols=157  Identities=41%  Similarity=0.713  Sum_probs=142.1

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..+++++|.   |||||++++++.++...   |+|.++..+.+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            368899997   99999999999988775   888888888889999899999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.||+.+..|+..+..                     ...+++|++||+||.|+... +.+..+++..+++..++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~  141 (168)
T cd01866          84 YDITRRETFNHLTSWLEDARQ---------------------HSNSNMTIMLIGNKCDLESR-REVSYEEGEAFAKEHGL  141 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHH---------------------hCCCCCcEEEEEECcccccc-cCCCHHHHHHHHHHcCC
Confidence            999999999999999998877                     33468999999999999754 56788889999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +++++||+++.||+++|.++++.+.
T Consensus       142 ~~~e~Sa~~~~~i~~~~~~~~~~~~  166 (168)
T cd01866         142 IFMETSAKTASNVEEAFINTAKEIY  166 (168)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999988765

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.95  E-value=3.8e-27  Score=203.04  Aligned_cols=151  Identities=17%  Similarity=0.265  Sum_probs=128.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      ++++++|+   |||||+++|+.+.|...  +.+..+ .+.+.+++..+.+++|||+|++.     ..+++++|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            37899997   99999999999988765  445455 57789999999999999999975     356789999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC-CCcccCHHHHHHHHHHc-CC
Q psy18160        123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT-SRRCVEYSEGEAYAEEN-GL  200 (373)
Q Consensus       123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~-~~~~v~~~e~~~~~~~~-~~  200 (373)
                      ++++.||+++..|+.++...                    ...+++|++|||||.|+.. ..+.++.++++++++.. ++
T Consensus        75 ~~~~~sf~~~~~~~~~i~~~--------------------~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~  134 (158)
T cd04103          75 LENEASFQTVYNLYHQLSSY--------------------RNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRC  134 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCC
Confidence            99999999999999998762                    1236789999999999853 23678888999999876 48


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      +|+||||++|.||+++|..+++.+
T Consensus       135 ~~~e~SAk~~~~i~~~f~~~~~~~  158 (158)
T cd04103         135 SYYETCATYGLNVERVFQEAAQKI  158 (158)
T ss_pred             cEEEEecCCCCCHHHHHHHHHhhC
Confidence            999999999999999999998653

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.95  E-value=5.9e-27  Score=203.36  Aligned_cols=154  Identities=29%  Similarity=0.464  Sum_probs=134.8

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|+   |||||+++|+.+.+...   |++.++....+..++..+.+.+|||+|++++..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            37889998   99999999998887765   8888888777888888999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |+++++||+.+..|+..+.+.                      ..++|+++||||+|+..  +.+.. +..++++..+++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~----------------------~~~~piiiv~nK~Dl~~--~~~~~-~~~~~~~~~~~~  135 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRV----------------------CGNIPIVLCGNKVDIKD--RKVKA-KQITFHRKKNLQ  135 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh----------------------CCCCcEEEEEEchhccc--ccCCH-HHHHHHHHcCCE
Confidence            999999999999999998772                      23799999999999974  33443 455677778899


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ++|+||++|.||+++|++|++.+.+
T Consensus       136 ~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         136 YYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             EEEEeCCCCCChHHHHHHHHHHHHh
Confidence            9999999999999999999988864

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01864 Rab19 Rab19 subfamily

Probab=99.95  E-value=6.2e-27  Score=202.48  Aligned_cols=156  Identities=37%  Similarity=0.633  Sum_probs=139.1

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..+++++|.   |||||++++..+.|...   |.+.++..+.+.+++..+.+.+|||+|++++..++..+++.+|++++|
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv   82 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA   82 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            368888987   99999999999988775   888888888899999889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.+|+.+..|+..+..                     ....++|+++|+||+|+... +.+..+++.++++.++.
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~  140 (165)
T cd01864          83 YDITRRSSFESVPHWIEEVEK---------------------YGASNVVLLLIGNKCDLEEQ-REVLFEEACTLAEKNGM  140 (165)
T ss_pred             EECcCHHHHHhHHHHHHHHHH---------------------hCCCCCcEEEEEECcccccc-cccCHHHHHHHHHHcCC
Confidence            999999999999999998876                     33467899999999999765 56778888999998885


Q ss_pred             -eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        201 -LFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       201 -~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                       .++++||++|.|++++|++|++.+
T Consensus       141 ~~~~e~Sa~~~~~v~~~~~~l~~~l  165 (165)
T cd01864         141 LAVLETSAKESQNVEEAFLLMATEL  165 (165)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHhC
Confidence             689999999999999999998753

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03108 Rab family protein; Provisional

Probab=99.95  E-value=6.5e-27  Score=210.94  Aligned_cols=159  Identities=40%  Similarity=0.697  Sum_probs=144.5

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .++++++|.   |||||+++|++.+|.+.   |++.++..+.+.+++..+.+.+|||+|+++|..++..+++++|++++|
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv   85 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence            478999998   99999999999988765   888899888899999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.+|+.+.+|+..+..                     ...+.+|+++|+||+|+... +.++.++++++++.+++
T Consensus        86 ~D~~~~~s~~~l~~~~~~~~~---------------------~~~~~~piiiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~  143 (210)
T PLN03108         86 YDITRRETFNHLASWLEDARQ---------------------HANANMTIMLIGNKCDLAHR-RAVSTEEGEQFAKEHGL  143 (210)
T ss_pred             EECCcHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECccCccc-cCCCHHHHHHHHHHcCC
Confidence            999999999999999888765                     23457899999999999765 67888999999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +++++||+++.||+++|+++++.+.++
T Consensus       144 ~~~e~Sa~~~~~v~e~f~~l~~~~~~~  170 (210)
T PLN03108        144 IFMEASAKTAQNVEEAFIKTAAKIYKK  170 (210)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999988754

>PLN03118 Rab family protein; Provisional

Probab=99.95  E-value=2.4e-26  Score=207.37  Aligned_cols=162  Identities=35%  Similarity=0.529  Sum_probs=140.4

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..++++++|.   |||||+++|++..+...  |.+.++....+.+++..+.+.||||+|+++|..++..+++++|++++|
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv   92 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV   92 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            3478999997   99999999999888655  888888888888898889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHH-HHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        121 YDITNQDTFGRAKS-WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      ||++++++|+++.. |...+...                    ....+.|++||+||+|+... +.+..++...+++.++
T Consensus        93 ~D~~~~~sf~~~~~~~~~~~~~~--------------------~~~~~~~~ilv~NK~Dl~~~-~~i~~~~~~~~~~~~~  151 (211)
T PLN03118         93 YDVTRRETFTNLSDVWGKEVELY--------------------STNQDCVKMLVGNKVDRESE-RDVSREEGMALAKEHG  151 (211)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECcccccc-CccCHHHHHHHHHHcC
Confidence            99999999999975 65555431                    12346799999999999765 5677888888999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      ++|+++||+++.|++++|++|++.+....
T Consensus       152 ~~~~e~SAk~~~~v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        152 CLFLECSAKTRENVEQCFEELALKIMEVP  180 (211)
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999999999998886543

>cd04124 RabL2 RabL2 subfamily

Probab=99.95  E-value=9.2e-27  Score=200.93  Aligned_cols=153  Identities=28%  Similarity=0.444  Sum_probs=134.0

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++|..++|.+.   |.+.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            47899997   99999999999998876   7777777778888999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++.+|+++..|+..+..                      ..+++|+++|+||+|+...    ..++..++++..+++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~----------------------~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~  134 (161)
T cd04124          81 DVTRKITYKNLSKWYEELRE----------------------YRPEIPCIVVANKIDLDPS----VTQKKFNFAEKHNLP  134 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHH----------------------hCCCCcEEEEEECccCchh----HHHHHHHHHHHcCCe
Confidence            99999999999999998866                      2347899999999998532    234566777788899


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ++++||++|.|++++|+.+++.+.+
T Consensus       135 ~~~~Sa~~~~gv~~l~~~l~~~~~~  159 (161)
T cd04124         135 LYYVSAADGTNVVKLFQDAIKLAVS  159 (161)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999987764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.95  E-value=1e-26  Score=199.36  Aligned_cols=154  Identities=26%  Similarity=0.467  Sum_probs=135.0

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++|+++.|...   |++..+ .+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            58899998   99999999999988765   666544 567788988899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++.+|+++..|+..+.+.                    ....++|++||+||+|+..  +.+..+++.++++..+++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~  138 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRV--------------------KDSDDVPMVLVGNKCDLAA--RTVSSRQGQDLAKSYGIP  138 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECccccc--ceecHHHHHHHHHHhCCe
Confidence            999999999999998888762                    1235789999999999975  456778888899889999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      ++++||++|.|++++|++|++.+
T Consensus       139 ~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         139 YIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.95  E-value=9.7e-27  Score=202.52  Aligned_cols=157  Identities=33%  Similarity=0.541  Sum_probs=140.3

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCccccc-ccchhhccCCcEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH-TLAPMYYRNAQAAII  119 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~-~l~~~~~~~ad~iil  119 (373)
                      .++++++|.   |||||+++|+.+.+...   |++.++..+.+.+++..+.+++|||+|+++|. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            368999998   99999999999988765   88888888889999999999999999999887 578899999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++++++|+.+..|+..+...                    ....++|+++|+||+|+... +.++.+++.++++..+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~  140 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQH--------------------SLPNEVPRILVGNKCDLREQ-IQVPTDLAQRFADAHS  140 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHh--------------------cCCCCCCEEEEEECccchhh-cCCCHHHHHHHHHHcC
Confidence            99999999999999999888762                    22367999999999999765 6688888999999999


Q ss_pred             CeEEEEcCCC---CCCHHHHHHHHHHHc
Q psy18160        200 LLFMETSAKT---AMNVNEIFVEIAKKL  224 (373)
Q Consensus       200 ~~~~evSak~---~~gI~~lf~~L~~~i  224 (373)
                      ++|+|+||++   +.||+++|..|++.+
T Consensus       141 ~~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         141 MPLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             CcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence            9999999999   899999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04140 ARHI_like ARHI subfamily

Probab=99.95  E-value=1.8e-26  Score=199.82  Aligned_cols=155  Identities=25%  Similarity=0.334  Sum_probs=133.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++|+++.|...   |++..+ .+.+..++..+.+++|||+|+++|..++..+++.+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            57899997   99999999999998765   555444 556677888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |+++++||+.+..|+..+....                  ....+++|++|||||+|+... +.+..+++..++...+++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~------------------~~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~~~~~  141 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIK------------------GNNIEKIPIMLVGNKCDESHK-REVSSNEGAACATEWNCA  141 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh------------------cCCCCCCCEEEEEECcccccc-CeecHHHHHHHHHHhCCc
Confidence            9999999999999988776521                  112367999999999999764 567788888899888999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHH
Q psy18160        202 FMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~  222 (373)
                      |+++||++|.||+++|++|+.
T Consensus       142 ~~e~SA~~g~~v~~~f~~l~~  162 (165)
T cd04140         142 FMETSAKTNHNVQELFQELLN  162 (165)
T ss_pred             EEEeecCCCCCHHHHHHHHHh
Confidence            999999999999999999874

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.95  E-value=1.5e-26  Score=199.55  Aligned_cols=155  Identities=28%  Similarity=0.457  Sum_probs=135.8

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      +++++|.   |||||+++|++..+...   |++ +...+.+.+++..+.+++|||+|+++|..++..+++++|++++|||
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            7899997   99999999999988765   555 3445677888889999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeE
Q psy18160        123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF  202 (373)
Q Consensus       123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~  202 (373)
                      ++++++|+.+..|+..+.+.                    ....+.|+++||||+|+... +.+..+++.++++..+.++
T Consensus        81 ~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~pii~v~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~  139 (164)
T smart00173       81 ITDRQSFEEIKKFREQILRV--------------------KDRDDVPIVLVGNKCDLESE-RVVSTEEGKELARQWGCPF  139 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECcccccc-ceEcHHHHHHHHHHcCCEE
Confidence            99999999999998887662                    22347899999999999765 5677788889999999999


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        203 METSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       203 ~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +++||++|.|++++|++|++.+.
T Consensus       140 ~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      140 LETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             EEeecCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.95  E-value=1.5e-26  Score=201.64  Aligned_cols=153  Identities=29%  Similarity=0.486  Sum_probs=132.6

Q ss_pred             EEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160         50 QIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI  123 (373)
Q Consensus        50 ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~  123 (373)
                      ++++|+   |||||+++|.++.|...   |++..+ ...+.+++..+.+++|||+|+++|..++..+++++|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            478887   99999999999998765   665444 46778899999999999999999999999999999999999999


Q ss_pred             CCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccCHHHH
Q psy18160        124 TNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVEYSEG  191 (373)
Q Consensus       124 ~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~~~e~  191 (373)
                      ++++||+++. .|+..+..                      ..+++|++|||||+|+...           .+.++.+++
T Consensus        80 ~~~~s~~~~~~~~~~~i~~----------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~  137 (174)
T smart00174       80 DSPASFENVKEKWYPEVKH----------------------FCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQG  137 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHh----------------------hCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHH
Confidence            9999999986 58888765                      2357899999999999653           133778889


Q ss_pred             HHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        192 EAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       192 ~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      .++++.++. +|+++||+++.||+++|+.+++.+.
T Consensus       138 ~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~  172 (174)
T smart00174      138 EALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL  172 (174)
T ss_pred             HHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence            999999986 9999999999999999999998765

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.95  E-value=3.5e-26  Score=196.93  Aligned_cols=156  Identities=24%  Similarity=0.418  Sum_probs=135.8

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .++++++|.   |||||+++|+++.+...   |.+..+ .+...+++..+.+++|||+|++++..++..+++++|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            368999998   99999999999887655   555443 56677889889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.+|+.+..|+..+.+.                    ....++|++||+||+|+... +.+..+++.++++.+++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~  139 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRV--------------------KDRDEFPMILVGNKADLEHQ-RKVSREEGQELARKLKI  139 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHH--------------------hCCCCCCEEEEeeCcccccc-ceecHHHHHHHHHHcCC
Confidence            9999999999999999888762                    22357899999999999765 55777788899998899


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      +++++||++|.||+++|++|++.+
T Consensus       140 ~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         140 PYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             cEEEeeCCCCCCHHHHHHHHHHhh
Confidence            999999999999999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04142 RRP22 RRP22 subfamily

Probab=99.95  E-value=3.1e-26  Score=204.59  Aligned_cols=164  Identities=19%  Similarity=0.176  Sum_probs=134.1

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc--------chhhccC
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL--------APMYYRN  113 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l--------~~~~~~~  113 (373)
                      ++++++|.   |||||+++|++++|...   |++.+++...+.+++..+.+++|||+|.+++...        ...++++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            47899998   99999999999998765   7776776677888999999999999997655322        2345789


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160        114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA  193 (373)
Q Consensus       114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~  193 (373)
                      +|++|+|||+++++||+.+..|+..+.+..                  .....++|++|||||+|+... +.+..+++.+
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~------------------~~~~~~~piiivgNK~Dl~~~-~~~~~~~~~~  141 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETR------------------PAGNKEPPIVVVGNKRDQQRH-RFAPRHVLSV  141 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------------ccCCCCCCEEEEEECcccccc-ccccHHHHHH
Confidence            999999999999999999999998887621                  012467999999999999765 6677777777


Q ss_pred             HHH-HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhcc
Q psy18160        194 YAE-ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN  230 (373)
Q Consensus       194 ~~~-~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~  230 (373)
                      +++ .++++|+++||++|.||+++|+.+++.+..+...
T Consensus       142 ~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         142 LVRKSWKCGYLECSAKYNWHILLLFKELLISATTRGRS  179 (198)
T ss_pred             HHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence            764 5689999999999999999999999888755443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.95  E-value=4.6e-26  Score=196.04  Aligned_cols=156  Identities=43%  Similarity=0.702  Sum_probs=140.5

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++|.+..+...   |++.++....+.+++..+.+.+||++|++++..++..+++++|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            47899997   99999999999988665   8888888888899998899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++.+++.+..|+..+..                     ...+++|+++|+||+|+... +.+..+++.++++.++++
T Consensus        81 d~~~~~s~~~~~~~l~~~~~---------------------~~~~~~pivvv~nK~D~~~~-~~~~~~~~~~~~~~~~~~  138 (164)
T smart00175       81 DITNRESFENLKNWLKELRE---------------------YADPNVVIMLVGNKSDLEDQ-RQVSREEAEAFAEEHGLP  138 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEEchhcccc-cCCCHHHHHHHHHHcCCe
Confidence            99999999999999998877                     23368999999999998764 567788888999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++++||+++.|++++|+.|++.+.
T Consensus       139 ~~e~Sa~~~~~i~~l~~~i~~~~~  162 (164)
T smart00175      139 FFETSAKTNTNVEEAFEELAREIL  162 (164)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999998775

Rab GTPases are implicated in vesicle trafficking.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.95  E-value=4.5e-26  Score=198.87  Aligned_cols=153  Identities=24%  Similarity=0.409  Sum_probs=132.0

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      ++++++|.   |||||+++|.++.|...  +.+.+++...+.+++..+.+++|||+|+++|..+++.+++++|++++|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            47889997   99999999999888776  33345666778889989999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccCHHH
Q psy18160        123 ITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVEYSE  190 (373)
Q Consensus       123 ~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~~~e  190 (373)
                      +++++||+.+. .|+..+..                      ..+++|+++||||+|+...           .+.+..++
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~----------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~  138 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRK----------------------HNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSR  138 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHh----------------------hCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHH
Confidence            99999999985 68877765                      1246899999999998642           35688889


Q ss_pred             HHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHH
Q psy18160        191 GEAYAEENGL-LFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       191 ~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~  222 (373)
                      +.++++..+. +|+++||++|.||+++|+.++-
T Consensus       139 ~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         139 AKALAEKIGACEYIECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             HHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence            9999999987 8999999999999999998763

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>KOG0395|consensus

Probab=99.94  E-value=2.3e-26  Score=204.27  Aligned_cols=161  Identities=30%  Similarity=0.432  Sum_probs=147.6

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..+++++|.   |||+|+.+|..+.|...   |++ +.+.+.+.+++..+.+.|+||+|+++|..+...+++++|++++|
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            468999997   99999999999999988   777 66789999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      |+++++.||+.+..++..+.+.                    .....+|+++||||+|+... |.|+.+++++++..+++
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~--------------------~~~~~~PivlVGNK~Dl~~~-R~V~~eeg~~la~~~~~  140 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRV--------------------KGRDDVPIILVGNKCDLERE-RQVSEEEGKALARSWGC  140 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh--------------------hCcCCCCEEEEEEcccchhc-cccCHHHHHHHHHhcCC
Confidence            9999999999999999998552                    34466999999999999887 89999999999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      +|+|+||+.+.+|+++|..|++.+.....
T Consensus       141 ~f~E~Sak~~~~v~~~F~~L~r~~~~~~~  169 (196)
T KOG0395|consen  141 AFIETSAKLNYNVDEVFYELVREIRLPRE  169 (196)
T ss_pred             cEEEeeccCCcCHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999998876333

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.94  E-value=8.4e-26  Score=194.49  Aligned_cols=155  Identities=61%  Similarity=0.912  Sum_probs=140.9

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++++++++...   |.+.++..+.+.+++..+.+.+||++|++++..++..+++++|++++||
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   81 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence            68999997   99999999999998873   8888888899999999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++++|+.+..|+..+..                     ...+.+|+++++||+|+... +.++.++..++++.++++
T Consensus        82 d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~iivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~  139 (163)
T cd01860          82 DITSEESFEKAKSWVKELQR---------------------NASPNIIIALVGNKADLESK-RQVSTEEAQEYADENGLL  139 (163)
T ss_pred             ECcCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEECcccccc-CcCCHHHHHHHHHHcCCE
Confidence            99999999999999998877                     33468999999999998754 567888888999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      ++++||++|.|++++|++|++.+
T Consensus       140 ~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         140 FFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.94  E-value=6.5e-26  Score=195.53  Aligned_cols=154  Identities=28%  Similarity=0.465  Sum_probs=134.1

Q ss_pred             EEEEEEcC---ChhHHHHHhhhC--cCcCc---ceeeeEEEEEEEEC-CEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINV--VFYPY---LFSAAFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~--~~~~~---Tig~~~~~~~i~~~-~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ++++++|.   |||||++++..+  .|...   |+|.++..+.+.++ +..+.+.+|||+|++++..++..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            47899998   999999999865  56555   88888887888775 57899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||++++++|+.+..|+..+..                     . ..++|+++|+||+|+.+. +.+...+++.++...
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~---------------------~-~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~  137 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRT---------------------A-SKHMPGVLVGNKMDLADK-AEVTDAQAQAFAQAN  137 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHH---------------------h-CCCCCEEEEEECcccccc-cCCCHHHHHHHHHHc
Confidence            99999999999999999988876                     1 256899999999999665 556777777888888


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      +++++++||+++.|++++|+.|++.+
T Consensus       138 ~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         138 QLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             CCeEEEEeCCCCCChHHHHHHHHHHh
Confidence            89999999999999999999998764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01861 Rab6 Rab6 subfamily

Probab=99.94  E-value=1.1e-25  Score=193.33  Aligned_cols=153  Identities=37%  Similarity=0.658  Sum_probs=137.1

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      +++++|.   |||||++++.+.++...   +.+.++..+.+.+++..+.+++|||+|++++..++..+++++|++++|||
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d   81 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   81 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence            6888887   99999999999988765   78888888889899888999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeE
Q psy18160        123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF  202 (373)
Q Consensus       123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~  202 (373)
                      ++++++|+.+..|+..+..                     ....+.|+++|+||+|+... +.+..++...+++..++++
T Consensus        82 ~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~iilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~  139 (161)
T cd01861          82 ITNRQSFDNTDKWIDDVRD---------------------ERGNDVIIVLVGNKTDLSDK-RQVSTEEGEKKAKELNAMF  139 (161)
T ss_pred             CcCHHHHHHHHHHHHHHHH---------------------hCCCCCEEEEEEEChhcccc-CccCHHHHHHHHHHhCCEE
Confidence            9999999999999998765                     22347999999999999654 5677888888998889999


Q ss_pred             EEEcCCCCCCHHHHHHHHHHH
Q psy18160        203 METSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       203 ~evSak~~~gI~~lf~~L~~~  223 (373)
                      +++||+++.|++++|++|.+.
T Consensus       140 ~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         140 IETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             EEEeCCCCCCHHHHHHHHHHh
Confidence            999999999999999999864

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.94  E-value=6.3e-26  Score=209.10  Aligned_cols=164  Identities=17%  Similarity=0.247  Sum_probs=136.2

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|+   |||||+++|++++|...   |++ ++..+.+.+++..+.++||||+|++.|..++..++.++|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            37889997   99999999999988765   665 666788899999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH-cCC
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-NGL  200 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~-~~~  200 (373)
                      |+++++||+++..|+.++.....            ..........++|++||+||+|+... +.+..+++.+++.. .++
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~------------~~~~~~~~~~~~piIivgNK~Dl~~~-~~v~~~ei~~~~~~~~~~  146 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKS------------CLKNKTKENVKIPMVICGNKADRDFP-REVQRDEVEQLVGGDENC  146 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhc------------ccccccccCCCCcEEEEEECccchhc-cccCHHHHHHHHHhcCCC
Confidence            99999999999999998876210            00000012357899999999999764 56788888887764 467


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      .++++||++|.||+++|++|+....
T Consensus       147 ~~~evSAktg~gI~elf~~L~~~~~  171 (247)
T cd04143         147 AYFEVSAKKNSNLDEMFRALFSLAK  171 (247)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHhc
Confidence            8999999999999999999998664

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01892 Miro2 Miro2 subfamily

Probab=99.94  E-value=9.7e-26  Score=196.32  Aligned_cols=156  Identities=16%  Similarity=0.155  Sum_probs=134.4

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCc-Cc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFY-PY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~-~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      +.++++++|+   |||||++||+++.|. ..   |++.++..+.+.+++..+.+.+||++|++++..++..+++++|+++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            4578899997   999999999999997 43   8888888788889998899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||++++.+|+.+..|+..+..                       ..++|+++|+||+|+.+. +.+..++..++++.+
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~-----------------------~~~~p~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~  138 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFM-----------------------LGEIPCLFVAAKADLDEQ-QQRYEVQPDEFCRKL  138 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhcc-----------------------CCCCeEEEEEEccccccc-ccccccCHHHHHHHc
Confidence            99999999999999888876532                       247899999999999654 334445567788888


Q ss_pred             CC-eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        199 GL-LFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       199 ~~-~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++ .++++||+++.|++++|+.|++.+.
T Consensus       139 ~~~~~~~~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         139 GLPPPLHFSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             CCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence            87 4799999999999999999998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01863 Rab18 Rab18 subfamily

Probab=99.94  E-value=4e-25  Score=189.99  Aligned_cols=154  Identities=37%  Similarity=0.617  Sum_probs=137.3

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++|++..+...   |++.++....+.+++..+.+.+|||+|++++..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            47889997   99999999999988664   8888888788888888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++.+|+.+..|+..+...                    ....++|+++|+||+|+..  +.+..++..++++..+++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~~~~iv~nK~D~~~--~~~~~~~~~~~~~~~~~~  138 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETY--------------------STNNDIVKMLVGNKIDKEN--REVTREEGLKFARKHNML  138 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHh--------------------CCCCCCcEEEEEECCcccc--cccCHHHHHHHHHHcCCE
Confidence            999999999999999988762                    2346899999999999974  456778888999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHH
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~  223 (373)
                      ++++||++|.|++++|+++++.
T Consensus       139 ~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         139 FIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             EEEEecCCCCCHHHHHHHHHHh
Confidence            9999999999999999998865

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04135 Tc10 TC10 subfamily

Probab=99.94  E-value=4e-25  Score=192.59  Aligned_cols=154  Identities=26%  Similarity=0.424  Sum_probs=132.2

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++|.++.|...   |++ +.....+.+++..+.+.+|||+|+++|..++..+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            37899997   99999999999998765   554 344557788998999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------cccCHH
Q psy18160        122 DITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RCVEYS  189 (373)
Q Consensus       122 D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------~~v~~~  189 (373)
                      |++++.+|+.+. .|+..+..                     . .++.|+++||||+|+.+..           +.++.+
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~---------------------~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~  137 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKE---------------------Y-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVE  137 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh---------------------h-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHH
Confidence            999999999986 67777655                     2 4678999999999986431           357788


Q ss_pred             HHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        190 EGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       190 e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      ++..+++..+. +|+++||++|.||+++|+.++..+
T Consensus       138 ~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         138 QGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             HHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence            89999999986 799999999999999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04177 RSR1 RSR1 subgroup

Probab=99.94  E-value=4.2e-25  Score=191.73  Aligned_cols=156  Identities=26%  Similarity=0.467  Sum_probs=136.8

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++|.++.|...   |++..+ .+.+.+++..+.+++|||+|+++|..+++.++++++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            57899997   99999999999988765   666444 577888999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC-C
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG-L  200 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~-~  200 (373)
                      |++++++|+.+..|...+.+.                    ....+.|+++++||.|+... +.+..+++.++++..+ +
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~  139 (168)
T cd04177          81 SVTSEASLNELGELREQVLRI--------------------KDSDNVPMVLVGNKADLEDD-RQVSREDGVSLSQQWGNV  139 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--------------------hCCCCCCEEEEEEChhcccc-CccCHHHHHHHHHHcCCc
Confidence            999999999999998888762                    22357899999999999765 6677788888888888 8


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +++++||+++.||+++|+++++++.
T Consensus       140 ~~~~~SA~~~~~i~~~f~~i~~~~~  164 (168)
T cd04177         140 PFYETSARKRTNVDEVFIDLVRQII  164 (168)
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999998764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.94  E-value=2.1e-25  Score=192.93  Aligned_cols=156  Identities=27%  Similarity=0.367  Sum_probs=130.8

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCccc-ccccchhhccCCcEEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQER-YHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~-~~~l~~~~~~~ad~iilv~  121 (373)
                      +++++|.   |||||+++++.+.|...   |.+..+ .+.+.+++..+.+++|||+|+++ +......+++.+|++++||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            4788887   99999999999887654   444344 56678899999999999999986 3456778899999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++.||+.+..|+..+....                   ....++|+++||||+|+... +.++.+++.++++..+.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~~~~~  139 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIK-------------------KRDREIPVILVGNKADLLHY-RQVSTEEGEKLASELGCL  139 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh-------------------cCCCCCCEEEEEECCchHHh-CccCHHHHHHHHHHcCCE
Confidence            9999999999999988887621                   01357899999999998655 668888899999999999


Q ss_pred             EEEEcCCCC-CCHHHHHHHHHHHcc
Q psy18160        202 FMETSAKTA-MNVNEIFVEIAKKLP  225 (373)
Q Consensus       202 ~~evSak~~-~gI~~lf~~L~~~i~  225 (373)
                      |+++||+++ .||+++|+.|++.+.
T Consensus       140 ~~e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         140 FFEVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             EEEeCCCCCchhHHHHHHHHHHHHh
Confidence            999999999 499999999998654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04123 Rab21 Rab21 subfamily

Probab=99.94  E-value=6.6e-25  Score=188.12  Aligned_cols=155  Identities=41%  Similarity=0.698  Sum_probs=136.5

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++|++..+.+.   |.+.++..+.+.+.+..+.+.+||++|++++..+++.+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            37889997   99999999999988765   6666776777888888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++++++.+..|+.++..                     ....++|+++|+||+|+... +.+..++..++++..+.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~  138 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQ---------------------MRGNNISLVIVGNKIDLERQ-RVVSKSEAEEYAKSVGAK  138 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEECcccccc-cCCCHHHHHHHHHHcCCE
Confidence            99999999999999988876                     23347899999999999754 567778888889889999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      ++++||+++.|++++|++|++.+
T Consensus       139 ~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         139 HFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04148 RGK RGK subfamily

Probab=99.93  E-value=4.1e-25  Score=200.70  Aligned_cols=157  Identities=25%  Similarity=0.266  Sum_probs=134.3

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCc-Cc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhcc-CCcEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFY-PY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYR-NAQAAII  119 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~-~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~-~ad~iil  119 (373)
                      ++++++|+   |||||+++|+.+.|. ..   |.+.++..+.+.+++..+.+.+|||+|++  ..+...+++ ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            37889997   999999999988885 33   55557888889999999999999999998  334456677 9999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++++.||+.+..|+..+...                    ....++|++||+||+|+... +.++.+++.+++...+
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~--------------------~~~~~~piilV~NK~Dl~~~-~~v~~~~~~~~a~~~~  137 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRN--------------------RQLEDRPIILVGNKSDLARS-REVSVQEGRACAVVFD  137 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEEChhcccc-ceecHHHHHHHHHHcC
Confidence            99999999999999999888762                    12357999999999999765 6788888889999889


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      ++|+++||+++.||+++|++|++.+...
T Consensus       138 ~~~~e~SA~~~~gv~~l~~~l~~~~~~~  165 (221)
T cd04148         138 CKFIETSAGLQHNVDELLEGIVRQIRLR  165 (221)
T ss_pred             CeEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999988643

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01862 Rab7 Rab7 subfamily

Probab=99.93  E-value=8e-25  Score=189.93  Aligned_cols=162  Identities=35%  Similarity=0.592  Sum_probs=139.7

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||++++.+..+...   |++.++..+.+.+++..+.+++||++|++.+..++..+++++|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            37889997   99999999999988766   8888888888999999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC-C
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG-L  200 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~-~  200 (373)
                      |++++.+|+++..|...+.....                 .....++|+++|+||+|+... +.+..++...+.+..+ .
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~  142 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQAS-----------------PSDPENFPFVVLGNKIDLEEK-RQVSTKKAQQWCQSNGNI  142 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC-----------------ccCCCCceEEEEEECcccccc-cccCHHHHHHHHHHcCCc
Confidence            99999999999999887655211                 012347999999999999753 5567778888888887 7


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +++++||++|.|++++|+++++.+.++
T Consensus       143 ~~~~~Sa~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         143 PYFETSAKEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999887654

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>KOG4252|consensus

Probab=99.93  E-value=1.8e-27  Score=199.71  Aligned_cols=164  Identities=24%  Similarity=0.391  Sum_probs=152.0

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      -+..++.+++|+   ||||+++||+.+-|...   |||++|..+.++++++.+++.+|||+||++|..+...||++|.+.
T Consensus        17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~   96 (246)
T KOG4252|consen   17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS   96 (246)
T ss_pred             hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence            345588888887   99999999999999887   999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160        118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE  197 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~  197 (373)
                      ++||+-+|+.||+.+.+|++++..                      ....+|.++|-||+||.++ .+++.++++.+++.
T Consensus        97 vLVFSTTDr~SFea~~~w~~kv~~----------------------e~~~IPtV~vqNKIDlved-s~~~~~evE~lak~  153 (246)
T KOG4252|consen   97 VLVFSTTDRYSFEATLEWYNKVQK----------------------ETERIPTVFVQNKIDLVED-SQMDKGEVEGLAKK  153 (246)
T ss_pred             EEEEecccHHHHHHHHHHHHHHHH----------------------HhccCCeEEeeccchhhHh-hhcchHHHHHHHHH
Confidence            999999999999999999999987                      4578999999999999887 78999999999999


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHHHcchhhcc
Q psy18160        198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN  230 (373)
Q Consensus       198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~  230 (373)
                      ++..++.+|++...||..+|..|++.+.++...
T Consensus       154 l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  154 LHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998876543

>cd04129 Rho2 Rho2 subfamily

Probab=99.93  E-value=2.4e-24  Score=190.64  Aligned_cols=156  Identities=26%  Similarity=0.454  Sum_probs=132.2

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .+++++|.   |||||+++|..+.|...   |++..+ ...+.+++..+.+.+||++|++++......+++++|+++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            47899997   99999999998888665   555554 456778888899999999999999888888899999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC---------CcccCHHHH
Q psy18160        122 DITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS---------RRCVEYSEG  191 (373)
Q Consensus       122 D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~---------~~~v~~~e~  191 (373)
                      |++++++|+.+. .|+..+..                      ..+++|++|||||+|+.+.         .+.+..+++
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~----------------------~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~  138 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRR----------------------YCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQG  138 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHH----------------------hCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHH
Confidence            999999999997 68888865                      1246999999999998542         245667888


Q ss_pred             HHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        192 EAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       192 ~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ..+++..+. +||++||++|.||+++|+++++.+..
T Consensus       139 ~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  174 (187)
T cd04129         139 KRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALL  174 (187)
T ss_pred             HHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence            999999985 89999999999999999999987764

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0393|consensus

Probab=99.93  E-value=2.2e-25  Score=194.41  Aligned_cols=158  Identities=27%  Similarity=0.479  Sum_probs=140.2

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC-CEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~-~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ..+++|++|+   |||+|+..|..+.|...   |+- |-+...+.++ |+.+.+.+|||+|||+|..+++..|.++|.|+
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            4589999998   99999999999999988   665 4456788895 99999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------Cccc
Q psy18160        119 IVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCV  186 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v  186 (373)
                      +||++.++.||+++. +|+.++..                      ..+++|+||||+|.||.++           ...+
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~----------------------~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~V  139 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKH----------------------HCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPV  139 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHh----------------------hCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcc
Confidence            999999999999986 78888876                      4589999999999999743           1358


Q ss_pred             CHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        187 EYSEGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       187 ~~~e~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      +.++++++|++.| ..|+|+||++..|+.++|+..+.....
T Consensus       140 t~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~  180 (198)
T KOG0393|consen  140 TYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALR  180 (198)
T ss_pred             cHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence            8899999999999 689999999999999999998887764

>cd04114 Rab30 Rab30 subfamily

Probab=99.93  E-value=5.1e-24  Score=184.58  Aligned_cols=157  Identities=31%  Similarity=0.610  Sum_probs=136.9

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ...+++++|.   |||||+++++.+.+.+.   |++.++..+.+.+++..+.+.+||++|++++...+..+++.+|++++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   85 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL   85 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            4478888887   99999999998887665   88888888888999999999999999999999998999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++++.+|+.+..|+..+..                     ....++|+++|+||+|+.+. +.+..+....+.+...
T Consensus        86 v~d~~~~~s~~~~~~~~~~l~~---------------------~~~~~~~~i~v~NK~D~~~~-~~i~~~~~~~~~~~~~  143 (169)
T cd04114          86 TYDITCEESFRCLPEWLREIEQ---------------------YANNKVITILVGNKIDLAER-REVSQQRAEEFSDAQD  143 (169)
T ss_pred             EEECcCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEECcccccc-cccCHHHHHHHHHHcC
Confidence            9999999999999999888766                     23357899999999999765 5566666777887777


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      .+++++||++|.|++++|++|++.+
T Consensus       144 ~~~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         144 MYYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             CeEEEeeCCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999998754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.93  E-value=3.5e-25  Score=222.49  Aligned_cols=214  Identities=19%  Similarity=0.122  Sum_probs=147.1

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceee--eEEEEEEEECCEEEEEEEEeCCCccc--------ccccchhhc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSA--AFITQTVCLDDVTIRFEIWDTAGQER--------YHTLAPMYY  111 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~e~--------~~~l~~~~~  111 (373)
                      ..+++++|.   |||||+|+|++..+...  +.|.  +.....+.+++.  .+.+|||+|++.        +...+..++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            357889997   99999999999876443  4443  344445556654  478999999863        333456678


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160        112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG  191 (373)
Q Consensus       112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~  191 (373)
                      +.||++|+|||+++..++.. ..|...+..                        .+.|+++|+||+|+...    ..+. 
T Consensus       116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~------------------------~~~piilV~NK~Dl~~~----~~~~-  165 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD-EAVARVLRR------------------------SGKPVILAANKVDDERG----EADA-  165 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHH------------------------cCCCEEEEEECccCCcc----chhh-
Confidence            99999999999998766543 234443333                        46899999999998642    1122 


Q ss_pred             HHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccceeecc
Q psy18160        192 EAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTMA  270 (373)
Q Consensus       192 ~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~~~~~  270 (373)
                      .++. ..++ ..+++||++|.|++++|++|+..+.+......                                      
T Consensus       166 ~~~~-~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~--------------------------------------  206 (472)
T PRK03003        166 AALW-SLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPRVGS--------------------------------------  206 (472)
T ss_pred             HHHH-hcCCCCeEEEEcCCCCCcHHHHHHHHhhccccccccc--------------------------------------
Confidence            2222 2333 35799999999999999999987753110000                                      


Q ss_pred             cCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCccc-ccccCCccccccccceeeeecceeee
Q psy18160        271 NSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFH-EYQESTIGGECQSSHSISFSMPTKNR  349 (373)
Q Consensus       271 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~-~~~~~Tig~~~~~~~~~~~~~~~~~v  349 (373)
                                            .....+|++++|.+++|||||+++++...+. ....|++.        .|+....+.+
T Consensus       207 ----------------------~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT--------~d~~~~~~~~  256 (472)
T PRK03003        207 ----------------------ASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTT--------VDPVDSLIEL  256 (472)
T ss_pred             ----------------------ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcc--------CCcceEEEEE
Confidence                                  0001378999999999999999999987652 23344445        4554456667


Q ss_pred             CCeEEEEEehhhHH
Q psy18160        350 LNNNVPITFVWVIM  363 (373)
Q Consensus       350 ~~~~~~l~iw~~~~  363 (373)
                      +|.++  .|||+|-
T Consensus       257 ~~~~~--~l~DTaG  268 (472)
T PRK03003        257 GGKTW--RFVDTAG  268 (472)
T ss_pred             CCEEE--EEEECCC
Confidence            88765  6899983

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.93  E-value=3e-24  Score=187.21  Aligned_cols=154  Identities=27%  Similarity=0.477  Sum_probs=130.2

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .+++++|.   |||||+++|.++.|...   |++..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            47899998   99999999999988765   666555 356788889999999999999999999989999999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccCHH
Q psy18160        122 DITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVEYS  189 (373)
Q Consensus       122 D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~~~  189 (373)
                      |++++++|+.+. .|+..+..                      ..++.|+++|+||+|+.+.           ...+..+
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~----------------------~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~  138 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKH----------------------FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE  138 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh----------------------hCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHH
Confidence            999999999986 58777655                      2357899999999998642           1335567


Q ss_pred             HHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        190 EGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       190 e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      +++++++..+. +++++||++|.||+++|++|++.+
T Consensus       139 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         139 EGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             HHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence            88888888774 899999999999999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PTZ00099 rab6; Provisional

Probab=99.93  E-value=1.9e-24  Score=189.44  Aligned_cols=133  Identities=42%  Similarity=0.747  Sum_probs=121.7

Q ss_pred             ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccc
Q psy18160         73 LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGR  152 (373)
Q Consensus        73 Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~  152 (373)
                      |+|.++..+.+.+++..+.+.||||+|+++|..++..++++||++|+|||++++.||+.+..|+..+..           
T Consensus        12 Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~-----------   80 (176)
T PTZ00099         12 TIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN-----------   80 (176)
T ss_pred             ccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH-----------
Confidence            999999989999999999999999999999999999999999999999999999999999999998876           


Q ss_pred             cchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        153 AKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       153 ~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                                ....++|++|||||+|+... +.+..+++..+++.++..|+|+||++|.||+++|++|++.+.+.
T Consensus        81 ----------~~~~~~piilVgNK~DL~~~-~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~  144 (176)
T PTZ00099         81 ----------ERGKDVIIALVGNKTDLGDL-RKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL  144 (176)
T ss_pred             ----------hcCCCCeEEEEEECcccccc-cCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence                      22357899999999999765 56888899999999999999999999999999999999988653

>cd04149 Arf6 Arf6 subfamily

Probab=99.92  E-value=1.1e-24  Score=189.56  Aligned_cols=149  Identities=17%  Similarity=0.201  Sum_probs=120.2

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .++++++|.   |||||+++|..+.+...  |+|.++.  .+..  ..+.+++|||+|++++..+++.+++++|++++||
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~   84 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV   84 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence            479999997   99999999998877654  7776653  3333  4578999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH----
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE----  197 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~----  197 (373)
                      |++++.+|+++.+|+..+...                    ....++|++||+||+|+.+.   +..+++.++.+.    
T Consensus        85 D~t~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~  141 (168)
T cd04149          85 DSADRDRIDEARQELHRIIND--------------------REMRDALLLVFANKQDLPDA---MKPHEIQEKLGLTRIR  141 (168)
T ss_pred             eCCchhhHHHHHHHHHHHhcC--------------------HhhcCCcEEEEEECcCCccC---CCHHHHHHHcCCCccC
Confidence            999999999998877666541                    12356899999999998653   566666665422    


Q ss_pred             -cCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        198 -NGLLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       198 -~~~~~~evSak~~~gI~~lf~~L~~  222 (373)
                       ..++++++||++|.||+++|++|++
T Consensus       142 ~~~~~~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         142 DRNWYVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             CCcEEEEEeeCCCCCChHHHHHHHhc
Confidence             2347899999999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.92  E-value=2.1e-24  Score=190.08  Aligned_cols=153  Identities=18%  Similarity=0.204  Sum_probs=119.7

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .++++++|.   |||||+++|..++|...  |+|.++.  .+..  ..+.+++||++|++++..++..+++++|++|+||
T Consensus        17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~   92 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence            468999998   99999999998887655  7776653  3444  3578999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC--
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG--  199 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~--  199 (373)
                      |++++++++++..++..+...                    ...+++|++||+||+|+.+.   .+.++..+...-..  
T Consensus        93 D~s~~~s~~~~~~~l~~~l~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~~~~~l~l~~~~  149 (181)
T PLN00223         93 DSNDRDRVVEARDELHRMLNE--------------------DELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLR  149 (181)
T ss_pred             eCCcHHHHHHHHHHHHHHhcC--------------------HhhCCCCEEEEEECCCCCCC---CCHHHHHHHhCccccC
Confidence            999999999888776665430                    12357899999999999754   34444333222111  


Q ss_pred             ---CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        200 ---LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       200 ---~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                         +.++++||++|+||+++|++|++.+.+
T Consensus       150 ~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        150 QRHWYIQSTCATSGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             CCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence               236689999999999999999988764

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.92  E-value=7.6e-24  Score=182.02  Aligned_cols=155  Identities=27%  Similarity=0.434  Sum_probs=134.3

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      +++++|.   |||||+++++...|...   +.+..+ .+.+.+++..+.+.+|||+|++++..++..+++++|++++|||
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            7888887   99999999999988765   555443 5677788899999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeE
Q psy18160        123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF  202 (373)
Q Consensus       123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~  202 (373)
                      ++++.+|+.+..|+..+...                    ....++|+++|+||+|+... +....++...+++.+++++
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piiiv~NK~D~~~~-~~~~~~~~~~~~~~~~~~~  139 (164)
T cd04139          81 ITDMESFTATAEFREQILRV--------------------KDDDNVPLLLVGNKCDLEDK-RQVSSEEAANLARQWGVPY  139 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEEccccccc-cccCHHHHHHHHHHhCCeE
Confidence            99999999999998888762                    12357999999999999763 4467777888888889999


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        203 METSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       203 ~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +++||+++.|++++|+.|++.+.
T Consensus       140 ~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         140 VETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999988764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04158 ARD1 ARD1 subfamily

Probab=99.92  E-value=3.6e-24  Score=186.28  Aligned_cols=151  Identities=19%  Similarity=0.230  Sum_probs=123.3

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI  123 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~  123 (373)
                      +++++|.   |||||+++|.+..+...  |+|.++.  .+.+  ..+.+.+|||+|++++..++..+++++|++++|||+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            4788887   99999999999877654  7776653  3444  357899999999999999999999999999999999


Q ss_pred             CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC----
Q psy18160        124 TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG----  199 (373)
Q Consensus       124 ~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~----  199 (373)
                      +++.+|+++..|+..+.+.                    ....+.|++||+||+|+..   .++.++++++++..+    
T Consensus        77 s~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~  133 (169)
T cd04158          77 SHRDRVSEAHSELAKLLTE--------------------KELRDALLLIFANKQDVAG---ALSVEEMTELLSLHKLCCG  133 (169)
T ss_pred             CcHHHHHHHHHHHHHHhcC--------------------hhhCCCCEEEEEeCcCccc---CCCHHHHHHHhCCccccCC
Confidence            9999999999998887651                    1234689999999999964   267777777664322    


Q ss_pred             --CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        200 --LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       200 --~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                        +.++++||++|.||+++|++|++.+..
T Consensus       134 ~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~  162 (169)
T cd04158         134 RSWYIQGCDARSGMGLYEGLDWLSRQLVA  162 (169)
T ss_pred             CcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence              268899999999999999999987764

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd00154 Rab Rab family

Probab=99.92  E-value=1.1e-23  Score=178.93  Aligned_cols=152  Identities=43%  Similarity=0.724  Sum_probs=136.6

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||++++.+..+...   |.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            36888997   99999999999998875   8888888888888888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++++++.+..|+..+..                     ......|+++|+||+|+... .....++..+++..++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~---------------------~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~  138 (159)
T cd00154          81 DITNRESFENLDKWLKELKE---------------------YAPENIPIILVGNKIDLEDQ-RQVSTEEAQQFAKENGLL  138 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHH---------------------hCCCCCcEEEEEEccccccc-ccccHHHHHHHHHHcCCe
Confidence            99999999999999988877                     23367899999999999633 457788899999988999


Q ss_pred             EEEEcCCCCCCHHHHHHHHH
Q psy18160        202 FMETSAKTAMNVNEIFVEIA  221 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~  221 (373)
                      ++++||+++.|++++|++|+
T Consensus       139 ~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         139 FFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             EEEEecCCCCCHHHHHHHHh
Confidence            99999999999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.92  E-value=6.1e-24  Score=187.40  Aligned_cols=161  Identities=19%  Similarity=0.214  Sum_probs=129.4

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEE-CCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCL-DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|.   |||||++++..+.+...  |.|.++....+.+ ++..+.+.+|||+|++++..++..+++++|++++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            3578999997   99999999999888765  7777766555554 4467899999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH--
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE--  197 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~--  197 (373)
                      |||++++.+++.+..|+.++...                    ....+.|++||+||+|+...   +..++..+++..  
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~--------------------~~~~~~p~iiv~NK~D~~~~---~~~~~~~~~~~~~~  138 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRF--------------------SENQGVPVLVLANKQDLPNA---LSVSEVEKLLALHE  138 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhh--------------------hhcCCCcEEEEEECcCcccc---CCHHHHHHHhCccc
Confidence            99999999999998888877651                    12247899999999998643   445555554421  


Q ss_pred             ----cCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        198 ----NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       198 ----~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                          .+++++++||+++.||+++|++|++.+.+.+.
T Consensus       139 ~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~  174 (183)
T cd04152         139 LSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRK  174 (183)
T ss_pred             cCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHHh
Confidence                12468999999999999999999998865444

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.92  E-value=1.2e-23  Score=187.88  Aligned_cols=156  Identities=22%  Similarity=0.324  Sum_probs=130.4

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      +++++|.   |||||+++|+++.+...   |++ ++..+.+.+++..+.+++||++|+++|..++..+++++|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            4788887   99999999999988775   554 4556778888888999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH-HcCCe
Q psy18160        123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE-ENGLL  201 (373)
Q Consensus       123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~-~~~~~  201 (373)
                      ++++.+|+.+..|+..+...                    ....++|++||+||+|+....+.+..++..+.+. ..+.+
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~  139 (198)
T cd04147          80 VDDPESFEEVERLREEILEV--------------------KEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCG  139 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHh--------------------cCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCc
Confidence            99999999999998887762                    2235799999999999965335566655555443 45678


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++++||++|.||+++|++|++.+.
T Consensus       140 ~~~~Sa~~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         140 FVETSAKDNENVLEVFKELLRQAN  163 (198)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHhh
Confidence            999999999999999999998765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.92  E-value=4.9e-24  Score=183.69  Aligned_cols=148  Identities=19%  Similarity=0.250  Sum_probs=115.1

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      ++++++|.   |||||++++..+.|...  |+|.++.  .+.+  ..+.+.+|||+|++++..++..+++++|++++|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            47889987   99999999988888754  7776653  3444  35789999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH-HHHH----HH
Q psy18160        123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG-EAYA----EE  197 (373)
Q Consensus       123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~-~~~~----~~  197 (373)
                      ++++.+|+.+.+|+..+...                    ....++|++|++||+|+.+.   ...++. ..+.    ..
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~  133 (159)
T cd04150          77 SNDRERIGEAREELQRMLNE--------------------DELRDAVLLVFANKQDLPNA---MSAAEVTDKLGLHSLRN  133 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhc--------------------HHhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCC
Confidence            99999999998877766431                    12246899999999999653   233332 2221    11


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        198 NGLLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       198 ~~~~~~evSak~~~gI~~lf~~L~~  222 (373)
                      .++.++++||++|+||+++|++|++
T Consensus       134 ~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         134 RNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             CCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            2345789999999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.91  E-value=9e-24  Score=184.97  Aligned_cols=151  Identities=21%  Similarity=0.230  Sum_probs=118.8

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .++++++|.   |||||+++|..+++...  |+|.++.  .+..  ..+.+++|||+|++++..++..+++++|++|+||
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~   88 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV   88 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence            478999997   99999999988877544  7776653  3444  3478999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH-----
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE-----  196 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~-----  196 (373)
                      |++++++++++.+|+..+...                    ...+++|++||+||+|+.+.   .+.++..+...     
T Consensus        89 D~t~~~s~~~~~~~l~~~~~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~  145 (175)
T smart00177       89 DSNDRDRIDEAREELHRMLNE--------------------DELRDAVILVFANKQDLPDA---MKAAEITEKLGLHSIR  145 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHhhC--------------------HhhcCCcEEEEEeCcCcccC---CCHHHHHHHhCccccC
Confidence            999999999998888776541                    12357899999999999653   23333332221     


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      ...+.++++||++|.||+++|++|...+
T Consensus       146 ~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      146 DRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             CCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            1223577999999999999999998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.91  E-value=1.9e-24  Score=187.28  Aligned_cols=146  Identities=18%  Similarity=0.232  Sum_probs=119.4

Q ss_pred             EEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160         50 QIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI  123 (373)
Q Consensus        50 ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~  123 (373)
                      ++++|.   |||||+++|.++.+...   |+|.++    +.+++..+.+.+||++|+++|..++..+++++|++++|||+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            578887   99999999999877665   777543    33455678899999999999999999999999999999999


Q ss_pred             CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH----HHHHHHHHHcC
Q psy18160        124 TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY----SEGEAYAEENG  199 (373)
Q Consensus       124 ~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~----~e~~~~~~~~~  199 (373)
                      +++.+|..+..|+..+..                     . .+++|+++|+||.|+... +.++.    .++.+++++.+
T Consensus        78 t~~~s~~~~~~~l~~~~~---------------------~-~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~  134 (164)
T cd04162          78 ADSERLPLARQELHQLLQ---------------------H-PPDLPLVVLANKQDLPAA-RSVQEIHKELELEPIARGRR  134 (164)
T ss_pred             CCHHHHHHHHHHHHHHHh---------------------C-CCCCcEEEEEeCcCCcCC-CCHHHHHHHhCChhhcCCCc
Confidence            999999999988887754                     1 268999999999999765 32221    23456667778


Q ss_pred             CeEEEEcCCC------CCCHHHHHHHHHH
Q psy18160        200 LLFMETSAKT------AMNVNEIFVEIAK  222 (373)
Q Consensus       200 ~~~~evSak~------~~gI~~lf~~L~~  222 (373)
                      ++++++||++      ++||+++|+.++.
T Consensus       135 ~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         135 WILQGTSLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             eEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence            8999999998      9999999998763

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.91  E-value=9.4e-24  Score=188.68  Aligned_cols=161  Identities=13%  Similarity=0.182  Sum_probs=123.3

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC-----CEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD-----DVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~-----~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      ++++++|+   |||||+++|+++.|...   |+|.++..+.+.++     +..+.++||||+|+++|..++..+|+++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            47899998   99999999999998776   99988888888774     578999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH----HH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE----GE  192 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e----~~  192 (373)
                      +|+|||+++++||+++..|+.++........+.........  -......++|++|||||+|+.+. +.+..+.    ..
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~--~~~~~~~~~PiilVGnK~Dl~~~-r~~~~~~~~~~~~  157 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYD--SEQFGGNQIPLLVIGTKLDQIPE-KESSGNLVLTARG  157 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhcccccccccccccc--ccccCCCCceEEEEEECccchhh-cccchHHHhhHhh
Confidence            99999999999999999999998763211000000000000  00012357999999999999765 4454443    44


Q ss_pred             HHHHHcCCeEEEEcCCCCC
Q psy18160        193 AYAEENGLLFMETSAKTAM  211 (373)
Q Consensus       193 ~~~~~~~~~~~evSak~~~  211 (373)
                      .+|++.+++.++.++++..
T Consensus       158 ~ia~~~~~~~i~~~c~~~~  176 (202)
T cd04102         158 FVAEQGNAEEINLNCTNGR  176 (202)
T ss_pred             hHHHhcCCceEEEecCCcc
Confidence            6788999999999988654

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.91  E-value=3.4e-23  Score=187.25  Aligned_cols=161  Identities=26%  Similarity=0.420  Sum_probs=138.5

Q ss_pred             CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCc
Q psy18160         42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQ  115 (373)
Q Consensus        42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad  115 (373)
                      +.+...++++++|.   |||||+++++.+.+...   |++.++....+..++..+.+++|||+|+++|..++..+++.++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            44455689999998   99999999998888765   8998888888888889999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH
Q psy18160        116 AAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA  195 (373)
Q Consensus       116 ~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~  195 (373)
                      ++++|||++++.+|..+..|+..+...                      ..++|+++||||+|+.+  +.+.. +...++
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~----------------------~~~~~i~lv~nK~Dl~~--~~~~~-~~~~~~  138 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRV----------------------CENIPIVLVGNKVDVKD--RQVKA-RQITFH  138 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHh----------------------CCCCCEEEEEECccCcc--ccCCH-HHHHHH
Confidence            999999999999999999999888761                      25789999999999864  33333 334677


Q ss_pred             HHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       196 ~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +..++.++++||++|.|++++|.+|++.+...
T Consensus       139 ~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~  170 (215)
T PTZ00132        139 RKKNLQYYDISAKSNYNFEKPFLWLARRLTND  170 (215)
T ss_pred             HHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence            88889999999999999999999999988743

>cd00157 Rho Rho (Ras homology) family

Probab=99.91  E-value=3.7e-23  Score=179.26  Aligned_cols=152  Identities=30%  Similarity=0.493  Sum_probs=127.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++|++..+...   |+. +.....+..++..+.+++||++|++++..+...+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            47899997   99999999999998544   443 334556677888999999999999999988999999999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc----------ccCHHH
Q psy18160        122 DITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR----------CVEYSE  190 (373)
Q Consensus       122 D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~----------~v~~~e  190 (373)
                      |++++.+|..+. .|+..+..                      ...+.|+++|+||+|+.....          .+..++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~----------------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~  137 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRH----------------------YCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEE  137 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh----------------------hCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHH
Confidence            999999998876 57776655                      224799999999999976521          345778


Q ss_pred             HHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHH
Q psy18160        191 GEAYAEENGL-LFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       191 ~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~  222 (373)
                      +.+++..++. +|+++||++|.|++++|++|++
T Consensus       138 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         138 GEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             HHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence            8888888887 9999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.91  E-value=1.5e-23  Score=184.85  Aligned_cols=155  Identities=18%  Similarity=0.226  Sum_probs=120.2

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .++++++|.   |||||++++..+.+...  |+|.++.  .+..  ..+.+++|||+|+++++.++..+++++|++|+||
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~   92 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVV   92 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            478999997   99999999988877655  7776653  3444  4578999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH-----H
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA-----E  196 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~-----~  196 (373)
                      |++++++|+++.+++..+...                    ....++|++||+||.|+.+.   +..++.....     +
T Consensus        93 D~t~~~s~~~~~~~l~~~~~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~i~~~l~~~~~~  149 (182)
T PTZ00133         93 DSNDRERIGDAREELERMLSE--------------------DELRDAVLLVFANKQDLPNA---MSTTEVTEKLGLHSVR  149 (182)
T ss_pred             eCCCHHHHHHHHHHHHHHHhC--------------------HhhcCCCEEEEEeCCCCCCC---CCHHHHHHHhCCCccc
Confidence            999999999988777665430                    12246899999999998653   3333332221     1


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      ...+.++++||++|.|++++|++|++.+.+++
T Consensus       150 ~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~  181 (182)
T PTZ00133        150 QRNWYIQGCCATTAQGLYEGLDWLSANIKKSM  181 (182)
T ss_pred             CCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence            11235679999999999999999998887543

>cd00876 Ras Ras family

Probab=99.91  E-value=4.7e-23  Score=176.22  Aligned_cols=154  Identities=31%  Similarity=0.502  Sum_probs=133.0

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      +++++|.   |||||++++++..+...   +.+ +...+.+.+++..+.+++||++|++.+..++..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            4788887   99999999998876655   444 5556777788888999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeE
Q psy18160        123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF  202 (373)
Q Consensus       123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~  202 (373)
                      ++++++++++..|...+...                    ......|+++|+||+|+... +.+..+++.++++.++.++
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~  138 (160)
T cd00876          80 ITDRESFEEIKGYREQILRV--------------------KDDEDIPIVLVGNKCDLENE-RQVSKEEGKALAKEWGCPF  138 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHh--------------------cCCCCCcEEEEEECCccccc-ceecHHHHHHHHHHcCCcE
Confidence            99999999999988887762                    12257899999999999764 5677888999999988999


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHc
Q psy18160        203 METSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       203 ~evSak~~~gI~~lf~~L~~~i  224 (373)
                      +++||+++.|++++|++|++.+
T Consensus       139 ~~~S~~~~~~i~~l~~~l~~~i  160 (160)
T cd00876         139 IETSAKDNINIDEVFKLLVREI  160 (160)
T ss_pred             EEeccCCCCCHHHHHHHHHhhC
Confidence            9999999999999999998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04154 Arl2 Arl2 subfamily

Probab=99.91  E-value=1.9e-23  Score=182.24  Aligned_cols=150  Identities=18%  Similarity=0.180  Sum_probs=120.4

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..++++++|.   |||||+++|.+..+...  |+|..  .+.+.++  .+.+.+|||+|++.+..++..+++++|++++|
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWV   88 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            4478999997   99999999998866544  66643  4455665  37789999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH----
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE----  196 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~----  196 (373)
                      ||++++.+|..+..|+..+...                    ....++|++||+||+|+.+.   ...+++.++.+    
T Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~  145 (173)
T cd04154          89 VDSSDRLRLDDCKRELKELLQE--------------------ERLAGATLLILANKQDLPGA---LSEEEIREALELDKI  145 (173)
T ss_pred             EECCCHHHHHHHHHHHHHHHhC--------------------hhhcCCCEEEEEECcccccC---CCHHHHHHHhCcccc
Confidence            9999999999998888776541                    12357899999999999653   34555555543    


Q ss_pred             -HcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        197 -ENGLLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       197 -~~~~~~~evSak~~~gI~~lf~~L~~  222 (373)
                       ..+++++++||++|.|++++|++|+.
T Consensus       146 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         146 SSHHWRIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             CCCceEEEeccCCCCcCHHHHHHHHhc
Confidence             23568999999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01893 Miro1 Miro1 subfamily

Probab=99.91  E-value=5.5e-23  Score=178.15  Aligned_cols=155  Identities=21%  Similarity=0.251  Sum_probs=121.2

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      ++++++|+   |||||+++|.++.|...  +...++ .....+++..+.+.+|||+|++++...+..+++.+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            37899998   99999999999998765  222232 3445667788999999999999888888888999999999999


Q ss_pred             CCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccC-HHHHHHHHHHcC-
Q psy18160        123 ITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-YSEGEAYAEENG-  199 (373)
Q Consensus       123 ~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~-~~e~~~~~~~~~-  199 (373)
                      ++++.+|+.+. .|+..+..                     . ..++|+++|+||+|+.+...... .++...+++.+. 
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~---------------------~-~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  137 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRR---------------------L-GVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE  137 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHH---------------------h-CCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc
Confidence            99999999985 68777765                     2 24789999999999976421111 233334444433 


Q ss_pred             -CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        200 -LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       200 -~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                       .+++++||+++.|++++|+.+.+.+.
T Consensus       138 ~~~~~e~Sa~~~~~v~~lf~~~~~~~~  164 (166)
T cd01893         138 IETCVECSAKTLINVSEVFYYAQKAVL  164 (166)
T ss_pred             ccEEEEeccccccCHHHHHHHHHHHhc
Confidence             37999999999999999999988765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.90  E-value=1.3e-22  Score=177.95  Aligned_cols=159  Identities=29%  Similarity=0.405  Sum_probs=135.1

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .+++++|.   |||||+++|.+..+...   |.+..+ .+.+.+++..+.+++|||+|+++|..++..++..+|++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            47888887   99999999999988664   555444 466778888889999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |+++..+|+.+..|+..+.+.                    ....+.|+++|+||+|+... +.+..++...+++..+.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~  139 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDM--------------------LGKESVPIVLVGNKSDLHTQ-RQVSTEEGKELAESWGAA  139 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEEchhhhhc-CccCHHHHHHHHHHcCCe
Confidence            999999999999988887662                    22357899999999999754 556677778888888899


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      ++++||+++.|++++|.+|++.+....
T Consensus       140 ~~~~Sa~~~~gv~~l~~~l~~~~~~~~  166 (180)
T cd04137         140 FLESSARENENVEEAFELLIEEIEKVE  166 (180)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999998886443

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PLN00023 GTP-binding protein; Provisional

Probab=99.89  E-value=2.2e-22  Score=188.84  Aligned_cols=151  Identities=17%  Similarity=0.290  Sum_probs=120.4

Q ss_pred             CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECC-------------EEEEEEEEeCCCcc
Q psy18160         41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDD-------------VTIRFEIWDTAGQE  101 (373)
Q Consensus        41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~-------------~~v~l~i~Dt~G~e  101 (373)
                      +-++...+|++++|+   |||||+++|+++.|...   |+|.++..+.+.+++             ..+.++||||+|++
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE   94 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE   94 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence            455667799999998   99999999999988765   999999888888753             57899999999999


Q ss_pred             cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160        102 RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT  181 (373)
Q Consensus       102 ~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  181 (373)
                      +|..++..|++++|++|+|||++++.||+++..|+..+........+.. +        ......++|++|||||+||..
T Consensus        95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~-s--------~~~~~~~ipIILVGNK~DL~~  165 (334)
T PLN00023         95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLG-S--------GGPGGLPVPYIVIGNKADIAP  165 (334)
T ss_pred             hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccc-c--------ccccCCCCcEEEEEECccccc
Confidence            9999999999999999999999999999999999999976311000000 0        000123689999999999965


Q ss_pred             CC--cc---cCHHHHHHHHHHcCC
Q psy18160        182 SR--RC---VEYSEGEAYAEENGL  200 (373)
Q Consensus       182 ~~--~~---v~~~e~~~~~~~~~~  200 (373)
                      ..  +.   +..+++++||+++++
T Consensus       166 ~~~~r~~s~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        166 KEGTRGSSGNLVDAARQWVEKQGL  189 (334)
T ss_pred             cccccccccccHHHHHHHHHHcCC
Confidence            42  22   368899999999884

>cd04157 Arl6 Arl6 subfamily

Probab=99.89  E-value=6.2e-23  Score=176.28  Aligned_cols=149  Identities=16%  Similarity=0.158  Sum_probs=112.2

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcC-cCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVF-YPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~-~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      +++++|.   |||||+++|.+..+ ...   |+|..+.  .+.  ...+.+.+|||+|++++..++..+++++|++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            3678887   99999999998764 322   6665432  233  24578899999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH---HH--
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY---AE--  196 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~---~~--  196 (373)
                      |++++.+|..+..|+..+....                  .....++|++||+||+|+...   ...++..+.   ..  
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~p~iiv~NK~Dl~~~---~~~~~~~~~l~~~~~~  135 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHP------------------DIKHRRVPILFFANKMDLPDA---LTAVKITQLLGLENIK  135 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCc------------------ccccCCCCEEEEEeCccccCC---CCHHHHHHHhCCcccc
Confidence            9999999999888887765410                  011257999999999999654   222232222   11  


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~  222 (373)
                      ...++++++||++|.|++++|++|++
T Consensus       136 ~~~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         136 DKPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             CceEEEEEeeCCCCCchHHHHHHHhc
Confidence            12346899999999999999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.89  E-value=1.9e-22  Score=173.14  Aligned_cols=148  Identities=18%  Similarity=0.256  Sum_probs=115.8

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI  123 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~  123 (373)
                      +++++|.   |||||+++|.++.+...  |++.++  ..+..+ ..+.+.+|||+|++++..++..+++++|++++|+|+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            4678887   99999999999988655  666554  344443 457899999999999999999999999999999999


Q ss_pred             CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH------HHH
Q psy18160        124 TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY------AEE  197 (373)
Q Consensus       124 ~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~------~~~  197 (373)
                      +++.++..+..|+..+...                    ....+.|+++|+||+|+...   ...++....      +..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~  134 (160)
T cd04156          78 SDEARLDESQKELKHILKN--------------------EHIKGVPVVLLANKQDLPGA---LTAEEITRRFKLKKYCSD  134 (160)
T ss_pred             CcHHHHHHHHHHHHHHHhc--------------------hhhcCCCEEEEEECcccccC---cCHHHHHHHcCCcccCCC
Confidence            9999999998888776541                    12257899999999998643   233333222      222


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        198 NGLLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       198 ~~~~~~evSak~~~gI~~lf~~L~~  222 (373)
                      .+++++++||++|+||+++|++|++
T Consensus       135 ~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         135 RDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             CcEEEEecccccCCChHHHHHHHhc
Confidence            3457999999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.88  E-value=4.3e-22  Score=174.05  Aligned_cols=149  Identities=19%  Similarity=0.189  Sum_probs=117.7

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ..+++++|.   |||||++++..+++...  |++.++.  .+.++  .+.+.+||++|++++...+..+++++|++++||
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~   90 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI   90 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence            468899997   99999999998887765  7776653  34444  477999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH-HHH----H
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE-AYA----E  196 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~-~~~----~  196 (373)
                      |++++++|..+.+++..+...                    ....++|++|++||+|+...   .+.++.. .+.    +
T Consensus        91 D~s~~~~~~~~~~~l~~~~~~--------------------~~~~~~p~viv~NK~Dl~~~---~~~~~i~~~l~~~~~~  147 (174)
T cd04153          91 DSTDRERLPLTKEELYKMLAH--------------------EDLRKAVLLVLANKQDLKGA---MTPAEISESLGLTSIR  147 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHhc--------------------hhhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccc
Confidence            999999999888777766541                    12356899999999998653   3344332 222    2


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~  222 (373)
                      ..+++++++||++|.||+++|++|++
T Consensus       148 ~~~~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         148 DHTWHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             CCceEEEecccCCCCCHHHHHHHHhc
Confidence            34567999999999999999999874

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.88  E-value=4.4e-22  Score=209.08  Aligned_cols=215  Identities=18%  Similarity=0.089  Sum_probs=142.0

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEE--EEEEEECCEEEEEEEEeCCCccc--------ccccchhh
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFI--TQTVCLDDVTIRFEIWDTAGQER--------YHTLAPMY  110 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~--~~~i~~~~~~v~l~i~Dt~G~e~--------~~~l~~~~  110 (373)
                      ...+++++|.   |||||+|+|++......  ++|++..  ......++  ..+.+|||+|.+.        +......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            4467888887   99999999998875443  5554433  23333444  4588999999764        22334456


Q ss_pred             ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160        111 YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE  190 (373)
Q Consensus       111 ~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e  190 (373)
                      ++.+|++++|+|+++.....+ ..|...+..                        .+.|+++|+||+|+...     ...
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~------------------------~~~pvIlV~NK~D~~~~-----~~~  401 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR------------------------AGKPVVLAVNKIDDQAS-----EYD  401 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh------------------------cCCCEEEEEECcccccc-----hhh
Confidence            889999999999986432221 134444433                        47899999999998542     112


Q ss_pred             HHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccceeec
Q psy18160        191 GEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTM  269 (373)
Q Consensus       191 ~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~~~~  269 (373)
                      ..++.. +++ ..+++||++|.||+++|++|++.+........                                     
T Consensus       402 ~~~~~~-lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~-------------------------------------  443 (712)
T PRK09518        402 AAEFWK-LGLGEPYPISAMHGRGVGDLLDEALDSLKVAEKTSG-------------------------------------  443 (712)
T ss_pred             HHHHHH-cCCCCeEEEECCCCCCchHHHHHHHHhccccccccc-------------------------------------
Confidence            222222 233 46799999999999999999987753110000                                     


Q ss_pred             ccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCcc--cccccCCccccccccceeeeeccee
Q psy18160        270 ANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQF--HEYQESTIGGECQSSHSISFSMPTK  347 (373)
Q Consensus       270 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~  347 (373)
                                .   .        ......|++++|.+++|||||+++++...+  ...+.+|.         .+.....+
T Consensus       444 ----------a---~--------~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT---------~d~~~~~~  493 (712)
T PRK09518        444 ----------F---L--------TPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTT---------RDPVDEIV  493 (712)
T ss_pred             ----------c---c--------CCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCC---------cCcceeEE
Confidence                      0   0        000126899999999999999999998764  45555444         34433556


Q ss_pred             eeCCeEEEEEehhhH
Q psy18160        348 NRLNNNVPITFVWVI  362 (373)
Q Consensus       348 ~v~~~~~~l~iw~~~  362 (373)
                      .++|.++.  |||++
T Consensus       494 ~~~~~~~~--liDTa  506 (712)
T PRK09518        494 EIDGEDWL--FIDTA  506 (712)
T ss_pred             EECCCEEE--EEECC
Confidence            67887654  89988

>cd04151 Arl1 Arl1 subfamily

Probab=99.88  E-value=2.6e-22  Score=172.32  Aligned_cols=147  Identities=20%  Similarity=0.235  Sum_probs=111.6

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI  123 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~  123 (373)
                      +++++|.   |||||++++..+.+...  |++.++.  .+..  ..+.+++|||+|++++..++..+++.+|++++|+|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            4788887   99999999988877654  6666543  3333  347899999999999999999999999999999999


Q ss_pred             CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH-HH----HHc
Q psy18160        124 TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA-YA----EEN  198 (373)
Q Consensus       124 ~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~-~~----~~~  198 (373)
                      +++.++....+++..+.+.                    ....++|++||+||+|+.+.   ....+..+ +.    +..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~piiiv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~  133 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEE--------------------EELKGAVLLVFANKQDMPGA---LSEAEISEKLGLSELKDR  133 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhc--------------------hhhcCCcEEEEEeCCCCCCC---CCHHHHHHHhCccccCCC
Confidence            9999888776665544330                    12247899999999998653   22233222 11    112


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~  222 (373)
                      +.+++++||+++.||+++|++|++
T Consensus       134 ~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         134 TWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             cEEEEEeeccCCCCHHHHHHHHhc
Confidence            357999999999999999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00879 Sar1 Sar1 subfamily

Probab=99.88  E-value=1.5e-21  Score=172.78  Aligned_cols=151  Identities=17%  Similarity=0.231  Sum_probs=121.3

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ..+++++|.   |||||++++.++.+...  |++..  ...+.+++  +.+.+||++|++++..++..+++++|++++|+
T Consensus        19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~   94 (190)
T cd00879          19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLV   94 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence            468899997   99999999999887654  55544  34556665  56889999999999989999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH----
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE----  197 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~----  197 (373)
                      |+++..+|.....|+..+...                    ....+.|++||+||+|+..   .+..++.+++.+.    
T Consensus        95 D~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~pvivv~NK~Dl~~---~~~~~~~~~~~~~~~~~  151 (190)
T cd00879          95 DAADPERFQESKEELDSLLSD--------------------EELANVPFLILGNKIDLPG---AVSEEELRQALGLYGTT  151 (190)
T ss_pred             ECCcHHHHHHHHHHHHHHHcC--------------------ccccCCCEEEEEeCCCCCC---CcCHHHHHHHhCccccc
Confidence            999999999888887776541                    2235689999999999864   3666777666542    


Q ss_pred             ------------cCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        198 ------------NGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       198 ------------~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                                  ..++++++||++++|++++|++|++.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         152 TGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             ccccccccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence                        224689999999999999999998653

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=6.5e-22  Score=197.02  Aligned_cols=211  Identities=15%  Similarity=0.079  Sum_probs=140.5

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc--ceee--eEEEEEEEECCEEEEEEEEeCCCc--------ccccccchhhccC
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSA--AFITQTVCLDDVTIRFEIWDTAGQ--------ERYHTLAPMYYRN  113 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~--------e~~~~l~~~~~~~  113 (373)
                      +++++|.   |||||+|+|++......  +.|.  +.....+.+++.  .+.+|||+|.        +.+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            3678887   99999999999875432  3333  344455556664  5899999996        3344455667899


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160        114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA  193 (373)
Q Consensus       114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~  193 (373)
                      +|++++|+|..+..+..+. .+...+.+                        .+.|+++|+||+|+....  .   ...+
T Consensus        79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~------------------------~~~piilVvNK~D~~~~~--~---~~~~  128 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE-EIAKWLRK------------------------SGKPVILVANKIDGKKED--A---VAAE  128 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH-HHHHHHHH------------------------hCCCEEEEEECccCCccc--c---cHHH
Confidence            9999999999875444331 12222222                        357999999999986541  1   1222


Q ss_pred             HHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccceeecccC
Q psy18160        194 YAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTMANS  272 (373)
Q Consensus       194 ~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~~~~~~~  272 (373)
                      + ..+++ +++++||++|.|++++++.+.+.+.......                                         
T Consensus       129 ~-~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~-----------------------------------------  166 (429)
T TIGR03594       129 F-YSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEEE-----------------------------------------  166 (429)
T ss_pred             H-HhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccccc-----------------------------------------
Confidence            2 35566 7999999999999999999987774311100                                         


Q ss_pred             CCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCcc--cccccCCccccccccceeeeecceeeeC
Q psy18160        273 NNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQF--HEYQESTIGGECQSSHSISFSMPTKNRL  350 (373)
Q Consensus       273 ~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~~v~  350 (373)
                                         ......+|++++|.+++|||+|+++++....  ...+..|.         .+.....+..+
T Consensus       167 -------------------~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt---------~~~~~~~~~~~  218 (429)
T TIGR03594       167 -------------------EEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTT---------RDSIDIPFERN  218 (429)
T ss_pred             -------------------cccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCce---------ECcEeEEEEEC
Confidence                               0001237899999999999999999997653  23333333         23322344456


Q ss_pred             CeEEEEEehhhHH
Q psy18160        351 NNNVPITFVWVIM  363 (373)
Q Consensus       351 ~~~~~l~iw~~~~  363 (373)
                      |.  .+.|||++-
T Consensus       219 ~~--~~~liDT~G  229 (429)
T TIGR03594       219 GK--KYLLIDTAG  229 (429)
T ss_pred             Cc--EEEEEECCC
Confidence            65  678899863

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.87  E-value=1.8e-21  Score=168.98  Aligned_cols=148  Identities=17%  Similarity=0.134  Sum_probs=113.9

Q ss_pred             EEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160         50 QIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI  123 (373)
Q Consensus        50 ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~  123 (373)
                      ++++|.   |||||+++|.+. +...   |+|..  .+.+..+  .+.+++||++|+++++.++..|++++|++++|||+
T Consensus         2 i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           2 LLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             EEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            678887   999999999977 4433   77754  3455554  47789999999999999999999999999999999


Q ss_pred             CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH---HHHHHHHcC-
Q psy18160        124 TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE---GEAYAEENG-  199 (373)
Q Consensus       124 ~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e---~~~~~~~~~-  199 (373)
                      +++.+|+++..|+..+...                    ....++|++||+||+|+.......+..+   ..+++++.+ 
T Consensus        77 s~~~s~~~~~~~l~~l~~~--------------------~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~  136 (167)
T cd04161          77 SDDDRVQEVKEILRELLQH--------------------PRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKS  136 (167)
T ss_pred             CchhHHHHHHHHHHHHHcC--------------------ccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCc
Confidence            9999999999998887651                    1235789999999999976521111112   123333333 


Q ss_pred             -CeEEEEcCCCC------CCHHHHHHHHHH
Q psy18160        200 -LLFMETSAKTA------MNVNEIFVEIAK  222 (373)
Q Consensus       200 -~~~~evSak~~------~gI~~lf~~L~~  222 (373)
                       +.++++||++|      .|+++.|+||..
T Consensus       137 ~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         137 LCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             eEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence             46788999998      899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.86  E-value=3.4e-21  Score=166.49  Aligned_cols=147  Identities=22%  Similarity=0.280  Sum_probs=114.5

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCc------Cc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFY------PY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~------~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      +++++|.   |||||++++.+....      ..   |++.++.  .+.++  ...+.+|||+|++.+..++..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            3678887   999999999864321      11   6665553  45555  4678999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE  196 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~  196 (373)
                      +++|+|+++++++..+..|+..+...                    ....++|++||+||+|+...   +..++..++.+
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~p~ilv~NK~D~~~~---~~~~~~~~~~~  133 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRN--------------------EALEGVPLLILANKQDLPDA---LSVEEIKEVFQ  133 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhC--------------------hhhcCCCEEEEEEccccccC---CCHHHHHHHhc
Confidence            99999999999999988888776551                    22357899999999998653   44555555543


Q ss_pred             H-------cCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        197 E-------NGLLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       197 ~-------~~~~~~evSak~~~gI~~lf~~L~~  222 (373)
                      .       .+.+++++||++|.|++++|++|++
T Consensus       134 ~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         134 DKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             cccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            3       2457999999999999999999875

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.86  E-value=5.6e-21  Score=163.75  Aligned_cols=147  Identities=20%  Similarity=0.204  Sum_probs=116.7

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI  123 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~  123 (373)
                      +++++|.   |||||++++++..+...  |++...  ..+.++  .+.+.+||++|++++..++..+++++|++++|||+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            4788886   99999999999986555  666544  344554  46799999999999999999999999999999999


Q ss_pred             CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH-----c
Q psy18160        124 TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-----N  198 (373)
Q Consensus       124 ~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~-----~  198 (373)
                      +++.++..+..|+..+...                    ....+.|+++|+||+|+...   ...++..+....     .
T Consensus        77 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~piiiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~  133 (158)
T cd00878          77 SDRERIEEAKEELHKLLNE--------------------EELKGVPLLIFANKQDLPGA---LSVSELIEKLGLEKILGR  133 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhC--------------------cccCCCcEEEEeeccCCccc---cCHHHHHHhhChhhccCC
Confidence            9999999998888777651                    12357899999999998764   233444333322     3


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~  222 (373)
                      ..+++++||++|.|++++|++|+.
T Consensus       134 ~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         134 RWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             cEEEEEeeCCCCCCHHHHHHHHhh
Confidence            457999999999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01890 LepA LepA subfamily

Probab=99.86  E-value=4.6e-21  Score=167.69  Aligned_cols=149  Identities=19%  Similarity=0.212  Sum_probs=113.1

Q ss_pred             EEEEEcC---ChhHHHHHhhhCc-------CcCc---------ceeeeEEEEEEEE-----CCEEEEEEEEeCCCccccc
Q psy18160         49 AQIWLKD---RVDCMTQIVINVV-------FYPY---------LFSAAFITQTVCL-----DDVTIRFEIWDTAGQERYH  104 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~-------~~~~---------Tig~~~~~~~i~~-----~~~~v~l~i~Dt~G~e~~~  104 (373)
                      .++++|.   |||||+++|++..       +...         +.|.++..+.+.+     ++..+.+.+|||+|+++|.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            4678887   9999999999742       1111         3455555544443     6778899999999999999


Q ss_pred             ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc
Q psy18160        105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR  184 (373)
Q Consensus       105 ~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~  184 (373)
                      .++..+++++|++|+|||+++..+++....|.... .                        .++|+++|+||+|+.+.  
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~------------------------~~~~iiiv~NK~Dl~~~--  134 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E------------------------NNLEIIPVINKIDLPSA--  134 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H------------------------cCCCEEEEEECCCCCcC--
Confidence            99999999999999999999887777666554322 2                        36789999999998643  


Q ss_pred             ccCHHHHHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        185 CVEYSEGEAYAEENGLL---FMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       185 ~v~~~e~~~~~~~~~~~---~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                       ...+...++++.++++   ++++||++|.|++++|++|++.+.
T Consensus       135 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         135 -DPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             -CHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence             1223345666666663   899999999999999999988763

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=6.3e-21  Score=190.27  Aligned_cols=208  Identities=17%  Similarity=0.112  Sum_probs=136.8

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc--ce--eeeEEEEEEEECCEEEEEEEEeCCCccc--------ccccchhhcc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY--LF--SAAFITQTVCLDDVTIRFEIWDTAGQER--------YHTLAPMYYR  112 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Ti--g~~~~~~~i~~~~~~v~l~i~Dt~G~e~--------~~~l~~~~~~  112 (373)
                      .+++++|.   |||||+|+|++.+....  +.  +.++....+.+++  ..+.+|||+|++.        +......+++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            36788887   99999999998875432  22  2344555666766  6789999999986        2223455688


Q ss_pred             CCcEEEEEEECCCHhhHHH--HHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160        113 NAQAAIIVYDITNQDTFGR--AKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE  190 (373)
Q Consensus       113 ~ad~iilv~D~~~~~Sf~~--i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e  190 (373)
                      ++|++++|+|++++.+..+  +.+|+   ..                        .+.|+++|+||+|+.+.     .+.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l---~~------------------------~~~piilv~NK~D~~~~-----~~~  127 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKIL---RK------------------------SNKPVILVVNKVDGPDE-----EAD  127 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHH---HH------------------------cCCcEEEEEECccCccc-----hhh
Confidence            9999999999987644332  22332   22                        26799999999997542     122


Q ss_pred             HHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccceeec
Q psy18160        191 GEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTM  269 (373)
Q Consensus       191 ~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~~~~  269 (373)
                      ..++ ..+++ .++++||++|.|++++|+.++.........                                       
T Consensus       128 ~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~---------------------------------------  167 (435)
T PRK00093        128 AYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEEE---------------------------------------  167 (435)
T ss_pred             HHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCccccc---------------------------------------
Confidence            2333 34565 489999999999999999998733210000                                       


Q ss_pred             ccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCc-c-cccccCCccccccccceeeeeccee
Q psy18160        270 ANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQ-F-HEYQESTIGGECQSSHSISFSMPTK  347 (373)
Q Consensus       270 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~-f-~~~~~~Tig~~~~~~~~~~~~~~~~  347 (373)
                                            ......++++++|.+++|||||+++++... . ...+..|.         .+.....+
T Consensus       168 ----------------------~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt---------~~~~~~~~  216 (435)
T PRK00093        168 ----------------------DEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTT---------RDSIDTPF  216 (435)
T ss_pred             ----------------------cccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCce---------EEEEEEEE
Confidence                                  000124899999999999999999998653 2 23333232         23222333


Q ss_pred             eeCCeEEEEEehhhH
Q psy18160        348 NRLNNNVPITFVWVI  362 (373)
Q Consensus       348 ~v~~~~~~l~iw~~~  362 (373)
                      ..++..  +.|||++
T Consensus       217 ~~~~~~--~~lvDT~  229 (435)
T PRK00093        217 ERDGQK--YTLIDTA  229 (435)
T ss_pred             EECCee--EEEEECC
Confidence            445554  4679986

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.85  E-value=1.4e-20  Score=166.03  Aligned_cols=150  Identities=15%  Similarity=0.179  Sum_probs=117.7

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .++++++|.   |||||++++.++.+...  |.+...  ..+.+++  +.+.+||++|++++..++..+++++|++++|+
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vv   92 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS--EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLV   92 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence            378999997   99999999999877654  555432  3444443  67899999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH----
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE----  197 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~----  197 (373)
                      |++++.++.....++..+...                    ....++|+++|+||+|+...   ++.++..+...-    
T Consensus        93 D~~~~~~~~~~~~~l~~l~~~--------------------~~~~~~piliv~NK~Dl~~~---~~~~~i~~~l~l~~~~  149 (184)
T smart00178       93 DAYDKERFAESKRELDALLSD--------------------EELATVPFLILGNKIDAPYA---ASEDELRYALGLTNTT  149 (184)
T ss_pred             ECCcHHHHHHHHHHHHHHHcC--------------------hhhcCCCEEEEEeCccccCC---CCHHHHHHHcCCCccc
Confidence            999999999988887776541                    12357899999999998643   556655543311    


Q ss_pred             --------cCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        198 --------NGLLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       198 --------~~~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                              ....++++||++++|+++++++|...
T Consensus       150 ~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      150 GSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence                    12358999999999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.85  E-value=5.4e-20  Score=161.10  Aligned_cols=153  Identities=23%  Similarity=0.277  Sum_probs=123.4

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ....+++++|-   |||||++++..+.+...  |.|.+  ...+.+++  +.+.+||.+|++.++.+|+.|++++|++||
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf   87 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIF   87 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccccCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccceeEE
Confidence            46689999996   99999999998776655  76654  45666765  568999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH---
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE---  196 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~---  196 (373)
                      |+|.++.+.+.+..+.+..+...                    ....++|++|++||+|+.+.   .+.++......   
T Consensus        88 VvDssd~~~l~e~~~~L~~ll~~--------------------~~~~~~piLIl~NK~D~~~~---~~~~~i~~~l~l~~  144 (175)
T PF00025_consen   88 VVDSSDPERLQEAKEELKELLND--------------------PELKDIPILILANKQDLPDA---MSEEEIKEYLGLEK  144 (175)
T ss_dssp             EEETTGGGGHHHHHHHHHHHHTS--------------------GGGTTSEEEEEEESTTSTTS---STHHHHHHHTTGGG
T ss_pred             EEecccceeecccccchhhhcch--------------------hhcccceEEEEeccccccCc---chhhHHHhhhhhhh
Confidence            99999999999888777776551                    22357999999999998764   55555554332   


Q ss_pred             ---HcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        197 ---ENGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       197 ---~~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                         ...+.++.+||++|+|+.+.|+||.+++
T Consensus       145 l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  145 LKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             TTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             cccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence               2235689999999999999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.83  E-value=1.8e-19  Score=162.98  Aligned_cols=160  Identities=33%  Similarity=0.447  Sum_probs=129.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||+++|.++.|...   |++..+........+..+.+.+|||+|+++|+.++..|+++++++++||
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~   85 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY   85 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence            79999997   99999999999999976   8888887777777766899999999999999999999999999999999


Q ss_pred             ECCCH-hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------cccCHH
Q psy18160        122 DITNQ-DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RCVEYS  189 (373)
Q Consensus       122 D~~~~-~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------~~v~~~  189 (373)
                      |.++. .+++....|+..+..                     ......|+++|+||+|+....           +.....
T Consensus        86 d~~~~~~~~~~~~~~~~~l~~---------------------~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  144 (219)
T COG1100          86 DSTLRESSDELTEEWLEELRE---------------------LAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLL  144 (219)
T ss_pred             ecccchhhhHHHHHHHHHHHH---------------------hCCCCceEEEEecccccccchhHHHHHHhhhhcCcchh
Confidence            99994 455666789888877                     233579999999999997752           122333


Q ss_pred             HHHHHHHHc---CCeEEEEcCC--CCCCHHHHHHHHHHHcchhh
Q psy18160        190 EGEAYAEEN---GLLFMETSAK--TAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       190 e~~~~~~~~---~~~~~evSak--~~~gI~~lf~~L~~~i~~~~  228 (373)
                      .........   ...++++|++  ++.+|+++|..++..+.+..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         145 VLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             hhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhh
Confidence            333332222   3348999999  99999999999998886543

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.83  E-value=1.6e-19  Score=153.55  Aligned_cols=146  Identities=18%  Similarity=0.273  Sum_probs=113.6

Q ss_pred             EEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160         50 QIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI  123 (373)
Q Consensus        50 ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~  123 (373)
                      ++++|.   |||||++++.+.+|...   |++.++.  .+..++  +.+.+||++|++++..++..+++.+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            578887   99999999999988876   6665543  344443  7899999999999999999999999999999999


Q ss_pred             CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH-----HHc
Q psy18160        124 TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA-----EEN  198 (373)
Q Consensus       124 ~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~-----~~~  198 (373)
                      +++.++..+..|+..+...                    ....++|+++|+||+|+.+.   ...++.....     ...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~p~iiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~  134 (159)
T cd04159          78 ADRTALEAAKNELHDLLEK--------------------PSLEGIPLLVLGNKNDLPGA---LSVDELIEQMNLKSITDR  134 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcC--------------------hhhcCCCEEEEEeCccccCC---cCHHHHHHHhCcccccCC
Confidence            9999998888777766541                    12357899999999998653   1222222211     122


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~  222 (373)
                      ..+++++||+++.|++++|++|++
T Consensus       135 ~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         135 EVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             ceEEEEEEeccCCChHHHHHHHhh
Confidence            367899999999999999999864

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.83  E-value=2.1e-20  Score=157.43  Aligned_cols=130  Identities=15%  Similarity=0.114  Sum_probs=99.4

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCc-----ccccccchhhccCCcEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQ-----ERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~-----e~~~~l~~~~~~~ad~iil  119 (373)
                      +++++|.   |||||+++|.+..+... |++.++.       +     .+|||+|+     +.|..+.. .++++|++++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vil   68 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEILYKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVIAL   68 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccccccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEEE
Confidence            6888997   99999999999877544 6554432       1     58999998     23444433 4889999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++++.++.. ..|...                           ...|+++|+||+|+.+  +....+++.++++..+
T Consensus        69 v~d~~~~~s~~~-~~~~~~---------------------------~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~  118 (142)
T TIGR02528        69 VQSATDPESRFP-PGFASI---------------------------FVKPVIGLVTKIDLAE--ADVDIERAKELLETAG  118 (142)
T ss_pred             EecCCCCCcCCC-hhHHHh---------------------------ccCCeEEEEEeeccCC--cccCHHHHHHHHHHcC
Confidence            999999998754 233221                           0138999999999865  3356677788888877


Q ss_pred             C-eEEEEcCCCCCCHHHHHHHHH
Q psy18160        200 L-LFMETSAKTAMNVNEIFVEIA  221 (373)
Q Consensus       200 ~-~~~evSak~~~gI~~lf~~L~  221 (373)
                      . +++++||+++.|++++|++|+
T Consensus       119 ~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       119 AEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             CCcEEEEecCCCCCHHHHHHHHh
Confidence            6 799999999999999999875

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG1673|consensus

Probab=99.83  E-value=8.1e-20  Score=150.32  Aligned_cols=162  Identities=21%  Similarity=0.338  Sum_probs=138.0

Q ss_pred             CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCc
Q psy18160         42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQ  115 (373)
Q Consensus        42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad  115 (373)
                      ..+.-.+++.++|+   |||||+-+|.++++.+.   |.|+.+..+++.+.+..+.+.|||.+|++++..+.+....++-
T Consensus        15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv   94 (205)
T KOG1673|consen   15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV   94 (205)
T ss_pred             cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence            34556789999999   99999999999999866   9999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC----cccCHHHH
Q psy18160        116 AAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR----RCVEYSEG  191 (373)
Q Consensus       116 ~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~----~~v~~~e~  191 (373)
                      +++|+||++.+.++..+.+|+.+.+..                     ...-+ .++||+|.|+.-..    ...-..++
T Consensus        95 aIlFmFDLt~r~TLnSi~~WY~QAr~~---------------------NktAi-PilvGTKyD~fi~lp~e~Q~~I~~qa  152 (205)
T KOG1673|consen   95 AILFMFDLTRRSTLNSIKEWYRQARGL---------------------NKTAI-PILVGTKYDLFIDLPPELQETISRQA  152 (205)
T ss_pred             EEEEEEecCchHHHHHHHHHHHHHhcc---------------------CCccc-eEEeccchHhhhcCCHHHHHHHHHHH
Confidence            999999999999999999999998772                     22334 46799999974320    11112346


Q ss_pred             HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +.+|+.++.+.|.+|+.++.||+.+|.-+..++.
T Consensus       153 r~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklF  186 (205)
T KOG1673|consen  153 RKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLF  186 (205)
T ss_pred             HHHHHHhCCcEEEeeccccccHHHHHHHHHHHHh
Confidence            7788889999999999999999999998877665

>KOG0073|consensus

Probab=99.82  E-value=2.4e-19  Score=149.06  Aligned_cols=154  Identities=18%  Similarity=0.204  Sum_probs=125.5

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..+++.++|-   ||||++++|.+......  |.|  |..+++.+++  +.+++||.+||...++.|+.||..+||+|+|
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglIwv   90 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLIWV   90 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCCccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence            3578999995   99999999998875544  555  5567777755  7799999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH------HHHH
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE------GEAY  194 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e------~~~~  194 (373)
                      +|.+|+..+++...-+..+..                    .......|++|++||.|+...   +..++      ..++
T Consensus        91 vDssD~~r~~e~~~~L~~lL~--------------------eerlaG~~~Lvlank~dl~~~---l~~~~i~~~~~L~~l  147 (185)
T KOG0073|consen   91 VDSSDRMRMQECKQELTELLV--------------------EERLAGAPLLVLANKQDLPGA---LSLEEISKALDLEEL  147 (185)
T ss_pred             EECchHHHHHHHHHHHHHHHh--------------------hhhhcCCceEEEEecCcCccc---cCHHHHHHhhCHHHh
Confidence            999999999988766665543                    022346899999999999754   33332      3456


Q ss_pred             HHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       195 ~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ++...++.+-|||.+|+++.+.|.||+..+..
T Consensus       148 ~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  148 AKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             ccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence            67788999999999999999999999988865

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.82  E-value=2.3e-19  Score=155.12  Aligned_cols=147  Identities=17%  Similarity=0.083  Sum_probs=102.5

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc---------chhhc
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL---------APMYY  111 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l---------~~~~~  111 (373)
                      +++++|.   |||||+++|.+..+...     |.+..  ...+..  +.+.+.+|||+|+......         .....
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   77 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLF--VGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALA   77 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCccccee--EEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHH
Confidence            5788887   99999999999887543     22222  122222  3468999999998432110         00111


Q ss_pred             cCCcEEEEEEECCCHhhH--HHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160        112 RNAQAAIIVYDITNQDTF--GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS  189 (373)
Q Consensus       112 ~~ad~iilv~D~~~~~Sf--~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~  189 (373)
                      ..+|++++|+|++++.++  +....|+..+..                     . ..+.|+++|+||+|+... +.+  .
T Consensus        78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~---------------------~-~~~~pvilv~NK~Dl~~~-~~~--~  132 (168)
T cd01897          78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKP---------------------L-FKNKPVIVVLNKIDLLTF-EDL--S  132 (168)
T ss_pred             hccCcEEEEEeCCcccccchHHHHHHHHHHHh---------------------h-cCcCCeEEEEEccccCch-hhH--H
Confidence            236899999999987654  555667776654                     1 247899999999999654 222  2


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       190 e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      +..++++..+.+++++||++|.|++++|+++.+.+
T Consensus       133 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         133 EIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             HHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence            24556666678899999999999999999998765

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=99.82  E-value=3.8e-19  Score=154.67  Aligned_cols=147  Identities=21%  Similarity=0.212  Sum_probs=114.4

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..++++++|.   |||||++++.+..+...  |.|.++  ..+..++  ..+.+||++|+.++...+..+++++|++++|
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v   88 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYV   88 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence            3678999997   99999999999877544  666443  4555554  5688999999999988889999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      +|+++..++.....|+..+...                    ....++|+++++||+|+...   ...++   +.+..++
T Consensus        89 ~D~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~p~ivv~nK~D~~~~---~~~~~---i~~~l~~  142 (173)
T cd04155          89 IDSADKKRLEEAGAELVELLEE--------------------EKLAGVPVLVFANKQDLATA---APAEE---IAEALNL  142 (173)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhC--------------------hhhcCCCEEEEEECCCCccC---CCHHH---HHHHcCC
Confidence            9999999998888777665441                    12347899999999998653   22222   3333332


Q ss_pred             --------eEEEEcCCCCCCHHHHHHHHHH
Q psy18160        201 --------LFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       201 --------~~~evSak~~~gI~~lf~~L~~  222 (373)
                              +++++||++|+|++++|++|++
T Consensus       143 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         143 HDLRDRTWHIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             cccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence                    4789999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG0070|consensus

Probab=99.80  E-value=1.3e-18  Score=148.48  Aligned_cols=157  Identities=20%  Similarity=0.197  Sum_probs=127.0

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      .....++|+++|=   ||||+++++..+++...  |+|..  ...+++.  .+.|.+||.+||++++.+|+.|+++.+++
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfn--VE~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFN--VETVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccc--eeEEEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence            3456688999994   99999999999988877  88754  4566675  57899999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160        118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE  197 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~  197 (373)
                      |||+|.+|++.+.++.+-+..+...                    ....+.|+++.+||.|++..   .+..++.+....
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~--------------------~~l~~~~llv~aNKqD~~~a---ls~~ei~~~L~l  145 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAE--------------------PELRNAPLLVFANKQDLPGA---LSAAEITNKLGL  145 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcC--------------------cccCCceEEEEechhhcccc---CCHHHHHhHhhh
Confidence            9999999999999988666655541                    23468999999999999875   455554443322


Q ss_pred             -----cCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        198 -----NGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       198 -----~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                           ....+..++|.+|+|+.|.+++|...+..
T Consensus       146 ~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  146 HSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             hccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence                 23457889999999999999999988763

>cd01898 Obg Obg subfamily

Probab=99.80  E-value=9.6e-19  Score=151.45  Aligned_cols=151  Identities=17%  Similarity=0.100  Sum_probs=106.8

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcc----cccccchhhcc---C
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQE----RYHTLAPMYYR---N  113 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e----~~~~l~~~~~~---~  113 (373)
                      .++++|.   |||||++++.+.+....     |....  ...+.+++ ...+.+|||||+.    .+..+...+++   .
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~--~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   78 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPN--LGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIER   78 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCc--ceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence            4788887   99999999997654322     22211  12233333 2478999999973    22334444444   5


Q ss_pred             CcEEEEEEECCCH-hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH
Q psy18160        114 AQAAIIVYDITNQ-DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE  192 (373)
Q Consensus       114 ad~iilv~D~~~~-~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~  192 (373)
                      +|++++|+|++++ .+++.+..|.+.+....                   ......|+++|+||+|+.+. . ...+...
T Consensus        79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~-------------------~~~~~~p~ivv~NK~Dl~~~-~-~~~~~~~  137 (170)
T cd01898          79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYN-------------------PELLEKPRIVVLNKIDLLDE-E-ELFELLK  137 (170)
T ss_pred             CCEEEEEEecCCCCCHHHHHHHHHHHHHHhC-------------------ccccccccEEEEEchhcCCc-h-hhHHHHH
Confidence            9999999999999 79999999988876620                   11246899999999998664 2 2233444


Q ss_pred             HHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        193 AYAEEN-GLLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       193 ~~~~~~-~~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                      .+.... +.+++++||+++.|++++|++|++.
T Consensus       138 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         138 ELLKELWGKPVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             HHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence            555553 6789999999999999999998864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.80  E-value=3.1e-18  Score=144.74  Aligned_cols=150  Identities=25%  Similarity=0.370  Sum_probs=119.8

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ++++++|.   |||||++++....+...   +.+.++....+.+++..+.+.+||++|++++..++..+++.++++++++
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~   81 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF   81 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence            58899997   99999999999985544   6667776666778887788999999999999999999999999999999


Q ss_pred             ECCCH-hhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        122 DITNQ-DTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       122 D~~~~-~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |+... .++.... .|+..+...                     ...+.|+++|+||+|+... + ...+....+.....
T Consensus        82 d~~~~v~~~~~~~~~~~~~~~~~---------------------~~~~~p~ivv~nK~D~~~~-~-~~~~~~~~~~~~~~  138 (161)
T TIGR00231        82 DIVILVLDVEEILEKQTKEIIHH---------------------AESNVPIILVGNKIDLRDA-K-LKTHVAFLFAKLNG  138 (161)
T ss_pred             EEeeeehhhhhHhHHHHHHHHHh---------------------cccCCcEEEEEEcccCCcc-h-hhHHHHHHHhhccC
Confidence            99887 7777765 676666551                     2227899999999999664 2 33333334444445


Q ss_pred             CeEEEEcCCCCCCHHHHHHHH
Q psy18160        200 LLFMETSAKTAMNVNEIFVEI  220 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L  220 (373)
                      .+++++||+++.|++++|+.|
T Consensus       139 ~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231       139 EPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             CceEEeecCCCCCHHHHHHHh
Confidence            789999999999999999886

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG0096|consensus

Probab=99.80  E-value=2.1e-19  Score=152.88  Aligned_cols=155  Identities=28%  Similarity=0.439  Sum_probs=129.0

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..+.+++|+   |||+++.|.+.++|...   |+|+....-...-+...+++..|||+|+|.+..+...||-.+.+++++
T Consensus        10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim   89 (216)
T KOG0096|consen   10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM   89 (216)
T ss_pred             eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence            344555554   99999999999999987   999887654444454569999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++.+-++.++.+|...+.+                      ...++||+++|||.|....  ++. .+...+.+..++
T Consensus        90 FdVtsr~t~~n~~rwhrd~~r----------------------v~~NiPiv~cGNKvDi~~r--~~k-~k~v~~~rkknl  144 (216)
T KOG0096|consen   90 FDVTSRFTYKNVPRWHRDLVR----------------------VRENIPIVLCGNKVDIKAR--KVK-AKPVSFHRKKNL  144 (216)
T ss_pred             eeeeehhhhhcchHHHHHHHH----------------------HhcCCCeeeeccceecccc--ccc-cccceeeecccc
Confidence            999999999999999998877                      3467999999999998663  222 223345566789


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .|+++||+++.|.+..|.++++.+..
T Consensus       145 ~y~~iSaksn~NfekPFl~LarKl~G  170 (216)
T KOG0096|consen  145 QYYEISAKSNYNFERPFLWLARKLTG  170 (216)
T ss_pred             eeEEeecccccccccchHHHhhhhcC
Confidence            99999999999999999999998873

>cd04171 SelB SelB subfamily

Probab=99.80  E-value=1.1e-18  Score=149.91  Aligned_cols=144  Identities=13%  Similarity=0.022  Sum_probs=99.3

Q ss_pred             EEEEEcC---ChhHHHHHhhhC---cCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINV---VFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~---~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      -++++|.   |||||+++|++.   .+...     |++..+  ..+.+++ ...+.+|||+|+++|......+++++|++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~i   78 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGF--AYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLV   78 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeee--EEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEE
Confidence            4677887   999999999963   33321     444333  3455542 35789999999999877677788999999


Q ss_pred             EEEEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc-ccCHHHHHH
Q psy18160        118 IIVYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR-CVEYSEGEA  193 (373)
Q Consensus       118 ilv~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~-~v~~~e~~~  193 (373)
                      ++|+|+++   +.+++.+.    .+..                     .  ...|+++|+||+|+....+ ....++..+
T Consensus        79 i~V~d~~~~~~~~~~~~~~----~~~~---------------------~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~  131 (164)
T cd04171          79 LLVVAADEGIMPQTREHLE----ILEL---------------------L--GIKRGLVVLTKADLVDEDWLELVEEEIRE  131 (164)
T ss_pred             EEEEECCCCccHhHHHHHH----HHHH---------------------h--CCCcEEEEEECccccCHHHHHHHHHHHHH
Confidence            99999987   33433322    2222                     1  1248999999999965311 112234444


Q ss_pred             HHHH---cCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        194 YAEE---NGLLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       194 ~~~~---~~~~~~evSak~~~gI~~lf~~L~~  222 (373)
                      +.+.   .+.+++++||+++.|++++|+.+.+
T Consensus       132 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         132 LLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             HHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            4444   4678999999999999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01878 HflX HflX subfamily

Probab=99.79  E-value=7.2e-19  Score=157.49  Aligned_cols=151  Identities=20%  Similarity=0.109  Sum_probs=108.3

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccc---------cccchh
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERY---------HTLAPM  109 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~---------~~l~~~  109 (373)
                      ...++++++|.   |||||++++++..+...   ....+.....+.+++. ..+.+|||+|..+.         .... .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            44578999997   99999999999875432   1112233344555543 36889999997321         1111 1


Q ss_pred             hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160        110 YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS  189 (373)
Q Consensus       110 ~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~  189 (373)
                      .+.++|++++|+|++++.++..+..|...+..                     ....++|+++|+||+|+... ..    
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~---------------------~~~~~~~viiV~NK~Dl~~~-~~----  170 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKE---------------------LGAEDIPMILVLNKIDLLDD-EE----  170 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHH---------------------cCcCCCCEEEEEEccccCCh-HH----
Confidence            36789999999999999988888777766655                     23356899999999998654 11    


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       190 e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                       ...++...+.+++++||+++.|++++|++|...+
T Consensus       171 -~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         171 -LEERLEAGRPDAVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             -HHHHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence             1144455567899999999999999999997653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG3883|consensus

Probab=99.79  E-value=5.8e-18  Score=139.12  Aligned_cols=159  Identities=18%  Similarity=0.252  Sum_probs=132.4

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEE-CCEEEEEEEEeCCCcccc-cccchhhccCCc
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCL-DDVTIRFEIWDTAGQERY-HTLAPMYYRNAQ  115 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~-~~l~~~~~~~ad  115 (373)
                      ...++++.|.   |||+++.+++-++..+.     |++.. +...++- +|-+-.+.|+||+|...+ ..+-+.|+.-+|
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDi-Y~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDI-YVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhh-eeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            3467888887   99999999998877665     77644 3445544 344557899999998777 567788999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH
Q psy18160        116 AAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA  195 (373)
Q Consensus       116 ~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~  195 (373)
                      ++++|||..|++||+.++.+..+|.+.                    .....+||++++||+|+.++ +.++.+-+..||
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~--------------------KdKKEvpiVVLaN~rdr~~p-~~vd~d~A~~Wa  145 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKH--------------------KDKKEVPIVVLANKRDRAEP-REVDMDVAQIWA  145 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhc--------------------cccccccEEEEechhhcccc-hhcCHHHHHHHH
Confidence            999999999999999988666666653                    34568999999999999866 889999999999


Q ss_pred             HHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       196 ~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      +.-.+..++++|++...+-+.|..|+..+.+
T Consensus       146 ~rEkvkl~eVta~dR~sL~epf~~l~~rl~~  176 (198)
T KOG3883|consen  146 KREKVKLWEVTAMDRPSLYEPFTYLASRLHQ  176 (198)
T ss_pred             hhhheeEEEEEeccchhhhhHHHHHHHhccC
Confidence            9999999999999999999999999998874

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.79  E-value=1.6e-18  Score=166.98  Aligned_cols=180  Identities=16%  Similarity=0.119  Sum_probs=126.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeE--EEEEEEECCEEEEEEEEeCCCccccc---------ccchhhc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAF--ITQTVCLDDVTIRFEIWDTAGQERYH---------TLAPMYY  111 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~--~~~~i~~~~~~v~l~i~Dt~G~e~~~---------~l~~~~~  111 (373)
                      ..++++|.   |||||+||+++.+.+..  +.|++.  .....++.+..  |.++||+|.+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            35777886   99999999999998877  555543  33455565544  8899999987433         1233457


Q ss_pred             cCCcEEEEEEECCCHhhHH--HHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160        112 RNAQAAIIVYDITNQDTFG--RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS  189 (373)
Q Consensus       112 ~~ad~iilv~D~~~~~Sf~--~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~  189 (373)
                      ..||++|||+|....-+-.  .+.+|+.   .                        .+.|++||+||+|-...     .+
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~Lr---~------------------------~~kpviLvvNK~D~~~~-----e~  129 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKILR---R------------------------SKKPVILVVNKIDNLKA-----EE  129 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHHH---h------------------------cCCCEEEEEEcccCchh-----hh
Confidence            7999999999997744332  2333432   2                        46899999999997532     22


Q ss_pred             HHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccceee
Q psy18160        190 EGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILT  268 (373)
Q Consensus       190 e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~~~  268 (373)
                      .+.+|+ .+|+ +.+.+||.+|.|+.+|.+++++.+. ..+.....                                  
T Consensus       130 ~~~efy-slG~g~~~~ISA~Hg~Gi~dLld~v~~~l~-~~e~~~~~----------------------------------  173 (444)
T COG1160         130 LAYEFY-SLGFGEPVPISAEHGRGIGDLLDAVLELLP-PDEEEEEE----------------------------------  173 (444)
T ss_pred             hHHHHH-hcCCCCceEeehhhccCHHHHHHHHHhhcC-Cccccccc----------------------------------
Confidence            233343 4554 6899999999999999999998874 11110000                                  


Q ss_pred             cccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCc
Q psy18160        269 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQ  321 (373)
Q Consensus       269 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~  321 (373)
                                              .....+|+.++|.+++|||+|+|++++.+
T Consensus       174 ------------------------~~~~~ikiaiiGrPNvGKSsLiN~ilgee  202 (444)
T COG1160         174 ------------------------EETDPIKIAIIGRPNVGKSSLINAILGEE  202 (444)
T ss_pred             ------------------------ccCCceEEEEEeCCCCCchHHHHHhccCc
Confidence                                    00124899999999999999999999764

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.79  E-value=1e-18  Score=155.42  Aligned_cols=141  Identities=12%  Similarity=0.084  Sum_probs=102.8

Q ss_pred             EEEEEcC---ChhHHHHHhhh--CcCcCc---------------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccch
Q psy18160         49 AQIWLKD---RVDCMTQIVIN--VVFYPY---------------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAP  108 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~--~~~~~~---------------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~  108 (373)
                      .++++|.   |||||+++|+.  +.|...               +.|.++..+...++.+.+.+.+|||+|+++|..++.
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~   83 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE   83 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence            6788887   99999999997  444321               356666666666666678899999999999999999


Q ss_pred             hhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160        109 MYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY  188 (373)
Q Consensus       109 ~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~  188 (373)
                      .+++++|++++|||+++.. +.....|+..+..                        .++|+++|+||+|+.........
T Consensus        84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~------------------------~~~p~iiv~NK~Dl~~~~~~~~~  138 (194)
T cd01891          84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE------------------------LGLKPIVVINKIDRPDARPEEVV  138 (194)
T ss_pred             HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH------------------------cCCCEEEEEECCCCCCCCHHHHH
Confidence            9999999999999998742 2333334443332                        36799999999999654222234


Q ss_pred             HHHHHHHHH-------cCCeEEEEcCCCCCCHH
Q psy18160        189 SEGEAYAEE-------NGLLFMETSAKTAMNVN  214 (373)
Q Consensus       189 ~e~~~~~~~-------~~~~~~evSak~~~gI~  214 (373)
                      +++.+++..       .+++++++||++|.|+.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~  171 (194)
T cd01891         139 DEVFDLFIELGATEEQLDFPVLYASAKNGWASL  171 (194)
T ss_pred             HHHHHHHHHhCCccccCccCEEEeehhcccccc
Confidence            455555432       36789999999997763

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK04213 GTP-binding protein; Provisional

Probab=99.79  E-value=6.1e-19  Score=157.54  Aligned_cols=149  Identities=20%  Similarity=0.149  Sum_probs=102.9

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCC-----------cccccccchhh
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAG-----------QERYHTLAPMY  110 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G-----------~e~~~~l~~~~  110 (373)
                      ...+++++|.   |||||++++.+..+... ..|.++....+.++    .+.+|||+|           +++++.++..+
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY   83 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence            4578899997   99999999999887654 55666555555444    488999999           57777777677


Q ss_pred             cc-C---CcEEEEEEECCCHhhHHHH-HHHHH--------HHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCC
Q psy18160        111 YR-N---AQAAIIVYDITNQDTFGRA-KSWVK--------ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKA  177 (373)
Q Consensus       111 ~~-~---ad~iilv~D~~~~~Sf~~i-~~~l~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~  177 (373)
                      ++ +   ++++++|+|.++.   ..+ .+|..        ++..                 .   ....++|+++|+||+
T Consensus        84 ~~~~~~~~~~vi~v~d~~~~---~~~~~~~~~~~~~~~~~~l~~-----------------~---~~~~~~p~iiv~NK~  140 (201)
T PRK04213         84 IEDNADRILAAVLVVDGKSF---IEIIERWEGRGEIPIDVEMFD-----------------F---LRELGIPPIVAVNKM  140 (201)
T ss_pred             HHhhhhhheEEEEEEeCccc---cccccccccCCCcHHHHHHHH-----------------H---HHHcCCCeEEEEECc
Confidence            64 3   4677777776542   222 12211        0111                 0   011478999999999


Q ss_pred             CCCCCCcccCHHHHHHHHHHcCC---------eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        178 DLPTSRRCVEYSEGEAYAEENGL---------LFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       178 Dl~~~~~~v~~~e~~~~~~~~~~---------~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      |+.+. +   .+...++++.+++         +++++||++| ||+++|++|++.+..
T Consensus       141 Dl~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        141 DKIKN-R---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             cccCc-H---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            98653 1   3455666666664         4899999999 999999999987753

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.77  E-value=1.1e-17  Score=142.79  Aligned_cols=138  Identities=17%  Similarity=0.092  Sum_probs=102.4

Q ss_pred             ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc------cchhhcc--CCcEEEEEEECC
Q psy18160         56 RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT------LAPMYYR--NAQAAIIVYDIT  124 (373)
Q Consensus        56 GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~------l~~~~~~--~ad~iilv~D~~  124 (373)
                      |||||++++++..+...   +.+.+.....+.+++  ..+.+|||||++.+..      ++..++.  ++|++++|+|++
T Consensus         8 GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~   85 (158)
T cd01879           8 GKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDAT   85 (158)
T ss_pred             CHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCC
Confidence            99999999998864443   333444456677765  4689999999987765      3566665  999999999998


Q ss_pred             CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEE
Q psy18160        125 NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFME  204 (373)
Q Consensus       125 ~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~e  204 (373)
                      ++++..   .|...+..                        .++|+++|+||+|+.+. ..+.. +...+++.++.++++
T Consensus        86 ~~~~~~---~~~~~~~~------------------------~~~~~iiv~NK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~  136 (158)
T cd01879          86 NLERNL---YLTLQLLE------------------------LGLPVVVALNMIDEAEK-RGIKI-DLDKLSELLGVPVVP  136 (158)
T ss_pred             cchhHH---HHHHHHHH------------------------cCCCEEEEEehhhhccc-ccchh-hHHHHHHhhCCCeEE
Confidence            765432   33333333                        36799999999999754 22322 345677778899999


Q ss_pred             EcCCCCCCHHHHHHHHHHHc
Q psy18160        205 TSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       205 vSak~~~gI~~lf~~L~~~i  224 (373)
                      +||+++.|++++|+.|.+.+
T Consensus       137 iSa~~~~~~~~l~~~l~~~~  156 (158)
T cd01879         137 TSARKGEGIDELKDAIAELA  156 (158)
T ss_pred             EEccCCCCHHHHHHHHHHHh
Confidence            99999999999999988753

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG4423|consensus

Probab=99.76  E-value=5.6e-20  Score=155.74  Aligned_cols=166  Identities=27%  Similarity=0.416  Sum_probs=138.2

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCE-EEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDV-TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~-~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .++.++|.   |||+++.|+....|+..   |||++|..+....+++ .+++++||.+||++|..+...||+.+++.++|
T Consensus        26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV  105 (229)
T KOG4423|consen   26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV  105 (229)
T ss_pred             hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence            45666666   99999999999999887   9999998888888764 56899999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||+++..+|+...+|.+++...                 +.-.....+|+++.+||||....-.........++.+++|+
T Consensus       106 fdvt~s~tfe~~skwkqdldsk-----------------~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf  168 (229)
T KOG4423|consen  106 FDVTRSLTFEPVSKWKQDLDSK-----------------LQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGF  168 (229)
T ss_pred             EEccccccccHHHHHHHhccCc-----------------ccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCc
Confidence            9999999999999999887541                 11134567899999999998654122224566778888887


Q ss_pred             -eEEEEcCCCCCCHHHHHHHHHHHcchhhcc
Q psy18160        201 -LFMETSAKTAMNVNEIFVEIAKKLPKKEVN  230 (373)
Q Consensus       201 -~~~evSak~~~gI~~lf~~L~~~i~~~~~~  230 (373)
                       .++|+|+|.+.|++|+-+.|++.+.-+...
T Consensus       169 ~gwtets~Kenkni~Ea~r~lVe~~lvnd~q  199 (229)
T KOG4423|consen  169 EGWTETSAKENKNIPEAQRELVEKILVNDEQ  199 (229)
T ss_pred             cceeeeccccccChhHHHHHHHHHHHhhccC
Confidence             499999999999999999999988766533

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.76  E-value=6.2e-18  Score=163.29  Aligned_cols=188  Identities=20%  Similarity=0.152  Sum_probs=121.8

Q ss_pred             Cccccchhhhhh---hhhhhhhhhhhccCCCCcccc-c-cCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ce
Q psy18160          6 GTCGSTLQTIEY---ALTVRVLKLKTQIPKGNWFSM-M-SGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LF   74 (373)
Q Consensus         6 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Ti   74 (373)
                      |+.|+.+..++.   .+..++..++..+........ . ..+.....++++++|.   |||||+|+|++..+...   ..
T Consensus       143 ~~~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~t  222 (351)
T TIGR03156       143 GTRGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFA  222 (351)
T ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCcc
Confidence            345555543333   455555555554433221111 1 1222345578999997   99999999999875432   11


Q ss_pred             eeeEEEEEEEECCEEEEEEEEeCCCcc---------cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCC
Q psy18160         75 SAAFITQTVCLDDVTIRFEIWDTAGQE---------RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPP  145 (373)
Q Consensus        75 g~~~~~~~i~~~~~~v~l~i~Dt~G~e---------~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~  145 (373)
                      ..++..+.+.+++. ..+.+|||+|..         .|.... ..+++||++++|+|++++.+++.+..|...+..    
T Consensus       223 T~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~----  296 (351)
T TIGR03156       223 TLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEE----  296 (351)
T ss_pred             ccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHH----
Confidence            23445567777432 368899999972         222222 247899999999999999888887766665554    


Q ss_pred             CCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        146 NIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                                       ....+.|+++|+||+|+.+. .     +...+. ....+++++||++|.|++++++.|.+.
T Consensus       297 -----------------l~~~~~piIlV~NK~Dl~~~-~-----~v~~~~-~~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       297 -----------------LGAEDIPQLLVYNKIDLLDE-P-----RIERLE-EGYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             -----------------hccCCCCEEEEEEeecCCCh-H-----hHHHHH-hCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence                             22347899999999998643 1     111121 223468999999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.76  E-value=1.2e-17  Score=144.13  Aligned_cols=151  Identities=15%  Similarity=0.065  Sum_probs=102.1

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC-CEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~-~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .++++|.   |||||+++|...++...   ++..++....+..+ +....+.+|||+|++.|..++..+++.+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            3678887   99999999999988765   22223322333333 23567899999999999988888999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH----H
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE----E  197 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~----~  197 (373)
                      |+++....+... .+..+..                        .++|+++|+||+|+.........++...+..    .
T Consensus        82 d~~~~~~~~~~~-~~~~~~~------------------------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  136 (168)
T cd01887          82 AADDGVMPQTIE-AIKLAKA------------------------ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDE  136 (168)
T ss_pred             ECCCCccHHHHH-HHHHHHH------------------------cCCCEEEEEEceecccccHHHHHHHHHHhhcccccc
Confidence            998743211111 1122222                        3679999999999864311000111111111    1


Q ss_pred             --cCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        198 --NGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       198 --~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                        ..++++++||+++.|+++++++|.+..
T Consensus       137 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (168)
T cd01887         137 WGGDVQIVPTSAKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             ccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence              135799999999999999999998654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.74  E-value=6.7e-17  Score=134.92  Aligned_cols=144  Identities=38%  Similarity=0.633  Sum_probs=113.0

Q ss_pred             ChhHHHHHhhhCcC-cCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHH
Q psy18160         56 RVDCMTQIVINVVF-YPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGR  131 (373)
Q Consensus        56 GKTsLl~rl~~~~~-~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~  131 (373)
                      |||||++++.+... ...   |. .++........+....+.+||++|+..+......+++.+|++++|+|++++.++..
T Consensus         8 GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~   86 (157)
T cd00882           8 GKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFEN   86 (157)
T ss_pred             cHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHH
Confidence            99999999999877 232   44 67777777777778899999999999888888888999999999999999999998


Q ss_pred             HHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH-HHHHHHHcCCeEEEEcCCCC
Q psy18160        132 AKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE-GEAYAEENGLLFMETSAKTA  210 (373)
Q Consensus       132 i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e-~~~~~~~~~~~~~evSak~~  210 (373)
                      ...|......                    .......|+++|+||+|+... ....... ...+......+++++|++++
T Consensus        87 ~~~~~~~~~~--------------------~~~~~~~~~ivv~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~  145 (157)
T cd00882          87 VKEWLLLILI--------------------NKEGENIPIILVGNKIDLPEE-RVVSEEELAEQLAKELGVPYFETSAKTG  145 (157)
T ss_pred             HHHHHHHHHH--------------------hhccCCCcEEEEEeccccccc-cchHHHHHHHHHHhhcCCcEEEEecCCC
Confidence            8877322221                    034568999999999998754 2122211 34455566789999999999


Q ss_pred             CCHHHHHHHHH
Q psy18160        211 MNVNEIFVEIA  221 (373)
Q Consensus       211 ~gI~~lf~~L~  221 (373)
                      .|+++++++|.
T Consensus       146 ~~i~~~~~~l~  156 (157)
T cd00882         146 ENVEELFEELA  156 (157)
T ss_pred             CChHHHHHHHh
Confidence            99999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK11058 GTPase HflX; Provisional

Probab=99.74  E-value=2.2e-17  Score=163.11  Aligned_cols=192  Identities=16%  Similarity=0.128  Sum_probs=124.9

Q ss_pred             Cccccchhhhhh---hhhhhhhhhhhccCCCCcccc-cc-CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ce
Q psy18160          6 GTCGSTLQTIEY---ALTVRVLKLKTQIPKGNWFSM-MS-GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LF   74 (373)
Q Consensus         6 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Ti   74 (373)
                      |+.|+++..+|.   .+..+...++..+........ .. .+..+...+++++|.   |||||+|++++.++...   ..
T Consensus       151 g~~g~ge~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~t  230 (426)
T PRK11058        151 GLRGPGETQLETDRRLLRNRIVQILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFA  230 (426)
T ss_pred             CCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCC
Confidence            788999999987   344444444444433211111 11 122234467888887   99999999998775432   12


Q ss_pred             eeeEEEEEEEECCEEEEEEEEeCCCcccc--cccchh------hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCC
Q psy18160         75 SAAFITQTVCLDDVTIRFEIWDTAGQERY--HTLAPM------YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPN  146 (373)
Q Consensus        75 g~~~~~~~i~~~~~~v~l~i~Dt~G~e~~--~~l~~~------~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~  146 (373)
                      +.+.....+.+++. ..+.+|||+|..+.  ..++..      .+++||++++|+|++++.+++.+..|...+..     
T Consensus       231 Tld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~e-----  304 (426)
T PRK11058        231 TLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEE-----  304 (426)
T ss_pred             CcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHH-----
Confidence            23344455666543 24679999998442  222222      36899999999999999888887655554444     


Q ss_pred             CCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        147 IDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL-FMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~-~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                                      ....++|+++|+||+|+... . ..  .. . ....+.+ ++++||++|.|+++++++|.+.+.
T Consensus       305 ----------------l~~~~~pvIiV~NKiDL~~~-~-~~--~~-~-~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~  362 (426)
T PRK11058        305 ----------------IDAHEIPTLLVMNKIDMLDD-F-EP--RI-D-RDEENKPIRVWLSAQTGAGIPLLFQALTERLS  362 (426)
T ss_pred             ----------------hccCCCCEEEEEEcccCCCc-h-hH--HH-H-HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence                            12247899999999998642 1 11  11 1 1123555 488999999999999999998875

>KOG0075|consensus

Probab=99.74  E-value=8.6e-18  Score=137.23  Aligned_cols=147  Identities=18%  Similarity=0.286  Sum_probs=114.8

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      +.+.++|=   |||||+|..+.+.|.+.   |.|..    ..++....+.+.+||.+||.+|+++|..|+++++++++|+
T Consensus        21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn----mrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V   96 (186)
T KOG0075|consen   21 MELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN----MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV   96 (186)
T ss_pred             eeEEEEeeccCCcceEEEEEeeccchhhhcccccce----eEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence            45666663   99999999999999988   77644    3355666788999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC--
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG--  199 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~--  199 (373)
                      |..+++......+-+..+..                    +.....+|++++|||.|+++.   .+..   ++...+|  
T Consensus        97 Daad~~k~~~sr~EL~~LL~--------------------k~~l~gip~LVLGnK~d~~~A---L~~~---~li~rmgL~  150 (186)
T KOG0075|consen   97 DAADPDKLEASRSELHDLLD--------------------KPSLTGIPLLVLGNKIDLPGA---LSKI---ALIERMGLS  150 (186)
T ss_pred             ecCCcccchhhHHHHHHHhc--------------------chhhcCCcEEEecccccCccc---ccHH---HHHHHhCcc
Confidence            99998877666543333322                    134568999999999999875   3332   2333444  


Q ss_pred             ------CeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        200 ------LLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       200 ------~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                            +..|.+|+++..||+.+.+||.+.-
T Consensus       151 sitdREvcC~siScke~~Nid~~~~Wli~hs  181 (186)
T KOG0075|consen  151 SITDREVCCFSISCKEKVNIDITLDWLIEHS  181 (186)
T ss_pred             ccccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence                  3589999999999999999998653

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.74  E-value=4.4e-17  Score=156.23  Aligned_cols=155  Identities=16%  Similarity=0.035  Sum_probs=111.1

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCccc----ccccchh---hccC
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQER----YHTLAPM---YYRN  113 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~----~~~l~~~---~~~~  113 (373)
                      .+.++|-   |||||++++++.+....     |+....  ..+.++ +...+.+||+||.-+    ...+...   +++.
T Consensus       160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~--G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNL--GVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceE--EEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            3667775   99999999998653322     443332  334442 224588999999742    2234444   3557


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160        114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA  193 (373)
Q Consensus       114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~  193 (373)
                      ++++++|+|+++.++++.+..|..++..+.                   ....+.|++||+||+|+.+. ..+..++...
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~-------------------~~L~~kp~IIV~NKiDL~~~-~~~~~~~~~~  296 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYS-------------------PELADKPRILVLNKIDLLDE-EEEREKRAAL  296 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhh-------------------hhcccCCeEEEEECcccCCc-hhHHHHHHHH
Confidence            999999999998888999999988887621                   11246899999999999754 3233344555


Q ss_pred             HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       194 ~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      +++..+.+++++||++++||+++|++|.+.+.+
T Consensus       297 ~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        297 ELAALGGPVFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             HHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            566667899999999999999999999987753

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.73  E-value=5e-17  Score=166.85  Aligned_cols=151  Identities=19%  Similarity=0.190  Sum_probs=114.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCc-------CcCc---------ceeeeEEEEEEEE-----CCEEEEEEEEeCCCcccc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVV-------FYPY---------LFSAAFITQTVCL-----DDVTIRFEIWDTAGQERY  103 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~-------~~~~---------Tig~~~~~~~i~~-----~~~~v~l~i~Dt~G~e~~  103 (373)
                      -.++++|.   |||||++||+...       +...         +.|.++..+.+.+     ++..+.+.||||||+++|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            35677776   9999999998742       1111         3466665555443     567789999999999999


Q ss_pred             cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC
Q psy18160        104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR  183 (373)
Q Consensus       104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~  183 (373)
                      ...+..+++.+|++|+|+|+++..+++....|...+.                         .++|+++|+||+|+... 
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-------------------------~~ipiIiViNKiDl~~~-  137 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-------------------------NDLEIIPVINKIDLPSA-  137 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-------------------------cCCCEEEEEECcCCCcc-
Confidence            9999999999999999999999777776665544322                         35799999999998643 


Q ss_pred             cccCHHHHHHHHHHcCC---eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        184 RCVEYSEGEAYAEENGL---LFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       184 ~~v~~~e~~~~~~~~~~---~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                        ...+...++++.+++   +++++||++|.||+++|+.|++.+..
T Consensus       138 --~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       138 --DPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             --CHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence              112233455666665   48999999999999999999988753

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.73  E-value=3.9e-17  Score=133.21  Aligned_cols=111  Identities=23%  Similarity=0.369  Sum_probs=85.7

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcC----c-ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYP----Y-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~----~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      |++++|+   |||||+++|++..+..    . +.+.++......+......+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            6889998   9999999999998871    1 444455555667777777799999999999988888889999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD  178 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~D  178 (373)
                      ||++++.||+.+.+++..+...                  . ....++|++|||||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~------------------~-~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNI------------------R-KRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHH------------------H-HHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHH------------------H-ccCCCCCEEEEEeccC
Confidence            9999999999986654444431                  1 1235699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.73  E-value=3.5e-17  Score=164.65  Aligned_cols=154  Identities=18%  Similarity=0.093  Sum_probs=109.5

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCc----------ccccccc-
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQ----------ERYHTLA-  107 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~----------e~~~~l~-  107 (373)
                      ..++++++|.   |||||+|+|++.++...    +.+.+.....+.+++..  +.+|||+|.          +.|..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence            4589999997   99999999999875422    33445555677777765  469999995          3333332 


Q ss_pred             hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc-c
Q psy18160        108 PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC-V  186 (373)
Q Consensus       108 ~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~-v  186 (373)
                      ..+++++|++++|+|++++.++.++. ++..+..                        .+.|++||+||+|+.+.... .
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~------------------------~~~piIiV~NK~Dl~~~~~~~~  342 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE------------------------AGRALVLAFNKWDLVDEDRRYY  342 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH------------------------cCCCEEEEEECcccCChhHHHH
Confidence            23578999999999999998888764 4444433                        46899999999999653111 1


Q ss_pred             CHHHHHH-HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        187 EYSEGEA-YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       187 ~~~e~~~-~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ..++..+ ++.....+++++||++|.||+++|+.+++.+..
T Consensus       343 ~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        343 LEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALES  383 (472)
T ss_pred             HHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            1112221 222234689999999999999999999887654

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.73  E-value=5.8e-18  Score=155.87  Aligned_cols=95  Identities=20%  Similarity=0.234  Sum_probs=79.5

Q ss_pred             ccccccchhhccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160        101 ERYHTLAPMYYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL  179 (373)
Q Consensus       101 e~~~~l~~~~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl  179 (373)
                      ++|..+.+.+++++|++++|||++++. +|+.+.+|+..+..                        .++|++||+||+||
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~------------------------~~i~~vIV~NK~DL   79 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA------------------------QNIEPIIVLNKIDL   79 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH------------------------CCCCEEEEEECccc
Confidence            789999999999999999999999887 99999999986654                        57899999999999


Q ss_pred             CCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q psy18160        180 PTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIA  221 (373)
Q Consensus       180 ~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~  221 (373)
                      .+. +.+..+.+..+ ...+++++++||+++.||+++|+.+.
T Consensus        80 ~~~-~~~~~~~~~~~-~~~g~~v~~~SAktg~gi~eLf~~l~  119 (245)
T TIGR00157        80 LDD-EDMEKEQLDIY-RNIGYQVLMTSSKNQDGLKELIEALQ  119 (245)
T ss_pred             CCC-HHHHHHHHHHH-HHCCCeEEEEecCCchhHHHHHhhhc
Confidence            654 33433444444 45789999999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG0071|consensus

Probab=99.73  E-value=8.7e-17  Score=130.38  Aligned_cols=152  Identities=19%  Similarity=0.260  Sum_probs=119.1

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .++++++|=   ||||++.++.-+.....  |+|  |..+++.+  +.+.|.+||.+|+++.+.+|++||.++.++|||.
T Consensus        17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvG--FnvetVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~   92 (180)
T KOG0071|consen   17 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV   92 (180)
T ss_pred             cceEEEEecccCCceehhhHHhcCCCcccccccc--eeEEEEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEEEE
Confidence            468888884   99999999998877766  665  55667777  4578999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH-----H
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA-----E  196 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~-----~  196 (373)
                      |..+++..+++..-+..+..                    .....+.|++|.+||.|+++.   .+++|+..+.     +
T Consensus        93 Dsa~~dr~eeAr~ELh~ii~--------------------~~em~~~~~LvlANkQDlp~A---~~pqei~d~leLe~~r  149 (180)
T KOG0071|consen   93 DSADRDRIEEARNELHRIIN--------------------DREMRDAIILILANKQDLPDA---MKPQEIQDKLELERIR  149 (180)
T ss_pred             eccchhhHHHHHHHHHHHhC--------------------CHhhhcceEEEEecCcccccc---cCHHHHHHHhcccccc
Confidence            99998777776632222222                    144568999999999999876   5566665543     2


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ....-+.++||.+|+++.|-|.+|...+.
T Consensus       150 ~~~W~vqp~~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  150 DRNWYVQPSCALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             CCccEeeccccccchhHHHHHHHHHhhcc
Confidence            23355789999999999999999986553

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.72  E-value=3.2e-17  Score=141.13  Aligned_cols=136  Identities=11%  Similarity=0.067  Sum_probs=95.8

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc----hhhccCCcEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA----PMYYRNAQAAIIV  120 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~----~~~~~~ad~iilv  120 (373)
                      +++++|.   |||||+|++.+..-... |.+.+       +++.    .+|||||+......+    ...++++|++++|
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~~~~~~v~-------~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v   71 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLARKTQAVE-------FNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYV   71 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccCccceEEE-------ECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEE
Confidence            5778886   99999999876532111 33332       2222    269999973222111    2237899999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      +|+++..++.  ..|+..+                         ..+.|+++++||+|+.+    ...+...++++..++
T Consensus        72 ~d~~~~~s~~--~~~~~~~-------------------------~~~~~ii~v~nK~Dl~~----~~~~~~~~~~~~~~~  120 (158)
T PRK15467         72 HGANDPESRL--PAGLLDI-------------------------GVSKRQIAVISKTDMPD----ADVAATRKLLLETGF  120 (158)
T ss_pred             EeCCCccccc--CHHHHhc-------------------------cCCCCeEEEEEccccCc----ccHHHHHHHHHHcCC
Confidence            9999887653  2333221                         13568999999999854    345667778878775


Q ss_pred             --eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        201 --LFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       201 --~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                        +++++||++++||+++|+.+.+.+.+
T Consensus       121 ~~p~~~~Sa~~g~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        121 EEPIFELNSHDPQSVQQLVDYLASLTKQ  148 (158)
T ss_pred             CCCEEEEECCCccCHHHHHHHHHHhchh
Confidence              89999999999999999999887754

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.72  E-value=1.1e-16  Score=158.97  Aligned_cols=146  Identities=16%  Similarity=0.124  Sum_probs=111.6

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc--------chhh
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL--------APMY  110 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l--------~~~~  110 (373)
                      ..++++++|.   |||||+|+|++..+...    +.+.++....+.+++..  +.+|||+|+.++...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            3478999997   99999999998764322    33456666777787754  689999998665432        2357


Q ss_pred             ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160        111 YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE  190 (373)
Q Consensus       111 ~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e  190 (373)
                      ++++|++++|||++++.+++..  |+..+..                        .+.|+++|+||+|+...       +
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~------------------------~~~piIlV~NK~Dl~~~-------~  326 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK------------------------SKKPFILVLNKIDLKIN-------S  326 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh------------------------CCCCEEEEEECccCCCc-------c
Confidence            8899999999999998887765  6555433                        46799999999998542       2


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       191 ~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      ...+++.++.+++++||++ .||+++|+.|.+.+.+.
T Consensus       327 ~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       327 LEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAF  362 (442)
T ss_pred             hhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence            2345667788999999998 69999999999887643

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK15494 era GTPase Era; Provisional

Probab=99.72  E-value=9.1e-17  Score=154.84  Aligned_cols=150  Identities=19%  Similarity=0.225  Sum_probs=105.8

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--cee--eeEEEEEEEECCEEEEEEEEeCCCcc-cccccch-------h
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFS--AAFITQTVCLDDVTIRFEIWDTAGQE-RYHTLAP-------M  109 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig--~~~~~~~i~~~~~~v~l~i~Dt~G~e-~~~~l~~-------~  109 (373)
                      ....+++++|.   |||||+|+|++..+...  +.+  .++....+..++  ..+.+|||||+. .+..+..       .
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            34578999997   99999999999988643  111  233334555555  357999999984 3333322       2


Q ss_pred             hccCCcEEEEEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160        110 YYRNAQAAIIVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY  188 (373)
Q Consensus       110 ~~~~ad~iilv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~  188 (373)
                      .++++|++++|+|..+  +|.... .|+..+..                        .+.|+++|+||+|+.+.    ..
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~------------------------~~~p~IlViNKiDl~~~----~~  177 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS------------------------LNIVPIFLLNKIDIESK----YL  177 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh------------------------cCCCEEEEEEhhcCccc----cH
Confidence            4679999999999764  455554 34444443                        24567889999998642    24


Q ss_pred             HHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        189 SEGEAYAEENG--LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       189 ~e~~~~~~~~~--~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .++.+++...+  ..++++||++|.|++++|++|...+..
T Consensus       178 ~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        178 NDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKI  217 (339)
T ss_pred             HHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence            55666665554  579999999999999999999988764

>cd01889 SelB_euk SelB subfamily

Probab=99.71  E-value=9.8e-17  Score=142.42  Aligned_cols=153  Identities=13%  Similarity=0.033  Sum_probs=99.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhC----cC---cCc-----ceeeeEEEEEEE----------ECCEEEEEEEEeCCCccc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINV----VF---YPY-----LFSAAFITQTVC----------LDDVTIRFEIWDTAGQER  102 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~----~~---~~~-----Tig~~~~~~~i~----------~~~~~v~l~i~Dt~G~e~  102 (373)
                      ++++++|.   |||||+++|+..    .+   ...     |++..+....+.          .++..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            46889997   999999999972    11   111     555555444443          123467899999999865


Q ss_pred             ccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160        103 YHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       103 ~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  182 (373)
                      +........+.+|++++|+|+++.........+. ....                        .+.|+++|+||+|+...
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~------------------------~~~~~iiv~NK~Dl~~~  135 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEI------------------------LCKKLIVVLNKIDLIPE  135 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHH------------------------cCCCEEEEEECcccCCH
Confidence            4322223345789999999998754443332221 1111                        25699999999998642


Q ss_pred             C-cccCHHHHHHHHH-------HcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        183 R-RCVEYSEGEAYAE-------ENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       183 ~-~~v~~~e~~~~~~-------~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      . .....++..+...       ..+++++++||+++.|++++++.|..++.
T Consensus       136 ~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         136 EERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence            1 1112233322211       13578999999999999999999998875

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR00436 era GTP-binding protein Era

Probab=99.71  E-value=1.1e-16  Score=149.69  Aligned_cols=147  Identities=16%  Similarity=0.047  Sum_probs=102.4

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCccccc-cc-------chhhcc
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH-TL-------APMYYR  112 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~-~l-------~~~~~~  112 (373)
                      +++++|.   |||||+|++++.++...     |....  .+.+...+. ..+.+|||||..+.. .+       ...+++
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~--i~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~   78 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR--ISGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIG   78 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc--EEEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence            6788887   99999999999876543     22211  223333332 468999999975432 11       234678


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH
Q psy18160        113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE  192 (373)
Q Consensus       113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~  192 (373)
                      ++|++++|+|+++..+++  ..++..+..                        .+.|+++|+||+|+...  ....+...
T Consensus        79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~------------------------~~~p~ilV~NK~Dl~~~--~~~~~~~~  130 (270)
T TIGR00436        79 GVDLILFVVDSDQWNGDG--EFVLTKLQN------------------------LKRPVVLTRNKLDNKFK--DKLLPLID  130 (270)
T ss_pred             hCCEEEEEEECCCCCchH--HHHHHHHHh------------------------cCCCEEEEEECeeCCCH--HHHHHHHH
Confidence            999999999999877664  333443333                        36799999999998642  22223344


Q ss_pred             HHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        193 AYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       193 ~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .++...+. +++++||++|.|++++++.|.+.+..
T Consensus       131 ~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~  165 (270)
T TIGR00436       131 KYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPE  165 (270)
T ss_pred             HHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence            55555554 79999999999999999999988754

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01894 EngA1 EngA1 subfamily

Probab=99.71  E-value=1.4e-16  Score=135.55  Aligned_cols=140  Identities=16%  Similarity=0.044  Sum_probs=96.3

Q ss_pred             EEcC---ChhHHHHHhhhCcCc--Cc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc--------cchhhccCCcE
Q psy18160         52 WLKD---RVDCMTQIVINVVFY--PY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT--------LAPMYYRNAQA  116 (373)
Q Consensus        52 vlG~---GKTsLl~rl~~~~~~--~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~--------l~~~~~~~ad~  116 (373)
                      ++|.   |||||++++++....  ..  ....+........++  ..+.+|||+|.+.+..        ....+++.+|+
T Consensus         2 l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~   79 (157)
T cd01894           2 IVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEADV   79 (157)
T ss_pred             ccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence            5665   999999999987532  22  222233334455554  5688999999987654        33456789999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE  196 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~  196 (373)
                      +++|+|..+..+.... .+...+..                        .+.|+++|+||+|+.+. ...     ...+.
T Consensus        80 ii~v~d~~~~~~~~~~-~~~~~~~~------------------------~~~piiiv~nK~D~~~~-~~~-----~~~~~  128 (157)
T cd01894          80 ILFVVDGREGLTPADE-EIAKYLRK------------------------SKKPVILVVNKVDNIKE-EDE-----AAEFY  128 (157)
T ss_pred             EEEEEeccccCCccHH-HHHHHHHh------------------------cCCCEEEEEECcccCCh-HHH-----HHHHH
Confidence            9999999876544432 12222222                        25899999999998664 111     22334


Q ss_pred             HcCC-eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        197 ENGL-LFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       197 ~~~~-~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      ..++ +++++||+++.|++++|++|++.+
T Consensus       129 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  157 (157)
T cd01894         129 SLGFGEPIPISAEHGRGIGDLLDAILELL  157 (157)
T ss_pred             hcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence            4566 789999999999999999998754

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.70  E-value=3.8e-16  Score=149.62  Aligned_cols=152  Identities=16%  Similarity=0.076  Sum_probs=108.7

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccc----cccchhhcc---C
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERY----HTLAPMYYR---N  113 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~----~~l~~~~~~---~  113 (373)
                      .++++|.   |||||++++++.+....     |....  ...+.+++ ...+.+|||||..+.    ..+...+++   .
T Consensus       159 dV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~--ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       159 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPN--LGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCE--EEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            4667776   99999999998764322     33322  23444543 356899999997532    234445544   6


Q ss_pred             CcEEEEEEECCCH---hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160        114 AQAAIIVYDITNQ---DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE  190 (373)
Q Consensus       114 ad~iilv~D~~~~---~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e  190 (373)
                      +|++++|+|+++.   ++++.+..|.+++..+.                   ....+.|++||+||+|+.+. . ...+.
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~-------------------~~l~~kp~IIV~NK~DL~~~-~-~~~~~  294 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYS-------------------PELAEKPRIVVLNKIDLLDE-E-ELAEL  294 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhh-------------------hhhccCCEEEEEeCccCCCh-H-HHHHH
Confidence            9999999999987   67888888887776521                   11246899999999999654 2 22334


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       191 ~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      .+++++.++.+++++||++++||++++++|.+.+
T Consensus       295 ~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       295 LKELKKALGKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             HHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence            4556667788999999999999999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.69  E-value=3.3e-16  Score=138.96  Aligned_cols=160  Identities=13%  Similarity=0.075  Sum_probs=107.4

Q ss_pred             cccCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCc----------c
Q psy18160         38 MMSGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQ----------E  101 (373)
Q Consensus        38 ~~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~----------e  101 (373)
                      ++++.+....++++++|.   |||||++++++.++...   ++|.+........   ...+.||||+|.          +
T Consensus        15 ~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~   91 (196)
T PRK00454         15 KLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKE   91 (196)
T ss_pred             cHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHH
Confidence            466667778889999997   99999999999764433   5554433222222   257899999994          3


Q ss_pred             cccccchhhccCC---cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCC
Q psy18160        102 RYHTLAPMYYRNA---QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD  178 (373)
Q Consensus       102 ~~~~l~~~~~~~a---d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~D  178 (373)
                      ++..+...+++.+   +++++|+|.+++.+.... ++...+..                        .+.|+++++||+|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~------------------------~~~~~iiv~nK~D  146 (196)
T PRK00454         92 KWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE------------------------YGIPVLIVLTKAD  146 (196)
T ss_pred             HHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH------------------------cCCcEEEEEECcc
Confidence            4444555566544   678899998876543321 11122222                        3578999999999


Q ss_pred             CCCCC-cccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        179 LPTSR-RCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       179 l~~~~-~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +.+.. .....+++.+.......+++++||+++.|++++++.|.+.+.
T Consensus       147 l~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        147 KLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            86531 111223344444444678999999999999999999987664

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.69  E-value=2.8e-16  Score=137.97  Aligned_cols=149  Identities=17%  Similarity=0.059  Sum_probs=105.1

Q ss_pred             EEEEcC---ChhHHHHHhhhCcCcCc-------------------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc
Q psy18160         50 QIWLKD---RVDCMTQIVINVVFYPY-------------------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA  107 (373)
Q Consensus        50 ivvlG~---GKTsLl~rl~~~~~~~~-------------------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~  107 (373)
                      ++++|.   |||||++++++......                   .+..+.....+...  ...+.+|||+|+..+...+
T Consensus         2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~   79 (189)
T cd00881           2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSEV   79 (189)
T ss_pred             EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHHH
Confidence            677776   99999999998876643                   11112222223333  4578999999999888888


Q ss_pred             hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc-cc
Q psy18160        108 PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR-CV  186 (373)
Q Consensus       108 ~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~-~v  186 (373)
                      ..+++.+|++++|+|..++.+.... +++..+..                        .+.|+++|+||+|+..... ..
T Consensus        80 ~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~------------------------~~~~i~iv~nK~D~~~~~~~~~  134 (189)
T cd00881          80 IRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE------------------------GGLPIIVAINKIDRVGEEDLEE  134 (189)
T ss_pred             HHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH------------------------CCCCeEEEEECCCCcchhcHHH
Confidence            8999999999999999876644322 33333322                        4789999999999975211 11


Q ss_pred             CHHHHHHHHHH--------------cCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        187 EYSEGEAYAEE--------------NGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       187 ~~~e~~~~~~~--------------~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ..++..+..+.              ...+++++||+++.|++++|.+|.+.+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         135 VLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             HHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence            22333333333              3468999999999999999999998774

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.69  E-value=1.5e-16  Score=138.13  Aligned_cols=153  Identities=19%  Similarity=0.114  Sum_probs=101.3

Q ss_pred             EcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCccc----ccccc---hhhccCCcEE
Q psy18160         53 LKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQER----YHTLA---PMYYRNAQAA  117 (373)
Q Consensus        53 lG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~----~~~l~---~~~~~~ad~i  117 (373)
                      +|.   |||||++++++.++...     |....+  ..+.+++ ...+.+|||||..+    ...+.   ..+++++|++
T Consensus         2 iG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           2 VGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNL--GVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCcHHHHHHHHhcCCccccCCCceeecCcc--eEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            565   99999999999875211     333332  3344441 34579999999732    22332   2346789999


Q ss_pred             EEEEECCCH------hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160        118 IIVYDITNQ------DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG  191 (373)
Q Consensus       118 ilv~D~~~~------~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~  191 (373)
                      ++|+|++++      .+++++..|...+.......             +. ....+.|+++|+||+|+... +.......
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~~~~~~p~ivv~NK~Dl~~~-~~~~~~~~  143 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLET-------------IL-GLLTAKPVIYVLNKIDLDDA-EELEEELV  143 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhh-------------HH-HHHhhCCeEEEEEchhcCch-hHHHHHHH
Confidence            999999988      57888877777765410000             00 00146899999999999654 22222212


Q ss_pred             HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                      .......+.+++++||+++.|++++++++...
T Consensus       144 ~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         144 RELALEEGAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             HHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence            33444456789999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.69  E-value=4.5e-16  Score=132.25  Aligned_cols=140  Identities=16%  Similarity=0.105  Sum_probs=101.6

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc--------chhhcc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL--------APMYYR  112 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l--------~~~~~~  112 (373)
                      ++++++|.   |||||++++.+..+...    +...++....+..++  ..+.+|||+|...+...        ...+++
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            47888887   99999999998875432    222334344455554  46789999998665432        224577


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH
Q psy18160        113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE  192 (373)
Q Consensus       113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~  192 (373)
                      .+|++++|+|++++.+......+..                           ....|+++|+||+|+.+... .      
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~---------------------------~~~~~vi~v~nK~D~~~~~~-~------  125 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL---------------------------PADKPIIVVLNKSDLLPDSE-L------  125 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh---------------------------hcCCCEEEEEEchhcCCccc-c------
Confidence            9999999999998877766543221                           24689999999999976421 1      


Q ss_pred             HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        193 AYAEENGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       193 ~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                       .....+.+++++||+++.|+++++++|...+
T Consensus       126 -~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         126 -LSLLAGKPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             -ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence             3344567899999999999999999987654

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.67  E-value=1.1e-15  Score=156.32  Aligned_cols=144  Identities=16%  Similarity=0.133  Sum_probs=105.0

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ....++++|.   |||||+++|.+.++...   ++..+.....+.+++. ..+.||||||++.|..++...++.+|++++
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            3467888887   99999999999877664   2333333445555433 268899999999999999999999999999


Q ss_pred             EEECCCH---hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160        120 VYDITNQ---DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE  196 (373)
Q Consensus       120 v~D~~~~---~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~  196 (373)
                      |+|+++.   .+.+.+    ..+.                        ..++|+++++||+|+...    ..++..+.+.
T Consensus       165 VVda~dgv~~qT~e~i----~~~~------------------------~~~vPiIVviNKiDl~~~----~~e~v~~~L~  212 (587)
T TIGR00487       165 VVAADDGVMPQTIEAI----SHAK------------------------AANVPIIVAINKIDKPEA----NPDRVKQELS  212 (587)
T ss_pred             EEECCCCCCHhHHHHH----HHHH------------------------HcCCCEEEEEECcccccC----CHHHHHHHHH
Confidence            9999873   333322    1222                        246899999999998642    2344444333


Q ss_pred             HcC---------CeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        197 ENG---------LLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       197 ~~~---------~~~~evSak~~~gI~~lf~~L~~  222 (373)
                      ..+         .+++++||++|.|++++|++|..
T Consensus       213 ~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       213 EYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             HhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            332         47999999999999999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.67  E-value=2e-15  Score=150.37  Aligned_cols=153  Identities=14%  Similarity=0.056  Sum_probs=105.6

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--cee--eeEEEEEEEECCEEEEEEEEeCCCcccccccc----------
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFS--AAFITQTVCLDDVTIRFEIWDTAGQERYHTLA----------  107 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig--~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~----------  107 (373)
                      ...++++++|.   |||||+|++++.+....  ..|  .+.....+..++.  .+.+|||+|..++....          
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence            34588999997   99999999998764332  222  2333344555554  57899999986554332          


Q ss_pred             -hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160        108 -PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV  186 (373)
Q Consensus       108 -~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v  186 (373)
                       ..+++.+|++++|+|++++.+..+.. ++..+..                        .+.|+++|+||+|+.+.  ..
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~------------------------~~~~iiiv~NK~Dl~~~--~~  300 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE------------------------AGKALVIVVNKWDLVKD--EK  300 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH------------------------cCCcEEEEEECcccCCC--HH
Confidence             23678999999999999887776653 3333333                        36799999999999721  12


Q ss_pred             CHHHHHHH-HHH----cCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        187 EYSEGEAY-AEE----NGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       187 ~~~e~~~~-~~~----~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ..++..+. ...    .+.+++++||++|.|++++|+++.+....
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       301 TREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             HHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            22222222 122    24689999999999999999999876643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01895 EngA2 EngA2 subfamily

Probab=99.67  E-value=2.7e-15  Score=129.46  Aligned_cols=149  Identities=16%  Similarity=0.065  Sum_probs=99.2

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc----------c-ch
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT----------L-AP  108 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~----------l-~~  108 (373)
                      .++++++|.   |||||++++++..+...    ....+.....+..++..  +.+|||+|..+...          . ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHH
Confidence            367889997   99999999998764322    11222333445555544  67999999754311          1 12


Q ss_pred             hhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160        109 MYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY  188 (373)
Q Consensus       109 ~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~  188 (373)
                      ..++.+|++++|+|++++.+.... .++..+..                        .+.|+++|+||+|+... +....
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~------------------------~~~~~iiv~nK~Dl~~~-~~~~~  133 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE------------------------EGKALVIVVNKWDLVEK-DSKTM  133 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh------------------------cCCCEEEEEeccccCCc-cHHHH
Confidence            346789999999999988776543 23333322                        35799999999998754 21222


Q ss_pred             HHHHH-HHHHc----CCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        189 SEGEA-YAEEN----GLLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       189 ~e~~~-~~~~~----~~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                      ++..+ +.+..    ..+++++||+++.|++++++.+.+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         134 KEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             HHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence            22222 22333    3689999999999999999988753

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.67  E-value=6.1e-16  Score=154.37  Aligned_cols=142  Identities=19%  Similarity=0.144  Sum_probs=106.0

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc--------chhhc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL--------APMYY  111 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l--------~~~~~  111 (373)
                      .++++++|.   |||||+|+|++.+....    ....++....+.+++.  .+.+|||+|.+++...        ...++
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            368899997   99999999999875322    2234555666777664  5789999998765442        22368


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160        112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG  191 (373)
Q Consensus       112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~  191 (373)
                      +++|++++|||++++.++++...|..                           ..+.|+++|+||+|+.+. ....    
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~---------------------------~~~~piiiV~NK~DL~~~-~~~~----  340 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE---------------------------LKDKPVIVVLNKADLTGE-IDLE----  340 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh---------------------------cCCCCcEEEEEhhhcccc-chhh----
Confidence            89999999999999888775543322                           146799999999999653 1111    


Q ss_pred             HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                          ...+.+++++||++|.|+++++++|.+.+..
T Consensus       341 ----~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        341 ----EENGKPVIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             ----hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence                3345689999999999999999999987753

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.67  E-value=1e-15  Score=157.45  Aligned_cols=152  Identities=18%  Similarity=0.193  Sum_probs=110.7

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCc--C---------cCc-----ceeeeEEEEEEEE-----CCEEEEEEEEeCCCccc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVV--F---------YPY-----LFSAAFITQTVCL-----DDVTIRFEIWDTAGQER  102 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~--~---------~~~-----Tig~~~~~~~i~~-----~~~~v~l~i~Dt~G~e~  102 (373)
                      ...++++|.   |||||+.+|+...  +         .+.     +.|.++....+.+     +++.+.+.||||+|+++
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            446777776   9999999998631  1         111     3455444433333     56678999999999999


Q ss_pred             ccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160        103 YHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       103 ~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  182 (373)
                      |...+..+++.+|++|+|+|+++....+....|.... .                        .++|+++|+||+|+...
T Consensus        87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~------------------------~~lpiIvViNKiDl~~a  141 (600)
T PRK05433         87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E------------------------NDLEIIPVLNKIDLPAA  141 (600)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H------------------------CCCCEEEEEECCCCCcc
Confidence            9998999999999999999999876655555554322 2                        36789999999998653


Q ss_pred             CcccCHHHHHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        183 RRCVEYSEGEAYAEENGLL---FMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       183 ~~~v~~~e~~~~~~~~~~~---~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                       .  ..+...++.+.++++   ++++||++|.||++++++|.+.+..
T Consensus       142 -~--~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        142 -D--PERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             -c--HHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence             1  122233455555654   8999999999999999999988763

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.66  E-value=6.6e-16  Score=135.53  Aligned_cols=148  Identities=11%  Similarity=0.079  Sum_probs=98.5

Q ss_pred             ccCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcc----------c
Q psy18160         39 MSGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQE----------R  102 (373)
Q Consensus        39 ~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e----------~  102 (373)
                      ..+.++....+++++|.   |||||+|++++..+...   ++|.+.....+..++   .+.+|||+|..          .
T Consensus        10 ~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~   86 (179)
T TIGR03598        10 LKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEK   86 (179)
T ss_pred             HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHH
Confidence            34556667789999998   99999999999864322   555444333344443   58899999952          3


Q ss_pred             ccccchhhccC---CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160        103 YHTLAPMYYRN---AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL  179 (373)
Q Consensus       103 ~~~l~~~~~~~---ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl  179 (373)
                      +..+...|++.   +|++++|+|.+++.+..+.. ++..+..                        .+.|+++|+||+|+
T Consensus        87 ~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~------------------------~~~pviiv~nK~D~  141 (179)
T TIGR03598        87 WQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE------------------------RGIPVLIVLTKADK  141 (179)
T ss_pred             HHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH------------------------cCCCEEEEEECccc
Confidence            34444556654   58999999998865555442 2233322                        36799999999998


Q ss_pred             CCCC-cccCHHHHHHHHHHcC--CeEEEEcCCCCCCHH
Q psy18160        180 PTSR-RCVEYSEGEAYAEENG--LLFMETSAKTAMNVN  214 (373)
Q Consensus       180 ~~~~-~~v~~~e~~~~~~~~~--~~~~evSak~~~gI~  214 (373)
                      .... .....+++++..+..+  .+++++||++|+|++
T Consensus       142 ~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       142 LKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             CCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            6431 1122344555555543  479999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.65  E-value=1.5e-15  Score=157.72  Aligned_cols=147  Identities=15%  Similarity=0.115  Sum_probs=106.8

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      ....++++|.   |||||+++|....+...     |.....+...+..++....+.||||||++.|..++..+++.+|++
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            4456778886   99999999998877654     333333333444455568899999999999999999999999999


Q ss_pred             EEEEECCCH---hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH
Q psy18160        118 IIVYDITNQ---DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY  194 (373)
Q Consensus       118 ilv~D~~~~---~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~  194 (373)
                      |+|+|+++.   .+++.+.    .+..                        .++|++|++||+|+...    ..++..+.
T Consensus       323 ILVVDA~dGv~~QT~E~I~----~~k~------------------------~~iPiIVViNKiDl~~~----~~e~v~~e  370 (742)
T CHL00189        323 ILIIAADDGVKPQTIEAIN----YIQA------------------------ANVPIIVAINKIDKANA----NTERIKQQ  370 (742)
T ss_pred             EEEEECcCCCChhhHHHHH----HHHh------------------------cCceEEEEEECCCcccc----CHHHHHHH
Confidence            999999874   3333322    1222                        46899999999998653    12222221


Q ss_pred             -------HHHcC--CeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        195 -------AEENG--LLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       195 -------~~~~~--~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                             ...++  ++++++||++|.||+++|+.|....
T Consensus       371 L~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        371 LAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             HHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence                   22233  6899999999999999999987653

>KOG0076|consensus

Probab=99.65  E-value=2.7e-16  Score=132.21  Aligned_cols=156  Identities=23%  Similarity=0.245  Sum_probs=119.4

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCc------CcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhc
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVV------FYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYY  111 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~------~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~  111 (373)
                      ++.+-++++|-   |||||+.+.....      ..+.    |+|...  -++.++  ...+.+||.+||+..+++|..||
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni--g~i~v~--~~~l~fwdlgGQe~lrSlw~~yY   90 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI--GTIEVC--NAPLSFWDLGGQESLRSLWKKYY   90 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee--cceeec--cceeEEEEcCChHHHHHHHHHHH
Confidence            34456778885   9999998875431      1112    666554  455555  34588999999999999999999


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160        112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG  191 (373)
Q Consensus       112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~  191 (373)
                      ..++++|+++|.++++-|++...-++.+...                    ....++|+++.+||.|+.+.   ....+.
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~--------------------E~leg~p~L~lankqd~q~~---~~~~El  147 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVEN--------------------EKLEGAPVLVLANKQDLQNA---MEAAEL  147 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHHH--------------------HHhcCCchhhhcchhhhhhh---hhHHHH
Confidence            9999999999999999999988777766551                    44578999999999999765   333343


Q ss_pred             HH---HHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        192 EA---YAEEN---GLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       192 ~~---~~~~~---~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      ..   .+...   ..++.+|||.+|+||++...|+++.+.+.
T Consensus       148 ~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  148 DGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             HHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            33   33333   26799999999999999999999988754

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.65  E-value=3.8e-15  Score=146.52  Aligned_cols=151  Identities=19%  Similarity=0.150  Sum_probs=108.6

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCccc----ccccchhhc---cC
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQER----YHTLAPMYY---RN  113 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~----~~~l~~~~~---~~  113 (373)
                      .++++|-   |||||++++++.+....     |....+.  .+.+++ ...+.+||+||..+    ...+...|+   +.
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG--~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier  236 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG--VVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIER  236 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE--EEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence            5777776   99999999998764322     4443332  334431 34688999999743    223445554   45


Q ss_pred             CcEEEEEEECCCH---hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160        114 AQAAIIVYDITNQ---DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE  190 (373)
Q Consensus       114 ad~iilv~D~~~~---~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e  190 (373)
                      ++++++|+|+++.   +++++...|..++..+.                   ....+.|++||+||+|+...     .+.
T Consensus       237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~-------------------~~L~~kP~IVV~NK~DL~~~-----~e~  292 (424)
T PRK12297        237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYN-------------------PRLLERPQIVVANKMDLPEA-----EEN  292 (424)
T ss_pred             CCEEEEEEeCCccccCChHHHHHHHHHHHhhhc-------------------hhccCCcEEEEEeCCCCcCC-----HHH
Confidence            9999999999864   67777788887776621                   11246899999999998432     344


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       191 ~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ..++++.++.+++++||++++|+++++++|.+.+.+
T Consensus       293 l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~  328 (424)
T PRK12297        293 LEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEE  328 (424)
T ss_pred             HHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            566777777889999999999999999999887753

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.62  E-value=4.8e-15  Score=152.14  Aligned_cols=148  Identities=17%  Similarity=0.070  Sum_probs=107.4

Q ss_pred             EEEEEcC---ChhHHHHHhhhC---cCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINV---VFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~---~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      .++++|.   |||||+++|++.   .+.+.   +++.++....+.+++  ..+.+||+||+++|......++.++|++++
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL   79 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALL   79 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence            4677776   999999999963   33332   444455555666666  678999999999998877788899999999


Q ss_pred             EEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCCCcc-cCHHHHHHH
Q psy18160        120 VYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTSRRC-VEYSEGEAY  194 (373)
Q Consensus       120 v~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~~~~-v~~~e~~~~  194 (373)
                      |+|+++   +.+++.+.    .+..                        .++| ++||+||+|+.+.... ...+++.++
T Consensus        80 VVDa~~G~~~qT~ehl~----il~~------------------------lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~  131 (581)
T TIGR00475        80 VVDADEGVMTQTGEHLA----VLDL------------------------LGIPHTIVVITKADRVNEEEIKRTEMFMKQI  131 (581)
T ss_pred             EEECCCCCcHHHHHHHH----HHHH------------------------cCCCeEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            999988   45554442    2222                        2456 9999999999754111 123345566


Q ss_pred             HHHc----CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        195 AEEN----GLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       195 ~~~~----~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ++..    +++++++||++|+|+++++..|...+..
T Consensus       132 l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       132 LNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             HHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence            6554    4789999999999999999988776543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.62  E-value=3.4e-15  Score=133.87  Aligned_cols=109  Identities=17%  Similarity=0.178  Sum_probs=77.4

Q ss_pred             EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCH----hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCC
Q psy18160         90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ----DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP  165 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~----~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (373)
                      ..+.||||+|+++|.......++++|++++|+|++++    .+++.+.    .+..                       .
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~----~~~~-----------------------~  135 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLA----ALEI-----------------------M  135 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHH----HHHH-----------------------c
Confidence            5789999999998877777777889999999999873    2333222    2222                       1


Q ss_pred             CCCeEEEEEeCCCCCCCCc-ccCHHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        166 PNIVIALAGNKADLPTSRR-CVEYSEGEAYAEEN---GLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       166 ~~~piilVgnK~Dl~~~~~-~v~~~e~~~~~~~~---~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ...|++||+||+|+..... ....++..++++..   +.+++++||++|.|++++|+.|.+.+.
T Consensus       136 ~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~  199 (203)
T cd01888         136 GLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP  199 (203)
T ss_pred             CCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence            2247899999999965311 11123344444432   578999999999999999999988765

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04163 Era Era subfamily

Probab=99.62  E-value=1e-14  Score=124.67  Aligned_cols=151  Identities=16%  Similarity=0.049  Sum_probs=97.6

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc--------cchhhccC
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT--------LAPMYYRN  113 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~--------l~~~~~~~  113 (373)
                      ..+++++|.   |||||++++.+.++...  .................+.+.+|||+|......        .....+..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~   82 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD   82 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence            357888887   99999999998865433  111111111112233346788999999754332        23445789


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160        114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA  193 (373)
Q Consensus       114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~  193 (373)
                      +|++++|+|++++.+.. ...++..+..                        .+.|+++|+||+|+... .....+....
T Consensus        83 ~d~i~~v~d~~~~~~~~-~~~~~~~~~~------------------------~~~~~iiv~nK~Dl~~~-~~~~~~~~~~  136 (168)
T cd04163          83 VDLVLFVVDASEPIGEG-DEFILELLKK------------------------SKTPVILVLNKIDLVKD-KEDLLPLLEK  136 (168)
T ss_pred             CCEEEEEEECCCccCch-HHHHHHHHHH------------------------hCCCEEEEEEchhcccc-HHHHHHHHHH
Confidence            99999999999872211 1223333333                        25799999999998742 1122222333


Q ss_pred             HHHHcC-CeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        194 YAEENG-LLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       194 ~~~~~~-~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                      +....+ .+++++|++++.|++++++.|.+.
T Consensus       137 ~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         137 LKELGPFAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             HHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence            444443 689999999999999999998765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.61  E-value=8.5e-15  Score=150.49  Aligned_cols=138  Identities=17%  Similarity=0.128  Sum_probs=101.8

Q ss_pred             ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc------chhhc--cCCcEEEEEEECC
Q psy18160         56 RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL------APMYY--RNAQAAIIVYDIT  124 (373)
Q Consensus        56 GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l------~~~~~--~~ad~iilv~D~~  124 (373)
                      |||||+|++++..+...   +.+.+.....+.+++.  .+++|||+|++++...      .+.++  +++|++++|+|.+
T Consensus         6 GKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat   83 (591)
T TIGR00437         6 GKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDAS   83 (591)
T ss_pred             CHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCC
Confidence            99999999998876443   3344555556666664  4789999999887654      34444  3799999999998


Q ss_pred             CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEE
Q psy18160        125 NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFME  204 (373)
Q Consensus       125 ~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~e  204 (373)
                      +.+.   ...+..++.+                        .++|+++|+||+|+.+. +.+. .+.+++.+.+++++++
T Consensus        84 ~ler---~l~l~~ql~~------------------------~~~PiIIVlNK~Dl~~~-~~i~-~d~~~L~~~lg~pvv~  134 (591)
T TIGR00437        84 NLER---NLYLTLQLLE------------------------LGIPMILALNLVDEAEK-KGIR-IDEEKLEERLGVPVVP  134 (591)
T ss_pred             cchh---hHHHHHHHHh------------------------cCCCEEEEEehhHHHHh-CCCh-hhHHHHHHHcCCCEEE
Confidence            7432   2223233322                        36899999999998653 3333 3567888889999999


Q ss_pred             EcCCCCCCHHHHHHHHHHHc
Q psy18160        205 TSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       205 vSak~~~gI~~lf~~L~~~i  224 (373)
                      +||++|+|++++++.+.+..
T Consensus       135 tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       135 TSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             EECCCCCCHHHHHHHHHHHh
Confidence            99999999999999998754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.60  E-value=1e-14  Score=152.81  Aligned_cols=143  Identities=16%  Similarity=0.157  Sum_probs=103.2

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ....++++|.   |||||+++|.+..+...   .+..+.....+.+++  ..+.||||+|++.|..++...++.+|++||
T Consensus       289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            4467888886   99999999998777654   222222233455555  468899999999999999999999999999


Q ss_pred             EEECCCH---hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH----
Q psy18160        120 VYDITNQ---DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE----  192 (373)
Q Consensus       120 v~D~~~~---~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~----  192 (373)
                      |||+++.   .+++.+.    .+.                        ..++|++|++||+|+...    ..+...    
T Consensus       367 VVdAddGv~~qT~e~i~----~a~------------------------~~~vPiIVviNKiDl~~a----~~e~V~~eL~  414 (787)
T PRK05306        367 VVAADDGVMPQTIEAIN----HAK------------------------AAGVPIIVAINKIDKPGA----NPDRVKQELS  414 (787)
T ss_pred             EEECCCCCCHhHHHHHH----HHH------------------------hcCCcEEEEEECcccccc----CHHHHHHHHH
Confidence            9999873   3433321    121                        246899999999999653    112211    


Q ss_pred             ---HHHHHcC--CeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        193 ---AYAEENG--LLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       193 ---~~~~~~~--~~~~evSak~~~gI~~lf~~L~~  222 (373)
                         .++..++  ++++++||++|.||+++|+.|..
T Consensus       415 ~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~  449 (787)
T PRK05306        415 EYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL  449 (787)
T ss_pred             HhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence               1233333  68999999999999999999875

>KOG0074|consensus

Probab=99.60  E-value=5.4e-15  Score=120.18  Aligned_cols=155  Identities=19%  Similarity=0.169  Sum_probs=118.9

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCcceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ...+++.++|-   |||||+.++.+......|....|..+.+.+++ .+.+.+||.+|+...+..|..||.+.|++|+|.
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVI   93 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVI   93 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEEEE
Confidence            34578888884   99999999998876665444456678888875 578999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH-----
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE-----  196 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~-----  196 (373)
                      |.+|+.-|+++.+-+.++.+-                    .....+|+++.+||.|+...   .+.++...-+.     
T Consensus        94 DS~D~krfeE~~~el~ELlee--------------------eKl~~vpvlIfankQdllta---a~~eeia~klnl~~lr  150 (185)
T KOG0074|consen   94 DSTDEKRFEEISEELVELLEE--------------------EKLAEVPVLIFANKQDLLTA---AKVEEIALKLNLAGLR  150 (185)
T ss_pred             eCCchHhHHHHHHHHHHHhhh--------------------hhhhccceeehhhhhHHHhh---cchHHHHHhcchhhhh
Confidence            999999999887555554431                    34468999999999998654   33333222221     


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                      ..-..+-++||.+++|+.+-.+++.+.
T Consensus       151 dRswhIq~csals~eg~~dg~~wv~sn  177 (185)
T KOG0074|consen  151 DRSWHIQECSALSLEGSTDGSDWVQSN  177 (185)
T ss_pred             hceEEeeeCccccccCccCcchhhhcC
Confidence            112457899999999999988887653

>PRK00089 era GTPase Era; Reviewed

Probab=99.59  E-value=1.8e-14  Score=136.43  Aligned_cols=153  Identities=16%  Similarity=0.101  Sum_probs=100.9

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeE-EEEEEEECCEEEEEEEEeCCCccccc--------ccchhhc
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAF-ITQTVCLDDVTIRFEIWDTAGQERYH--------TLAPMYY  111 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~-~~~~i~~~~~~v~l~i~Dt~G~e~~~--------~l~~~~~  111 (373)
                      .+-+++++|.   |||||+|++++.++...  ....+. ....+... ....+.+|||+|.....        ......+
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            4567888887   99999999999877544  111111 11122222 23678999999975432        1233457


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHH-HHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160        112 RNAQAAIIVYDITNQDTFGRAKSW-VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE  190 (373)
Q Consensus       112 ~~ad~iilv~D~~~~~Sf~~i~~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e  190 (373)
                      .++|++++|+|+++..+  ....+ +..+..                        .+.|+++|+||+|+... +....+.
T Consensus        83 ~~~D~il~vvd~~~~~~--~~~~~i~~~l~~------------------------~~~pvilVlNKiDl~~~-~~~l~~~  135 (292)
T PRK00089         83 KDVDLVLFVVDADEKIG--PGDEFILEKLKK------------------------VKTPVILVLNKIDLVKD-KEELLPL  135 (292)
T ss_pred             hcCCEEEEEEeCCCCCC--hhHHHHHHHHhh------------------------cCCCEEEEEECCcCCCC-HHHHHHH
Confidence            89999999999988322  22222 222222                        36799999999999742 2222333


Q ss_pred             HHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        191 GEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       191 ~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ..++.+..+ .+++++||+++.|++++++.|.+.+..
T Consensus       136 ~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~  172 (292)
T PRK00089        136 LEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPE  172 (292)
T ss_pred             HHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence            444555444 579999999999999999999988764

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.59  E-value=1.4e-14  Score=123.32  Aligned_cols=142  Identities=18%  Similarity=0.165  Sum_probs=96.9

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc-cee--eeEEEEEEEECCEEEEEEEEeCCCccccc------ccchhhc--cC
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY-LFS--AAFITQTVCLDDVTIRFEIWDTAGQERYH------TLAPMYY--RN  113 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig--~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~------~l~~~~~--~~  113 (373)
                      |+++++|.   |||||+|++++.+.... ..|  ++.....+.+++  ..+.++|+||.-...      .+...++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            57899997   99999999999985543 222  244455666777  457899999953222      2334444  58


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160        114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA  193 (373)
Q Consensus       114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~  193 (373)
                      .|+++.|.|+++.+.   -.....++.+                        -++|+++|.||+|+... +.+.. +...
T Consensus        79 ~D~ii~VvDa~~l~r---~l~l~~ql~e------------------------~g~P~vvvlN~~D~a~~-~g~~i-d~~~  129 (156)
T PF02421_consen   79 PDLIIVVVDATNLER---NLYLTLQLLE------------------------LGIPVVVVLNKMDEAER-KGIEI-DAEK  129 (156)
T ss_dssp             SSEEEEEEEGGGHHH---HHHHHHHHHH------------------------TTSSEEEEEETHHHHHH-TTEEE--HHH
T ss_pred             CCEEEEECCCCCHHH---HHHHHHHHHH------------------------cCCCEEEEEeCHHHHHH-cCCEE-CHHH
Confidence            999999999987542   2233344444                        36899999999998653 22322 3567


Q ss_pred             HHHHcCCeEEEEcCCCCCCHHHHHHHH
Q psy18160        194 YAEENGLLFMETSAKTAMNVNEIFVEI  220 (373)
Q Consensus       194 ~~~~~~~~~~evSak~~~gI~~lf~~L  220 (373)
                      +.+.+|+|++++||++++|++++++.|
T Consensus       130 Ls~~Lg~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  130 LSERLGVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             HHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred             HHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence            888899999999999999999998865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd00880 Era_like Era (E

Probab=99.58  E-value=1.7e-14  Score=121.71  Aligned_cols=141  Identities=16%  Similarity=0.038  Sum_probs=95.8

Q ss_pred             ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc-------hhhccCCcEEEEEEECC
Q psy18160         56 RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA-------PMYYRNAQAAIIVYDIT  124 (373)
Q Consensus        56 GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~-------~~~~~~ad~iilv~D~~  124 (373)
                      |||||++++++..+...    +............++ ...+.+|||+|...+....       ..+++.+|++++|+|.+
T Consensus         8 GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~   86 (163)
T cd00880           8 GKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDAD   86 (163)
T ss_pred             CHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCC
Confidence            99999999998765522    111122222333321 4578999999987665433       34788999999999999


Q ss_pred             CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH---HHHHHHHHcCCe
Q psy18160        125 NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS---EGEAYAEENGLL  201 (373)
Q Consensus       125 ~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~---e~~~~~~~~~~~  201 (373)
                      +..+..... |......                        .+.|+++|+||+|+.... .....   .........+.+
T Consensus        87 ~~~~~~~~~-~~~~~~~------------------------~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~  140 (163)
T cd00880          87 LRADEEEEK-LLELLRE------------------------RGKPVLLVLNKIDLLPEE-EEEELLELRLLILLLLLGLP  140 (163)
T ss_pred             CCCCHHHHH-HHHHHHh------------------------cCCeEEEEEEccccCChh-hHHHHHHHHHhhcccccCCc
Confidence            887766554 3333322                        578999999999987541 11111   112223334578


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHH
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~  223 (373)
                      ++++||+++.|+++++++|.+.
T Consensus       141 ~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         141 VIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             eEEEeeeccCCHHHHHHHHHhh
Confidence            9999999999999999998764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01859 MJ1464 MJ1464

Probab=99.58  E-value=4.4e-15  Score=127.34  Aligned_cols=152  Identities=15%  Similarity=0.101  Sum_probs=102.7

Q ss_pred             cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC
Q psy18160        104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR  183 (373)
Q Consensus       104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~  183 (373)
                      +.+.++.++++|++++|+|++++....+. .+...+..                        .+.|+++|+||+|+.+. 
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~------------------------~~~p~iiv~NK~Dl~~~-   56 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE------------------------LGKKLLIVLNKADLVPK-   56 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh------------------------CCCcEEEEEEhHHhCCH-
Confidence            45677788899999999999876432221 12222221                        35799999999998542 


Q ss_pred             cccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccc
Q psy18160        184 RCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSS  263 (373)
Q Consensus       184 ~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~  263 (373)
                      .  ..++...+....+.+++.+||+++.|++++++.+.+.+...                                    
T Consensus        57 ~--~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~~~------------------------------------   98 (156)
T cd01859          57 E--VLEKWKSIKESEGIPVVYVSAKERLGTKILRRTIKELAKID------------------------------------   98 (156)
T ss_pred             H--HHHHHHHHHHhCCCcEEEEEccccccHHHHHHHHHHHHhhc------------------------------------
Confidence            1  11122233444567899999999999999999998766410                                    


Q ss_pred             cceeecccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeee
Q psy18160        264 IHILTMANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFS  343 (373)
Q Consensus       264 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~  343 (373)
                                                     ....+++++|.+++|||++++++..+ ....+.++.|        ....
T Consensus        99 -------------------------------~~~~~~~~ig~~~~Gkssl~~~l~~~-~~~~~~~~~~--------~t~~  138 (156)
T cd01859          99 -------------------------------GKEGKVGVVGYPNVGKSSIINALKGR-HSASTSPSPG--------YTKG  138 (156)
T ss_pred             -------------------------------CCCcEEEEECCCCCCHHHHHHHHhCC-CccccCCCCC--------eeee
Confidence                                           01246799999999999999999854 3556778888        3332


Q ss_pred             cceeeeCCeEEEEEehhhH
Q psy18160        344 MPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       344 ~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+..++   .+.|||++
T Consensus       139 ~~~~~~~~---~~~~~Dtp  154 (156)
T cd01859         139 EQLVKITS---KIYLLDTP  154 (156)
T ss_pred             eEEEEcCC---CEEEEECc
Confidence            22223333   58899975

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.58  E-value=5.2e-14  Score=120.11  Aligned_cols=151  Identities=17%  Similarity=0.173  Sum_probs=116.2

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcCcC--------c-------ceeeeEEEEEEEECCEEEEEEEEeCCCccccc
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYP--------Y-------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH  104 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~--------~-------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~  104 (373)
                      ......+|++.|.   ||||++.+++......        .       |+..||.  .+.+++ ...+.++|||||+||.
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g--~~~~~~-~~~v~LfgtPGq~RF~   82 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG--SIELDE-DTGVHLFGTPGQERFK   82 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeeccc--ceEEcC-cceEEEecCCCcHHHH
Confidence            3445578888887   9999999999876311        1       4555554  333443 2458899999999999


Q ss_pred             ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc
Q psy18160        105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR  184 (373)
Q Consensus       105 ~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~  184 (373)
                      .+|..+.+++.++|+++|.+.+..+ +....++.+..                       ...+|++|..||.||.+.  
T Consensus        83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~-----------------------~~~ip~vVa~NK~DL~~a--  136 (187)
T COG2229          83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTS-----------------------RNPIPVVVAINKQDLFDA--  136 (187)
T ss_pred             HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhh-----------------------ccCCCEEEEeeccccCCC--
Confidence            9999999999999999999999988 44555554443                       112999999999999875  


Q ss_pred             ccCHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        185 CVEYSEGEAYAEEN--GLLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       185 ~v~~~e~~~~~~~~--~~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                       .+.+++.++.+..  ..+.++++|.++++..+.++.+...
T Consensus       137 -~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         137 -LPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             -CCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence             5677776666554  7899999999999999998888765

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.57  E-value=2.9e-14  Score=142.13  Aligned_cols=164  Identities=17%  Similarity=0.100  Sum_probs=104.7

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCccc----ccccch---hhcc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQER----YHTLAP---MYYR  112 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~----~~~l~~---~~~~  112 (373)
                      ..++++|-   |||||+|++++.+....     |+...  .-.+.+++  ..+.+|||||..+    ...+..   .++.
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~--lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie  235 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPN--LGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE  235 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccce--EEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence            35677775   99999999998765432     33322  23445554  4689999999632    112222   2456


Q ss_pred             CCcEEEEEEECCC----HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160        113 NAQAAIIVYDITN----QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY  188 (373)
Q Consensus       113 ~ad~iilv~D~~~----~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~  188 (373)
                      .+|++|+|+|+++    ++.++++..|..++..+.... .         .........+.|++||+||+|+.+. +.+ .
T Consensus       236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l-~---------~~~~~~~l~~kP~IVVlNKiDL~da-~el-~  303 (500)
T PRK12296        236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPAL-D---------GDLGLGDLAERPRLVVLNKIDVPDA-REL-A  303 (500)
T ss_pred             hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcc-c---------ccchhhhhcCCCEEEEEECccchhh-HHH-H
Confidence            7999999999985    345566666666665421100 0         0000001246899999999999653 211 1


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       189 ~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +.........+++++++||+++.|+++++.+|.+.+...
T Consensus       304 e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~  342 (500)
T PRK12296        304 EFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEA  342 (500)
T ss_pred             HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            222333445578999999999999999999999887654

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.57  E-value=3.4e-14  Score=149.65  Aligned_cols=151  Identities=17%  Similarity=0.078  Sum_probs=105.2

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCccc----------ccccc-
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQER----------YHTLA-  107 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~----------~~~l~-  107 (373)
                      ..++++++|.   |||||+|++++.++...    ..+.+.....+.+++..  +.+|||+|..+          |..+. 
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            4578999997   99999999999875322    22334445566677765  55999999632          22222 


Q ss_pred             hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccC
Q psy18160        108 PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE  187 (373)
Q Consensus       108 ~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~  187 (373)
                      ..+++.+|++++|+|+++..+++++. ++..+..                        .+.|++||+||+|+.+..   .
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~------------------------~~~piIiV~NK~DL~~~~---~  578 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD------------------------AGRALVLVFNKWDLMDEF---R  578 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH------------------------cCCCEEEEEEchhcCChh---H
Confidence            23478999999999999988887764 3344433                        468999999999996531   1


Q ss_pred             HHHHHHHH-HHc----CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        188 YSEGEAYA-EEN----GLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       188 ~~e~~~~~-~~~----~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .+...+.. ..+    ..+++++||++|.|++++|+.+.+.+.+
T Consensus       579 ~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        579 RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            12222211 111    2467899999999999999999887764

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.57  E-value=3.3e-14  Score=127.49  Aligned_cols=116  Identities=13%  Similarity=0.146  Sum_probs=86.3

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCC-cEEEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNA-QAAIIVYD  122 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~a-d~iilv~D  122 (373)
                      .++++|.   |||||+++|..+.+...  ++............+..+.+.+||+||+++++..+..+++++ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            4678887   99999999999988766  333232221221123456799999999999998888999999 99999999


Q ss_pred             CCCH-hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160        123 ITNQ-DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       123 ~~~~-~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  182 (373)
                      .++. .++..+.+|+..+....                  ....+.+|++||+||+|+...
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~------------------~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDL------------------EKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHH------------------hhccCCCCEEEEecchhhccc
Confidence            9998 68888777766554310                  012357999999999998653

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.56  E-value=4.1e-14  Score=144.60  Aligned_cols=148  Identities=18%  Similarity=0.084  Sum_probs=99.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc-------ceeeeEEEEEEE------------ECCEEEEEEEEeCCCcccccc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY-------LFSAAFITQTVC------------LDDVTIRFEIWDTAGQERYHT  105 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~-------Tig~~~~~~~i~------------~~~~~v~l~i~Dt~G~e~~~~  105 (373)
                      ..++++|.   |||||+++|.+..+...       ++|..+......            ++.....+.+|||||++.|..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            46788887   99999999998877543       444443222110            001112388999999999999


Q ss_pred             cchhhccCCcEEEEEEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160        106 LAPMYYRNAQAAIIVYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       106 l~~~~~~~ad~iilv~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  182 (373)
                      ++..+++.+|++++|+|+++   +.+++.+.    .+..                        .++|+++++||+|+...
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~------------------------~~vpiIVv~NK~Dl~~~  136 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM------------------------YKTPFVVAANKIDRIPG  136 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH------------------------cCCCEEEEEECCCccch
Confidence            99999999999999999987   45554443    1222                        36799999999998642


Q ss_pred             Ccc---cC--------HHH------------HHHHHH------------Hc--CCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        183 RRC---VE--------YSE------------GEAYAE------------EN--GLLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       183 ~~~---v~--------~~e------------~~~~~~------------~~--~~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                      ...   .+        .+.            ..++++            .+  ..+++++||++|+|++++..+|...
T Consensus       137 ~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       137 WRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             hhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence            100   00        000            001111            11  2589999999999999999887643

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.56  E-value=4.7e-14  Score=140.90  Aligned_cols=151  Identities=15%  Similarity=0.102  Sum_probs=101.6

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeE--EEEEEEECCEEEEEEEEeCCCccccccc-----------c
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAF--ITQTVCLDDVTIRFEIWDTAGQERYHTL-----------A  107 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~--~~~~i~~~~~~v~l~i~Dt~G~e~~~~l-----------~  107 (373)
                      ..++++++|.   |||||+|++++......  ..|.+.  ....+..++.  .+.+|||+|..+...+           .
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQ--KYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCe--eEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            5689999997   99999999998764322  223222  2233444554  4679999996433221           1


Q ss_pred             hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccC
Q psy18160        108 PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE  187 (373)
Q Consensus       108 ~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~  187 (373)
                      ..+++.+|++++|+|++++.+..+.. ++..+..                        .+.|+++|+||+|+.+. .  .
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~------------------------~~~~~ivv~NK~Dl~~~-~--~  301 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE------------------------AGRALVIVVNKWDLVDE-K--T  301 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH------------------------cCCcEEEEEECccCCCH-H--H
Confidence            23678999999999999887766543 3333333                        36799999999998643 1  1


Q ss_pred             HHHHH-HHHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        188 YSEGE-AYAEE----NGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       188 ~~e~~-~~~~~----~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .++.. ++...    ...+++++||+++.|++++|+.+.+....
T Consensus       302 ~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        302 MEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            11211 12222    24689999999999999999998876543

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.55  E-value=1e-14  Score=129.06  Aligned_cols=153  Identities=18%  Similarity=0.156  Sum_probs=103.7

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCc--C-------------c--------ceeeeEEEEEEEECCEEEEEEEEeCCC
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFY--P-------------Y--------LFSAAFITQTVCLDDVTIRFEIWDTAG   99 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~--~-------------~--------Tig~~~~~~~i~~~~~~v~l~i~Dt~G   99 (373)
                      +.+.++++|.   |||||+.+++...-.  .             .        |+....  ..+..+.....+.++||||
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~--~~~~~~~~~~~i~~iDtPG   79 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSF--ISFEKNENNRKITLIDTPG   79 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEE--EEEEBTESSEEEEEEEESS
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccc--ccccccccccceeeccccc
Confidence            4567888887   999999999854311  0             0        343332  2333123456789999999


Q ss_pred             cccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160        100 QERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL  179 (373)
Q Consensus       100 ~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl  179 (373)
                      +..|.......++.+|++|+|+|+.+..... ..+.+..+..                        .++|+++|.||+|+
T Consensus        80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~------------------------~~~p~ivvlNK~D~  134 (188)
T PF00009_consen   80 HEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE------------------------LGIPIIVVLNKMDL  134 (188)
T ss_dssp             SHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH------------------------TT-SEEEEEETCTS
T ss_pred             ccceeecccceecccccceeeeecccccccc-cccccccccc------------------------cccceEEeeeeccc
Confidence            9998887778899999999999998754332 2233344444                        46789999999998


Q ss_pred             CCCCcccCHHHHH-HHHHHcC------CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        180 PTSRRCVEYSEGE-AYAEENG------LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       180 ~~~~~~v~~~e~~-~~~~~~~------~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ...+.....++.. .+.+..+      ++++++||++|.|+++|++.|.+.++
T Consensus       135 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  135 IEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             hhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            7321111122222 3434432      47999999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.55  E-value=9.4e-14  Score=146.15  Aligned_cols=149  Identities=12%  Similarity=0.060  Sum_probs=110.7

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc----------chhhc-
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL----------APMYY-  111 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l----------~~~~~-  111 (373)
                      .++++++|.   |||||+|++++.+.... ..|.+...+...++.....+.+|||||...+...          ...++ 
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~   82 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL   82 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHh
Confidence            357888887   99999999998766443 5666665555555555667899999998776532          22343 


Q ss_pred             -cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160        112 -RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE  190 (373)
Q Consensus       112 -~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e  190 (373)
                       ..+|++++|+|.++.+.-   ..|..++.+                        .++|+++|+||+|+.+. +.+ ..+
T Consensus        83 ~~~aD~vI~VvDat~ler~---l~l~~ql~e------------------------~giPvIvVlNK~Dl~~~-~~i-~id  133 (772)
T PRK09554         83 SGDADLLINVVDASNLERN---LYLTLQLLE------------------------LGIPCIVALNMLDIAEK-QNI-RID  133 (772)
T ss_pred             ccCCCEEEEEecCCcchhh---HHHHHHHHH------------------------cCCCEEEEEEchhhhhc-cCc-HHH
Confidence             479999999999885532   234444444                        36899999999998653 333 345


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       191 ~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      .+++.+.+|++++++||++++|++++.+.+.+..
T Consensus       134 ~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        134 IDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             HHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence            6778888999999999999999999999887654

>PRK10218 GTP-binding protein; Provisional

Probab=99.54  E-value=1.2e-13  Score=141.75  Aligned_cols=154  Identities=12%  Similarity=0.087  Sum_probs=112.0

Q ss_pred             cEEEEEEcC---ChhHHHHHhhh--CcCcC--------------c-ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVIN--VVFYP--------------Y-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL  106 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~--~~~~~--------------~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l  106 (373)
                      ..+++++|.   |||||+++|+.  +.|..              . +.|.++..+...++.+.+.+.+|||+|+..|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            456777776   99999999996  33321              1 5677777777777667789999999999999999


Q ss_pred             chhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160        107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV  186 (373)
Q Consensus       107 ~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v  186 (373)
                      +..+++.+|++++|+|+++....+ ...++..+..                        .++|.+++.||+|+.......
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~------------------------~gip~IVviNKiD~~~a~~~~  139 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA------------------------YGLKPIVVINKVDRPGARPDW  139 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH------------------------cCCCEEEEEECcCCCCCchhH
Confidence            999999999999999998753222 2223333333                        367889999999987542222


Q ss_pred             CHHHHHHHHHH-------cCCeEEEEcCCCCC----------CHHHHHHHHHHHcc
Q psy18160        187 EYSEGEAYAEE-------NGLLFMETSAKTAM----------NVNEIFVEIAKKLP  225 (373)
Q Consensus       187 ~~~e~~~~~~~-------~~~~~~evSak~~~----------gI~~lf~~L~~~i~  225 (373)
                      ..++...+...       ..++++.+||++|.          ++..+++.++..+.
T Consensus       140 vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        140 VVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             HHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            23344444322       34679999999998          58889988888775

>KOG0072|consensus

Probab=99.54  E-value=1.8e-14  Score=117.52  Aligned_cols=152  Identities=18%  Similarity=0.186  Sum_probs=112.8

Q ss_pred             cEEEEEEc--C-ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         47 CMAQIWLK--D-RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        47 ~i~ivvlG--~-GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .+++.++|  | |||+++.|+.-++....  |+|...  ..+.+  +...+++||.+|+-..+..|+.||.+.|++|+|+
T Consensus        18 e~rililgldGaGkttIlyrlqvgevvttkPtigfnv--e~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIyVV   93 (182)
T KOG0072|consen   18 EMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNV--ETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVV   93 (182)
T ss_pred             ceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCc--ccccc--ccccceeeEccCcccccHHHHHHhcccceEEEEE
Confidence            35566665  4 99999999988877766  777543  34444  5678999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH-----HH
Q psy18160        122 DITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA-----YA  195 (373)
Q Consensus       122 D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~-----~~  195 (373)
                      |.+|+....-.. +++..+.+                     .......++|++||.|....   ....|+..     -.
T Consensus        94 Dssd~dris~a~~el~~mL~E---------------------~eLq~a~llv~anKqD~~~~---~t~~E~~~~L~l~~L  149 (182)
T KOG0072|consen   94 DSSDRDRISIAGVELYSMLQE---------------------EELQHAKLLVFANKQDYSGA---LTRSEVLKMLGLQKL  149 (182)
T ss_pred             eccchhhhhhhHHHHHHHhcc---------------------HhhcCceEEEEeccccchhh---hhHHHHHHHhChHHH
Confidence            999987655444 23333333                     23356889999999998653   23333221     12


Q ss_pred             HHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       196 ~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ++.-+.+|++||.+|+|++++++||.+.+..
T Consensus       150 k~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  150 KDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             hhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence            2233679999999999999999999987754

>KOG0084|consensus

Probab=99.54  E-value=3e-15  Score=128.74  Aligned_cols=62  Identities=31%  Similarity=0.463  Sum_probs=59.5

Q ss_pred             ccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       293 ~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..++.||++++|++|||||||+.||..+.|.+.|.+|||        +||.++++.++|+.|+|||||+|
T Consensus         5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIG--------VDf~~rt~e~~gk~iKlQIWDTA   66 (205)
T KOG0084|consen    5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIG--------VDFKIRTVELDGKTIKLQIWDTA   66 (205)
T ss_pred             ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceee--------eEEEEEEeeecceEEEEEeeecc
Confidence            456789999999999999999999999999999999999        99999999999999999999998

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.54  E-value=1.8e-13  Score=125.17  Aligned_cols=164  Identities=14%  Similarity=0.040  Sum_probs=101.7

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCccccc----c---cchhhccC
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH----T---LAPMYYRN  113 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~----~---l~~~~~~~  113 (373)
                      +++++|.   |||||++++++......     |..  .....+.+++  ..+++|||+|+.+..    .   ....++++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~--~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~   77 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLT--CVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVART   77 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCcccc--ceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhcc
Confidence            5778887   99999999998753222     322  2234555655  568999999985433    1   22346889


Q ss_pred             CcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCC-------cc----------------cccc---------------
Q psy18160        114 AQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNID-------TF----------------GRAK---------------  154 (373)
Q Consensus       114 ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~-------~~----------------~~~~---------------  154 (373)
                      +|++++|+|+++++ ..+.+.+.+...--......+       ..                ....               
T Consensus        78 ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~  157 (233)
T cd01896          78 ADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLI  157 (233)
T ss_pred             CCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEE
Confidence            99999999998865 444444443321110000000       00                0000               


Q ss_pred             -------hhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        155 -------SWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       155 -------~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                             .+.+-+. .....+|+++|+||+|+..      .+++..+++.  .+++++||+++.|++++|+.|.+.+-
T Consensus       158 ~~~~~~~~~~~~~~-~~~~y~p~iiV~NK~Dl~~------~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L~  226 (233)
T cd01896         158 REDITVDDLIDVIE-GNRVYIPCLYVYNKIDLIS------IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKLG  226 (233)
T ss_pred             ccCCCHHHHHHHHh-CCceEeeEEEEEECccCCC------HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence                   0111111 1123479999999999853      3555566553  45899999999999999999988653

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.53  E-value=6.2e-14  Score=143.85  Aligned_cols=153  Identities=12%  Similarity=0.145  Sum_probs=109.3

Q ss_pred             EEEEEcC---ChhHHHHHhhh--CcCcCc---------------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccch
Q psy18160         49 AQIWLKD---RVDCMTQIVIN--VVFYPY---------------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAP  108 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~--~~~~~~---------------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~  108 (373)
                      .++++|.   |||||+.+++.  +.+...               ..|.++..+...+..+.+.+.||||||+++|.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            4667775   99999999986  222111               345555555555544567899999999999998889


Q ss_pred             hhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160        109 MYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY  188 (373)
Q Consensus       109 ~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~  188 (373)
                      .+++.+|++++|+|+++.. ......|+..+..                        .++|+++|+||+|+.......-.
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~------------------------~~ip~IVviNKiD~~~a~~~~v~  137 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE------------------------LGLKPIVVINKIDRPSARPDEVV  137 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH------------------------CCCCEEEEEECCCCCCcCHHHHH
Confidence            9999999999999998642 3334456555544                        46789999999998654111112


Q ss_pred             HHHHHHHH-------HcCCeEEEEcCCCCC----------CHHHHHHHHHHHcch
Q psy18160        189 SEGEAYAE-------ENGLLFMETSAKTAM----------NVNEIFVEIAKKLPK  226 (373)
Q Consensus       189 ~e~~~~~~-------~~~~~~~evSak~~~----------gI~~lf~~L~~~i~~  226 (373)
                      ++...+..       ...++++.+||++|.          |++.+|+.++..+..
T Consensus       138 ~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~  192 (594)
T TIGR01394       138 DEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA  192 (594)
T ss_pred             HHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence            34444442       235789999999995          799999999988863

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.53  E-value=5.9e-14  Score=139.67  Aligned_cols=149  Identities=12%  Similarity=0.023  Sum_probs=98.3

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhC--cCc-------------------------C----c---ceeeeEEEEEEEEC
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINV--VFY-------------------------P----Y---LFSAAFITQTVCLD   86 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~--~~~-------------------------~----~---Tig~~~~~~~i~~~   86 (373)
                      +...+.++++|.   |||||+.+|+..  .+.                         +    .   .+..+.....  +.
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~--~~   81 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK--FE   81 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE--Ec
Confidence            345688999997   999999999852  111                         0    0   2223333333  34


Q ss_pred             CEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHH--HHHHHHHhhCCCCCCcccccchhHHhhhhcC
Q psy18160         87 DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK--SWVKELQRMAPPNIDTFGRAKSWVKELQRMA  164 (373)
Q Consensus        87 ~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  164 (373)
                      ...+.+.||||+|+++|.......++.+|++++|+|+++.+++....  +++..+..                       
T Consensus        82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-----------------------  138 (426)
T TIGR00483        82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART-----------------------  138 (426)
T ss_pred             cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-----------------------
Confidence            44568899999999988665556678999999999999875432111  11111111                       


Q ss_pred             CCCCeEEEEEeCCCCCCCCc---ccCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHH
Q psy18160        165 PPNIVIALAGNKADLPTSRR---CVEYSEGEAYAEENG-----LLFMETSAKTAMNVNEIF  217 (373)
Q Consensus       165 ~~~~piilVgnK~Dl~~~~~---~v~~~e~~~~~~~~~-----~~~~evSak~~~gI~~lf  217 (373)
                      ....|++||+||+|+.+...   ....+++.++++..+     ++++++||++|.||++++
T Consensus       139 ~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       139 LGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             cCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            12358999999999964211   122345666777665     579999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.52  E-value=1.6e-13  Score=135.56  Aligned_cols=158  Identities=15%  Similarity=0.142  Sum_probs=100.6

Q ss_pred             CCCCCcEEEEEEcC---ChhHHHHHhhhCcCc---Cc-----ceeeeEEEEEEE----------------EC--C----E
Q psy18160         42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFY---PY-----LFSAAFITQTVC----------------LD--D----V   88 (373)
Q Consensus        42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~---~~-----Tig~~~~~~~i~----------------~~--~----~   88 (373)
                      ......+.++++|.   |||||+.++.+....   ..     |+...+..-.+.                ++  +    .
T Consensus         4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (411)
T PRK04000          4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL   83 (411)
T ss_pred             ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence            34455689999997   999999999653111   11     444332111110                11  1    1


Q ss_pred             EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCH----hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcC
Q psy18160         89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ----DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMA  164 (373)
Q Consensus        89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~----~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  164 (373)
                      ...+.||||||+++|..........+|++++|+|++++    .+.+.+.    .+..                       
T Consensus        84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~~-----------------------  136 (411)
T PRK04000         84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDI-----------------------  136 (411)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHHH-----------------------
Confidence            35789999999988765444445567999999999864    2333222    2222                       


Q ss_pred             CCCCeEEEEEeCCCCCCCCcc-cCHHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        165 PPNIVIALAGNKADLPTSRRC-VEYSEGEAYAEEN---GLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       165 ~~~~piilVgnK~Dl~~~~~~-v~~~e~~~~~~~~---~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ....|+++|+||+|+.+.... ...+++.++++..   +.+++++||+++.|++++++.|...+..
T Consensus       137 ~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        137 IGIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             cCCCcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            112368999999999753111 1123444554432   4789999999999999999999887653

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.51  E-value=1.3e-13  Score=137.21  Aligned_cols=151  Identities=13%  Similarity=-0.008  Sum_probs=96.9

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCc---------------------------C----c-ceeeeEEEEEEEECCE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFY---------------------------P----Y-LFSAAFITQTVCLDDV   88 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~---------------------------~----~-Tig~~~~~~~i~~~~~   88 (373)
                      .+..+.++++|.   |||||+++++...-.                           +    . ..|.+.......+..+
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            445688999997   999999999832110                           0    0 2233332333344445


Q ss_pred             EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCC
Q psy18160         89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPN  167 (373)
Q Consensus        89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (373)
                      .+.+.+|||||+++|.......++.+|++++|+|++++.++... .+++..+..                       ...
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-----------------------~~~  139 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-----------------------LGI  139 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-----------------------cCC
Confidence            57899999999988865444557899999999999873222111 122222222                       122


Q ss_pred             CeEEEEEeCCCCCCCCc---ccCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHH
Q psy18160        168 IVIALAGNKADLPTSRR---CVEYSEGEAYAEENG-----LLFMETSAKTAMNVNEIF  217 (373)
Q Consensus       168 ~piilVgnK~Dl~~~~~---~v~~~e~~~~~~~~~-----~~~~evSak~~~gI~~lf  217 (373)
                      .|+++++||+|+.....   ....+++.++++..+     .+++++||++|.|+++++
T Consensus       140 ~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        140 NQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             CeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            47999999999965211   112345556666655     469999999999998744

>PRK12289 GTPase RsgA; Reviewed

Probab=99.51  E-value=5.5e-14  Score=135.37  Aligned_cols=94  Identities=17%  Similarity=0.208  Sum_probs=71.9

Q ss_pred             ccccccchhhccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160        101 ERYHTLAPMYYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL  179 (373)
Q Consensus       101 e~~~~l~~~~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl  179 (373)
                      ++-..+.+..++++|.+++|+|+.++. ++..+.+|+..+..                        .++|++||+||+||
T Consensus        77 pR~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~------------------------~~ip~ILVlNK~DL  132 (352)
T PRK12289         77 PRKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES------------------------TGLEIVLCLNKADL  132 (352)
T ss_pred             ccccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH------------------------CCCCEEEEEEchhc
Confidence            344556677799999999999998876 56677888876644                        57899999999999


Q ss_pred             CCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q psy18160        180 PTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIA  221 (373)
Q Consensus       180 ~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~  221 (373)
                      .+. .  ..+...+.++..+++++.+||+++.|++++++.|.
T Consensus       133 v~~-~--~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~~L~  171 (352)
T PRK12289        133 VSP-T--EQQQWQDRLQQWGYQPLFISVETGIGLEALLEQLR  171 (352)
T ss_pred             CCh-H--HHHHHHHHHHhcCCeEEEEEcCCCCCHHHHhhhhc
Confidence            643 1  12233344456789999999999999999988773

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.51  E-value=3.1e-13  Score=132.26  Aligned_cols=154  Identities=18%  Similarity=0.101  Sum_probs=104.8

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc----cch---hhccC
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT----LAP---MYYRN  113 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~----l~~---~~~~~  113 (373)
                      .++++|-   |||||+|++++.+....     |....+.  .+.+++ ...+.++||||..+-..    +..   ..++.
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~G--iv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r  237 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLG--VVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER  237 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEE--EEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence            4667775   99999999998764322     4433332  333332 23578999999753211    222   24778


Q ss_pred             CcEEEEEEECC---CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160        114 AQAAIIVYDIT---NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE  190 (373)
Q Consensus       114 ad~iilv~D~~---~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e  190 (373)
                      +|++++|+|++   +.+.++....|+.++..+.                   ....+.|++||+||+|+... ..+ .+.
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~-------------------~~L~~kP~IlVlNKiDl~~~-~el-~~~  296 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYS-------------------PKLAEKPRWLVFNKIDLLDE-EEA-EER  296 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHHHHHHHHhhh-------------------hhhcCCCEEEEEeCCccCCh-HHH-HHH
Confidence            99999999998   4567777777777776521                   01136799999999998653 111 233


Q ss_pred             HHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        191 GEAYAEENG--LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       191 ~~~~~~~~~--~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ..++.+..+  .+++.+||+++.||+++++.|.+.+..
T Consensus       297 l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        297 AKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             HHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence            444555544  368999999999999999999988764

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.51  E-value=2.1e-13  Score=116.81  Aligned_cols=144  Identities=15%  Similarity=0.136  Sum_probs=93.6

Q ss_pred             EEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcc----------cccccchhhcc-
Q psy18160         50 QIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQE----------RYHTLAPMYYR-  112 (373)
Q Consensus        50 ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e----------~~~~l~~~~~~-  112 (373)
                      ++++|.   |||||++.+++..+...   +.+.+.....+..++   .+.+|||+|..          .+..+...|+. 
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~   78 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN   78 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence            678887   99999999996555443   555554444444444   78899999943          34444455554 


Q ss_pred             --CCcEEEEEEECCCHhhH--HHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc-ccC
Q psy18160        113 --NAQAAIIVYDITNQDTF--GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR-CVE  187 (373)
Q Consensus       113 --~ad~iilv~D~~~~~Sf--~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~-~v~  187 (373)
                        ..+++++++|..+..+.  ..+.+|+.   .                        ...|+++|+||+|+..... ...
T Consensus        79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~---~------------------------~~~~vi~v~nK~D~~~~~~~~~~  131 (170)
T cd01876          79 RENLKGVVLLIDSRHGPTEIDLEMLDWLE---E------------------------LGIPFLVVLTKADKLKKSELAKA  131 (170)
T ss_pred             ChhhhEEEEEEEcCcCCCHhHHHHHHHHH---H------------------------cCCCEEEEEEchhcCChHHHHHH
Confidence              45789999999865322  22333332   2                        2468999999999854311 111


Q ss_pred             HHHHHHHHH--HcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        188 YSEGEAYAE--ENGLLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       188 ~~e~~~~~~--~~~~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                      ........+  ....+++++||+++.+++++++.|.+.
T Consensus       132 ~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         132 LKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             HHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence            122222222  234579999999999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.50  E-value=1.6e-13  Score=135.63  Aligned_cols=157  Identities=15%  Similarity=0.120  Sum_probs=102.0

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcC---c-----ceeeeEEEEE----------------EEECC------EEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYP---Y-----LFSAAFITQT----------------VCLDD------VTIRF   92 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~---~-----Tig~~~~~~~----------------i~~~~------~~v~l   92 (373)
                      ..+.++++|.   |||||++++.+.....   .     |+...|..-.                ...++      ....+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            3578899997   9999999997642221   1     4443322110                00011      14678


Q ss_pred             EEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEE
Q psy18160         93 EIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIAL  172 (373)
Q Consensus        93 ~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piil  172 (373)
                      .+|||||+++|...+...+..+|++++|+|+++........+.+..+..                       ....|+++
T Consensus        83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-----------------------~gi~~iIV  139 (406)
T TIGR03680        83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-----------------------IGIKNIVI  139 (406)
T ss_pred             EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-----------------------cCCCeEEE
Confidence            9999999999987777777889999999999864311111222222222                       12246899


Q ss_pred             EEeCCCCCCCCc-ccCHHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        173 AGNKADLPTSRR-CVEYSEGEAYAEEN---GLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       173 VgnK~Dl~~~~~-~v~~~e~~~~~~~~---~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      |+||+|+.+... ....+++.++.+..   +++++++||++|.|++++++.|...+.
T Consensus       140 vvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       140 VQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             EEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            999999975311 11233444444443   578999999999999999999988665

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.50  E-value=3.2e-13  Score=128.80  Aligned_cols=191  Identities=19%  Similarity=0.149  Sum_probs=130.0

Q ss_pred             Cccccchhhhhh---hhhhhhhhhhhccCCCCcccc-cc-CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-----
Q psy18160          6 GTCGSTLQTIEY---ALTVRVLKLKTQIPKGNWFSM-MS-GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY-----   72 (373)
Q Consensus         6 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----   72 (373)
                      |+.|+++..+|.   .++.|+..++.++........ .. .+.......+.++|-   |||||+|++++......     
T Consensus       146 G~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFA  225 (411)
T COG2262         146 GFRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFA  225 (411)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccc
Confidence            788899998887   677788888888765443332 22 233445555666664   99999999998765533     


Q ss_pred             ceeeeEEEEEEEECCEEEEEEEEeCCCccccc--ccchhh------ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCC
Q psy18160         73 LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH--TLAPMY------YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP  144 (373)
Q Consensus        73 Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~--~l~~~~------~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~  144 (373)
                      |...  ..+.+.+.+ ...+.+-||.|--+.-  .+...|      ...||.++.|+|++++...+.+..-.+.+.+   
T Consensus       226 TLdp--ttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~e---  299 (411)
T COG2262         226 TLDP--TTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAE---  299 (411)
T ss_pred             cccC--ceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHH---
Confidence            5543  356677764 2346678999953221  122222      4589999999999999776666655555555   


Q ss_pred             CCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                                        ....++|+|+|.||.|+....      +....+....-..+.+||++|.|++.|.+.|...+
T Consensus       300 ------------------l~~~~~p~i~v~NKiD~~~~~------~~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l  355 (411)
T COG2262         300 ------------------IGADEIPIILVLNKIDLLEDE------EILAELERGSPNPVFISAKTGEGLDLLRERIIELL  355 (411)
T ss_pred             ------------------cCCCCCCEEEEEecccccCch------hhhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHh
Confidence                              455679999999999976541      11122222211588999999999999999999888


Q ss_pred             ch
Q psy18160        225 PK  226 (373)
Q Consensus       225 ~~  226 (373)
                      ..
T Consensus       356 ~~  357 (411)
T COG2262         356 SG  357 (411)
T ss_pred             hh
Confidence            63

>PRK12288 GTPase RsgA; Reviewed

Probab=99.49  E-value=6.5e-14  Score=134.85  Aligned_cols=88  Identities=15%  Similarity=0.103  Sum_probs=69.0

Q ss_pred             ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160        111 YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE  190 (373)
Q Consensus       111 ~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e  190 (373)
                      ..++|.+++|++++...++..+.+|+..+..                        .++|++||+||+||.+........+
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~------------------------~~i~~VIVlNK~DL~~~~~~~~~~~  173 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET------------------------LGIEPLIVLNKIDLLDDEGRAFVNE  173 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh------------------------cCCCEEEEEECccCCCcHHHHHHHH
Confidence            4679999999999888899999999876544                        4689999999999965311112233


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       191 ~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~  222 (373)
                      ..+.++..+++++++||+++.|++++++.|..
T Consensus       174 ~~~~y~~~g~~v~~vSA~tg~GideL~~~L~~  205 (347)
T PRK12288        174 QLDIYRNIGYRVLMVSSHTGEGLEELEAALTG  205 (347)
T ss_pred             HHHHHHhCCCeEEEEeCCCCcCHHHHHHHHhh
Confidence            34445667899999999999999999988753

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.47  E-value=2.8e-13  Score=121.88  Aligned_cols=104  Identities=24%  Similarity=0.149  Sum_probs=68.6

Q ss_pred             EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160         89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI  168 (373)
Q Consensus        89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (373)
                      ...+.+|||||+++|.......++.+|++++|+|+++...-. ..+....+..                       ....
T Consensus        76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~-----------------------~~~~  131 (208)
T cd04166          76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSL-----------------------LGIR  131 (208)
T ss_pred             CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHH-----------------------cCCC
Confidence            346789999999888665666788999999999998753211 1111122222                       1124


Q ss_pred             eEEEEEeCCCCCCCCcc---cCHHHHHHHHHHcCC---eEEEEcCCCCCCHHHH
Q psy18160        169 VIALAGNKADLPTSRRC---VEYSEGEAYAEENGL---LFMETSAKTAMNVNEI  216 (373)
Q Consensus       169 piilVgnK~Dl~~~~~~---v~~~e~~~~~~~~~~---~~~evSak~~~gI~~l  216 (373)
                      ++++|+||+|+....+.   ...++..++++.+++   +++++||+++.|+++.
T Consensus       132 ~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         132 HVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             cEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            57889999998643111   112344556666664   5899999999998853

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>KOG0094|consensus

Probab=99.47  E-value=1.5e-14  Score=124.02  Aligned_cols=59  Identities=36%  Similarity=0.531  Sum_probs=57.1

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|+.+||||+|+.||+.+.|...|.+|||        +||.++++.+.|++++|||||.|
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIG--------iDFlskt~~l~d~~vrLQlWDTA   79 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIG--------IDFLSKTMYLEDRTVRLQLWDTA   79 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceee--------eEEEEEEEEEcCcEEEEEEEecc
Confidence            358999999999999999999999999999999999        99999999999999999999998

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.45  E-value=1.4e-12  Score=119.53  Aligned_cols=107  Identities=13%  Similarity=0.064  Sum_probs=75.7

Q ss_pred             EEEEcC---ChhHHHHHhhhCcCc--------------C---c--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc
Q psy18160         50 QIWLKD---RVDCMTQIVINVVFY--------------P---Y--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA  107 (373)
Q Consensus        50 ivvlG~---GKTsLl~rl~~~~~~--------------~---~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~  107 (373)
                      ++++|.   |||||+++++...-.              +   .  ..|..+......+..+...+.+|||+|+.+|...+
T Consensus         2 i~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~   81 (237)
T cd04168           2 IGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEV   81 (237)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHH
Confidence            567775   999999999863110              0   0  22333333334444455778999999999998888


Q ss_pred             hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160        108 PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT  181 (373)
Q Consensus       108 ~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  181 (373)
                      ..+++.+|++++|+|.++.... ....++..+..                        .++|+++++||+|+..
T Consensus        82 ~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~------------------------~~~P~iivvNK~D~~~  130 (237)
T cd04168          82 ERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK------------------------LNIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH------------------------cCCCEEEEEECccccC
Confidence            8999999999999999886543 23344444443                        3679999999999864

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.45  E-value=7.9e-13  Score=135.65  Aligned_cols=147  Identities=19%  Similarity=0.142  Sum_probs=96.8

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc-------ceeeeEEEEEEEE--CCEEE----------EEEEEeCCCcccccc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY-------LFSAAFITQTVCL--DDVTI----------RFEIWDTAGQERYHT  105 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~-------Tig~~~~~~~i~~--~~~~v----------~l~i~Dt~G~e~~~~  105 (373)
                      ..++++|.   |||||++++.+..+...       ++|.++.......  .+..+          .+.+|||||++.|..
T Consensus         7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~   86 (586)
T PRK04004          7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTN   86 (586)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHH
Confidence            46788886   99999999987654332       4444432211100  11111          168999999999999


Q ss_pred             cchhhccCCcEEEEEEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160        106 LAPMYYRNAQAAIIVYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       106 l~~~~~~~ad~iilv~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  182 (373)
                      ++...++.+|++++|+|+++   +.+++.+..    +..                        .++|+++++||+|+...
T Consensus        87 ~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~------------------------~~vpiIvviNK~D~~~~  138 (586)
T PRK04004         87 LRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR------------------------RKTPFVVAANKIDRIPG  138 (586)
T ss_pred             HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH------------------------cCCCEEEEEECcCCchh
Confidence            99888999999999999997   566655431    222                        36799999999998521


Q ss_pred             Ccc---cC--------HH-----------HHHHHHHHc---------------CCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        183 RRC---VE--------YS-----------EGEAYAEEN---------------GLLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       183 ~~~---v~--------~~-----------e~~~~~~~~---------------~~~~~evSak~~~gI~~lf~~L~~  222 (373)
                      ...   ..        ..           +........               ..+++++||++|+|++++++.+..
T Consensus       139 ~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        139 WKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             hhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence            000   00        00           010111111               257999999999999999988764

>cd04167 Snu114p Snu114p subfamily

Probab=99.45  E-value=6.9e-13  Score=119.74  Aligned_cols=107  Identities=15%  Similarity=0.145  Sum_probs=76.5

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc--------------------ceeeeEEEEEEEE-----CCEEEEEEEEeCCCc
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY--------------------LFSAAFITQTVCL-----DDVTIRFEIWDTAGQ  100 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~--------------------Tig~~~~~~~i~~-----~~~~v~l~i~Dt~G~  100 (373)
                      .++++|.   |||||+++|+.......                    ..|.++....+.+     ++..+.+.+|||+|+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            3677776   99999999987543210                    2233332222222     356789999999999


Q ss_pred             ccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCC
Q psy18160        101 ERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP  180 (373)
Q Consensus       101 e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~  180 (373)
                      ++|......+++.+|++++|+|+++..++.. .+|+..+..                        .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~------------------------~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL------------------------EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH------------------------cCCCEEEEEECcccC
Confidence            9998888889999999999999988766543 334444332                        358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.43  E-value=1.8e-12  Score=133.69  Aligned_cols=145  Identities=14%  Similarity=0.061  Sum_probs=97.2

Q ss_pred             EEEEcC---ChhHHHHHhhhC---cCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         50 QIWLKD---RVDCMTQIVINV---VFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        50 ivvlG~---GKTsLl~rl~~~---~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ++++|.   |||||+++|++.   .+.+.     |+...|  ..+...+ ...+.+|||||+++|.......+.++|+++
T Consensus         3 i~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~--~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          3 IATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGY--AYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeee--EEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            556665   999999999963   33332     444333  2232322 234789999999998766666788999999


Q ss_pred             EEEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCCCcc-cCHHHHHH
Q psy18160        119 IVYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTSRRC-VEYSEGEA  193 (373)
Q Consensus       119 lv~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~~~~-v~~~e~~~  193 (373)
                      +|+|+++   +.+.+.+.    .+..                        .++| ++||+||+|+.+..+. ...+++.+
T Consensus        80 LVVda~eg~~~qT~ehl~----il~~------------------------lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~  131 (614)
T PRK10512         80 LVVACDDGVMAQTREHLA----ILQL------------------------TGNPMLTVALTKADRVDEARIAEVRRQVKA  131 (614)
T ss_pred             EEEECCCCCcHHHHHHHH----HHHH------------------------cCCCeEEEEEECCccCCHHHHHHHHHHHHH
Confidence            9999987   33444332    2222                        1234 6899999999653111 11234455


Q ss_pred             HHHHcC---CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        194 YAEENG---LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       194 ~~~~~~---~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +....+   .+++++||++|.|++++++.|.....
T Consensus       132 ~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~  166 (614)
T PRK10512        132 VLREYGFAEAKLFVTAATEGRGIDALREHLLQLPE  166 (614)
T ss_pred             HHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence            555544   68999999999999999999986544

>KOG1707|consensus

Probab=99.42  E-value=4.1e-13  Score=132.19  Aligned_cols=163  Identities=17%  Similarity=0.146  Sum_probs=115.5

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      .....++||++|+   |||||+-.++.++|.+. ..-.+.......+..+.+-..|.||+..+.-+.....-++.||++.
T Consensus         5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence            3445689999998   99999999999999987 1111111111223345566889999866554444566789999999


Q ss_pred             EEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH-HHHHHH
Q psy18160        119 IVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE-GEAYAE  196 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e-~~~~~~  196 (373)
                      ++|+++++.+.+.+. .|+..++...                   ....++|+||||||+|+..... .+.+. ...+..
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~-------------------~~~~~~PVILvGNK~d~~~~~~-~s~e~~~~pim~  144 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLF-------------------GDYHETPVILVGNKSDNGDNEN-NSDEVNTLPIMI  144 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhccc-------------------CCCccCCEEEEeeccCCccccc-cchhHHHHHHHH
Confidence            999999999999997 7999888721                   1235899999999999976522 22222 222222


Q ss_pred             HcC-C-eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        197 ENG-L-LFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       197 ~~~-~-~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++. + ..++|||++-.++.++|...-+.+.
T Consensus       145 ~f~EiEtciecSA~~~~n~~e~fYyaqKaVi  175 (625)
T KOG1707|consen  145 AFAEIETCIECSALTLANVSELFYYAQKAVI  175 (625)
T ss_pred             HhHHHHHHHhhhhhhhhhhHhhhhhhhheee
Confidence            222 2 3789999999999999987765543

>KOG0462|consensus

Probab=99.42  E-value=3.5e-12  Score=124.77  Aligned_cols=155  Identities=17%  Similarity=0.157  Sum_probs=110.8

Q ss_pred             cEEEEEEcC-ChhHHHHHhhhCcC-----------cCc-----ceeeeEEEEEEE---ECCEEEEEEEEeCCCccccccc
Q psy18160         47 CMAQIWLKD-RVDCMTQIVINVVF-----------YPY-----LFSAAFITQTVC---LDDVTIRFEIWDTAGQERYHTL  106 (373)
Q Consensus        47 ~i~ivvlG~-GKTsLl~rl~~~~~-----------~~~-----Tig~~~~~~~i~---~~~~~v~l~i~Dt~G~e~~~~l  106 (373)
                      -+-||.-.+ |||||..|++.-.-           .+.     ..|.+...++..   .+|..+.++++||||+-.|...
T Consensus        62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E  141 (650)
T KOG0462|consen   62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE  141 (650)
T ss_pred             ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence            355666667 99999999985311           111     233333333322   2477899999999999999998


Q ss_pred             chhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160        107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV  186 (373)
Q Consensus       107 ~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v  186 (373)
                      ....+.-+||+++|+|++...--+.+..++..++.                         +..+|.|.||+|++.....-
T Consensus       142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-------------------------~L~iIpVlNKIDlp~adpe~  196 (650)
T KOG0462|consen  142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA-------------------------GLAIIPVLNKIDLPSADPER  196 (650)
T ss_pred             ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-------------------------CCeEEEeeeccCCCCCCHHH
Confidence            88899999999999999987666666655555443                         67899999999998752111


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        187 EYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       187 ~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      -..+..++.....-+.+.+|||+|.|++++++++++.++.
T Consensus       197 V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPp  236 (650)
T KOG0462|consen  197 VENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPP  236 (650)
T ss_pred             HHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence            1122333333344579999999999999999999998864

>cd01855 YqeH YqeH

Probab=99.41  E-value=5.2e-13  Score=118.34  Aligned_cols=94  Identities=23%  Similarity=0.168  Sum_probs=65.8

Q ss_pred             ccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160        103 YHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       103 ~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  182 (373)
                      +..++..+++++|++++|+|++++..     .|...+..                      ...+.|+++|+||+|+...
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~----------------------~~~~~~~ilV~NK~Dl~~~   76 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRL----------------------FGGNNPVILVGNKIDLLPK   76 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHH----------------------hcCCCcEEEEEEchhcCCC
Confidence            46778889999999999999987541     12222211                      1246799999999998653


Q ss_pred             CcccCHHHHHHHH-----HHcCC---eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        183 RRCVEYSEGEAYA-----EENGL---LFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       183 ~~~v~~~e~~~~~-----~~~~~---~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                        ....+....+.     +..+.   +++++||+++.|++++++.|.+.+.
T Consensus        77 --~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          77 --DKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             --CCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence              23333343343     33343   6899999999999999999987653

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG1159 Era GTPase [General function prediction only]

Probab=99.41  E-value=4.4e-12  Score=116.64  Aligned_cols=152  Identities=13%  Similarity=0.053  Sum_probs=102.0

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc--------cch
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT--------LAP  108 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~--------l~~  108 (373)
                      ..+-+++++|.   |||||+|++++.+.+..     |..  ...+-+... +...+.+.||||..+-..        ...
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR--~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~   80 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTR--NRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAAR   80 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhh--hheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence            45678999998   99999999999998876     221  112233333 356788999999643222        234


Q ss_pred             hhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160        109 MYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY  188 (373)
Q Consensus       109 ~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~  188 (373)
                      ..+.++|+++||.|+++.-.-  -.+|+-+..+                       ..+.|++++.||.|...... . .
T Consensus        81 ~sl~dvDlilfvvd~~~~~~~--~d~~il~~lk-----------------------~~~~pvil~iNKID~~~~~~-~-l  133 (298)
T COG1159          81 SALKDVDLILFVVDADEGWGP--GDEFILEQLK-----------------------KTKTPVILVVNKIDKVKPKT-V-L  133 (298)
T ss_pred             HHhccCcEEEEEEeccccCCc--cHHHHHHHHh-----------------------hcCCCeEEEEEccccCCcHH-H-H
Confidence            457899999999999874322  2223222222                       13679999999999876411 1 1


Q ss_pred             HHHHHHHH-HcC-CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        189 SEGEAYAE-ENG-LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       189 ~e~~~~~~-~~~-~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ....+++. ... ...+++||++|.|++.+.+.+...+.+
T Consensus       134 ~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         134 LKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE  173 (298)
T ss_pred             HHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence            22223332 222 368999999999999999999988864

>PRK00098 GTPase RsgA; Reviewed

Probab=99.40  E-value=3.6e-13  Score=127.66  Aligned_cols=84  Identities=21%  Similarity=0.151  Sum_probs=65.4

Q ss_pred             ccCCcEEEEEEECCCHhhHHH-HHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160        111 YRNAQAAIIVYDITNQDTFGR-AKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS  189 (373)
Q Consensus       111 ~~~ad~iilv~D~~~~~Sf~~-i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~  189 (373)
                      ++++|++++|+|++++.++.. +.+|+..+..                        .++|+++|+||+|+.+. . ...+
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~------------------------~~ip~iIVlNK~DL~~~-~-~~~~  131 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA------------------------NGIKPIIVLNKIDLLDD-L-EEAR  131 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH------------------------CCCCEEEEEEhHHcCCC-H-HHHH
Confidence            589999999999988875444 5678776654                        47899999999999642 1 2233


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q psy18160        190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEI  220 (373)
Q Consensus       190 e~~~~~~~~~~~~~evSak~~~gI~~lf~~L  220 (373)
                      +..+.++..+++++++||+++.|++++++.+
T Consensus       132 ~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~l  162 (298)
T PRK00098        132 ELLALYRAIGYDVLELSAKEGEGLDELKPLL  162 (298)
T ss_pred             HHHHHHHHCCCeEEEEeCCCCccHHHHHhhc
Confidence            4455666778999999999999999998765

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.39  E-value=1.3e-11  Score=119.06  Aligned_cols=151  Identities=18%  Similarity=0.198  Sum_probs=112.5

Q ss_pred             cEEEEEEcC-ChhHHHHHhhhCcC-----------cCc---------ceeeeEEEEEEEE-CCEEEEEEEEeCCCccccc
Q psy18160         47 CMAQIWLKD-RVDCMTQIVINVVF-----------YPY---------LFSAAFITQTVCL-DDVTIRFEIWDTAGQERYH  104 (373)
Q Consensus        47 ~i~ivvlG~-GKTsLl~rl~~~~~-----------~~~---------Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~~  104 (373)
                      -+-|+.-.+ |||||..|++...-           .+.         |+-..-..-.+.. +|+.+.++++||||+-.|.
T Consensus        11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs   90 (603)
T COG0481          11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS   90 (603)
T ss_pred             ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence            345667777 99999999986421           111         3333322222332 6689999999999999998


Q ss_pred             ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc
Q psy18160        105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR  184 (373)
Q Consensus       105 ~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~  184 (373)
                      -.....+..|.|+++|+|++..-.-+.+...+..+..                         +..++-|.||.||+..  
T Consensus        91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-------------------------~LeIiPViNKIDLP~A--  143 (603)
T COG0481          91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-------------------------NLEIIPVLNKIDLPAA--  143 (603)
T ss_pred             EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-------------------------CcEEEEeeecccCCCC--
Confidence            8888889999999999999987666666666666554                         6788999999999764  


Q ss_pred             ccCHHH-HHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        185 CVEYSE-GEAYAEENGLL---FMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       185 ~v~~~e-~~~~~~~~~~~---~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                        +++. .++...-.|++   .+.+|||+|.||+++++.|+..++.
T Consensus       144 --dpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~  187 (603)
T COG0481         144 --DPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP  187 (603)
T ss_pred             --CHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence              3333 34455556764   7899999999999999999998874

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.39  E-value=5.8e-13  Score=125.60  Aligned_cols=86  Identities=19%  Similarity=0.109  Sum_probs=68.4

Q ss_pred             hhccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccC
Q psy18160        109 MYYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE  187 (373)
Q Consensus       109 ~~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~  187 (373)
                      ..++++|.+++|+|++++. ++..+.+|+..+..                        .++|+++|+||+||.+.   ..
T Consensus        74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~------------------------~~ip~iIVlNK~DL~~~---~~  126 (287)
T cd01854          74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA------------------------AGIEPVIVLTKADLLDD---EE  126 (287)
T ss_pred             eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH------------------------cCCCEEEEEEHHHCCCh---HH
Confidence            3488999999999999988 88999999887765                        46899999999999653   11


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q psy18160        188 YSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIA  221 (373)
Q Consensus       188 ~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~  221 (373)
                      ......++...+++++++||+++.|+++++..|.
T Consensus       127 ~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~L~  160 (287)
T cd01854         127 EELELVEALALGYPVLAVSAKTGEGLDELREYLK  160 (287)
T ss_pred             HHHHHHHHHhCCCeEEEEECCCCccHHHHHhhhc
Confidence            1223344556789999999999999999987663

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.37  E-value=9.4e-12  Score=120.52  Aligned_cols=153  Identities=15%  Similarity=0.084  Sum_probs=106.7

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeE--EEEEEEECCEEEEEEEEeCCCcc----------cccccc
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAF--ITQTVCLDDVTIRFEIWDTAGQE----------RYHTLA  107 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~--~~~~i~~~~~~v~l~i~Dt~G~e----------~~~~l~  107 (373)
                      .+.++++++|.   |||||+|++++.+-...  ..|.+.  -...++.+++.  +.++||+|.-          .|....
T Consensus       176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~r  253 (444)
T COG1160         176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVAR  253 (444)
T ss_pred             CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehh
Confidence            36799999997   99999999999976665  333333  33455556665  5688999953          332221


Q ss_pred             -hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160        108 -PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV  186 (373)
Q Consensus       108 -~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v  186 (373)
                       ...+..+|.+++|.|.+.+-+-++.. ....+.+                        .+.+++||.||+|+.+. +..
T Consensus       254 t~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~------------------------~g~~~vIvvNKWDl~~~-~~~  307 (444)
T COG1160         254 TLKAIERADVVLLVIDATEGISEQDLR-IAGLIEE------------------------AGRGIVIVVNKWDLVEE-DEA  307 (444)
T ss_pred             hHhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH------------------------cCCCeEEEEEccccCCc-hhh
Confidence             23467899999999999877655443 3344444                        46789999999998764 334


Q ss_pred             CHHHHHHHHHH----c-CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        187 EYSEGEAYAEE----N-GLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       187 ~~~e~~~~~~~----~-~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ..++.++..+.    . ..+.+.+||+++.+++++|+.+.....
T Consensus       308 ~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         308 TMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             HHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence            44444332222    2 257899999999999999999876554

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.36  E-value=1.4e-11  Score=109.55  Aligned_cols=142  Identities=15%  Similarity=0.095  Sum_probs=92.2

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhC-------c---Cc-----Cc--ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINV-------V---FY-----PY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL  106 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~-------~---~~-----~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l  106 (373)
                      .+.++++|.   |||||+++++..       .   +.     +.  ..|.+.....+.+..+...+.+.||||+..|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            367889997   999999999853       0   00     00  2333333334444444567889999999888766


Q ss_pred             chhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCCCcc
Q psy18160        107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTSRRC  185 (373)
Q Consensus       107 ~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~~~~  185 (373)
                      ....++.+|++++|+|+.....-. ..+.+..+..                        .++| ++++.||+|+......
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~------------------------~~~~~iIvviNK~D~~~~~~~  136 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ------------------------VGVPYIVVFLNKADMVDDEEL  136 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH------------------------cCCCcEEEEEeCCCCCCcHHH
Confidence            667788999999999997643211 2223333333                        3455 7899999998643111


Q ss_pred             --cCHHHHHHHHHHcC-----CeEEEEcCCCCCCH
Q psy18160        186 --VEYSEGEAYAEENG-----LLFMETSAKTAMNV  213 (373)
Q Consensus       186 --v~~~e~~~~~~~~~-----~~~~evSak~~~gI  213 (373)
                        ...+++.++....+     .+++++||++|.|+
T Consensus       137 ~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         137 LELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence              11234555555554     57999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.36  E-value=2.3e-12  Score=116.89  Aligned_cols=104  Identities=20%  Similarity=0.180  Sum_probs=66.3

Q ss_pred             EEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhh---HH---HHHHHHHHHHhhCCCCCCcccccchhHHhhh
Q psy18160         88 VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT---FG---RAKSWVKELQRMAPPNIDTFGRAKSWVKELQ  161 (373)
Q Consensus        88 ~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~S---f~---~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                      ....+.+|||+|+..|.......++.+|++++|+|+++...   |.   ...+.+.....                    
T Consensus        75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~--------------------  134 (219)
T cd01883          75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART--------------------  134 (219)
T ss_pred             CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH--------------------
Confidence            44678999999998776655566788999999999987421   11   11111111212                    


Q ss_pred             hcCCCCCeEEEEEeCCCCCCCC-cccC----HHHHHHHHHHcC-----CeEEEEcCCCCCCHH
Q psy18160        162 RMAPPNIVIALAGNKADLPTSR-RCVE----YSEGEAYAEENG-----LLFMETSAKTAMNVN  214 (373)
Q Consensus       162 ~~~~~~~piilVgnK~Dl~~~~-~~v~----~~e~~~~~~~~~-----~~~~evSak~~~gI~  214 (373)
                         ....|+++|+||+|+.... ....    .+++..+.+..+     ++++++||++|.||+
T Consensus       135 ---~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         135 ---LGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             ---cCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence               1236899999999997320 0011    122233344443     569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.36  E-value=9.8e-12  Score=122.52  Aligned_cols=142  Identities=14%  Similarity=0.049  Sum_probs=90.4

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhC-------cC---------cCc-ceeeeEEEEEEEECCEEEEEEEEeCCCccccc
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINV-------VF---------YPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH  104 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~-------~~---------~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~  104 (373)
                      ...+.++++|.   |||||+++|++.       .+         ... ..|.+.....+.++.+...+.||||||+++|.
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~   89 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV   89 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence            44688899997   999999999742       00         011 23333333445555555678999999999886


Q ss_pred             ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCCC
Q psy18160        105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTSR  183 (373)
Q Consensus       105 ~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~~  183 (373)
                      .........+|++++|+|+++....+. .+.+..+..                        .++| ++++.||+|+.+..
T Consensus        90 ~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~------------------------~gi~~iIvvvNK~Dl~~~~  144 (394)
T TIGR00485        90 KNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ------------------------VGVPYIVVFLNKCDMVDDE  144 (394)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH------------------------cCCCEEEEEEEecccCCHH
Confidence            544445567899999999987322221 122223333                        2455 45789999986531


Q ss_pred             ccc--CHHHHHHHHHHcC-----CeEEEEcCCCCC
Q psy18160        184 RCV--EYSEGEAYAEENG-----LLFMETSAKTAM  211 (373)
Q Consensus       184 ~~v--~~~e~~~~~~~~~-----~~~~evSak~~~  211 (373)
                      ...  ..+++.++++.++     ++++++||+++.
T Consensus       145 ~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       145 ELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence            111  1235666666665     689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.34  E-value=1.5e-11  Score=121.22  Aligned_cols=157  Identities=15%  Similarity=0.107  Sum_probs=101.3

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCc-------C---c-----C-c-ceeeeEEEEEEEECCEEEEEEEEeCCCcccc
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVV-------F---Y-----P-Y-LFSAAFITQTVCLDDVTIRFEIWDTAGQERY  103 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~-------~---~-----~-~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~  103 (373)
                      ....+.++++|.   |||||++++++..       +   .     + . ..|.+.....+.+..+...+.++||||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            345688999997   9999999998631       1   0     0 1 2333333334445444556789999999888


Q ss_pred             cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCC
Q psy18160        104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTS  182 (373)
Q Consensus       104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~  182 (373)
                      .......+..+|++++|+|+++...-. ..+.+..+..                        .++| ++++.||+|+.+.
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~------------------------~g~~~~IvviNK~D~~~~  143 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQ------------------------VGVPYLVVFLNKVDLVDD  143 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH------------------------cCCCEEEEEEEecCCcch
Confidence            655555567889999999998642211 1222333333                        2466 7789999998643


Q ss_pred             Cccc--CHHHHHHHHHHcC-----CeEEEEcCCCCC--------CHHHHHHHHHHHcc
Q psy18160        183 RRCV--EYSEGEAYAEENG-----LLFMETSAKTAM--------NVNEIFVEIAKKLP  225 (373)
Q Consensus       183 ~~~v--~~~e~~~~~~~~~-----~~~~evSak~~~--------gI~~lf~~L~~~i~  225 (373)
                      ....  -.++..++.+..+     .+++++||++|.        ++.++++.|.+.+.
T Consensus       144 ~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        144 EELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            1111  1234555555555     479999999983        57888888877664

>KOG0098|consensus

Probab=99.34  E-value=3.5e-13  Score=114.85  Aligned_cols=62  Identities=24%  Similarity=0.431  Sum_probs=58.8

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHHH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMM  364 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~~  364 (373)
                      ++.+|++++|+.|||||||+.||+++.|...|+.|||        ++|-.+++.||+++|+|||||+|-|
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiG--------vefg~r~~~id~k~IKlqiwDtaGq   65 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIG--------VEFGARMVTIDGKQIKLQIWDTAGQ   65 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceee--------eeeceeEEEEcCceEEEEEEecCCc
Confidence            4679999999999999999999999999999999999        9999999999999999999999854

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.34  E-value=9.8e-12  Score=113.03  Aligned_cols=107  Identities=15%  Similarity=0.066  Sum_probs=69.6

Q ss_pred             EEEEEEeCCCcccccccchhhcc--CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCC
Q psy18160         90 IRFEIWDTAGQERYHTLAPMYYR--NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPN  167 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~l~~~~~~--~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (373)
                      ..+.+.||||+++|.......+.  .+|++++|+|+.....- ...+++..+..                        .+
T Consensus        84 ~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~------------------------~~  138 (224)
T cd04165          84 KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALA------------------------LN  138 (224)
T ss_pred             cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHH------------------------cC
Confidence            46789999999988654433343  68999999998765432 22234444443                        35


Q ss_pred             CeEEEEEeCCCCCCCCc-ccCHHHHHHHHHH--------------------------cCCeEEEEcCCCCCCHHHHHHHH
Q psy18160        168 IVIALAGNKADLPTSRR-CVEYSEGEAYAEE--------------------------NGLLFMETSAKTAMNVNEIFVEI  220 (373)
Q Consensus       168 ~piilVgnK~Dl~~~~~-~v~~~e~~~~~~~--------------------------~~~~~~evSak~~~gI~~lf~~L  220 (373)
                      +|+++|.||+|+.+..+ ....++..++.+.                          ...|+|.+||.+|+|++++...|
T Consensus       139 ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L  218 (224)
T cd04165         139 IPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFL  218 (224)
T ss_pred             CCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHH
Confidence            78999999999854311 1112222222221                          12389999999999999998766


Q ss_pred             H
Q psy18160        221 A  221 (373)
Q Consensus       221 ~  221 (373)
                      .
T Consensus       219 ~  219 (224)
T cd04165         219 N  219 (224)
T ss_pred             H
Confidence            3

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.33  E-value=7.5e-12  Score=121.51  Aligned_cols=148  Identities=17%  Similarity=0.159  Sum_probs=104.2

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--cee--eeEEEEEEEECCEEEEEEEEeCCCcccccccc--------hhh
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFS--AAFITQTVCLDDVTIRFEIWDTAGQERYHTLA--------PMY  110 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig--~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~--------~~~  110 (373)
                      +-++++++|.   |||||+|.+++.+-...  -.|  .|.....+.++|  +.+.+.||+|.-+-....        ...
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            4478899997   99999999999987776  222  355566677777  557899999975444332        234


Q ss_pred             ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160        111 YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE  190 (373)
Q Consensus       111 ~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e  190 (373)
                      +++||.+++|+|.+.+.+-.+.. .+.   .                      ...+.|+++|.||.||.....   .. 
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~-~~~---~----------------------~~~~~~~i~v~NK~DL~~~~~---~~-  343 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLA-LIE---L----------------------LPKKKPIIVVLNKADLVSKIE---LE-  343 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHH-HHH---h----------------------cccCCCEEEEEechhcccccc---cc-
Confidence            78999999999999853222221 111   1                      235789999999999976511   11 


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       191 ~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                        .+.-..+.+++.+||++++|++.|.+.|.+.+...
T Consensus       344 --~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         344 --SEKLANGDAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             --hhhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence              11112245789999999999999999998877644

>KOG0078|consensus

Probab=99.33  E-value=8e-13  Score=115.38  Aligned_cols=63  Identities=32%  Similarity=0.429  Sum_probs=59.9

Q ss_pred             ccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       293 ~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      +.+..+|++++|+++|||||++.||..++|...|..|||        +||..+++.++|++|+|||||.|-
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiG--------IDFk~kti~l~g~~i~lQiWDtaG   70 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIG--------IDFKIKTIELDGKKIKLQIWDTAG   70 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEE--------EEEEEEEEEeCCeEEEEEEEEccc
Confidence            456789999999999999999999999999999999999        999999999999999999999984

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.32  E-value=1.6e-11  Score=111.35  Aligned_cols=118  Identities=9%  Similarity=0.071  Sum_probs=80.5

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCc------------Cc---------ceeeeEEEEEEEEC--------CEEEEEEEEe
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFY------------PY---------LFSAAFITQTVCLD--------DVTIRFEIWD   96 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~------------~~---------Tig~~~~~~~i~~~--------~~~v~l~i~D   96 (373)
                      .++++|.   |||||+.+|+...-.            +.         |+....  ..+.+.        ++.+.+.+||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~--~~~~~~~~~~~~~~~~~~~i~iiD   79 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSA--ISLYFEYEEEDKADGNEYLINLID   79 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccce--EEEEEecCcccccCCCceEEEEEC
Confidence            3677776   999999999754210            00         222111  122222        4478899999


Q ss_pred             CCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeC
Q psy18160         97 TAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNK  176 (373)
Q Consensus        97 t~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK  176 (373)
                      |||+++|......+++.+|++++|+|+++..+.+... .+..+..                        .++|+++|+||
T Consensus        80 TPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~~~~------------------------~~~p~ilviNK  134 (222)
T cd01885          80 SPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQALK------------------------ERVKPVLVINK  134 (222)
T ss_pred             CCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHHHHH------------------------cCCCEEEEEEC
Confidence            9999999999999999999999999999876554322 2222222                        35799999999


Q ss_pred             CCCCCCCcccCHHHHHH
Q psy18160        177 ADLPTSRRCVEYSEGEA  193 (373)
Q Consensus       177 ~Dl~~~~~~v~~~e~~~  193 (373)
                      +|+...+..++.+++..
T Consensus       135 iD~~~~e~~~~~~~~~~  151 (222)
T cd01885         135 IDRLILELKLSPEEAYQ  151 (222)
T ss_pred             CCcchhhhcCCHHHHHH
Confidence            99864435566665543

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.32  E-value=1.9e-12  Score=109.14  Aligned_cols=77  Identities=23%  Similarity=0.213  Sum_probs=53.3

Q ss_pred             hhhccCCcEEEEEEECCCHhhHH--HHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc
Q psy18160        108 PMYYRNAQAAIIVYDITNQDTFG--RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC  185 (373)
Q Consensus       108 ~~~~~~ad~iilv~D~~~~~Sf~--~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~  185 (373)
                      ...++.+|++++|+|+.++.+..  .+.+|+...                         ..+.|+++|.||+|+.++ . 
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-------------------------~~~k~~iivlNK~DL~~~-~-   58 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-------------------------DPRKKNILLLNKADLLTE-E-   58 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-------------------------cCCCcEEEEEechhcCCH-H-
Confidence            34578999999999998876544  333443321                         146799999999998543 1 


Q ss_pred             cCHHHHHHHHHHcCCeEEEEcCCCCCC
Q psy18160        186 VEYSEGEAYAEENGLLFMETSAKTAMN  212 (373)
Q Consensus       186 v~~~e~~~~~~~~~~~~~evSak~~~g  212 (373)
                       ...+..++.+..+.+++++||+++.+
T Consensus        59 -~~~~~~~~~~~~~~~ii~iSa~~~~~   84 (141)
T cd01857          59 -QRKAWAEYFKKEGIVVVFFSALKENA   84 (141)
T ss_pred             -HHHHHHHHHHhcCCeEEEEEecCCCc
Confidence             22344555666678899999997654

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.32  E-value=4.7e-11  Score=104.28  Aligned_cols=157  Identities=15%  Similarity=0.107  Sum_probs=110.3

Q ss_pred             ccCCCCCCcEEEEEEcC---ChhHHHHHhhhCc-CcCc--ceeeeEEEEEEEECCEEEEEEEEeCCC----------ccc
Q psy18160         39 MSGKRQSDCMAQIWLKD---RVDCMTQIVINVV-FYPY--LFSAAFITQTVCLDDVTIRFEIWDTAG----------QER  102 (373)
Q Consensus        39 ~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~-~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G----------~e~  102 (373)
                      +++-|+.+..-|+++|.   |||||+|.+++.+ ..-.  |+|.+.....+.+++.   +.+.|.||          +++
T Consensus        16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~   92 (200)
T COG0218          16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEK   92 (200)
T ss_pred             HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHH
Confidence            34556667789999998   9999999999966 2333  9998887777777765   77999999          355


Q ss_pred             ccccchhhcc---CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160        103 YHTLAPMYYR---NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL  179 (373)
Q Consensus       103 ~~~l~~~~~~---~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl  179 (373)
                      +..+...|++   +-.++++++|+.....-.+. +.++.+..                        .++|++||+||+|.
T Consensus        93 w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~------------------------~~i~~~vv~tK~DK  147 (200)
T COG0218          93 WKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE------------------------LGIPVIVVLTKADK  147 (200)
T ss_pred             HHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH------------------------cCCCeEEEEEcccc
Confidence            5666677765   46789999999776543333 33344443                        57899999999998


Q ss_pred             CCCCcccCHHHHHHHHHHcC----Ce--EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        180 PTSRRCVEYSEGEAYAEENG----LL--FMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       180 ~~~~~~v~~~e~~~~~~~~~----~~--~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ....  .........++...    ..  ++..|+.++.|++++...|.+.+.
T Consensus       148 i~~~--~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         148 LKKS--ERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             CChh--HHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence            6531  11111222333332    22  778899999999999999887664

>PRK12735 elongation factor Tu; Reviewed

Probab=99.31  E-value=3.1e-11  Score=119.03  Aligned_cols=157  Identities=12%  Similarity=0.061  Sum_probs=100.5

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhC-------cC---c--C----c-ceeeeEEEEEEEECCEEEEEEEEeCCCcccc
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINV-------VF---Y--P----Y-LFSAAFITQTVCLDDVTIRFEIWDTAGQERY  103 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~-------~~---~--~----~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~  103 (373)
                      ....+.++++|.   |||||++++++.       .+   .  +    . ..|.+.......+..+...+.|+||||+++|
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence            345688999997   999999999862       11   0  0    1 2233332333444444456789999999887


Q ss_pred             cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEE-EEEeCCCCCCC
Q psy18160        104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIA-LAGNKADLPTS  182 (373)
Q Consensus       104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lVgnK~Dl~~~  182 (373)
                      .......+..+|++++|+|+.+...-+ ..+++..+..                        .++|.+ ++.||+|+.+.
T Consensus        89 ~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~------------------------~gi~~iivvvNK~Dl~~~  143 (396)
T PRK12735         89 VKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ------------------------VGVPYIVVFLNKCDMVDD  143 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH------------------------cCCCeEEEEEEecCCcch
Confidence            665556677899999999998743221 2233333333                        346754 68999999642


Q ss_pred             Cc--ccCHHHHHHHHHHcC-----CeEEEEcCCCCC----------CHHHHHHHHHHHcc
Q psy18160        183 RR--CVEYSEGEAYAEENG-----LLFMETSAKTAM----------NVNEIFVEIAKKLP  225 (373)
Q Consensus       183 ~~--~v~~~e~~~~~~~~~-----~~~~evSak~~~----------gI~~lf~~L~~~i~  225 (373)
                      ..  ....+++..+++.++     ++++++||+++.          ++.+|++.|...+.
T Consensus       144 ~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        144 EELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            11  111234556666654     679999999984          67888888876653

>KOG0080|consensus

Probab=99.31  E-value=8.3e-13  Score=109.79  Aligned_cols=61  Identities=33%  Similarity=0.535  Sum_probs=58.1

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+..+|+++||++|||||+|+.||..+.|......|||        +||.+|.+.|||++++|.|||.|
T Consensus         8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIG--------vDFkvk~m~vdg~~~KlaiWDTA   68 (209)
T KOG0080|consen    8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIG--------VDFKVKVMQVDGKRLKLAIWDTA   68 (209)
T ss_pred             cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceee--------eeEEEEEEEEcCceEEEEEEecc
Confidence            45679999999999999999999999999999999999        99999999999999999999998

>KOG0095|consensus

Probab=99.30  E-value=1.9e-12  Score=106.25  Aligned_cols=60  Identities=32%  Similarity=0.491  Sum_probs=57.3

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..||++++|..|||||||+.||.++-|+.....|||        +||..|++.|+|.+|+|||||.|
T Consensus         5 kflfkivlvgnagvgktclvrrftqglfppgqgatig--------vdfmiktvev~gekiklqiwdta   64 (213)
T KOG0095|consen    5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIG--------VDFMIKTVEVNGEKIKLQIWDTA   64 (213)
T ss_pred             ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceee--------eeEEEEEEEECCeEEEEEEeecc
Confidence            4568999999999999999999999999999999999        89989999999999999999987

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.29  E-value=2.7e-11  Score=101.16  Aligned_cols=131  Identities=15%  Similarity=0.150  Sum_probs=91.4

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCcc----cccccchhhccCCcEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQE----RYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e----~~~~l~~~~~~~ad~iilv  120 (373)
                      +++++|.   |||||++++.+.+.... |..+.|.       +     .++||||.-    .|..-.-....+||.+++|
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~-------~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll   70 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYY-------D-----NTIDTPGEYIENPRFYHALIVTAQDADVVLLL   70 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCCcCccceeEec-------c-----cEEECChhheeCHHHHHHHHHHHhhCCEEEEE
Confidence            6777776   99999999999876554 5443332       2     357999941    1111122234589999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      .|.+++.+.--     ..+.                       ..-+.|+|=|.||+|+..+  ....+.++++.+..|+
T Consensus        71 ~dat~~~~~~p-----P~fa-----------------------~~f~~pvIGVITK~Dl~~~--~~~i~~a~~~L~~aG~  120 (143)
T PF10662_consen   71 QDATEPRSVFP-----PGFA-----------------------SMFNKPVIGVITKIDLPSD--DANIERAKKWLKNAGV  120 (143)
T ss_pred             ecCCCCCccCC-----chhh-----------------------cccCCCEEEEEECccCccc--hhhHHHHHHHHHHcCC
Confidence            99998653110     0000                       1125799999999999842  2567778888888886


Q ss_pred             -eEEEEcCCCCCCHHHHHHHHH
Q psy18160        201 -LFMETSAKTAMNVNEIFVEIA  221 (373)
Q Consensus       201 -~~~evSak~~~gI~~lf~~L~  221 (373)
                       ..|++|+.+|+||++|.+.|-
T Consensus       121 ~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  121 KEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             CCeEEEECCCCcCHHHHHHHHh
Confidence             479999999999999998873

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01856 YlqF YlqF

Probab=99.29  E-value=5.2e-12  Score=110.09  Aligned_cols=157  Identities=18%  Similarity=0.072  Sum_probs=98.4

Q ss_pred             cchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc
Q psy18160        106 LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC  185 (373)
Q Consensus       106 l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~  185 (373)
                      .....+++||.+++|+|++++....+. .++..                          ..+.|+++|.||+|+.+. . 
T Consensus        12 ~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~--------------------------~~~k~~ilVlNK~Dl~~~-~-   62 (171)
T cd01856          12 QIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI--------------------------LGNKPRIIVLNKADLADP-K-   62 (171)
T ss_pred             HHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH--------------------------hcCCCEEEEEehhhcCCh-H-
Confidence            345668899999999999876532211 11111                          124689999999999542 1 


Q ss_pred             cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccc
Q psy18160        186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIH  265 (373)
Q Consensus       186 v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~  265 (373)
                       ...+..++.+..+..++.+||+++.|++++.+.+...+...... ..                                
T Consensus        63 -~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~l~~~~~~-~~--------------------------------  108 (171)
T cd01856          63 -KTKKWLKYFESKGEKVLFVNAKSGKGVKKLLKAAKKLLKDIEKL-KA--------------------------------  108 (171)
T ss_pred             -HHHHHHHHHHhcCCeEEEEECCCcccHHHHHHHHHHHHHHHhhh-hh--------------------------------
Confidence             11222233344456789999999999999999988776421000 00                                


Q ss_pred             eeecccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecc
Q psy18160        266 ILTMANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMP  345 (373)
Q Consensus       266 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~  345 (373)
                                               .......++++++|.+++|||++++++....+. ...++.|        ..+...
T Consensus       109 -------------------------~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~--------~T~~~~  154 (171)
T cd01856         109 -------------------------KGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPG--------VTKGIQ  154 (171)
T ss_pred             -------------------------cccCCCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCC--------EEeeeE
Confidence                                     000112368899999999999999999987764 2334445        223223


Q ss_pred             eeeeCCeEEEEEehhhH
Q psy18160        346 TKNRLNNNVPITFVWVI  362 (373)
Q Consensus       346 ~~~v~~~~~~l~iw~~~  362 (373)
                      .+.++   ..+.|||.+
T Consensus       155 ~~~~~---~~~~~iDtp  168 (171)
T cd01856         155 WIKIS---PGIYLLDTP  168 (171)
T ss_pred             EEEec---CCEEEEECC
Confidence            33343   346788875

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0394|consensus

Probab=99.27  E-value=9e-13  Score=112.17  Aligned_cols=61  Identities=26%  Similarity=0.373  Sum_probs=57.2

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      ...+|++++|++|||||+|++||+.+.|...|..|||        .||..|.+.||++.++|||||.|-
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIg--------adFltKev~Vd~~~vtlQiWDTAG   67 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIG--------ADFLTKEVQVDDRSVTLQIWDTAG   67 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccc--------hhheeeEEEEcCeEEEEEEEeccc
Confidence            3458999999999999999999999999999999999        888889999999999999999983

>cd04169 RF3 RF3 subfamily

Probab=99.26  E-value=7e-11  Score=110.22  Aligned_cols=109  Identities=12%  Similarity=0.049  Sum_probs=74.2

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCc---------------------Cc--ceeeeEEEEEEEECCEEEEEEEEeCCCccc
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFY---------------------PY--LFSAAFITQTVCLDDVTIRFEIWDTAGQER  102 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~---------------------~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~  102 (373)
                      .++++|-   |||||+++++...-.                     +.  ..|.++......+..+.+.+.+|||+|+++
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d   83 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED   83 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence            4667775   999999999842100                     00  122333334444555567899999999998


Q ss_pred             ccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160        103 YHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       103 ~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  182 (373)
                      |......+++.+|++++|+|.++.... ....++.....                        .++|+++++||+|+...
T Consensus        84 f~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~------------------------~~~P~iivvNK~D~~~a  138 (267)
T cd04169          84 FSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL------------------------RGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh------------------------cCCCEEEEEECCccCCC
Confidence            887777788999999999999875321 22233333322                        46899999999998653

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK13351 elongation factor G; Reviewed

Probab=99.26  E-value=2.9e-11  Score=127.38  Aligned_cols=108  Identities=17%  Similarity=0.136  Sum_probs=77.6

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcC-------------c----Cc------ceeeeEEEEEEEECCEEEEEEEEeCCC
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVF-------------Y----PY------LFSAAFITQTVCLDDVTIRFEIWDTAG   99 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~-------------~----~~------Tig~~~~~~~i~~~~~~v~l~i~Dt~G   99 (373)
                      ...+++++|.   |||||+++|+...-             .    +.      |+....  ..+..  ..+.+.+|||+|
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~--~~~~~--~~~~i~liDtPG   82 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAA--TSCDW--DNHRINLIDTPG   82 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccce--EEEEE--CCEEEEEEECCC
Confidence            4567888886   99999999985310             0    00      332222  22333  356789999999


Q ss_pred             cccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160        100 QERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL  179 (373)
Q Consensus       100 ~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl  179 (373)
                      +.+|...+..+++.+|++++|+|.++..+......| ..+..                        .++|+++|+||+|+
T Consensus        83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~------------------------~~~p~iiviNK~D~  137 (687)
T PRK13351         83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR------------------------YGIPRLIFINKMDR  137 (687)
T ss_pred             cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh------------------------cCCCEEEEEECCCC
Confidence            999988889999999999999999987766554433 33333                        36899999999998


Q ss_pred             CCC
Q psy18160        180 PTS  182 (373)
Q Consensus       180 ~~~  182 (373)
                      ...
T Consensus       138 ~~~  140 (687)
T PRK13351        138 VGA  140 (687)
T ss_pred             CCC
Confidence            653

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.26  E-value=4.3e-11  Score=119.38  Aligned_cols=146  Identities=14%  Similarity=0.103  Sum_probs=95.8

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCc---------------------------CcCc-----ceeeeEEEEEEEECCEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVV---------------------------FYPY-----LFSAAFITQTVCLDDVT   89 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~---------------------------~~~~-----Tig~~~~~~~i~~~~~~   89 (373)
                      ...+.++++|.   |||||+-+++..-                           +.+.     ..|.+.......+....
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            34577888886   9999998887310                           0010     22222222233344455


Q ss_pred             EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHH-------HHHHHHHHHHhhCCCCCCcccccchhHHhhhh
Q psy18160         90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFG-------RAKSWVKELQRMAPPNIDTFGRAKSWVKELQR  162 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~-------~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      ..+.++|+||+++|.......++.+|++|+|+|+++ ..|+       ...+.+..+..                     
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~---------------------  142 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT---------------------  142 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHH---------------------
Confidence            678999999999998888888999999999999986 3332       22222222222                     


Q ss_pred             cCCCCC-eEEEEEeCCCCCCCC----c-ccCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q psy18160        163 MAPPNI-VIALAGNKADLPTSR----R-CVEYSEGEAYAEENG-----LLFMETSAKTAMNVNE  215 (373)
Q Consensus       163 ~~~~~~-piilVgnK~Dl~~~~----~-~v~~~e~~~~~~~~~-----~~~~evSak~~~gI~~  215 (373)
                         .++ ++++++||+|+.+..    + ....+++..+++..|     ++|+++||++|+|+.+
T Consensus       143 ---~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        143 ---LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             ---cCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence               345 578899999986210    0 012445667777766     5799999999999854

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.26  E-value=6.9e-12  Score=121.92  Aligned_cols=94  Identities=28%  Similarity=0.323  Sum_probs=70.3

Q ss_pred             cccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160        100 QERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL  179 (373)
Q Consensus       100 ~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl  179 (373)
                      .++|..+...+++.++++++|+|+.+..     ..|..++.+                     . ..+.|+++|+||+|+
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~---------------------~-~~~~piilV~NK~DL  102 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKR---------------------F-VGGNPVLLVGNKIDL  102 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHH---------------------H-hCCCCEEEEEEchhh
Confidence            5678888899999999999999997654     234444444                     1 135789999999999


Q ss_pred             CCCCcccCHHHHHH----HHHHcCC---eEEEEcCCCCCCHHHHHHHHHH
Q psy18160        180 PTSRRCVEYSEGEA----YAEENGL---LFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       180 ~~~~~~v~~~e~~~----~~~~~~~---~~~evSak~~~gI~~lf~~L~~  222 (373)
                      ...  .+..++..+    +++..++   .++++||+++.|++++|+.|.+
T Consensus       103 l~k--~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~  150 (360)
T TIGR03597       103 LPK--SVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKK  150 (360)
T ss_pred             CCC--CCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence            653  344444443    4666776   4899999999999999998854

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=1.3e-10  Score=114.39  Aligned_cols=146  Identities=17%  Similarity=0.149  Sum_probs=101.9

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECC-EEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDD-VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~-~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      -++++|-   |||||+..+-.......   -+.-......+.++. ..-.+.|.||||++-|..|+..-..-+|.++||+
T Consensus         7 vVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVV   86 (509)
T COG0532           7 VVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVV   86 (509)
T ss_pred             EEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEE
Confidence            4566664   99999999988877765   222222233444431 2345889999999999999999899999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC--
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG--  199 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~--  199 (373)
                      |++|.---+.++. +..++                        ..++|++++.||+|.++.    .++....-..++|  
T Consensus        87 a~dDGv~pQTiEA-I~hak------------------------~a~vP~iVAiNKiDk~~~----np~~v~~el~~~gl~  137 (509)
T COG0532          87 AADDGVMPQTIEA-INHAK------------------------AAGVPIVVAINKIDKPEA----NPDKVKQELQEYGLV  137 (509)
T ss_pred             EccCCcchhHHHH-HHHHH------------------------HCCCCEEEEEecccCCCC----CHHHHHHHHHHcCCC
Confidence            9998432222221 11222                        368999999999999754    2333333333333  


Q ss_pred             -------CeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        200 -------LLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       200 -------~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                             ..++++||++|+|+++|+..++-.
T Consensus       138 ~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~  168 (509)
T COG0532         138 PEEWGGDVIFVPVSAKTGEGIDELLELILLL  168 (509)
T ss_pred             HhhcCCceEEEEeeccCCCCHHHHHHHHHHH
Confidence                   369999999999999999887643

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.22  E-value=1.6e-10  Score=117.33  Aligned_cols=110  Identities=11%  Similarity=0.037  Sum_probs=74.8

Q ss_pred             cEEEEEEcC---ChhHHHHHhhh--CcC----------------c---Cc--ceeeeEEEEEEEECCEEEEEEEEeCCCc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVIN--VVF----------------Y---PY--LFSAAFITQTVCLDDVTIRFEIWDTAGQ  100 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~--~~~----------------~---~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~  100 (373)
                      ...++++|-   |||||+++++.  +..                .   +.  ..|..+....+.++.+.+.+.+|||+|+
T Consensus        10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~   89 (526)
T PRK00741         10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH   89 (526)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence            346777775   99999999973  110                0   00  2233333333444444577999999999


Q ss_pred             ccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCC
Q psy18160        101 ERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP  180 (373)
Q Consensus       101 e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~  180 (373)
                      +.|......+++.+|++|+|+|+++.... ...+++.....                        .++|+++++||+|+.
T Consensus        90 ~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~------------------------~~iPiiv~iNK~D~~  144 (526)
T PRK00741         90 EDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL------------------------RDTPIFTFINKLDRD  144 (526)
T ss_pred             hhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh------------------------cCCCEEEEEECCccc
Confidence            99988777889999999999999875321 22333333332                        478999999999985


Q ss_pred             C
Q psy18160        181 T  181 (373)
Q Consensus       181 ~  181 (373)
                      .
T Consensus       145 ~  145 (526)
T PRK00741        145 G  145 (526)
T ss_pred             c
Confidence            4

>KOG0092|consensus

Probab=99.22  E-value=8.4e-12  Score=107.22  Aligned_cols=59  Identities=47%  Similarity=0.648  Sum_probs=56.4

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|+.+||||+|+.||..+.|.+...||||        ..|..+++.++++.|++.|||+|
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIG--------aaF~tktv~~~~~~ikfeIWDTA   62 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIG--------AAFLTKTVTVDDNTIKFEIWDTA   62 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccc--------cEEEEEEEEeCCcEEEEEEEEcC
Confidence            468999999999999999999999999999999999        88889999999999999999997

>COG1162 Predicted GTPases [General function prediction only]

Probab=99.21  E-value=4e-11  Score=111.32  Aligned_cols=99  Identities=22%  Similarity=0.163  Sum_probs=77.7

Q ss_pred             ccccccchhhccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160        101 ERYHTLAPMYYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL  179 (373)
Q Consensus       101 e~~~~l~~~~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl  179 (373)
                      ++-..+.+.-+.+.|-.++|+++.+|+ +...+.+++-.+..                        .++..+||.||+||
T Consensus        67 ~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~------------------------~gi~pvIvlnK~DL  122 (301)
T COG1162          67 PRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA------------------------GGIEPVIVLNKIDL  122 (301)
T ss_pred             cccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH------------------------cCCcEEEEEEcccc
Confidence            455556666677888899999998887 88888898887766                        57788889999999


Q ss_pred             CCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        180 PTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       180 ~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      .++..... ++....+...|++.+.+|++++.+++++...+...+
T Consensus       123 ~~~~~~~~-~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~~  166 (301)
T COG1162         123 LDDEEAAV-KELLREYEDIGYPVLFVSAKNGDGLEELAELLAGKI  166 (301)
T ss_pred             CcchHHHH-HHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCCe
Confidence            87522222 456677888999999999999999999988775443

>KOG0093|consensus

Probab=99.20  E-value=1.1e-11  Score=101.74  Aligned_cols=74  Identities=24%  Similarity=0.344  Sum_probs=66.7

Q ss_pred             CCCCCCCcccccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        283 RIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       283 ~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +.++....+++.++++|++++|++.+|||+++-||++++|...|.+|+|        +||..|++.-.+++|+|||||.|
T Consensus         7 ~~~~~~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvG--------idFKvKTvyr~~kRiklQiwDTa   78 (193)
T KOG0093|consen    7 YGASKDSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVG--------IDFKVKTVYRSDKRIKLQIWDTA   78 (193)
T ss_pred             CCCccccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeee--------eeEEEeEeeecccEEEEEEEecc
Confidence            3444555677889999999999999999999999999999999999999        89999999999999999999998


Q ss_pred             HH
Q psy18160        363 MM  364 (373)
Q Consensus       363 ~~  364 (373)
                      -|
T Consensus        79 gq   80 (193)
T KOG0093|consen   79 GQ   80 (193)
T ss_pred             cc
Confidence            65

>PLN03126 Elongation factor Tu; Provisional

Probab=99.20  E-value=1.7e-10  Score=115.69  Aligned_cols=144  Identities=13%  Similarity=0.019  Sum_probs=91.6

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCc------C----------cCc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccc
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVV------F----------YPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERY  103 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~------~----------~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~  103 (373)
                      ....+.++++|.   |||||+++|+...      .          .+. ..|.+.......+..+...+.++|+||+++|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            456688999997   9999999999521      0          111 3333332223333333456789999999988


Q ss_pred             cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCC
Q psy18160        104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTS  182 (373)
Q Consensus       104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~  182 (373)
                      .......+..+|++++|+|+.+...-+ ..+++..+..                        .++| ++++.||+|+.+.
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~------------------------~gi~~iIvvvNK~Dl~~~  212 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ------------------------VGVPNMVVFLNKQDQVDD  212 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH------------------------cCCCeEEEEEecccccCH
Confidence            766666677899999999988653222 2333333333                        3566 7889999998653


Q ss_pred             Ccc--cCHHHHHHHHHHc-----CCeEEEEcCCCCCC
Q psy18160        183 RRC--VEYSEGEAYAEEN-----GLLFMETSAKTAMN  212 (373)
Q Consensus       183 ~~~--v~~~e~~~~~~~~-----~~~~~evSak~~~g  212 (373)
                      +..  .-.++..++.+..     .++++.+||.++.+
T Consensus       213 ~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        213 EELLELVELEVRELLSSYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence            110  1112445555554     45799999998754

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.20  E-value=1.8e-10  Score=102.66  Aligned_cols=152  Identities=13%  Similarity=0.070  Sum_probs=91.8

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceee-eEEEEEEEEC-CEEEEEEEEeCCCcccccccchhh-----ccCC
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSA-AFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMY-----YRNA  114 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~-~~~~~~i~~~-~~~v~l~i~Dt~G~e~~~~l~~~~-----~~~a  114 (373)
                      ++++++|.   |||||+|.+++..+...   +.+. ........+. +....+.+|||+|..........|     +.++
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~   81 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEY   81 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccCc
Confidence            57899997   99999999998765432   2231 1100011111 112368999999986443333333     6688


Q ss_pred             cEEEEEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc------C
Q psy18160        115 QAAIIVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV------E  187 (373)
Q Consensus       115 d~iilv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v------~  187 (373)
                      |+++++.|-    +|...+ .|+..+..                        .+.|+++|+||+|+.......      .
T Consensus        82 d~~l~v~~~----~~~~~d~~~~~~l~~------------------------~~~~~ilV~nK~D~~~~~~~~~~~~~~~  133 (197)
T cd04104          82 DFFIIISST----RFSSNDVKLAKAIQC------------------------MGKKFYFVRTKVDRDLSNEQRSKPRSFN  133 (197)
T ss_pred             CEEEEEeCC----CCCHHHHHHHHHHHH------------------------hCCCEEEEEecccchhhhhhcccccccc
Confidence            998888432    233333 45555544                        256899999999984321100      1


Q ss_pred             HHH----HHHH----HHHcC---CeEEEEcCC--CCCCHHHHHHHHHHHcchh
Q psy18160        188 YSE----GEAY----AEENG---LLFMETSAK--TAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       188 ~~e----~~~~----~~~~~---~~~~evSak--~~~gI~~lf~~L~~~i~~~  227 (373)
                      .++    .++.    ....+   -++|.+|+.  .+.++..+.+.|...+.+.
T Consensus       134 ~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         134 REQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence            111    1111    12222   268999998  5789999999999988753

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>KOG0079|consensus

Probab=99.20  E-value=1.6e-12  Score=106.69  Aligned_cols=60  Identities=33%  Similarity=0.496  Sum_probs=57.0

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+|++++|+++||||+|+.||..+.|+..|..|||        +||..+++.|.|..|+|+|||.|
T Consensus         6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiG--------vDfkirTv~i~G~~VkLqIwDtA   65 (198)
T KOG0079|consen    6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIG--------VDFKIRTVDINGDRVKLQIWDTA   65 (198)
T ss_pred             HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEee--------eeEEEEEeecCCcEEEEEEeecc
Confidence            3457889999999999999999999999999999999        99999999999999999999987

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.18  E-value=1.2e-10  Score=116.99  Aligned_cols=149  Identities=15%  Similarity=0.036  Sum_probs=89.8

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcCc-----------------------------Cc-----ceeeeEEEEEEEE
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVFY-----------------------------PY-----LFSAAFITQTVCL   85 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~-----------------------------~~-----Tig~~~~~~~i~~   85 (373)
                      .....++++++|.   |||||+.+++...-.                             +.     ..|.+.......+
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~  102 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF  102 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence            3456689999997   999999999743110                             00     1111111122223


Q ss_pred             CCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCC
Q psy18160         86 DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP  165 (373)
Q Consensus        86 ~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (373)
                      ..+...+.||||||+++|.......++.+|++++|+|+++...-.....+ ..+..                     .  
T Consensus       103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~---------------------l--  158 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATL---------------------L--  158 (474)
T ss_pred             ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHH---------------------h--
Confidence            33345688999999988865444457899999999999764321111111 11111                     1  


Q ss_pred             CCCeEEEEEeCCCCCCCCcccCHH----HHHHHHHHcC----CeEEEEcCCCCCCHHHH
Q psy18160        166 PNIVIALAGNKADLPTSRRCVEYS----EGEAYAEENG----LLFMETSAKTAMNVNEI  216 (373)
Q Consensus       166 ~~~piilVgnK~Dl~~~~~~v~~~----e~~~~~~~~~----~~~~evSak~~~gI~~l  216 (373)
                      ...|++|+.||+|+... +....+    +...+.+..+    .+++++||++|.|++++
T Consensus       159 g~~~iIvvvNKiD~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        159 GIKHLVVAVNKMDLVDY-SEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             CCCceEEEEEeeccccc-hhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            12478999999998643 111122    2223333333    67999999999999864

>CHL00071 tufA elongation factor Tu

Probab=99.18  E-value=2.9e-10  Score=112.53  Aligned_cols=144  Identities=13%  Similarity=0.036  Sum_probs=92.1

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCc----------------Cc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccc
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFY----------------PY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERY  103 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~----------------~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~  103 (373)
                      ....+.++++|.   |||||++++++..-.                .. ..|.+.......+..+...+.+.||||+.+|
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            345688999997   999999999964110                00 2333333333334334456789999999887


Q ss_pred             cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCC
Q psy18160        104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTS  182 (373)
Q Consensus       104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~  182 (373)
                      .......+..+|++++|+|+.....- ...+.+..+..                        .++| ++++.||+|+.+.
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~~------------------------~g~~~iIvvvNK~D~~~~  143 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPMP-QTKEHILLAKQ------------------------VGVPNIVVFLNKEDQVDD  143 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCcH-HHHHHHHHHHH------------------------cCCCEEEEEEEccCCCCH
Confidence            66556667899999999999864321 12223333333                        3567 7789999999653


Q ss_pred             Ccc--cCHHHHHHHHHHcC-----CeEEEEcCCCCCC
Q psy18160        183 RRC--VEYSEGEAYAEENG-----LLFMETSAKTAMN  212 (373)
Q Consensus       183 ~~~--v~~~e~~~~~~~~~-----~~~~evSak~~~g  212 (373)
                      ...  .-.+++.++.+..+     ++++.+||.+|.|
T Consensus       144 ~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        144 EELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence            110  11234555555544     5799999999874

>KOG0077|consensus

Probab=99.18  E-value=4.1e-11  Score=100.39  Aligned_cols=149  Identities=15%  Similarity=0.202  Sum_probs=110.5

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      -+++++|=   |||||++.+.+++....  |...+  +..+.+.+  ++++.+|.+|+..-+..|+.|+..+|++++.+|
T Consensus        21 gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPT--SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvd   96 (193)
T KOG0077|consen   21 GKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT--SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVD   96 (193)
T ss_pred             ceEEEEeecCCchhhHHHHHccccccccCCCcCCC--hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeeee
Confidence            47888884   99999999999877665  43332  33455554  678999999999889999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH---HHH--
Q psy18160        123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY---AEE--  197 (373)
Q Consensus       123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~---~~~--  197 (373)
                      +-|.+.|.+...-++.+...                    ......|+++.+||+|.+..   .+.++....   ...  
T Consensus        97 a~d~er~~es~~eld~ll~~--------------------e~la~vp~lilgnKId~p~a---~se~~l~~~l~l~~~t~  153 (193)
T KOG0077|consen   97 AYDQERFAESKKELDALLSD--------------------ESLATVPFLILGNKIDIPYA---ASEDELRFHLGLSNFTT  153 (193)
T ss_pred             hhhHHHhHHHHHHHHHHHhH--------------------HHHhcCcceeecccccCCCc---ccHHHHHHHHHHHHHhc
Confidence            99999998887655555431                    23467899999999999765   344443221   111  


Q ss_pred             -cC-----------CeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        198 -NG-----------LLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       198 -~~-----------~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                       .+           +..|.||...+.+.-+.|.++...
T Consensus       154 ~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  154 GKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             ccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence             11           247888988888888888877543

>cd01850 CDC_Septin CDC/Septin

Probab=99.18  E-value=4e-10  Score=105.64  Aligned_cols=137  Identities=12%  Similarity=0.075  Sum_probs=89.0

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc-------------ceeeeEEEEEEEECCEEEEEEEEeCCCcccc-------
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY-------------LFSAAFITQTVCLDDVTIRFEIWDTAGQERY-------  103 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~-------------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~-------  103 (373)
                      .++++++|.   |||||+|++++..+...             |++.+.....+..+|..+.+.+|||+|...+       
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            468889987   99999999998876432             5555666667777888899999999994222       


Q ss_pred             -------------------cccchhhcc--CCcEEEEEEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhh
Q psy18160        104 -------------------HTLAPMYYR--NAQAAIIVYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQ  161 (373)
Q Consensus       104 -------------------~~l~~~~~~--~ad~iilv~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                                         ...+...+.  .+|+++++++.+... +... .+.+..+.                     
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~---------------------  141 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS---------------------  141 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh---------------------
Confidence                               122223444  466777777765411 1111 11222221                     


Q ss_pred             hcCCCCCeEEEEEeCCCCCCCC-cccCHHHHHHHHHHcCCeEEEEcCCC
Q psy18160        162 RMAPPNIVIALAGNKADLPTSR-RCVEYSEGEAYAEENGLLFMETSAKT  209 (373)
Q Consensus       162 ~~~~~~~piilVgnK~Dl~~~~-~~v~~~e~~~~~~~~~~~~~evSak~  209 (373)
                          ..+|+++|+||+|+.... .....+.+.+.++.+++++|......
T Consensus       142 ----~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         142 ----KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             ----ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence                257999999999985421 22334556777888899998877643

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01858 NGP_1 NGP-1

Probab=99.17  E-value=4.9e-11  Score=102.38  Aligned_cols=87  Identities=13%  Similarity=0.151  Sum_probs=56.0

Q ss_pred             hccCCcEEEEEEECCCHhh--HHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccC
Q psy18160        110 YYRNAQAAIIVYDITNQDT--FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE  187 (373)
Q Consensus       110 ~~~~ad~iilv~D~~~~~S--f~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~  187 (373)
                      .++++|.+++|.|+.++..  ...+.+++.   .                      ...+.|+++|.||+|+.+. .  .
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~----------------------~~~~~p~ilVlNKiDl~~~-~--~   56 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---K----------------------EKPHKHLIFVLNKCDLVPT-W--V   56 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHH---h----------------------ccCCCCEEEEEEchhcCCH-H--H
Confidence            4678999999999988642  223333322   1                      1235799999999999643 1  1


Q ss_pred             HHHH-HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        188 YSEG-EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       188 ~~e~-~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      ..+. ..+.+.+....+.+||+++.|++++.+.+...+
T Consensus        57 ~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          57 TARWVKILSKEYPTIAFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             HHHHHHHHhcCCcEEEEEeeccccccHHHHHHHHHHHH
Confidence            1121 222222223357899999999999998886543

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.17  E-value=1.5e-10  Score=114.37  Aligned_cols=103  Identities=24%  Similarity=0.175  Sum_probs=66.6

Q ss_pred             EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160         89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI  168 (373)
Q Consensus        89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (373)
                      ...+.|+||||+++|.......+..+|++++|+|+.....-+..+.| ..+..                     .  ...
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~---------------------~--~~~  134 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASL---------------------L--GIR  134 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHH---------------------c--CCC
Confidence            45788999999998866555668899999999999764322111111 11222                     1  123


Q ss_pred             eEEEEEeCCCCCCCCccc---CHHHHHHHHHHcC---CeEEEEcCCCCCCHHH
Q psy18160        169 VIALAGNKADLPTSRRCV---EYSEGEAYAEENG---LLFMETSAKTAMNVNE  215 (373)
Q Consensus       169 piilVgnK~Dl~~~~~~v---~~~e~~~~~~~~~---~~~~evSak~~~gI~~  215 (373)
                      +++++.||+|+.......   ..++...+.+..+   .+++++||++|.|+++
T Consensus       135 ~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       135 HVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             cEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            688999999986431111   1122333445444   4699999999999986

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.16  E-value=5.5e-10  Score=106.44  Aligned_cols=76  Identities=17%  Similarity=0.173  Sum_probs=52.4

Q ss_pred             EEEEcC---ChhHHHHHhhhCcCcCc---------ceeeeEEEEE---------------EEECC-EEEEEEEEeCCCc-
Q psy18160         50 QIWLKD---RVDCMTQIVINVVFYPY---------LFSAAFITQT---------------VCLDD-VTIRFEIWDTAGQ-  100 (373)
Q Consensus        50 ivvlG~---GKTsLl~rl~~~~~~~~---------Tig~~~~~~~---------------i~~~~-~~v~l~i~Dt~G~-  100 (373)
                      ++++|.   |||||+|++++..+...         ++|..+....               ..+++ ..+.+++|||+|. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            356776   99999999999874321         4444332111               01233 3477999999998 


Q ss_pred             ---ccccccchhh---ccCCcEEEEEEECCC
Q psy18160        101 ---ERYHTLAPMY---YRNAQAAIIVYDITN  125 (373)
Q Consensus       101 ---e~~~~l~~~~---~~~ad~iilv~D~~~  125 (373)
                         +++..+...+   +++||++++|+|++.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence               5566666665   899999999999973

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.16  E-value=3e-10  Score=113.23  Aligned_cols=157  Identities=11%  Similarity=0.114  Sum_probs=99.7

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCc---CcCc-----ceeeeEEEEEE-------------EECCE------------
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVV---FYPY-----LFSAAFITQTV-------------CLDDV------------   88 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~---~~~~-----Tig~~~~~~~i-------------~~~~~------------   88 (373)
                      ...+.+.++|-   |||||+..+++..   +.+.     |+..-|.....             .++..            
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            44577888886   9999999999642   2322     44433321100             01100            


Q ss_pred             ----EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhc
Q psy18160         89 ----TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRM  163 (373)
Q Consensus        89 ----~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                          ...+.++|+||+++|......-+..+|++++|+|+++.. ..+. .+.+..+..                      
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~i~~~----------------------  168 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLAAVEI----------------------  168 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHHHHHH----------------------
Confidence                236789999999988665556677999999999998641 1111 122222222                      


Q ss_pred             CCCCCeEEEEEeCCCCCCCCcc-cCHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        164 APPNIVIALAGNKADLPTSRRC-VEYSEGEAYAEE---NGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       164 ~~~~~piilVgnK~Dl~~~~~~-v~~~e~~~~~~~---~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                       ..-.|+++|.||+|+.+.... ...+++.++.+.   .+.+++++||++|.|+++|++.|.+.+.
T Consensus       169 -lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        169 -MKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             -cCCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence             122468999999998653111 112233333332   3578999999999999999999987665

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=99.15  E-value=9.7e-11  Score=109.95  Aligned_cols=129  Identities=22%  Similarity=0.210  Sum_probs=84.6

Q ss_pred             chhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160        107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV  186 (373)
Q Consensus       107 ~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v  186 (373)
                      ....++.+|++++|+|+.++.+..+.  ++....                         .+.|+++|.||+|+.+. .  
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l-------------------------~~kp~IiVlNK~DL~~~-~--   64 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR-------------------------GNKPRLIVLNKADLADP-A--   64 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH-------------------------CCCCEEEEEEccccCCH-H--
Confidence            45567899999999999876543221  111111                         24689999999998542 1  


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccce
Q psy18160        187 EYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHI  266 (373)
Q Consensus       187 ~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~  266 (373)
                      ..++..++.+..+.+++.+||+++.|++++.+.+.+.+..........                                
T Consensus        65 ~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~--------------------------------  112 (276)
T TIGR03596        65 VTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAK--------------------------------  112 (276)
T ss_pred             HHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhc--------------------------------
Confidence            112222333445678899999999999999998877664322110000                                


Q ss_pred             eecccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCcc
Q psy18160        267 LTMANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQF  322 (373)
Q Consensus       267 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f  322 (373)
                                            +   .....++++++|.+++|||||++++.....
T Consensus       113 ----------------------~---~~~~~~~~~~vG~~nvGKSslin~l~~~~~  143 (276)
T TIGR03596       113 ----------------------G---LKNRPIRAMIVGIPNVGKSTLINRLAGKKV  143 (276)
T ss_pred             ----------------------c---CCCCCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence                                  0   001237889999999999999999986543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0087|consensus

Probab=99.15  E-value=2.6e-11  Score=105.61  Aligned_cols=66  Identities=35%  Similarity=0.453  Sum_probs=61.1

Q ss_pred             cccccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        290 QTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       290 ~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      ....-++-||++++|+++||||-|+.||..++|..+-.+|||        ++|...++.|||+.|+.||||.|-
T Consensus         7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIG--------vef~t~t~~vd~k~vkaqIWDTAG   72 (222)
T KOG0087|consen    7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIG--------VEFATRTVNVDGKTVKAQIWDTAG   72 (222)
T ss_pred             CccccceEEEEEEeCCCccchhHHHHHhcccccCccccccee--------EEEEeeceeecCcEEEEeeecccc
Confidence            344567889999999999999999999999999999999999        899999999999999999999984

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.14  E-value=4.7e-10  Score=120.59  Aligned_cols=138  Identities=20%  Similarity=0.160  Sum_probs=91.6

Q ss_pred             ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECC--E--------------EEEEEEEeCCCcccccccchhhccCC
Q psy18160         56 RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDD--V--------------TIRFEIWDTAGQERYHTLAPMYYRNA  114 (373)
Q Consensus        56 GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~--~--------------~v~l~i~Dt~G~e~~~~l~~~~~~~a  114 (373)
                      +||||+.++.+......     |.....+  .+.++.  +              .-.+.||||||++.|..++...++.+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~--~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~a  550 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGAT--EIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLA  550 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceE--EEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccC
Confidence            79999999998877655     3332222  222221  0              11278999999999998888888999


Q ss_pred             cEEEEEEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccC----
Q psy18160        115 QAAIIVYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE----  187 (373)
Q Consensus       115 d~iilv~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~----  187 (373)
                      |++++|+|+++   +.+++.+.    .+..                        .++|+++|+||+|+........    
T Consensus       551 DivlLVVDa~~Gi~~qT~e~I~----~lk~------------------------~~iPiIVViNKiDL~~~~~~~~~~~~  602 (1049)
T PRK14845        551 DLAVLVVDINEGFKPQTIEAIN----ILRQ------------------------YKTPFVVAANKIDLIPGWNISEDEPF  602 (1049)
T ss_pred             CEEEEEEECcccCCHhHHHHHH----HHHH------------------------cCCCEEEEEECCCCccccccccchhh
Confidence            99999999987   45555443    2222                        3579999999999864211000    


Q ss_pred             -----------HHHHH----HH---HHHc---------------CCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        188 -----------YSEGE----AY---AEEN---------------GLLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       188 -----------~~e~~----~~---~~~~---------------~~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                                 .++..    ++   ...+               ..+++++||++|+||++|...|...
T Consensus       603 ~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        603 LLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence                       01110    00   1111               2579999999999999999877543

>PRK00049 elongation factor Tu; Reviewed

Probab=99.14  E-value=7.9e-10  Score=108.99  Aligned_cols=155  Identities=12%  Similarity=0.074  Sum_probs=98.2

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcC----------c-----C-c-ceeeeEEEEEEEECCEEEEEEEEeCCCccccc
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVF----------Y-----P-Y-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH  104 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~----------~-----~-~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~  104 (373)
                      ...+.++++|.   |||||+++++....          .     + . ..|.+.......+..+...+.+.||||+.+|.
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~   89 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence            45678899986   99999999986210          0     0 1 23333333344444444567899999998876


Q ss_pred             ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEE-EEEeCCCCCCCC
Q psy18160        105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIA-LAGNKADLPTSR  183 (373)
Q Consensus       105 ~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lVgnK~Dl~~~~  183 (373)
                      ......+..+|++++|+|+.+...- ...+++..+..                        .++|.+ ++.||+|+.+..
T Consensus        90 ~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~------------------------~g~p~iiVvvNK~D~~~~~  144 (396)
T PRK00049         90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ------------------------VGVPYIVVFLNKCDMVDDE  144 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHH------------------------cCCCEEEEEEeecCCcchH
Confidence            6556667899999999999864322 22233333333                        356765 689999986421


Q ss_pred             ccc--CHHHHHHHHHHcC-----CeEEEEcCCCCC----------CHHHHHHHHHHHc
Q psy18160        184 RCV--EYSEGEAYAEENG-----LLFMETSAKTAM----------NVNEIFVEIAKKL  224 (373)
Q Consensus       184 ~~v--~~~e~~~~~~~~~-----~~~~evSak~~~----------gI~~lf~~L~~~i  224 (373)
                      ...  -.++..++....+     .+++.+||+++.          ++..+++.|...+
T Consensus       145 ~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        145 ELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            111  1123444544443     579999999875          4677777777654

>PLN03127 Elongation factor Tu; Provisional

Probab=99.13  E-value=8.1e-10  Score=110.20  Aligned_cols=163  Identities=13%  Similarity=0.087  Sum_probs=100.1

Q ss_pred             cccCCCCCCcEEEEEEcC---ChhHHHHHhhhC------c----C------cCc-ceeeeEEEEEEEECCEEEEEEEEeC
Q psy18160         38 MMSGKRQSDCMAQIWLKD---RVDCMTQIVINV------V----F------YPY-LFSAAFITQTVCLDDVTIRFEIWDT   97 (373)
Q Consensus        38 ~~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~------~----~------~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt   97 (373)
                      ++........+.++++|-   |||||++++.+.      .    +      .+. ..|.+.......+..+...+.+.||
T Consensus        52 ~~~~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDt  131 (447)
T PLN03127         52 MATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDC  131 (447)
T ss_pred             HhhhhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEEC
Confidence            444555667788999997   999999999722      1    0      011 2333333344445445567889999


Q ss_pred             CCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeC
Q psy18160         98 AGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNK  176 (373)
Q Consensus        98 ~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK  176 (373)
                      ||+++|.......+..+|++++|+|.++...-+ ..+.+..+..                        .++| ++++.||
T Consensus       132 PGh~~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~------------------------~gip~iIvviNK  186 (447)
T PLN03127        132 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ------------------------VGVPSLVVFLNK  186 (447)
T ss_pred             CCccchHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH------------------------cCCCeEEEEEEe
Confidence            999887554444566799999999997643222 1222333333                        3567 5789999


Q ss_pred             CCCCCCCccc-CH-HHHHHHHHHc-----CCeEEEEcCC---CCCC-------HHHHHHHHHHHcc
Q psy18160        177 ADLPTSRRCV-EY-SEGEAYAEEN-----GLLFMETSAK---TAMN-------VNEIFVEIAKKLP  225 (373)
Q Consensus       177 ~Dl~~~~~~v-~~-~e~~~~~~~~-----~~~~~evSak---~~~g-------I~~lf~~L~~~i~  225 (373)
                      +|+.+..... .. ++..++....     .++++.+||.   ++.|       +.+|++.|...+.
T Consensus       187 iDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        187 VDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             eccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            9986531100 11 1333444433     2578888876   4555       6788888777654

>KOG1423|consensus

Probab=99.13  E-value=7.7e-10  Score=101.66  Aligned_cols=159  Identities=14%  Similarity=0.085  Sum_probs=99.9

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCcceee--eEEEEEEEECCEEEEEEEEeCCCcccccc------------c
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPYLFSA--AFITQTVCLDDVTIRFEIWDTAGQERYHT------------L  106 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~------------l  106 (373)
                      ...+..++++|.   |||||.|.+++.+..+.+--+  +.....-.+-.....+.++||+|.-.-..            -
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~  148 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN  148 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence            446678888887   999999999999988771111  11111222334456789999999521111            1


Q ss_pred             chhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc-
Q psy18160        107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC-  185 (373)
Q Consensus       107 ~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~-  185 (373)
                      -...+..||++++|+|+++....-+. +.+..+.+                       ..++|-++|.||.|.....+. 
T Consensus       149 ~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~-----------------------ys~ips~lvmnkid~~k~k~~L  204 (379)
T KOG1423|consen  149 PRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEE-----------------------YSKIPSILVMNKIDKLKQKRLL  204 (379)
T ss_pred             HHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHH-----------------------HhcCCceeeccchhcchhhhHH
Confidence            12246689999999999974322111 22233333                       257899999999997654211 


Q ss_pred             -----------cC---HHHHHHHHHHc---------CC----eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        186 -----------VE---YSEGEAYAEEN---------GL----LFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       186 -----------v~---~~e~~~~~~~~---------~~----~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                                 +.   .+-.+++....         |.    .+|.+||++|+||+++-++|..+...
T Consensus       205 l~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~  272 (379)
T KOG1423|consen  205 LNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP  272 (379)
T ss_pred             hhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence                       11   11111121111         12    38999999999999999999988764

>TIGR00503 prfC peptide chain release factor 3

Probab=99.12  E-value=6.2e-10  Score=113.08  Aligned_cols=110  Identities=13%  Similarity=0.061  Sum_probs=75.6

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhh--CcCc-------------------Cc--ceeeeEEEEEEEECCEEEEEEEEeCCC
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVIN--VVFY-------------------PY--LFSAAFITQTVCLDDVTIRFEIWDTAG   99 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~--~~~~-------------------~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G   99 (373)
                      +...++++|-   |||||+++++.  +...                   +.  ..|..+....+.++.+.+.+.+|||+|
T Consensus        10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG   89 (527)
T TIGR00503        10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG   89 (527)
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence            3456777775   99999999853  1110                   00  334444445555555668899999999


Q ss_pred             cccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160        100 QERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL  179 (373)
Q Consensus       100 ~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl  179 (373)
                      +..|......+++.+|++|+|+|.++... .....++..+..                        .++|+++++||+|+
T Consensus        90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~------------------------~~~PiivviNKiD~  144 (527)
T TIGR00503        90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL------------------------RDTPIFTFMNKLDR  144 (527)
T ss_pred             hhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh------------------------cCCCEEEEEECccc
Confidence            99888777778999999999999987421 122333333222                        46899999999998


Q ss_pred             C
Q psy18160        180 P  180 (373)
Q Consensus       180 ~  180 (373)
                      .
T Consensus       145 ~  145 (527)
T TIGR00503       145 D  145 (527)
T ss_pred             c
Confidence            5

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.11  E-value=2e-10  Score=108.38  Aligned_cols=129  Identities=22%  Similarity=0.225  Sum_probs=85.5

Q ss_pred             chhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160        107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV  186 (373)
Q Consensus       107 ~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v  186 (373)
                      ....+..+|++++|+|+.++.+...  .++....                         .+.|+++|.||+|+.+.   .
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-------------------------~~kp~iiVlNK~DL~~~---~   67 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-------------------------GNKPRLLILNKSDLADP---E   67 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-------------------------CCCCEEEEEEchhcCCH---H
Confidence            3456789999999999977654322  1111111                         25689999999998542   1


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccce
Q psy18160        187 EYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHI  266 (373)
Q Consensus       187 ~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~  266 (373)
                      ..++..++.+..+.+++.+||+++.|++++.+.+...+..........+                               
T Consensus        68 ~~~~~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~-------------------------------  116 (287)
T PRK09563         68 VTKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKG-------------------------------  116 (287)
T ss_pred             HHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcc-------------------------------
Confidence            1222333334456788999999999999999988777653321100000                               


Q ss_pred             eecccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCcc
Q psy18160        267 LTMANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQF  322 (373)
Q Consensus       267 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f  322 (373)
                                                .....++++++|.++||||++++++.....
T Consensus       117 --------------------------~~~~~~~~~~~G~pnvGKSsliN~l~~~~~  146 (287)
T PRK09563        117 --------------------------MRPRAIRAMIIGIPNVGKSTLINRLAGKKI  146 (287)
T ss_pred             --------------------------cCcCceEEEEECCCCCCHHHHHHHHhcCCc
Confidence                                      001237889999999999999999987543

>KOG0086|consensus

Probab=99.10  E-value=1.9e-11  Score=100.80  Aligned_cols=62  Identities=23%  Similarity=0.386  Sum_probs=58.6

Q ss_pred             ccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       293 ~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..++.+|++++|+.|.|||||+.+|..+.|.++-..|||        ++|.++.+.|+++.|+|||||.|
T Consensus         5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiG--------veFgSrIinVGgK~vKLQIWDTA   66 (214)
T KOG0086|consen    5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIG--------VEFGSRIVNVGGKTVKLQIWDTA   66 (214)
T ss_pred             hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceee--------eeecceeeeecCcEEEEEEeecc
Confidence            456789999999999999999999999999999999999        99999999999999999999987

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.10  E-value=4.8e-10  Score=116.96  Aligned_cols=147  Identities=19%  Similarity=0.086  Sum_probs=89.2

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---------------c-------------------eee--eEEEEEE
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---------------L-------------------FSA--AFITQTV   83 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---------------T-------------------ig~--~~~~~~i   83 (373)
                      +....++++++|.   |||||+++++...-...               +                   .|.  +.....+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            3345578999997   99999999986421100               0                   111  1111222


Q ss_pred             EECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhc
Q psy18160         84 CLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRM  163 (373)
Q Consensus        84 ~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      ..+  ...+.|+||||+++|.......+..+|++++|+|+++...-+.. +.+..+..                      
T Consensus       100 ~~~--~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~-e~~~~~~~----------------------  154 (632)
T PRK05506        100 ATP--KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR-RHSFIASL----------------------  154 (632)
T ss_pred             ccC--CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH-HHHHHHHH----------------------
Confidence            233  34577999999988765445567899999999999764321111 11112222                      


Q ss_pred             CCCCCeEEEEEeCCCCCCCCccc---CHHHHHHHHHHcCC---eEEEEcCCCCCCHHH
Q psy18160        164 APPNIVIALAGNKADLPTSRRCV---EYSEGEAYAEENGL---LFMETSAKTAMNVNE  215 (373)
Q Consensus       164 ~~~~~piilVgnK~Dl~~~~~~v---~~~e~~~~~~~~~~---~~~evSak~~~gI~~  215 (373)
                       ....|++|+.||+|+.+.....   -.++..++.+..++   +++++||++|.|+++
T Consensus       155 -~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        155 -LGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             -hCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence             1235789999999986421111   11223344455554   589999999999974

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.08  E-value=1.2e-09  Score=110.68  Aligned_cols=149  Identities=16%  Similarity=0.073  Sum_probs=103.8

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc-ceee--eEEEEEEEECCEEEEEEEEeCCCcccc------cccchhhcc--C
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY-LFSA--AFITQTVCLDDVTIRFEIWDTAGQERY------HTLAPMYYR--N  113 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~e~~------~~l~~~~~~--~  113 (373)
                      ..++++|.   |||||+|++++.+.... =.|+  +...-.+...++  .+++.|.||.-..      ....+.|+.  .
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~   81 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEGK   81 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence            35788887   99999999999876655 3333  333444445554  4789999995322      223444543  5


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160        114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA  193 (373)
Q Consensus       114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~  193 (373)
                      .|+++-|.|.++.+.--   ..--++.+                        -+.|++++.|+.|..+. +-+. -+.++
T Consensus        82 ~D~ivnVvDAtnLeRnL---yltlQLlE------------------------~g~p~ilaLNm~D~A~~-~Gi~-ID~~~  132 (653)
T COG0370          82 PDLIVNVVDATNLERNL---YLTLQLLE------------------------LGIPMILALNMIDEAKK-RGIR-IDIEK  132 (653)
T ss_pred             CCEEEEEcccchHHHHH---HHHHHHHH------------------------cCCCeEEEeccHhhHHh-cCCc-ccHHH
Confidence            79999999999865311   12222333                        36789999999998664 2232 24567


Q ss_pred             HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       194 ~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +.+.+|+|++++||++|.|++++...+.+....+
T Consensus       133 L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~~  166 (653)
T COG0370         133 LSKLLGVPVVPTVAKRGEGLEELKRAIIELAESK  166 (653)
T ss_pred             HHHHhCCCEEEEEeecCCCHHHHHHHHHHhcccc
Confidence            8889999999999999999999999988755543

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.08  E-value=1.1e-09  Score=99.47  Aligned_cols=155  Identities=17%  Similarity=0.213  Sum_probs=94.1

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc-----cchhhccCC
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT-----LAPMYYRNA  114 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~-----l~~~~~~~a  114 (373)
                      |++++|.   ||||+.+-+..+-....      |+.++  ...+... ..+.+++||.||+..+..     .....++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve--~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v   77 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVE--KSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNV   77 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEE--EEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCce--EEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence            5778886   99999988886643322      33333  2233323 345799999999975543     356678999


Q ss_pred             cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-cccCH----H
Q psy18160        115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-RCVEY----S  189 (373)
Q Consensus       115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-~~v~~----~  189 (373)
                      +++|+|+|+.+.+-.+++..+..-+...                  . ...+++.+.+..+|+|+..+. +....    +
T Consensus        78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l------------------~-~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~  138 (232)
T PF04670_consen   78 GVLIYVFDAQSDDYDEDLAYLSDCIEAL------------------R-QYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQ  138 (232)
T ss_dssp             SEEEEEEETT-STCHHHHHHHHHHHHHH------------------H-HHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHH
T ss_pred             CEEEEEEEcccccHHHHHHHHHHHHHHH------------------H-HhCCCCeEEEEEeecccCCHHHHHHHHHHHHH
Confidence            9999999998555444444333322221                  0 135789999999999986531 11111    1


Q ss_pred             HHHHHHHHcC---CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        190 EGEAYAEENG---LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       190 e~~~~~~~~~---~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ...+.+...+   +.++.+|.-+ +.+.++|..++..+..
T Consensus       139 ~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP  177 (232)
T PF04670_consen  139 RIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIP  177 (232)
T ss_dssp             HHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred             HHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHcc
Confidence            2233344555   7799999887 6899999999887763

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.08  E-value=8.6e-10  Score=89.88  Aligned_cols=110  Identities=20%  Similarity=0.187  Sum_probs=79.5

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECC
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDIT  124 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~  124 (373)
                      +++++|+   |||+|+.||....|... ++...+                        +..+...+++.++++++||+.+
T Consensus         2 kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~------------------------~~~~~~~~~~s~~~~~~v~~~~   57 (124)
T smart00010        2 KVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG------------------------IDVYDPTSYESFDVVLQCWRVD   57 (124)
T ss_pred             EEEEECCCChhHHHHHHHHhcCCccccCceehhh------------------------hhhccccccCCCCEEEEEEEcc
Confidence            7888887   99999999988877654 321110                        3444566788999999999999


Q ss_pred             CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEE
Q psy18160        125 NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFME  204 (373)
Q Consensus       125 ~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~e  204 (373)
                      ++.+++.+  |...+..                     ....++|.++++||.|+.+. +.+..+++.        ++++
T Consensus        58 ~~~s~~~~--~~~~i~~---------------------~~k~dl~~~~~~nk~dl~~~-~~~~~~~~~--------~~~~  105 (124)
T smart00010       58 DRDSADNK--NVPEVLV---------------------GNKSDLPILVGGNRDVLEEE-RQVATEEGL--------EFAE  105 (124)
T ss_pred             CHHHHHHH--hHHHHHh---------------------cCCCCCcEEEEeechhhHhh-CcCCHHHHH--------HHHH
Confidence            99999776  7766654                     23357899999999998543 234433333        3556


Q ss_pred             EcCCCCCCHH
Q psy18160        205 TSAKTAMNVN  214 (373)
Q Consensus       205 vSak~~~gI~  214 (373)
                      +|++++.|+.
T Consensus       106 ~s~~~~~~~~  115 (124)
T smart00010      106 TSAKTPEEGE  115 (124)
T ss_pred             HhCCCcchhh
Confidence            8999999984

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.07  E-value=7e-10  Score=103.67  Aligned_cols=134  Identities=13%  Similarity=0.043  Sum_probs=80.9

Q ss_pred             EEEEcC---ChhHHHHHhhhCc--C------c---------Cc--ceeeeEEE--EEEEECCEEEEEEEEeCCCcccccc
Q psy18160         50 QIWLKD---RVDCMTQIVINVV--F------Y---------PY--LFSAAFIT--QTVCLDDVTIRFEIWDTAGQERYHT  105 (373)
Q Consensus        50 ivvlG~---GKTsLl~rl~~~~--~------~---------~~--Tig~~~~~--~~i~~~~~~v~l~i~Dt~G~e~~~~  105 (373)
                      ++++|.   |||||+++++...  .      .         +.  ..|.+...  ..+..+  ...+.+|||||+.+|..
T Consensus         2 v~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~~   79 (270)
T cd01886           2 IGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFTI   79 (270)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHHH
Confidence            567775   9999999997411  0      0         00  12222222  233333  46788999999988888


Q ss_pred             cchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc
Q psy18160        106 LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC  185 (373)
Q Consensus       106 l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~  185 (373)
                      .+..+++.+|++++|+|..+...-.. .+.+..+..                        .++|++++.||+|+......
T Consensus        80 ~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~------------------------~~~p~ivviNK~D~~~a~~~  134 (270)
T cd01886          80 EVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR------------------------YNVPRIAFVNKMDRTGADFF  134 (270)
T ss_pred             HHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH------------------------cCCCEEEEEECCCCCCCCHH
Confidence            88889999999999999987532221 223333333                        46799999999998653111


Q ss_pred             cCHHHHHHHHHHcCC-eEEEEcCCCC
Q psy18160        186 VEYSEGEAYAEENGL-LFMETSAKTA  210 (373)
Q Consensus       186 v~~~e~~~~~~~~~~-~~~evSak~~  210 (373)
                      ...++.++......+ ..+++|+..+
T Consensus       135 ~~~~~l~~~l~~~~~~~~~Pisa~~~  160 (270)
T cd01886         135 RVVEQIREKLGANPVPLQLPIGEEDD  160 (270)
T ss_pred             HHHHHHHHHhCCCceEEEeccccCCC
Confidence            112222222222212 3577887643

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.07  E-value=7.6e-10  Score=116.54  Aligned_cols=137  Identities=13%  Similarity=0.020  Sum_probs=86.8

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcC--------c------C---c--ceeee--EEEEEEEECCEEEEEEEEeCC
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVF--------Y------P---Y--LFSAA--FITQTVCLDDVTIRFEIWDTA   98 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~--------~------~---~--Tig~~--~~~~~i~~~~~~v~l~i~Dt~   98 (373)
                      +..+...++++|.   |||||+++++...-        .      +   .  ..|.+  .....+.+++  ..+.+|||+
T Consensus         6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTP   83 (689)
T TIGR00484         6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTP   83 (689)
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECC
Confidence            3445567777776   99999999974210        0      0   0  11222  2223444444  678999999


Q ss_pred             CcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCC
Q psy18160         99 GQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD  178 (373)
Q Consensus        99 G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~D  178 (373)
                      |+.+|...+..+++.+|++++|+|+++....+... ++..+..                        .++|+++++||+|
T Consensus        84 G~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~------------------------~~~p~ivviNK~D  138 (689)
T TIGR00484        84 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR------------------------YEVPRIAFVNKMD  138 (689)
T ss_pred             CCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH------------------------cCCCEEEEEECCC
Confidence            99988888888999999999999998865544332 2233333                        3679999999999


Q ss_pred             CCCCCcccCHHH-HHHHHHHcCC----eEEEEcCCCC
Q psy18160        179 LPTSRRCVEYSE-GEAYAEENGL----LFMETSAKTA  210 (373)
Q Consensus       179 l~~~~~~v~~~e-~~~~~~~~~~----~~~evSak~~  210 (373)
                      +....    .++ ..++...++.    ..+++|+..+
T Consensus       139 ~~~~~----~~~~~~~i~~~l~~~~~~~~ipis~~~~  171 (689)
T TIGR00484       139 KTGAN----FLRVVNQIKQRLGANAVPIQLPIGAEDN  171 (689)
T ss_pred             CCCCC----HHHHHHHHHHHhCCCceeEEeccccCCC
Confidence            87531    222 2333333332    2466666655

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG1145|consensus

Probab=99.06  E-value=2.3e-09  Score=105.30  Aligned_cols=132  Identities=17%  Similarity=0.113  Sum_probs=96.1

Q ss_pred             ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEE-CCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCH---
Q psy18160         56 RVDCMTQIVINVVFYPY-----LFSAAFITQTVCL-DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ---  126 (373)
Q Consensus        56 GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~---  126 (373)
                      |||||+..|-+......     |.+.--  -.+.+ +|  -.+.|.||||+.-|..|+..-.+-+|.+++|+.++|.   
T Consensus       165 GKTTLLD~lRks~VAA~E~GGITQhIGA--F~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmp  240 (683)
T KOG1145|consen  165 GKTTLLDALRKSSVAAGEAGGITQHIGA--FTVTLPSG--KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMP  240 (683)
T ss_pred             ChhhHHHHHhhCceehhhcCCccceece--EEEecCCC--CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccH
Confidence            99999999998877665     333322  23333 44  4577899999999999999999999999999999884   


Q ss_pred             hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH-------cC
Q psy18160        127 DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-------NG  199 (373)
Q Consensus       127 ~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~-------~~  199 (373)
                      .+.+.|.       .                     ....++|++|..||+|.+..    +++...+-.-.       +|
T Consensus       241 QT~EaIk-------h---------------------Ak~A~VpiVvAinKiDkp~a----~pekv~~eL~~~gi~~E~~G  288 (683)
T KOG1145|consen  241 QTLEAIK-------H---------------------AKSANVPIVVAINKIDKPGA----NPEKVKRELLSQGIVVEDLG  288 (683)
T ss_pred             hHHHHHH-------H---------------------HHhcCCCEEEEEeccCCCCC----CHHHHHHHHHHcCccHHHcC
Confidence            3333332       1                     12368999999999997653    44444333222       33


Q ss_pred             --CeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        200 --LLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       200 --~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                        .+++++||++|+|++.|-+.++-.
T Consensus       289 GdVQvipiSAl~g~nl~~L~eaill~  314 (683)
T KOG1145|consen  289 GDVQVIPISALTGENLDLLEEAILLL  314 (683)
T ss_pred             CceeEEEeecccCCChHHHHHHHHHH
Confidence              468999999999999998886543

>KOG1489|consensus

Probab=99.06  E-value=2.4e-09  Score=98.94  Aligned_cols=141  Identities=16%  Similarity=0.167  Sum_probs=99.0

Q ss_pred             ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc----cchhh---ccCCcEEEEEEEC
Q psy18160         56 RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT----LAPMY---YRNAQAAIIVYDI  123 (373)
Q Consensus        56 GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~----l~~~~---~~~ad~iilv~D~  123 (373)
                      |||||++.+...+....     |+.....  .+.+++- ..+.+-|.||.-+-..    +-..|   +..|+.++||+|+
T Consensus       208 GKSTLL~als~AKpkVa~YaFTTL~P~iG--~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~  284 (366)
T KOG1489|consen  208 GKSTLLNALSRAKPKVAHYAFTTLRPHIG--TVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDL  284 (366)
T ss_pred             cHHHHHHHhhccCCcccccceeeeccccc--eeecccc-ceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEEC
Confidence            99999999998865443     4433332  4444443 3388999999644332    33334   4579999999999


Q ss_pred             CCH---hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        124 TNQ---DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       124 ~~~---~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      +..   ..++.+.....++..+.                   ....+.|.++|+||+|+++.    ...-..++++.+.-
T Consensus       285 s~~~~~~p~~~~~lL~~ELe~ye-------------------k~L~~rp~liVaNKiD~~ea----e~~~l~~L~~~lq~  341 (366)
T KOG1489|consen  285 SGKQLRNPWQQLQLLIEELELYE-------------------KGLADRPALIVANKIDLPEA----EKNLLSSLAKRLQN  341 (366)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHh-------------------hhhccCceEEEEeccCchhH----HHHHHHHHHHHcCC
Confidence            988   77777776666665531                   23457899999999998643    11223667777665


Q ss_pred             e-EEEEcCCCCCCHHHHHHHHHH
Q psy18160        201 L-FMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       201 ~-~~evSak~~~gI~~lf~~L~~  222 (373)
                      + ++++||++++|++++.+.|-.
T Consensus       342 ~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  342 PHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             CcEEEeeeccccchHHHHHHHhh
Confidence            5 999999999999999887754

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.05  E-value=1.5e-09  Score=101.49  Aligned_cols=141  Identities=13%  Similarity=0.117  Sum_probs=88.4

Q ss_pred             EEEEcC---ChhHHHHHhhhCcCcCc---------------------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc
Q psy18160         50 QIWLKD---RVDCMTQIVINVVFYPY---------------------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT  105 (373)
Q Consensus        50 ivvlG~---GKTsLl~rl~~~~~~~~---------------------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~  105 (373)
                      ++++|.   |||||+++++...-...                     .+........+..+  .+.+.+|||+|+.+|..
T Consensus         2 i~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~~   79 (268)
T cd04170           2 IALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFVG   79 (268)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHHH
Confidence            567776   99999999975321110                     11111112233333  35688999999988877


Q ss_pred             cchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc
Q psy18160        106 LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC  185 (373)
Q Consensus       106 l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~  185 (373)
                      .+..+++.+|++++|+|.++........-| ..+..                        .++|.++++||+|+...   
T Consensus        80 ~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~------------------------~~~p~iivvNK~D~~~~---  131 (268)
T cd04170          80 ETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE------------------------AGIPRIIFINKMDRERA---  131 (268)
T ss_pred             HHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH------------------------cCCCEEEEEECCccCCC---
Confidence            788889999999999999886544322222 22222                        36799999999998653   


Q ss_pred             cCHH-HHHHHHHHcCCeE--EEEcCCCCCCHHHHHHHHH
Q psy18160        186 VEYS-EGEAYAEENGLLF--METSAKTAMNVNEIFVEIA  221 (373)
Q Consensus       186 v~~~-e~~~~~~~~~~~~--~evSak~~~gI~~lf~~L~  221 (373)
                       ..+ ...++...++.++  +.+...++.++..+.+.+.
T Consensus       132 -~~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~  169 (268)
T cd04170         132 -DFDKTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLT  169 (268)
T ss_pred             -CHHHHHHHHHHHhCCCeEEEEecccCCCceeEEEEccc
Confidence             222 2334444455543  4455677777655544443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.04  E-value=8.4e-10  Score=96.20  Aligned_cols=113  Identities=17%  Similarity=0.208  Sum_probs=71.1

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEE-CCEEEEEEEEeCCCcccccccchh---hccCCcEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCL-DDVTIRFEIWDTAGQERYHTLAPM---YYRNAQAAII  119 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~~~l~~~---~~~~ad~iil  119 (373)
                      .++++|.   |||+|+.+|..+.+.+.  ++....   ...+ +...-.+.++|+||+++.+.....   +...+.++||
T Consensus         5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf   81 (181)
T PF09439_consen    5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF   81 (181)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence            5677776   99999999999977765  332111   1122 223345789999999988764333   4789999999


Q ss_pred             EEECCC-HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160        120 VYDITN-QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       120 v~D~~~-~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  182 (373)
                      |+|.+. +..+.++.+++-.+...                  .......+|++|++||.|+...
T Consensus        82 vvDSs~~~~~~~~~Ae~Ly~iL~~------------------~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   82 VVDSSTDQKELRDVAEYLYDILSD------------------TEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEETTTHHHHHHHHHHHHHHHHHH------------------HHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEeCccchhhHHHHHHHHHHHHHh------------------hhhccCCCCEEEEEeCcccccc
Confidence            999974 45666666666555441                  0123467999999999999654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.03  E-value=1.5e-08  Score=94.14  Aligned_cols=197  Identities=16%  Similarity=0.083  Sum_probs=120.7

Q ss_pred             hhhhhhhhhhhhhccCCCCcccccc----CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEE
Q psy18160         16 EYALTVRVLKLKTQIPKGNWFSMMS----GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTV   83 (373)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i   83 (373)
                      -.+++.+..++|.++......+--.    .-.++....++++|-   |||||++++++.+-...     |..  ...-.+
T Consensus        28 ig~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~--~VPG~l  105 (365)
T COG1163          28 IGLLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLE--PVPGML  105 (365)
T ss_pred             HHHHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecc--cccceE
Confidence            3477788877777765531111111    123445567888884   99999999998754433     222  122345


Q ss_pred             EECCEEEEEEEEeCCCcccccc-------cchhhccCCcEEEEEEECCCHhh-HHHHHHHHHHHHhhCC---CCC-----
Q psy18160         84 CLDDVTIRFEIWDTAGQERYHT-------LAPMYYRNAQAAIIVYDITNQDT-FGRAKSWVKELQRMAP---PNI-----  147 (373)
Q Consensus        84 ~~~~~~v~l~i~Dt~G~e~~~~-------l~~~~~~~ad~iilv~D~~~~~S-f~~i~~~l~~i~~~~~---~~~-----  147 (373)
                      +++|  ..+|+.|+||.-+-.+       ..-..+|+||++++|.|+....+ .+.+.+-+...--...   .++     
T Consensus       106 ~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk  183 (365)
T COG1163         106 EYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKK  183 (365)
T ss_pred             eecC--ceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEe
Confidence            5555  6789999998533222       23345789999999999987665 4444433332210000   000     


Q ss_pred             -------Cc------------------------------ccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160        148 -------DT------------------------------FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE  190 (373)
Q Consensus       148 -------~~------------------------------~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e  190 (373)
                             ..                              -....++++.+... ..-+|.++|.||.|+..      .++
T Consensus       184 ~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~n-rvY~p~l~v~NKiD~~~------~e~  256 (365)
T COG1163         184 ESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGN-RVYKPALYVVNKIDLPG------LEE  256 (365)
T ss_pred             ccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhc-ceeeeeEEEEecccccC------HHH
Confidence                   00                              01112222333222 23579999999999854      456


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       191 ~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ...+.+..  .++.+||+.+.|++++.+.|.+.+.
T Consensus       257 ~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         257 LERLARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             HHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence            66666654  7899999999999999999988764

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.02  E-value=3.4e-09  Score=105.89  Aligned_cols=147  Identities=18%  Similarity=0.109  Sum_probs=90.5

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhC--c--------------------C-----cCc-----ceeeeEEEEEEEECCEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINV--V--------------------F-----YPY-----LFSAAFITQTVCLDDVT   89 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~--~--------------------~-----~~~-----Tig~~~~~~~i~~~~~~   89 (373)
                      ...+.++++|.   |||||+.+++..  .                    +     .+.     ..|.+.......+..+.
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            44578889997   999999999751  0                    0     011     11222222223334445


Q ss_pred             EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHh---hH---HHHHHHHHHHHhhCCCCCCcccccchhHHhhhhc
Q psy18160         90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD---TF---GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRM  163 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~---Sf---~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      ..+.|+||||+++|.......+..+|++++|+|.++..   .|   ....+.+..+..                      
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----------------------  142 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----------------------  142 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----------------------
Confidence            67899999999998776667788999999999998642   11   111222222222                      


Q ss_pred             CCCCCe-EEEEEeCCCCCCC----Cc-ccCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q psy18160        164 APPNIV-IALAGNKADLPTS----RR-CVEYSEGEAYAEENG-----LLFMETSAKTAMNVNE  215 (373)
Q Consensus       164 ~~~~~p-iilVgnK~Dl~~~----~~-~v~~~e~~~~~~~~~-----~~~~evSak~~~gI~~  215 (373)
                        .++| ++++.||+|....    .+ ..-.++..++....+     ++++++||.+|+|+.+
T Consensus       143 --~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        143 --LGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             --cCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence              3445 7799999995321    01 011233444444443     5799999999999864

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.01  E-value=6.5e-09  Score=102.04  Aligned_cols=77  Identities=18%  Similarity=0.096  Sum_probs=52.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEE-------------------ECC-EEEEEEEEeCCC
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVC-------------------LDD-VTIRFEIWDTAG   99 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~-------------------~~~-~~v~l~i~Dt~G   99 (373)
                      ++++++|.   |||||+|++++..+...     |+........+.                   .++ ..+.+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            46788886   99999999998876532     332222111110                   111 236799999999


Q ss_pred             c----ccccccchhh---ccCCcEEEEEEECC
Q psy18160        100 Q----ERYHTLAPMY---YRNAQAAIIVYDIT  124 (373)
Q Consensus       100 ~----e~~~~l~~~~---~~~ad~iilv~D~~  124 (373)
                      .    ++...+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            5    4445566666   88999999999997

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.01  E-value=6.7e-10  Score=95.14  Aligned_cols=84  Identities=13%  Similarity=0.044  Sum_probs=55.4

Q ss_pred             cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH-HH
Q psy18160        115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG-EA  193 (373)
Q Consensus       115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~-~~  193 (373)
                      |.+++|+|+.++.+...  .++.. ..                     ....+.|+++|.||+|+... .  ...+. ..
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~---------------------~~~~~~p~IiVlNK~Dl~~~-~--~~~~~~~~   53 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VL---------------------IKEKGKKLILVLNKADLVPK-E--VLRKWLAY   53 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HH---------------------HhcCCCCEEEEEechhcCCH-H--HHHHHHHH
Confidence            78999999988765432  22221 01                     11256899999999998542 1  11111 12


Q ss_pred             HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       194 ~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +.+..+..++.+||+++.|++++++.+.+...
T Consensus        54 ~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~~~   85 (155)
T cd01849          54 LRHSYPTIPFKISATNGQGIEKKESAFTKQTN   85 (155)
T ss_pred             HHhhCCceEEEEeccCCcChhhHHHHHHHHhH
Confidence            33334567899999999999999999877653

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.01  E-value=6.7e-09  Score=100.31  Aligned_cols=156  Identities=14%  Similarity=0.133  Sum_probs=110.6

Q ss_pred             CcEEEEEEcC-ChhHHHHHhhhC--cCcCc---------------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc
Q psy18160         46 DCMAQIWLKD-RVDCMTQIVINV--VFYPY---------------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA  107 (373)
Q Consensus        46 ~~i~ivvlG~-GKTsLl~rl~~~--~~~~~---------------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~  107 (373)
                      .-+.|+.-.+ |||||+..++..  .|...               ..|.+...|...++-+.++++|.||+|+..|..-.
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            3466777777 999999999853  23322               55666667776666666889999999999999999


Q ss_pred             hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccC
Q psy18160        108 PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE  187 (373)
Q Consensus       108 ~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~  187 (373)
                      ...+.-.|++++++|+.+..=-+ -.-.+.....                        .+.+.|||.||.|.+..+...-
T Consensus        86 ERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~------------------------~gL~PIVVvNKiDrp~Arp~~V  140 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALA------------------------LGLKPIVVINKIDRPDARPDEV  140 (603)
T ss_pred             hhhhhhcceEEEEEEcccCCCCc-hhhhHHHHHH------------------------cCCCcEEEEeCCCCCCCCHHHH
Confidence            99999999999999998733111 0101122222                        4667789999999987633333


Q ss_pred             HHHHHHHHH-------HcCCeEEEEcCCCCC----------CHHHHHHHHHHHcch
Q psy18160        188 YSEGEAYAE-------ENGLLFMETSAKTAM----------NVNEIFVEIAKKLPK  226 (373)
Q Consensus       188 ~~e~~~~~~-------~~~~~~~evSak~~~----------gI~~lf~~L~~~i~~  226 (373)
                      .++...+.-       ++.+|++..|++.|.          ++..||+.|++.+..
T Consensus       141 vd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         141 VDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA  196 (603)
T ss_pred             HHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence            344444443       345789999998774          688899999888864

>KOG0083|consensus

Probab=98.99  E-value=2.6e-10  Score=92.15  Aligned_cols=54  Identities=31%  Similarity=0.457  Sum_probs=48.9

Q ss_pred             EEEccCccccceeeEEeeeCcccc-cccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        301 VLLGESAVGKSSLVLRFVRGQFHE-YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       301 ~~iG~~~vGks~l~~~~~~~~f~~-~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +++|++++|||||+.||..+.|-. .+.+|+|        +||..|.+.+|+++|+|||||.|
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvg--------id~rnkli~~~~~kvklqiwdta   55 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVG--------IDFRNKLIDMDDKKVKLQIWDTA   55 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeee--------eccccceeccCCcEEEEEEeecc
Confidence            368999999999999999999865 6899999        77778888899999999999987

>PRK13796 GTPase YqeH; Provisional

Probab=98.99  E-value=7.3e-10  Score=107.93  Aligned_cols=92  Identities=28%  Similarity=0.366  Sum_probs=61.0

Q ss_pred             cccccchhhccCCc-EEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCC
Q psy18160        102 RYHTLAPMYYRNAQ-AAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP  180 (373)
Q Consensus       102 ~~~~l~~~~~~~ad-~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~  180 (373)
                      .|..+... +..++ .+++|+|+.|..     ..|...+.+                     . ..+.|+++|+||+|+.
T Consensus        58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~-----~s~~~~L~~---------------------~-~~~kpviLViNK~DLl  109 (365)
T PRK13796         58 DFLKLLNG-IGDSDALVVNVVDIFDFN-----GSWIPGLHR---------------------F-VGNNPVLLVGNKADLL  109 (365)
T ss_pred             HHHHHHHh-hcccCcEEEEEEECccCC-----CchhHHHHH---------------------H-hCCCCEEEEEEchhhC
Confidence            34443333 34455 999999997743     234444444                     1 1367899999999996


Q ss_pred             CCCcccCHHHHHH----HHHHcCC---eEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        181 TSRRCVEYSEGEA----YAEENGL---LFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       181 ~~~~~v~~~e~~~----~~~~~~~---~~~evSak~~~gI~~lf~~L~~~  223 (373)
                      .  +.+..++..+    +++.+++   .++.+||+++.|++++++.|.+.
T Consensus       110 ~--~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        110 P--KSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             C--CccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            5  2333444433    3556676   58999999999999999998653

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=98.98  E-value=2e-10  Score=101.18  Aligned_cols=58  Identities=19%  Similarity=0.295  Sum_probs=53.6

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|+++||||+|+.||+.+.|...|.||+|        .+|. +.+.+++..++|+|||+|
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~--------~~~~-~~~~~~~~~~~l~iwDta   61 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF--------ENYT-ASFEIDTQRIELSLWDTS   61 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCcee--------eeeE-EEEEECCEEEEEEEEECC
Confidence            468999999999999999999999999999999999        6664 678899999999999997

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0097|consensus

Probab=98.98  E-value=1.7e-10  Score=93.99  Aligned_cols=63  Identities=21%  Similarity=0.327  Sum_probs=58.1

Q ss_pred             cccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        292 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       292 ~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+....||.+++|+-|||||||+.+|....|..+...|||        ++|....+.|.|++|+|||||.|
T Consensus         6 ynysyifkyiiigdmgvgkscllhqftekkfmadcphtig--------vefgtriievsgqkiklqiwdta   68 (215)
T KOG0097|consen    6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG--------VEFGTRIIEVSGQKIKLQIWDTA   68 (215)
T ss_pred             cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccc--------eecceeEEEecCcEEEEEEeecc
Confidence            3445679999999999999999999999999999999999        88888888899999999999987

>KOG0081|consensus

Probab=98.97  E-value=1.7e-10  Score=95.87  Aligned_cols=68  Identities=19%  Similarity=0.324  Sum_probs=55.7

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceee-e-CCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKN-R-LNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~-v-~~~~~~l~iw~~~  362 (373)
                      .++.+|++.+|++|||||+++.||..+.|..++.+|+|+||+.|. +-|.+.-=. . .+++|.|||||.|
T Consensus         6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKr-vvY~s~gp~g~gr~~rihLQlWDTA   75 (219)
T KOG0081|consen    6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKR-VVYNSSGPGGGGRGQRIHLQLWDTA   75 (219)
T ss_pred             HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccce-EEEeccCCCCCCcceEEEEeeeccc
Confidence            356688899999999999999999999999999999998888888 434322211 1 2679999999997

>PRK12740 elongation factor G; Reviewed

Probab=98.97  E-value=4e-09  Score=110.94  Aligned_cols=99  Identities=13%  Similarity=0.114  Sum_probs=67.9

Q ss_pred             ChhHHHHHhhhCcC--------------cCc-------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCC
Q psy18160         56 RVDCMTQIVINVVF--------------YPY-------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNA  114 (373)
Q Consensus        56 GKTsLl~rl~~~~~--------------~~~-------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~a  114 (373)
                      |||||+++++...-              ...       .+........+.++  .+.+.+|||+|+.+|...+..+++.+
T Consensus         7 GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~~~l~~a   84 (668)
T PRK12740          7 GKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVERALRVL   84 (668)
T ss_pred             cHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHHHHHHHh
Confidence            99999999954211              000       11122222334444  46789999999988877788889999


Q ss_pred             cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160        115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT  181 (373)
Q Consensus       115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  181 (373)
                      |++++|+|.++.........| ..+..                        .++|+++|+||+|+..
T Consensus        85 D~vllvvd~~~~~~~~~~~~~-~~~~~------------------------~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         85 DGAVVVVCAVGGVEPQTETVW-RQAEK------------------------YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             CeEEEEEeCCCCcCHHHHHHH-HHHHH------------------------cCCCEEEEEECCCCCC
Confidence            999999999887655543323 23322                        3679999999999864

>cd04128 Spg1 Spg1p

Probab=98.97  E-value=2.3e-10  Score=100.78  Aligned_cols=57  Identities=28%  Similarity=0.483  Sum_probs=53.6

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|+.+||||+|+.||+.+.|...|.||+|        .+|..+.+.++|..+.|+|||++
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g--------~~~~~~~i~~~~~~~~l~iwDt~   57 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLG--------VNFMEKTISIRGTEITFSIWDLG   57 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--------eEEEEEEEEECCEEEEEEEEeCC
Confidence            5899999999999999999999999999999999        78877788899999999999987

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=98.97  E-value=3.1e-10  Score=103.60  Aligned_cols=60  Identities=17%  Similarity=0.256  Sum_probs=54.5

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ....+|++++|+++||||+|+.||+.+.|...|.||+|        .+|. +.+.+++..+.|+|||++
T Consensus        10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~--------~~~~-~~i~~~~~~v~l~iwDTa   69 (232)
T cd04174          10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF--------ENYT-AGLETEEQRVELSLWDTS   69 (232)
T ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCcee--------eeeE-EEEEECCEEEEEEEEeCC
Confidence            34578999999999999999999999999999999999        6774 567899999999999997

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.96  E-value=2.9e-09  Score=112.48  Aligned_cols=111  Identities=14%  Similarity=0.028  Sum_probs=78.1

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhC---------------cCcCc------ceeeeEEEEEEEECCEEEEEEEEeCCCcc
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINV---------------VFYPY------LFSAAFITQTVCLDDVTIRFEIWDTAGQE  101 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~---------------~~~~~------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e  101 (373)
                      ...+++++|.   |||||+++|+..               .+.+.      |+...+....+.+++..+.+.+|||||+.
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            3457788886   999999999752               22221      55544444444567778899999999999


Q ss_pred             cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160        102 RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT  181 (373)
Q Consensus       102 ~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  181 (373)
                      +|.......++.+|++++|+|+.+....+...-| ..+..                        .+.|+++++||+|...
T Consensus        98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~------------------------~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK------------------------ENVKPVLFINKVDRLI  152 (720)
T ss_pred             ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH------------------------cCCCEEEEEEChhccc
Confidence            9988888899999999999999774322221112 22222                        3567889999999854

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG0393|consensus

Probab=98.95  E-value=7.6e-10  Score=97.07  Aligned_cols=57  Identities=21%  Similarity=0.274  Sum_probs=53.1

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeC-CeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRL-NNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~-~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+..|..+.|.+.|.||++        .+| +..+.|| |+.|.|.|||.|
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF--------dny-s~~v~V~dg~~v~L~LwDTA   61 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF--------DNY-SANVTVDDGKPVELGLWDTA   61 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccCcCcccccCeEE--------ccc-eEEEEecCCCEEEEeeeecC
Confidence            58999999999999999999999999999999998        566 4889995 999999999998

>cd04131 Rnd Rnd subfamily

Probab=98.93  E-value=4e-10  Score=98.82  Aligned_cols=56  Identities=16%  Similarity=0.267  Sum_probs=52.4

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|+++||||+|+.+|+.+.|...|.||+|        .+|. +.+.+++..+.|+|||++
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~--------~~~~-~~~~~~~~~~~l~iwDt~   57 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVF--------ENYT-ASFEIDEQRIELSLWDTS   57 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceE--------EEEE-EEEEECCEEEEEEEEECC
Confidence            7999999999999999999999999999999999        6774 778899999999999997

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0091|consensus

Probab=98.93  E-value=1.5e-10  Score=96.69  Aligned_cols=59  Identities=31%  Similarity=0.555  Sum_probs=53.4

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceee-eCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKN-RLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~-v~~~~~~l~iw~~~  362 (373)
                      +++++++||++.||||||+.+|..+.|.+--+||+|        +||....+. -+|..|+|||||.|
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvg--------vdffarlie~~pg~riklqlwdta   66 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVG--------VDFFARLIELRPGYRIKLQLWDTA   66 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccc--------hHHHHHHHhcCCCcEEEEEEeecc
Confidence            578999999999999999999999999999999999        777766665 46999999999998

>cd04120 Rab12 Rab12 subfamily

Probab=98.92  E-value=4e-10  Score=100.84  Aligned_cols=56  Identities=25%  Similarity=0.459  Sum_probs=52.7

Q ss_pred             EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .++++|+.+||||||+.||+.+.|...|.+|+|        .+|..+.+.++|+.+.|+|||++
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~--------~~~~~~~i~~~~~~v~l~iwDta   57 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVG--------VDFKIKTVELRGKKIRLQIWDTA   57 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcce--------eEEEEEEEEECCEEEEEEEEeCC
Confidence            579999999999999999999999999999999        88877888899999999999997

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04133 Rop_like Rop subfamily

Probab=98.90  E-value=5.8e-10  Score=97.65  Aligned_cols=56  Identities=23%  Similarity=0.274  Sum_probs=51.5

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|+++||||+|+.||+.+.|...|.||+|        .+|. +.+.++|..++|+|||++
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~--------~~~~-~~~~~~~~~v~l~i~Dt~   57 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--------DNFS-ANVSVDGNTVNLGLWDTA   57 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcce--------eeeE-EEEEECCEEEEEEEEECC
Confidence            6899999999999999999999999999999999        6664 667789999999999987

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PRK12739 elongation factor G; Reviewed

Probab=98.90  E-value=1.8e-08  Score=106.20  Aligned_cols=109  Identities=13%  Similarity=0.039  Sum_probs=73.2

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhC-----c---CcC------------c-ceeeeEEEEEEEECCEEEEEEEEeCCCcc
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINV-----V---FYP------------Y-LFSAAFITQTVCLDDVTIRFEIWDTAGQE  101 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~-----~---~~~------------~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e  101 (373)
                      ....++++|.   |||||+++++..     .   ...            . .+..+.....+.+++  ..+.++||||+.
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~   84 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHV   84 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHH
Confidence            4556777776   999999999742     1   010            0 122222233444544  568899999998


Q ss_pred             cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160        102 RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT  181 (373)
Q Consensus       102 ~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  181 (373)
                      .|...+...++.+|++++|+|..+...-... ..+..+..                        .++|++++.||+|+..
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~------------------------~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK------------------------YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH------------------------cCCCEEEEEECCCCCC
Confidence            8877788889999999999999876433222 22233333                        4678999999999864

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.90  E-value=2.7e-08  Score=80.62  Aligned_cols=74  Identities=9%  Similarity=0.012  Sum_probs=50.1

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc---------cchhh
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT---------LAPMY  110 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~---------l~~~~  110 (373)
                      +++++|.   |||||+|++++......      |...  ....+.+++..+  .++||+|...-..         .....
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~--~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~   76 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDP--VYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQ   76 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSE--EEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeee--eeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHH
Confidence            5788887   99999999998643222      3333  234556677664  6999999642111         12223


Q ss_pred             ccCCcEEEEEEECCCH
Q psy18160        111 YRNAQAAIIVYDITNQ  126 (373)
Q Consensus       111 ~~~ad~iilv~D~~~~  126 (373)
                      +..+|++++|+|.+++
T Consensus        77 ~~~~d~ii~vv~~~~~   92 (116)
T PF01926_consen   77 ISKSDLIIYVVDASNP   92 (116)
T ss_dssp             HCTESEEEEEEETTSH
T ss_pred             HHHCCEEEEEEECCCC
Confidence            4799999999998774

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.89  E-value=4.4e-08  Score=91.37  Aligned_cols=147  Identities=15%  Similarity=0.128  Sum_probs=94.0

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCc-c----cccccchh---hcc
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQ-E----RYHTLAPM---YYR  112 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~-e----~~~~l~~~---~~~  112 (373)
                      -+++-|-   |||||++.+++.+....     |-++...  .+  +.+..++|++||||. +    +.+.+=.+   .++
T Consensus       170 TivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG--hf--e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~  245 (346)
T COG1084         170 TIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG--HF--ERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR  245 (346)
T ss_pred             eEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe--ee--ecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence            4444443   99999999999876554     3333322  22  224457899999995 1    11111111   122


Q ss_pred             -CCcEEEEEEECCCHh--hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160        113 -NAQAAIIVYDITNQD--TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS  189 (373)
Q Consensus       113 -~ad~iilv~D~~~~~--Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~  189 (373)
                       =+++++|+||.+...  +.+.-...+.++..                     ...  .|+++|.||.|+.+.   ...+
T Consensus       246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~---------------------~f~--~p~v~V~nK~D~~~~---e~~~  299 (346)
T COG1084         246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKE---------------------LFK--APIVVVINKIDIADE---EKLE  299 (346)
T ss_pred             HhcCeEEEEEcCccccCCCHHHHHHHHHHHHH---------------------hcC--CCeEEEEecccccch---hHHH
Confidence             368999999998754  56666677777766                     222  799999999998754   2233


Q ss_pred             HHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        190 EGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       190 e~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++......-+ .....+++..+.+++.+-..+.....
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~  336 (346)
T COG1084         300 EIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTAL  336 (346)
T ss_pred             HHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhh
Confidence            4433333334 44778899999999988877766543

>cd04121 Rab40 Rab40 subfamily

Probab=98.89  E-value=7.9e-10  Score=97.95  Aligned_cols=59  Identities=20%  Similarity=0.260  Sum_probs=54.8

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|+.+||||+|+.+|..+.|...|.||+|        .+|..+.+.+++..++|+|||++
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~--------~~~~~~~i~~~~~~~~l~iwDt~   63 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMG--------IDYKTTTILLDGRRVKLQLWDTS   63 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcce--------eEEEEEEEEECCEEEEEEEEeCC
Confidence            458999999999999999999999999999999999        77777788899999999999997

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG1191|consensus

Probab=98.89  E-value=4e-09  Score=102.67  Aligned_cols=166  Identities=11%  Similarity=0.009  Sum_probs=103.9

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCccc-cccc--------chhhccC
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQER-YHTL--------APMYYRN  113 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~-~~~l--------~~~~~~~  113 (373)
                      +.++++|.   |||||+|.+.+.+....  -.|.+....+..++-+.+.+.+.||+|.-+ -...        ...-++.
T Consensus       269 l~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~  348 (531)
T KOG1191|consen  269 LQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIER  348 (531)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhh
Confidence            78999997   99999999999988877  334333333333333335577889999644 1111        2234678


Q ss_pred             CcEEEEEEEC--CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160        114 AQAAIIVYDI--TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG  191 (373)
Q Consensus       114 ad~iilv~D~--~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~  191 (373)
                      ||.+++|+|+  ++-++-..+.+.+.......      ....         +.....|++++.||.|+...-+...... 
T Consensus       349 advi~~vvda~~~~t~sd~~i~~~l~~~~~g~------~~~~---------~~~~~~~~i~~~nk~D~~s~~~~~~~~~-  412 (531)
T KOG1191|consen  349 ADVILLVVDAEESDTESDLKIARILETEGVGL------VVIV---------NKMEKQRIILVANKSDLVSKIPEMTKIP-  412 (531)
T ss_pred             cCEEEEEecccccccccchHHHHHHHHhccce------EEEe---------ccccccceEEEechhhccCccccccCCc-
Confidence            9999999999  44444445555555443310      0011         1224578999999999976422111110 


Q ss_pred             HHHHHHc---CCe-EEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        192 EAYAEEN---GLL-FMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       192 ~~~~~~~---~~~-~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      ..+....   .++ ..++|+++++|+++|...|.+.+...-.
T Consensus       413 ~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  413 VVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             eeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            0111111   133 4569999999999999999988875544

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=98.89  E-value=6.7e-10  Score=100.79  Aligned_cols=56  Identities=14%  Similarity=0.256  Sum_probs=51.8

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|+++||||+|+.+|..+.|.+.|.||++        .+|. ..+.++++.+.|+|||++
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~--------~~~~-~~~~~~~~~v~L~iwDt~   57 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVF--------ENYT-ASFEIDKRRIELNMWDTS   57 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccc--------cceE-EEEEECCEEEEEEEEeCC
Confidence            7999999999999999999999999999999999        6664 677889999999999986

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PRK00007 elongation factor G; Reviewed

Probab=98.88  E-value=1.6e-08  Score=106.45  Aligned_cols=112  Identities=14%  Similarity=0.065  Sum_probs=73.0

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhh--Cc------Cc------Cc-----c--eeeeEEEEEEEECCEEEEEEEEeCC
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVIN--VV------FY------PY-----L--FSAAFITQTVCLDDVTIRFEIWDTA   98 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~--~~------~~------~~-----T--ig~~~~~~~i~~~~~~v~l~i~Dt~   98 (373)
                      +.++...++++|.   |||||+++++.  +.      ..      +.     .  +..+.....+.+++  ..+.+.|||
T Consensus         6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTP   83 (693)
T PRK00007          6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTP   83 (693)
T ss_pred             cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCC
Confidence            3445667777776   99999999973  11      11      00     1  22222223344444  568899999


Q ss_pred             CcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCC
Q psy18160         99 GQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD  178 (373)
Q Consensus        99 G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~D  178 (373)
                      |+..|.......++.+|++++|+|.......+... .+..+..                        .++|++++.||+|
T Consensus        84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~------------------------~~~p~iv~vNK~D  138 (693)
T PRK00007         84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK------------------------YKVPRIAFVNKMD  138 (693)
T ss_pred             CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH------------------------cCCCEEEEEECCC
Confidence            99887666666788999999999987664433322 2233333                        3578899999999


Q ss_pred             CCC
Q psy18160        179 LPT  181 (373)
Q Consensus       179 l~~  181 (373)
                      +..
T Consensus       139 ~~~  141 (693)
T PRK00007        139 RTG  141 (693)
T ss_pred             CCC
Confidence            864

>cd01875 RhoG RhoG subfamily

Probab=98.88  E-value=8.1e-10  Score=97.94  Aligned_cols=57  Identities=21%  Similarity=0.280  Sum_probs=52.1

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|+.+||||+|+.||+.+.|.+.|.||+|        .+|. +.+.++++.+.|+|||++
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~   59 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVF--------DNYS-AQTAVDGRTVSLNLWDTA   59 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceE--------eeeE-EEEEECCEEEEEEEEECC
Confidence            38999999999999999999999999999999999        6664 567789999999999997

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG1707|consensus

Probab=98.84  E-value=5.8e-08  Score=96.35  Aligned_cols=152  Identities=16%  Similarity=0.173  Sum_probs=112.6

Q ss_pred             cEEEEEEcC----ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         47 CMAQIWLKD----RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        47 ~i~ivvlG~----GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      .++.+++.|    |||.|++.|+++.+...   +....+....+.+.|..-.+.+-|.+-. ....+...- ..||.+.+
T Consensus       424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~  501 (625)
T KOG1707|consen  424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACL  501 (625)
T ss_pred             eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence            345555544    99999999999888766   6666677777777777777888887754 333333333 67999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      +||.+++.||+.+.+.++....                       ...+|+++|++|+|+.+......... .+++++++
T Consensus       502 ~YDsS~p~sf~~~a~v~~~~~~-----------------------~~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~  557 (625)
T KOG1707|consen  502 VYDSSNPRSFEYLAEVYNKYFD-----------------------LYKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLG  557 (625)
T ss_pred             ecccCCchHHHHHHHHHHHhhh-----------------------ccCCceEEEeeccccchhhhccCCCh-HHHHHhcC
Confidence            9999999999988766554433                       26899999999999977533344444 78999999


Q ss_pred             Ce-EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        200 LL-FMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       200 ~~-~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++ ...+|.+.... .++|..|+....
T Consensus       558 i~~P~~~S~~~~~s-~~lf~kL~~~A~  583 (625)
T KOG1707|consen  558 LPPPIHISSKTLSS-NELFIKLATMAQ  583 (625)
T ss_pred             CCCCeeeccCCCCC-chHHHHHHHhhh
Confidence            85 57788885334 899999987765

>cd01874 Cdc42 Cdc42 subfamily

Probab=98.84  E-value=1.3e-09  Score=95.19  Aligned_cols=56  Identities=20%  Similarity=0.247  Sum_probs=51.4

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|+++||||+|+.+|+.+.|...|.||+|        .+|. +.+.+++.++.|+|||++
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~--------~~~~-~~~~~~~~~~~l~i~Dt~   57 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF--------DNYA-VTVMIGGEPYTLGLFDTA   57 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee--------eeeE-EEEEECCEEEEEEEEECC
Confidence            6899999999999999999999999999999999        6664 567789999999999997

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=98.83  E-value=1.4e-09  Score=94.49  Aligned_cols=56  Identities=27%  Similarity=0.479  Sum_probs=52.6

Q ss_pred             EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      |++++|++++|||+|++||+.+.|...|.||+|        .+|..+.+.++|..+.++|||++
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~Dt~   57 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIG--------VDFEMERFEILGVPFSLQLWDTA   57 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--------eEEEEEEEEECCEEEEEEEEeCC
Confidence            789999999999999999999999999999999        78877788889999999999986

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>KOG0088|consensus

Probab=98.82  E-value=4.3e-10  Score=93.46  Aligned_cols=61  Identities=36%  Similarity=0.469  Sum_probs=57.7

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+||++++|++.||||+|+-||+.+.|+..+.+|+-        .+|..+++.|+|....|+|||.|
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQ--------ASF~~kk~n~ed~ra~L~IWDTA   70 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQ--------ASFQNKKVNVEDCRADLHIWDTA   70 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHH--------HHHhhcccccccceeeeeeeecc
Confidence            45789999999999999999999999999999999999        78888999999999999999998

>PRK01889 GTPase RsgA; Reviewed

Probab=98.81  E-value=7.3e-09  Score=100.58  Aligned_cols=82  Identities=13%  Similarity=0.112  Sum_probs=61.9

Q ss_pred             ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160        111 YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE  190 (373)
Q Consensus       111 ~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e  190 (373)
                      ..++|.+++|+++..+-+...+++++..+..                        .++|.+||.||+||.+. .   .+.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~------------------------~~i~piIVLNK~DL~~~-~---~~~  161 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE------------------------SGAEPVIVLTKADLCED-A---EEK  161 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH------------------------cCCCEEEEEEChhcCCC-H---HHH
Confidence            5899999999999765666778888887766                        46778999999999653 1   111


Q ss_pred             HHHHHH-HcCCeEEEEcCCCCCCHHHHHHHH
Q psy18160        191 GEAYAE-ENGLLFMETSAKTAMNVNEIFVEI  220 (373)
Q Consensus       191 ~~~~~~-~~~~~~~evSak~~~gI~~lf~~L  220 (373)
                      ...+.. ..+++++.+|++++.|++++...|
T Consensus       162 ~~~~~~~~~g~~Vi~vSa~~g~gl~~L~~~L  192 (356)
T PRK01889        162 IAEVEALAPGVPVLAVSALDGEGLDVLAAWL  192 (356)
T ss_pred             HHHHHHhCCCCcEEEEECCCCccHHHHHHHh
Confidence            122222 347899999999999999988776

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.80  E-value=2.8e-08  Score=79.76  Aligned_cols=132  Identities=18%  Similarity=0.097  Sum_probs=91.2

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc----chhhccCCcEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL----APMYYRNAQAAIIV  120 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l----~~~~~~~ad~iilv  120 (373)
                      +++++|.   |||||++.+-+...... |..++|       +++.    .+||+|.-.-...    ......++|.+++|
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve~-------~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v   71 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVEF-------NDKG----DIDTPGEYFEHPRWYHALITTLQDADVIIYV   71 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhhcccceeec-------cCcc----ccCCchhhhhhhHHHHHHHHHhhccceeeee
Confidence            5677776   99999999988765554 544443       3321    4699984211111    22335689999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      -.+++++|--.-     .+                       ......|+|=|.+|.||.++   .+.+..++|..+-|.
T Consensus        72 ~~and~~s~f~p-----~f-----------------------~~~~~k~vIgvVTK~DLaed---~dI~~~~~~L~eaGa  120 (148)
T COG4917          72 HAANDPESRFPP-----GF-----------------------LDIGVKKVIGVVTKADLAED---ADISLVKRWLREAGA  120 (148)
T ss_pred             ecccCccccCCc-----cc-----------------------ccccccceEEEEecccccch---HhHHHHHHHHHHcCC
Confidence            999988752110     00                       11234568999999999864   455667778887775


Q ss_pred             -eEEEEcCCCCCCHHHHHHHHHH
Q psy18160        201 -LFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       201 -~~~evSak~~~gI~~lf~~L~~  222 (373)
                       ++|++|+.++.||++++..|..
T Consensus       121 ~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917         121 EPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             cceEEEeccCcccHHHHHHHHHh
Confidence             6999999999999999998864

>KOG0705|consensus

Probab=98.79  E-value=2e-08  Score=98.54  Aligned_cols=156  Identities=14%  Similarity=0.263  Sum_probs=121.4

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..+++.++|.   |||+|++||+.+.|...  +.|..| .+.+.+++....+.+.|.+|..     ...|...+|++|||
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~-kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv  102 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRF-KKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV  102 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccCCcCccc-eeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence            4578899998   99999999999999988  666665 5777888888899999998832     35677889999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-CcccCHHHHHHHHHH-c
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-RRCVEYSEGEAYAEE-N  198 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-~~~v~~~e~~~~~~~-~  198 (373)
                      |.+.+..+|+.+..+...+..+                    .....+|+++++++.-.... .+.+...++.+++.+ .
T Consensus       103 f~~~d~~s~q~v~~l~~~l~~~--------------------r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~k  162 (749)
T KOG0705|consen  103 FSVEDEQSFQAVQALAHEMSSY--------------------RNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMK  162 (749)
T ss_pred             EEeccccCHHHHHHHHhhcccc--------------------cccccchHHhhcCcchhhcccccccchHHHHHHHHhcC
Confidence            9999999999998776665441                    23467899999998654322 244555555555444 4


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      .+.||+++|..|.+++..|+.++..+...
T Consensus       163 rcsy~et~atyGlnv~rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  163 RCSYYETCATYGLNVERVFQEVAQKIVQL  191 (749)
T ss_pred             ccceeecchhhhhhHHHHHHHHHHHHHHH
Confidence            57899999999999999999988776544

>PLN03110 Rab GTPase; Provisional

Probab=98.77  E-value=4.1e-09  Score=95.36  Aligned_cols=60  Identities=33%  Similarity=0.467  Sum_probs=55.4

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+|++++|+++||||+|+.+|..+.|...|.||+|        .+|..+.+.+++..+.++|||++
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g--------~~~~~~~v~~~~~~~~l~l~Dt~   69 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIG--------VEFATRTLQVEGKTVKAQIWDTA   69 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--------EEEEEEEEEECCEEEEEEEEECC
Confidence            3568999999999999999999999999999999999        88877888899999999999986

>KOG0090|consensus

Probab=98.77  E-value=3.2e-08  Score=86.74  Aligned_cols=152  Identities=18%  Similarity=0.172  Sum_probs=96.8

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhcc---CCcEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYR---NAQAAIIV  120 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~---~ad~iilv  120 (373)
                      .++++|-   |||+|+-++..+.+...  ++...  .....++...  +.++|.||+++.+.-...++.   .+-+++||
T Consensus        40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn--~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV  115 (238)
T KOG0090|consen   40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPN--EATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV  115 (238)
T ss_pred             cEEEEecCCCCceeeeeehhcCCccCeeeeeccc--eeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence            4555554   99999999999977765  33222  2233344333  789999999988776667776   79999999


Q ss_pred             EECCC-HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc-----CHHHHHHH
Q psy18160        121 YDITN-QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV-----EYSEGEAY  194 (373)
Q Consensus       121 ~D~~~-~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v-----~~~e~~~~  194 (373)
                      +|..- .....++.+++-.+....                  +-....+|++|+.||.|+.......     -..|+..+
T Consensus       116 VDSa~f~k~vrdvaefLydil~~~------------------~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~l  177 (238)
T KOG0090|consen  116 VDSATFLKNVRDVAEFLYDILLDS------------------RVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKL  177 (238)
T ss_pred             EeccccchhhHHHHHHHHHHHHhh------------------ccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHH
Confidence            99753 344555555555544310                  0123578999999999986541100     00011000


Q ss_pred             ------------------------------H--HHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        195 ------------------------------A--EENGLLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       195 ------------------------------~--~~~~~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                                                    .  ....+.|.+.|++++ +++++-+||.+.
T Consensus       178 r~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  178 RESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             HHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                                          0  011245889999988 899999998764

>cd04117 Rab15 Rab15 subfamily

Probab=98.76  E-value=3.3e-09  Score=91.19  Aligned_cols=57  Identities=37%  Similarity=0.568  Sum_probs=52.8

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+.+|+.+.|...|.||+|        .++..+.+.+++..+.++|||++
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~D~~   57 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIG--------VDFKMKTIEVDGIKVRIQIWDTA   57 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee--------eEEEEEEEEECCEEEEEEEEeCC
Confidence            4899999999999999999999999999999999        77777788889999999999987

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=98.76  E-value=3e-09  Score=94.95  Aligned_cols=57  Identities=28%  Similarity=0.523  Sum_probs=52.5

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeC-CeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRL-NNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~-~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++|+.+.|...|.||+|        .+|..+.+.++ +..+.|+|||++
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~--------~d~~~~~v~~~~~~~~~l~l~Dt~   58 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIG--------VDFALKVIEWDPNTVVRLQLWDIA   58 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee--------EEEEEEEEEECCCCEEEEEEEECC
Confidence            5899999999999999999999999999999999        77776777888 899999999987

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=98.76  E-value=3.7e-09  Score=91.15  Aligned_cols=58  Identities=22%  Similarity=0.387  Sum_probs=53.5

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+++|..+.|...|.+|+|        .+|..+.+.+++..++++|||++
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~Dt~   59 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG--------VEFGTRIIEVNGQKIKLQIWDTA   59 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccc--------eeEEEEEEEECCEEEEEEEEECC
Confidence            37999999999999999999999999999999999        77776777889999999999986

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.76  E-value=3.3e-09  Score=90.92  Aligned_cols=58  Identities=29%  Similarity=0.484  Sum_probs=53.4

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      +|++++|++++|||+|+++++.+.|...|.||+|        .++..+.+.+++..+.++|||++-
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~Dt~G   58 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIG--------IDYGVKKVSVRNKEVRVNFFDLSG   58 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--------eeEEEEEEEECCeEEEEEEEECCc
Confidence            4899999999999999999999999999999999        777777888899999999999863

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01892 Miro2 Miro2 subfamily

Probab=98.75  E-value=3.9e-09  Score=91.64  Aligned_cols=59  Identities=20%  Similarity=0.233  Sum_probs=53.4

Q ss_pred             cceEEEEEccCccccceeeEEeeeCccc-ccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFH-EYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~-~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .-+|++++|++|||||+|++||+.+.|. ..|.||+|        .+|..+.+.++|..+.+.+||++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~--------~~~~~~~~~~~~~~~~l~~~d~~   62 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIK--------PRYAVNTVEVYGQEKYLILREVG   62 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccC--------cceEEEEEEECCeEEEEEEEecC
Confidence            3589999999999999999999999999 89999999        67766778889999999999976

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01865 Rab3 Rab3 subfamily

Probab=98.74  E-value=4.3e-09  Score=90.67  Aligned_cols=57  Identities=32%  Similarity=0.533  Sum_probs=53.0

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|++++..+.|...|.||+|        .+|..+.+.+++..+.++|||++
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~Dt~   58 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVG--------IDFKVKTVFRNDKRVKLQIWDTA   58 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--------eEEEEEEEEECCEEEEEEEEECC
Confidence            7999999999999999999999999999999999        77777778888999999999987

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.74  E-value=9.7e-08  Score=89.50  Aligned_cols=145  Identities=19%  Similarity=0.131  Sum_probs=94.4

Q ss_pred             ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccc----cccchhh---ccCCcEEEEEEEC
Q psy18160         56 RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERY----HTLAPMY---YRNAQAAIIVYDI  123 (373)
Q Consensus        56 GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~----~~l~~~~---~~~ad~iilv~D~  123 (373)
                      |||||++.+...+....     |+-.....  +.++ ..-.|.+-|.||.-+-    .-+-..|   +..+.+++.|+|+
T Consensus       171 GKSTlls~vS~AkPKIadYpFTTL~PnLGv--V~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~  247 (369)
T COG0536         171 GKSTLLSAVSAAKPKIADYPFTTLVPNLGV--VRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDL  247 (369)
T ss_pred             cHHHHHHHHhhcCCcccCCccccccCcccE--EEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEec
Confidence            99999999998765543     44444332  2332 2234778899986432    2234444   4578999999999


Q ss_pred             CCHh---hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH----HHH
Q psy18160        124 TNQD---TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA----YAE  196 (373)
Q Consensus       124 ~~~~---Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~----~~~  196 (373)
                      +..+   ..++...+..++..+.                   ....+.|.+||+||+|+...     .++.+.    +.+
T Consensus       248 s~~~~~dp~~~~~~i~~EL~~Y~-------------------~~L~~K~~ivv~NKiD~~~~-----~e~~~~~~~~l~~  303 (369)
T COG0536         248 SPIDGRDPIEDYQTIRNELEKYS-------------------PKLAEKPRIVVLNKIDLPLD-----EEELEELKKALAE  303 (369)
T ss_pred             CcccCCCHHHHHHHHHHHHHHhh-------------------HHhccCceEEEEeccCCCcC-----HHHHHHHHHHHHH
Confidence            8654   3555555556665531                   23357899999999996543     233333    333


Q ss_pred             HcCCeEEE-EcCCCCCCHHHHHHHHHHHcchh
Q psy18160        197 ENGLLFME-TSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       197 ~~~~~~~e-vSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      ..+...+. +||.+++|++++...+.+.+.+.
T Consensus       304 ~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         304 ALGWEVFYLISALTREGLDELLRALAELLEET  335 (369)
T ss_pred             hcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence            44443222 99999999999999988877654

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.74  E-value=3.5e-09  Score=90.65  Aligned_cols=56  Identities=32%  Similarity=0.412  Sum_probs=53.0

Q ss_pred             EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      |++++|+.++|||+|+.+|..+.|.+.|.||+|        .++..+.+.+++.++.|+|||++
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~D~~   56 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIG--------IDSYSKEVSIDGKPVNLEIWDTS   56 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSS--------EEEEEEEEEETTEEEEEEEEEET
T ss_pred             CEEEECCCCCCHHHHHHHHHhhccccccccccc--------ccccccccccccccccccccccc
Confidence            789999999999999999999999999999999        78888889999999999999975

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=98.73  E-value=3.9e-09  Score=94.40  Aligned_cols=57  Identities=25%  Similarity=0.274  Sum_probs=49.4

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeee-----CCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNR-----LNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v-----~~~~~~l~iw~~~  362 (373)
                      +|++++|+++||||||+++|+.+.|.+.|.||+|        .++..+.+.+     +++.+.|+|||++
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig--------~~~~~k~~~~~~~~~~~~~~~l~IwDta   62 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVG--------CSVDVKHHTYKEGTPEEKTFFVELWDVG   62 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCccee--------eeEEEEEEEEcCCCCCCcEEEEEEEecC
Confidence            4899999999999999999999999999999999        5555455554     3689999999987

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=98.73  E-value=5.1e-09  Score=90.40  Aligned_cols=59  Identities=36%  Similarity=0.517  Sum_probs=53.6

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++|..+.|...|.||+|        .+|..+.+.+++..+.++|||++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~--------~~~~~~~~~~~~~~~~l~l~D~~   60 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIG--------IDFKIRTIELDGKKIKLQIWDTA   60 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCcc--------ceEEEEEEEECCEEEEEEEEeCC
Confidence            358999999999999999999999999999999999        67766677788999999999986

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=98.72  E-value=7.1e-09  Score=93.99  Aligned_cols=60  Identities=23%  Similarity=0.332  Sum_probs=53.8

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|++|||||+|+.+|+.+.|...|.||+|        .++....+.+++..++++|||++
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig--------~~~~~~~~~~~~~~~~l~i~Dt~   70 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG--------VEVHPLDFFTNCGKIRFYCWDTA   70 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccc--------eeEEEEEEEECCeEEEEEEEECC
Confidence            4569999999999999999999999999999999999        66665666678889999999987

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=98.72  E-value=1.3e-07  Score=84.14  Aligned_cols=153  Identities=10%  Similarity=0.082  Sum_probs=90.6

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc--------cc---
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT--------LA---  107 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~--------l~---  107 (373)
                      +++++|.   |||||+|.+++.+....       |....  .....+++.  .+.++||||......        +.   
T Consensus         2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~--~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~~   77 (196)
T cd01852           2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQ--KESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRCL   77 (196)
T ss_pred             EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccc--eeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHHH
Confidence            5788887   99999999998764432       22222  223344553  578999999654321        11   


Q ss_pred             hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc-
Q psy18160        108 PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV-  186 (373)
Q Consensus       108 ~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v-  186 (373)
                      .....++|++++|.|+.+ .+-++ ...++.+.+...                   ...-.++++|.|+.|........ 
T Consensus        78 ~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg-------------------~~~~~~~ivv~T~~d~l~~~~~~~  136 (196)
T cd01852          78 SLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFG-------------------EKVLDHTIVLFTRGDDLEGGTLED  136 (196)
T ss_pred             HhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhC-------------------hHhHhcEEEEEECccccCCCcHHH
Confidence            112457899999999976 32222 122333333100                   00124788999999965431100 


Q ss_pred             ----CHHHHHHHHHHcCCeEEEEc-----CCCCCCHHHHHHHHHHHcch
Q psy18160        187 ----EYSEGEAYAEENGLLFMETS-----AKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       187 ----~~~e~~~~~~~~~~~~~evS-----ak~~~gI~~lf~~L~~~i~~  226 (373)
                          .....+.+.+..+-.|+..+     +..+.++++|++.+.+.+..
T Consensus       137 ~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         137 YLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             HHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence                11344555666666665555     44567899999888877764

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=98.71  E-value=5.5e-09  Score=91.00  Aligned_cols=56  Identities=27%  Similarity=0.514  Sum_probs=51.3

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|+++||||+|+.+|..+.|...|.||+|        .+|. +.+.++|.++.++|||++
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~   58 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIE--------DAYK-QQARIDNEPALLDILDTA   58 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCccc--------ceEE-EEEEECCEEEEEEEEeCC
Confidence            7999999999999999999999999999999999        5664 667889999999999986

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.71  E-value=2e-07  Score=87.48  Aligned_cols=142  Identities=20%  Similarity=0.153  Sum_probs=89.3

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc----------------------------------ceeeeEEEEEEEECCE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY----------------------------------LFSAAFITQTVCLDDV   88 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~----------------------------------Tig~~~~~~~i~~~~~   88 (373)
                      ...+.+..|.   |||||+-|++.+.-...                                  ..|.+.......+.-.
T Consensus         5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~   84 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE   84 (431)
T ss_pred             cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence            4467777786   99999999986421110                                  1111111111122234


Q ss_pred             EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHH--HHHHHHHhhCCCCCCcccccchhHHhhhhcCCC
Q psy18160         89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK--SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP  166 (373)
Q Consensus        89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (373)
                      +-+|.+-||||+|.|..-.-.-...||++|+++|+...- .+.-.  .++..+.                         .
T Consensus        85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLL-------------------------G  138 (431)
T COG2895          85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLL-------------------------G  138 (431)
T ss_pred             cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHh-------------------------C
Confidence            456889999999999765555577899999999984321 11111  1222221                         2


Q ss_pred             CCeEEEEEeCCCCCCCCcccCH----HHHHHHHHHcCC---eEEEEcCCCCCCHH
Q psy18160        167 NIVIALAGNKADLPTSRRCVEY----SEGEAYAEENGL---LFMETSAKTAMNVN  214 (373)
Q Consensus       167 ~~piilVgnK~Dl~~~~~~v~~----~e~~~~~~~~~~---~~~evSak~~~gI~  214 (373)
                      -..++|..||+||.+- .+...    ++...|+.++++   .++++||..|+||-
T Consensus       139 IrhvvvAVNKmDLvdy-~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         139 IRHVVVAVNKMDLVDY-SEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             CcEEEEEEeeeccccc-CHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            3468999999999764 22222    334568888875   59999999999985

>PLN00023 GTP-binding protein; Provisional

Probab=98.70  E-value=6.6e-09  Score=98.28  Aligned_cols=60  Identities=27%  Similarity=0.298  Sum_probs=50.8

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeC-------------CeEEEEEehhh
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRL-------------NNNVPITFVWV  361 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~-------------~~~~~l~iw~~  361 (373)
                      ...+|++++|+.+||||+|+.+|+.+.|...|.||||        .+|..+.+.++             ++.+.++|||+
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG--------~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDT   90 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIG--------CTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDV   90 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCcee--------eeEEEEEEEECCcccccccccccCCceEEEEEEEC
Confidence            3468999999999999999999999999999999999        55544555543             46899999999


Q ss_pred             H
Q psy18160        362 I  362 (373)
Q Consensus       362 ~  362 (373)
                      |
T Consensus        91 A   91 (334)
T PLN00023         91 S   91 (334)
T ss_pred             C
Confidence            7

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.69  E-value=8e-08  Score=87.67  Aligned_cols=158  Identities=9%  Similarity=0.101  Sum_probs=101.6

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEE-EEECCEEEEEEEEeCCCccc-------ccccchh
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQT-VCLDDVTIRFEIWDTAGQER-------YHTLAPM  109 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~-i~~~~~~v~l~i~Dt~G~e~-------~~~l~~~  109 (373)
                      .+..+.+++.|.   |||||+|+++.++..+.   ..|.+..... ..+++  -.+.|||++|-++       |+.+...
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence            344577778886   99999999997766655   2232221111 22344  3488999999765       6667777


Q ss_pred             hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC------
Q psy18160        110 YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR------  183 (373)
Q Consensus       110 ~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~------  183 (373)
                      ++...|.++.+.+..|+.=--+. +++..+..                      ..-+.+++++.|.+|....-      
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~----------------------~~~~~~~i~~VtQ~D~a~p~~~W~~~  170 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVII----------------------LGLDKRVLFVVTQADRAEPGREWDSA  170 (296)
T ss_pred             HhhhccEEEEeccCCCccccCCH-HHHHHHHH----------------------hccCceeEEEEehhhhhccccccccc
Confidence            88899999999999887622222 23333332                      12347999999999975431      


Q ss_pred             cccCHHHHHHHH--------HHc--CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        184 RCVEYSEGEAYA--------EEN--GLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       184 ~~v~~~e~~~~~--------~~~--~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ...+...++++.        +..  --|++.+|...+.|++++...++..++.
T Consensus       171 ~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         171 GHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence            001111111111        111  1368888899999999999999998873

>cd04110 Rab35 Rab35 subfamily

Probab=98.69  E-value=8e-09  Score=92.16  Aligned_cols=59  Identities=34%  Similarity=0.513  Sum_probs=54.0

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++|+|||+|+++|..+.|...|.||+|        .++....+.++|..+.++|||++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~l~D~~   63 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG--------VDFKIRTVEINGERVKLQIWDTA   63 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCcccc--------ceeEEEEEEECCEEEEEEEEeCC
Confidence            458999999999999999999999999999999999        77776777888999999999987

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01871 Rac1_like Rac1-like subfamily

Probab=98.69  E-value=8e-09  Score=90.14  Aligned_cols=56  Identities=20%  Similarity=0.221  Sum_probs=50.5

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|+++||||+|+.||+.+.|...|.||++        ..| .+.+.+++..+.|+|||++
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~--------~~~-~~~~~~~~~~~~l~i~Dt~   57 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--------DNY-SANVMVDGKPVNLGLWDTA   57 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce--------eee-EEEEEECCEEEEEEEEECC
Confidence            6899999999999999999999999999999998        444 3567789999999999987

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04109 Rab28 Rab28 subfamily

Probab=98.68  E-value=7.5e-09  Score=93.51  Aligned_cols=57  Identities=33%  Similarity=0.466  Sum_probs=51.8

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCC-eEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLN-NNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~-~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++|..+.|...|.||+|        .|+..+.+.+++ ..+.++|||++
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~--------~d~~~~~i~~~~~~~~~~~i~Dt~   58 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIG--------LDFFSKRVTLPGNLNVTLQVWDIG   58 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee--------EEEEEEEEEeCCCCEEEEEEEECC
Confidence            5899999999999999999999999999999999        787777788865 68999999986

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04136 Rap_like Rap-like subfamily

Probab=98.68  E-value=7e-09  Score=88.69  Aligned_cols=56  Identities=32%  Similarity=0.457  Sum_probs=50.5

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++++.+.|...|.||++        ..+ .+.+.+++..+.++|||++
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~l~i~Dt~   57 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE--------DSY-RKQIEVDGQQCMLEILDTA   57 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh--------hhE-EEEEEECCEEEEEEEEECC
Confidence            7999999999999999999999999999999998        334 3677889999999999996

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04116 Rab9 Rab9 subfamily

Probab=98.66  E-value=1.1e-08  Score=88.31  Aligned_cols=59  Identities=31%  Similarity=0.387  Sum_probs=54.1

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++|+.+.|...+.+|+|        .++..+.+.+++..+.++|||++
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~D~~   62 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG--------VEFLNKDLEVDGHFVTLQIWDTA   62 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCcee--------eEEEEEEEEECCeEEEEEEEeCC
Confidence            458999999999999999999999999999999999        77766778889999999999987

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.66  E-value=9.6e-09  Score=87.47  Aligned_cols=56  Identities=25%  Similarity=0.386  Sum_probs=50.8

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++|+.+.|...|.||++        ..| .+.+.+++..+.++|||++
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~~~i~Dt~   57 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE--------DSY-RKQVVIDGETCLLDILDTA   57 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcch--------heE-EEEEEECCEEEEEEEEECC
Confidence            6899999999999999999999999999999998        555 3677889999999999986

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04118 Rab24 Rab24 subfamily

Probab=98.66  E-value=9.2e-09  Score=90.99  Aligned_cols=57  Identities=32%  Similarity=0.376  Sum_probs=51.9

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccc-cccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHE-YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~-~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++|+.+.|.. .|.+|+|        .+|..+.+.++|..+.|+|||++
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~D~~   58 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIG--------AAFVAKRMVVGERVVTLGIWDTA   58 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCccccee--------eEEEEEEEEECCEEEEEEEEECC
Confidence            489999999999999999999999985 7999999        77766778899999999999987

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04142 RRP22 RRP22 subfamily

Probab=98.65  E-value=8.6e-09  Score=91.98  Aligned_cols=57  Identities=21%  Similarity=0.245  Sum_probs=50.9

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|+++||||+|+++|+.+.|...|.||++        .++..+.+.++|+.+.++|||++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~--------~~~~~~~i~~~~~~~~l~i~Dt~   57 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEH--------RRLYRPAVVLSGRVYDLHILDVP   57 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccc--------cccceeEEEECCEEEEEEEEeCC
Confidence            4899999999999999999999999999999999        56555667789999999999974

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.65  E-value=2.6e-07  Score=98.08  Aligned_cols=111  Identities=14%  Similarity=0.066  Sum_probs=72.3

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcC------------cCc---------ceeeeEEEEEEEECCEEEEEEEEeCCCcc
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVF------------YPY---------LFSAAFITQTVCLDDVTIRFEIWDTAGQE  101 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~------------~~~---------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e  101 (373)
                      ....++++|.   |||||+.+++...-            .+.         |+..........++++.+.+.++||||+.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            3445777775   99999999975310            000         22222111222335556789999999999


Q ss_pred             cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160        102 RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT  181 (373)
Q Consensus       102 ~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  181 (373)
                      +|.......++.+|++++|+|.......+...-| ..+..                        .+.|++++.||+|+..
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~------------------------~~~~~iv~iNK~D~~~  153 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALR------------------------ERVKPVLFINKVDRLI  153 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHH------------------------cCCCeEEEEECchhhc
Confidence            9888788889999999999998765332222222 22222                        2457799999999753

>cd01864 Rab19 Rab19 subfamily

Probab=98.65  E-value=1.3e-08  Score=87.57  Aligned_cols=60  Identities=35%  Similarity=0.540  Sum_probs=54.6

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      ..+|++++|++++|||+|++++..+.|...|.+|+|        .++..+.+.+++..+.++|||++-
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~D~~G   61 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIG--------VDFTMKTLEIEGKRVKLQIWDTAG   61 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccc--------eEEEEEEEEECCEEEEEEEEECCC
Confidence            458999999999999999999999999999999999        777777888899999999999873

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=3.5e-07  Score=87.89  Aligned_cols=150  Identities=15%  Similarity=0.113  Sum_probs=94.0

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhC--cCcCc------------------------------ceeeeEEEEEEEECCE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINV--VFYPY------------------------------LFSAAFITQTVCLDDV   88 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~--~~~~~------------------------------Tig~~~~~~~i~~~~~   88 (373)
                      ...++.++++|.   |||||+-|++-.  .++..                              -.|.++......+.-+
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            446789999997   999999998743  11110                              2334444444455556


Q ss_pred             EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHh---hHHHH--HHHHHHHHhhCCCCCCcccccchhHHhhhhc
Q psy18160         89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD---TFGRA--KSWVKELQRMAPPNIDTFGRAKSWVKELQRM  163 (373)
Q Consensus        89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~---Sf~~i--~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      .+.+.|.|++|+..|-.-.-.-...||++|||+|+.+.+   .|..-  .+-...+.+                      
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~----------------------  141 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLAR----------------------  141 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHH----------------------
Confidence            678999999998766544444467899999999998763   11110  011111111                      


Q ss_pred             CCCCCeEEEEEeCCCCCCCCcccCHHHH----HHHHHHcC-----CeEEEEcCCCCCCHHHH
Q psy18160        164 APPNIVIALAGNKADLPTSRRCVEYSEG----EAYAEENG-----LLFMETSAKTAMNVNEI  216 (373)
Q Consensus       164 ~~~~~piilVgnK~Dl~~~~~~v~~~e~----~~~~~~~~-----~~~~evSak~~~gI~~l  216 (373)
                      ...--.+|++.||+|+.+- ++...++.    ..+.+..|     ++|+++|+..|.|+.+.
T Consensus       142 tlGi~~lIVavNKMD~v~w-de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         142 TLGIKQLIVAVNKMDLVSW-DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             hcCCceEEEEEEccccccc-CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            1123358999999999752 33333333    33445555     46999999999998653

>cd04125 RabA_like RabA-like subfamily

Probab=98.65  E-value=1.1e-08  Score=90.11  Aligned_cols=58  Identities=34%  Similarity=0.507  Sum_probs=52.8

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      +|++++|++++|||+|+++|..+.|...|.||+|        .++..+.+.+++..+.++|||++-
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~g   58 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIG--------VDFKIKTVYIENKIIKLQIWDTNG   58 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--------eEEEEEEEEECCEEEEEEEEECCC
Confidence            5899999999999999999999999988999999        777767788899999999999873

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd00066 G-alpha G protein alpha subunit

Probab=98.64  E-value=3.9e-07  Score=87.22  Aligned_cols=131  Identities=15%  Similarity=0.202  Sum_probs=89.0

Q ss_pred             ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCH----------hhHHHHHHHHHHHHhh
Q psy18160         73 LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ----------DTFGRAKSWVKELQRM  142 (373)
Q Consensus        73 Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~----------~Sf~~i~~~l~~i~~~  142 (373)
                      |.|..  ...+.++  .+.+.+||++|+...+..|..++.+++++++|+|+++.          ..+.+....+..+.. 
T Consensus       148 T~Gi~--~~~f~~~--~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~-  222 (317)
T cd00066         148 TTGIV--ETKFTIK--NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN-  222 (317)
T ss_pred             cCCee--EEEEEec--ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh-
Confidence            55543  2334443  57799999999999999999999999999999999874          334444444444433 


Q ss_pred             CCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC--------------c-ccCHHHHHHHHHH----------
Q psy18160        143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR--------------R-CVEYSEGEAYAEE----------  197 (373)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~--------------~-~v~~~e~~~~~~~----------  197 (373)
                                         ...-.+.|++|++||.|+..+.              . .-+.+++..+...          
T Consensus       223 -------------------~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~  283 (317)
T cd00066         223 -------------------SRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPN  283 (317)
T ss_pred             -------------------CccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCC
Confidence                               1223678999999999964320              0 2234455444322          


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      ..+-...++|.+..++..+|+.+...+...
T Consensus       284 ~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         284 KEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             CeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            123356789999999999999888877654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>cd04111 Rab39 Rab39 subfamily

Probab=98.64  E-value=1.3e-08  Score=91.70  Aligned_cols=58  Identities=31%  Similarity=0.550  Sum_probs=52.2

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeee-CCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNR-LNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v-~~~~~~l~iw~~~  362 (373)
                      .+|++++|+++||||+|+++|..+.|...+.||+|        .+|..+.+.+ ++..+.|+|||++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~--------~d~~~~~i~~~~~~~~~l~i~Dt~   60 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVG--------VDFFSRLIEIEPGVRIKLQLWDTA   60 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceec--------eEEEEEEEEECCCCEEEEEEEeCC
Confidence            58999999999999999999999999999999999        7777677766 5789999999986

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.64  E-value=1.4e-08  Score=87.28  Aligned_cols=57  Identities=35%  Similarity=0.550  Sum_probs=53.0

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|++++..+.|...|.||+|        .+|..+.+.+++..++++|||++
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~D~~   59 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG--------VDFKIRTIELDGKTIKLQIWDTA   59 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--------eeEEEEEEEECCEEEEEEEEECC
Confidence            7999999999999999999999999999999999        77777778889999999999987

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PTZ00369 Ras-like protein; Provisional

Probab=98.64  E-value=1.3e-08  Score=89.94  Aligned_cols=57  Identities=26%  Similarity=0.418  Sum_probs=52.1

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+++|..+.|...|.||+|        .+|. +.+.+++..+.++|||++
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~   61 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIE--------DSYR-KQCVIDEETCLLDILDTA   61 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchh--------hEEE-EEEEECCEEEEEEEEeCC
Confidence            48999999999999999999999999999999999        5664 677889999999999986

>cd04175 Rap1 Rap1 subgroup

Probab=98.63  E-value=1.2e-08  Score=87.54  Aligned_cols=56  Identities=34%  Similarity=0.481  Sum_probs=50.8

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++|+.+.|...|.||++        ..+. +.+.+++..+.|+|||++
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~   57 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE--------DSYR-KQVEVDGQQCMLEILDTA   57 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcch--------heEE-EEEEECCEEEEEEEEECC
Confidence            7999999999999999999999999999999999        5554 677789999999999987

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04176 Rap2 Rap2 subgroup

Probab=98.63  E-value=1.2e-08  Score=87.43  Aligned_cols=56  Identities=32%  Similarity=0.461  Sum_probs=50.6

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++|+.+.|...|.||++         ++..+.+.++|..+.++|||++
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~---------~~~~~~~~~~~~~~~l~i~Dt~   57 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE---------DFYRKEIEVDSSPSVLEILDTA   57 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh---------heEEEEEEECCEEEEEEEEECC
Confidence            7999999999999999999999999999999997         3444778889999999999986

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>PLN03108 Rab family protein; Provisional

Probab=98.62  E-value=1.7e-08  Score=90.91  Aligned_cols=59  Identities=25%  Similarity=0.473  Sum_probs=54.3

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++++.+.|...|.||+|        .+|..+.+.+++..+.++|||++
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~--------~~~~~~~i~~~~~~i~l~l~Dt~   63 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--------VEFGARMITIDNKPIKLQIWDTA   63 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc--------ceEEEEEEEECCEEEEEEEEeCC
Confidence            458999999999999999999999999999999999        77777778889999999999987

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.61  E-value=1.1e-06  Score=87.83  Aligned_cols=179  Identities=15%  Similarity=0.154  Sum_probs=113.5

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCcceeeeEEEEEEEEC--CEEEEEEEEeCCCcccccccchhhccC----CcEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPYLFSAAFITQTVCLD--DVTIRFEIWDTAGQERYHTLAPMYYRN----AQAAI  118 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~Tig~~~~~~~i~~~--~~~v~l~i~Dt~G~e~~~~l~~~~~~~----ad~ii  118 (373)
                      ..++|+|+   |||||+.+|.+.+-...+.|.+|..-.+.-+  +...++.+|-..|...+..+.+..+..    --.+|
T Consensus        26 k~vlvlG~~~~GKttli~~L~~~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vv  105 (472)
T PF05783_consen   26 KSVLVLGDKGSGKTTLIARLQGIEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVV  105 (472)
T ss_pred             ceEEEEeCCCCchHHHHHHhhccCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEE
Confidence            47889998   9999999997655333377777765554432  245678999998876677766655542    35889


Q ss_pred             EEEECCCHhhH-HHHHHHHHHHHhhCCCC-C-----------------------C----cccccchhHH----------h
Q psy18160        119 IVYDITNQDTF-GRAKSWVKELQRMAPPN-I-----------------------D----TFGRAKSWVK----------E  159 (373)
Q Consensus       119 lv~D~~~~~Sf-~~i~~~l~~i~~~~~~~-~-----------------------~----~~~~~~~~~~----------~  159 (373)
                      +|.|++.|-.+ +.+.+|+..++++...- .                       +    ...+......          .
T Consensus       106 IvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lp  185 (472)
T PF05783_consen  106 IVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLP  185 (472)
T ss_pred             EEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccCC
Confidence            99999998755 45667776655432110 0                       0    0000000000          0


Q ss_pred             hhh---cCCCCCeEEEEEeCCCCCCCC-cc-----cCH----HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        160 LQR---MAPPNIVIALAGNKADLPTSR-RC-----VEY----SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       160 ~~~---~~~~~~piilVgnK~Dl~~~~-~~-----v~~----~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      +..   ...-++|++||.+|+|..... +.     ...    .-.+.+|-.+|...|.+|++...|++-|+..|...+..
T Consensus       186 l~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~  265 (472)
T PF05783_consen  186 LGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYG  265 (472)
T ss_pred             CCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhcc
Confidence            000   001148999999999974310 11     111    12456777889999999999999999999998887754

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>cd04134 Rho3 Rho3 subfamily

Probab=98.61  E-value=1.7e-08  Score=89.28  Aligned_cols=55  Identities=27%  Similarity=0.337  Sum_probs=50.2

Q ss_pred             EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      |++++|++++|||+|+.+|..+.|...|.||++        .+|. +.+.+++..+.|+|||++
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~--------~~~~-~~i~~~~~~~~l~i~Dt~   56 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVF--------ENYV-HDIFVDGLHIELSLWDTA   56 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcce--------eeeE-EEEEECCEEEEEEEEECC
Confidence            789999999999999999999999999999999        5554 667789999999999987

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>smart00275 G_alpha G protein alpha subunit

Probab=98.61  E-value=5.5e-07  Score=87.02  Aligned_cols=143  Identities=15%  Similarity=0.195  Sum_probs=95.8

Q ss_pred             HHHhhhCcCcCc----------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCH----
Q psy18160         61 TQIVINVVFYPY----------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ----  126 (373)
Q Consensus        61 l~rl~~~~~~~~----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~----  126 (373)
                      +.|+....|.+.          |.|..  ...+.+++  +.+.+||.+|+...+..|..++.++++++||+|+++-    
T Consensus       149 ~~ri~~~~y~Pt~~Dil~~r~~T~Gi~--~~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~  224 (342)
T smart00275      149 IDRIGDPDYVPTEQDILRSRVPTTGIQ--ETAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVL  224 (342)
T ss_pred             HHHHhCCCCCCCHHHhhheeCCccceE--EEEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccch
Confidence            345555566554          66654  33455554  5688999999999999999999999999999999973    


Q ss_pred             ------hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC--------------ccc
Q psy18160        127 ------DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR--------------RCV  186 (373)
Q Consensus       127 ------~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~--------------~~v  186 (373)
                            ..+.+....+..+..                    ...-.+.|++|++||.|+....              ...
T Consensus       225 ~Ed~~~nrl~esl~~f~~l~~--------------------~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~  284 (342)
T smart00275      225 EEDESTNRMQESLNLFESICN--------------------SRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPN  284 (342)
T ss_pred             hccCcchHHHHHHHHHHHHHc--------------------CccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCC
Confidence                  234444444444433                    1233679999999999974320              112


Q ss_pred             CHHHHHHHHHH-----c------CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        187 EYSEGEAYAEE-----N------GLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       187 ~~~e~~~~~~~-----~------~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +.+++.++...     .      .+-.+.++|.+-.++..+|+.+...+.++
T Consensus       285 ~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~  336 (342)
T smart00275      285 DYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR  336 (342)
T ss_pred             CHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence            33444443321     1      13356788999999999999888777654

Subunit of G proteins that contains the guanine nucleotide binding site

>cd01873 RhoBTB RhoBTB subfamily

Probab=98.61  E-value=1.8e-08  Score=89.75  Aligned_cols=65  Identities=18%  Similarity=0.147  Sum_probs=48.3

Q ss_pred             ceEEEEEccCccccceeeE-Eeee-----CcccccccCCccc-cccccceeeeeccee-eeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVL-RFVR-----GQFHEYQESTIGG-ECQSSHSISFSMPTK-NRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~-~~~~-----~~f~~~~~~Tig~-~~~~~~~~~~~~~~~-~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|+++||||+|+. ++..     +.|...|.||+|. ++.... .+|..+.. .++|+++.|+|||+|
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~-~~~~~~~~~~~~~~~v~l~iwDTa   74 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVC-QEVLERSRDVVDGVSVSLRLWDTF   74 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEE-eeeccccceeeCCEEEEEEEEeCC
Confidence            3799999999999999996 5543     4567889999983 332222 34443433 689999999999997

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04127 Rab27A Rab27a subfamily

Probab=98.61  E-value=2e-08  Score=87.63  Aligned_cols=66  Identities=17%  Similarity=0.307  Sum_probs=50.1

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeeccee---eeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTK---NRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~---~v~~~~~~l~iw~~~  362 (373)
                      +.+|++++|+++||||+|+++|..+.|...|.||+|.+|..+. +.+..+..   ..++..+.++|||++
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~   71 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKR-VVYNSSGPGGTLGRGQRIHLQLWDTA   71 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEE-EEEcCccccccccCCCEEEEEEEeCC
Confidence            4589999999999999999999999999999999995554433 22221000   112678999999997

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04143 Rhes_like Rhes_like subfamily

Probab=98.61  E-value=1.2e-08  Score=94.13  Aligned_cols=56  Identities=30%  Similarity=0.473  Sum_probs=50.6

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++|+.+.|...|.||++         ++..+.+.++|..+.|+|||++
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~---------d~~~k~~~i~~~~~~l~I~Dt~   56 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE---------DFHRKLYSIRGEVYQLDILDTS   56 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh---------HhEEEEEEECCEEEEEEEEECC
Confidence            4899999999999999999999999999999997         4545677789999999999997

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=98.59  E-value=2.1e-08  Score=86.83  Aligned_cols=58  Identities=31%  Similarity=0.547  Sum_probs=53.2

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+++|+.+.|...+.+|+|        .+|..+.+.+++..+.++|||++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~   59 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIG--------VDFRERTVEIDGERIKVQLWDTA   59 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCcccccee--------EEEEEEEEEECCeEEEEEEEeCC
Confidence            37999999999999999999999999999999999        77777778889999999999975

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01868 Rab11_like Rab11-like

Probab=98.59  E-value=2.6e-08  Score=85.56  Aligned_cols=58  Identities=33%  Similarity=0.512  Sum_probs=53.6

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|++++..+.|...+.||+|        .+|..+.+.+++..+.++|||++
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~D~~   60 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIG--------VEFATRSIQIDGKTIKAQIWDTA   60 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--------eEEEEEEEEECCEEEEEEEEeCC
Confidence            47999999999999999999999999999999999        77877788889999999999987

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04103 Centaurin_gamma Centaurin gamma

Probab=98.59  E-value=1.9e-08  Score=86.42  Aligned_cols=56  Identities=21%  Similarity=0.223  Sum_probs=48.5

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      +|++++|++|+|||+|+.+|+.+.|...|.|+.+         +|. +.+.++|+.+.|+|||++.
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~---------~~~-~~i~~~~~~~~l~i~D~~g   56 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG---------RFK-KEVLVDGQSHLLLIRDEGG   56 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc---------ceE-EEEEECCEEEEEEEEECCC
Confidence            4889999999999999999999999988876643         554 7788999999999999873

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.57  E-value=2.4e-08  Score=85.31  Aligned_cols=57  Identities=30%  Similarity=0.472  Sum_probs=51.1

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeC--CeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRL--NNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~--~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|++++..+.|...|.||+|        .++..+.+.++  +..+.++|||++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~i~D~~   59 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIG--------VDFLEKQIFLRQSDEDVRLMLWDTA   59 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEE--------EEEEEEEEEEcCCCCEEEEEEeeCC
Confidence            4899999999999999999999999999999999        67665667777  889999999986

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>KOG0395|consensus

Probab=98.57  E-value=7.2e-08  Score=85.76  Aligned_cols=58  Identities=29%  Similarity=0.414  Sum_probs=53.6

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      .+|++++|.+|||||+|+.||+++.|.+.|.|||+        ..| .+.+.|+|..+.|.|+|.+.
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie--------d~y-~k~~~v~~~~~~l~ilDt~g   60 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE--------DSY-RKELTVDGEVCMLEILDTAG   60 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCcc--------ccc-eEEEEECCEEEEEEEEcCCC
Confidence            47999999999999999999999999999999998        444 59999999999999999986

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.56  E-value=3.2e-08  Score=89.30  Aligned_cols=60  Identities=22%  Similarity=0.351  Sum_probs=53.8

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|++|+|||||+++++.+.|...|.||+|        .++....+..++..+.+++||++
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~i~i~~~Dt~   66 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLG--------VEVHPLKFYTNCGPICFNVWDTA   66 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--------eEEEEEEEEECCeEEEEEEEECC
Confidence            3458999999999999999999999999999999999        67766667778999999999986

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.56  E-value=2.7e-08  Score=85.99  Aligned_cols=57  Identities=23%  Similarity=0.399  Sum_probs=51.1

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++++.+.|...|.||+|        .++....+..++..+.+.+||++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~Dt~   57 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--------VEVHPLDFHTNRGKIRFNVWDTA   57 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee--------eEEEEEEEEECCEEEEEEEEECC
Confidence            5899999999999999999999999999999999        66665566678899999999997

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04124 RabL2 RabL2 subfamily

Probab=98.55  E-value=2.9e-08  Score=85.28  Aligned_cols=57  Identities=32%  Similarity=0.407  Sum_probs=51.4

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||||+++++.+.|...+.+|++        .++..+.+.+++..+.++|||++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~Dt~   57 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYA--------LTLYKHNAKFEGKTILVDFWDTA   57 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcee--------eEEEEEEEEECCEEEEEEEEeCC
Confidence            5899999999999999999999999999999998        66665677789999999999986

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04144 Ras2 Ras2 subfamily

Probab=98.55  E-value=2.1e-08  Score=88.75  Aligned_cols=55  Identities=25%  Similarity=0.335  Sum_probs=49.3

Q ss_pred             EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      |++++|++++|||||+++|+.+.|...|.||+|        .++. +.+.++|..+.|+|||++
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~   55 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIE--------DSYR-KQVVVDGQPCMLEVLDTA   55 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchH--------hhEE-EEEEECCEEEEEEEEECC
Confidence            579999999999999999999999999999999        5553 567789999999999997

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>TIGR00101 ureG urease accessory protein UreG

Probab=98.54  E-value=1.8e-06  Score=77.04  Aligned_cols=54  Identities=22%  Similarity=0.111  Sum_probs=39.6

Q ss_pred             EEEEeCCCCCCCCcccCHHHHHHHHHH--cCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        171 ALAGNKADLPTSRRCVEYSEGEAYAEE--NGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       171 ilVgnK~Dl~~~~~~v~~~e~~~~~~~--~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++++||+|+.+. .....+...+.++.  .+.+++++||++|+|++++|++|.+...
T Consensus       141 ~~~~~k~d~~~~-~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       141 LLVINKIDLAPM-VGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             EEEEEhhhcccc-ccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            889999999742 11223334444444  3578999999999999999999987654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd01866 Rab2 Rab2 subfamily

Probab=98.53  E-value=4.3e-08  Score=84.71  Aligned_cols=60  Identities=23%  Similarity=0.435  Sum_probs=54.2

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      ..+|++++|++++|||+|++++..+.|...+.+|+|        .++....+.+++..+.+.|||++-
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~G   62 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--------VEFGARMITIDGKQIKLQIWDTAG   62 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--------eeEEEEEEEECCEEEEEEEEECCC
Confidence            348999999999999999999999999999999999        778777788899999999999753

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.53  E-value=4.4e-08  Score=83.76  Aligned_cols=58  Identities=53%  Similarity=0.693  Sum_probs=53.4

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|++++..+.|...+.+|+|        .+|..+.+.+++..+++.|||.+
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~v~~~~~~~~~~i~D~~   58 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIG--------AAFLTQTVNLDDTTVKFEIWDTA   58 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--------eeEEEEEEEECCEEEEEEEEeCC
Confidence            37999999999999999999999999998999999        77777888899999999999986

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>KOG3905|consensus

Probab=98.51  E-value=1.4e-06  Score=80.91  Aligned_cols=177  Identities=15%  Similarity=0.161  Sum_probs=108.9

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCcceeeeEEEEEEEE--CCEEEEEEEEeCCCcccccccchhhccCC----cEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPYLFSAAFITQTVCL--DDVTIRFEIWDTAGQERYHTLAPMYYRNA----QAAII  119 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~Tig~~~~~~~i~~--~~~~v~l~i~Dt~G~e~~~~l~~~~~~~a----d~iil  119 (373)
                      .++++|+   |||||+.++-+.+......|..|..-.+.-  .+...++.+|-.-|.--+..+....+...    ..+||
T Consensus        54 ~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlvil  133 (473)
T KOG3905|consen   54 NVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVIL  133 (473)
T ss_pred             eEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEEE
Confidence            6888997   999999999988733335555555444432  23455677887777655555554444322    47889


Q ss_pred             EEECCCHh-hHHHHHHHHHHHHhhCCC-CC-------CcccccchhHHhh-----------hh-----------------
Q psy18160        120 VYDITNQD-TFGRAKSWVKELQRMAPP-NI-------DTFGRAKSWVKEL-----------QR-----------------  162 (373)
Q Consensus       120 v~D~~~~~-Sf~~i~~~l~~i~~~~~~-~~-------~~~~~~~~~~~~~-----------~~-----------------  162 (373)
                      +.|++++- -++.+.+|...+.++... .+       -.+...+.|-.=+           ++                 
T Consensus       134 tasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~  213 (473)
T KOG3905|consen  134 TASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLG  213 (473)
T ss_pred             EEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccccC
Confidence            99999994 566677887665442111 01       0000000010000           00                 


Q ss_pred             ----cCCCCCeEEEEEeCCCCCCC------CcccCH----HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        163 ----MAPPNIVIALAGNKADLPTS------RRCVEY----SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       163 ----~~~~~~piilVgnK~Dl~~~------~~~v~~----~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                          ...-++|++||.+|+|....      -|....    ..+++||-.+|...+.+|+|...|++-+...|..++.
T Consensus       214 ~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y  290 (473)
T KOG3905|consen  214 QDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY  290 (473)
T ss_pred             CcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence                01125899999999998321      011111    1246778888999999999999999999999987654

>cd04112 Rab26 Rab26 subfamily

Probab=98.50  E-value=4.5e-08  Score=86.62  Aligned_cols=57  Identities=32%  Similarity=0.475  Sum_probs=50.7

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccc-cccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHE-YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~-~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++|..+.|.. .|.+|++        .+|..+.+.+++..+.++|||++
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~   58 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVG--------IDFRNKVVTVDGVKVKLQIWDTA   58 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCccc--------ceeEEEEEEECCEEEEEEEEeCC
Confidence            589999999999999999999999964 7899999        67765667789999999999987

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.50  E-value=2.4e-06  Score=82.69  Aligned_cols=153  Identities=10%  Similarity=0.114  Sum_probs=98.6

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhC----cCc-----------C--ccee-------eeE-EEEEEEE---CCEEEEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINV----VFY-----------P--YLFS-------AAF-ITQTVCL---DDVTIRFEI   94 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~----~~~-----------~--~Tig-------~~~-~~~~i~~---~~~~v~l~i   94 (373)
                      ..+.+.++|.   |||||+|+|.+.    ...           .  +..|       .-| ..+.+++   ++-...+.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            4588999998   999999999988    444           1  1222       122 0022333   445567889


Q ss_pred             EeCCCcccc--------cc--c-------------------chhhcc-CCcEEEEEE-ECC----CHhhHHHHH-HHHHH
Q psy18160         95 WDTAGQERY--------HT--L-------------------APMYYR-NAQAAIIVY-DIT----NQDTFGRAK-SWVKE  138 (373)
Q Consensus        95 ~Dt~G~e~~--------~~--l-------------------~~~~~~-~ad~iilv~-D~~----~~~Sf~~i~-~~l~~  138 (373)
                      +||+|-..-        ..  +                   .+..+. ++|..|+|. |.+    .++.+...+ +|+.+
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            999984211        11  0                   223355 899999998 764    233444443 67777


Q ss_pred             HHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCC--CCCCHHHH
Q psy18160        139 LQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAK--TAMNVNEI  216 (373)
Q Consensus       139 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak--~~~gI~~l  216 (373)
                      ++.                        .++|.++|.||.|-...   ...+.+.++...++.+++.+|+.  ....|..+
T Consensus       176 Lk~------------------------~~kPfiivlN~~dp~~~---et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~i  228 (492)
T TIGR02836       176 LKE------------------------LNKPFIILLNSTHPYHP---ETEALRQELEEKYDVPVLAMDVESMRESDILSV  228 (492)
T ss_pred             HHh------------------------cCCCEEEEEECcCCCCc---hhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHH
Confidence            766                        58899999999993222   23333456667788888888875  45578888


Q ss_pred             HHHHHHHcc
Q psy18160        217 FVEIAKKLP  225 (373)
Q Consensus       217 f~~L~~~i~  225 (373)
                      ++.++...+
T Consensus       229 l~~vL~EFP  237 (492)
T TIGR02836       229 LEEVLYEFP  237 (492)
T ss_pred             HHHHHhcCC
Confidence            888776554

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PLN03118 Rab family protein; Provisional

Probab=98.50  E-value=7.4e-08  Score=86.68  Aligned_cols=63  Identities=27%  Similarity=0.424  Sum_probs=54.2

Q ss_pred             ccccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       291 ~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .......+|++++|++++|||+|+++|+.+.| ..+.||+|        .++..+.+.+++..+.+.|||++
T Consensus         8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~--------~~~~~~~~~~~~~~~~l~l~Dt~   70 (211)
T PLN03118          8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIG--------VDFKIKQLTVGGKRLKLTIWDTA   70 (211)
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCce--------eEEEEEEEEECCEEEEEEEEECC
Confidence            33445679999999999999999999998887 46889999        77777778889999999999987

>cd04113 Rab4 Rab4 subfamily

Probab=98.50  E-value=5.1e-08  Score=83.35  Aligned_cols=57  Identities=30%  Similarity=0.495  Sum_probs=52.1

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|++++..+.|...+.+|+|        .++....+.+++..+.++|||+.
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~l~D~~   57 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIG--------VEFGSKIIRVGGKRVKLQIWDTA   57 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee--------eeEEEEEEEECCEEEEEEEEECc
Confidence            5899999999999999999999999999999999        77766777888999999999986

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01870 RhoA_like RhoA-like subfamily

Probab=98.49  E-value=5.2e-08  Score=84.51  Aligned_cols=56  Identities=25%  Similarity=0.342  Sum_probs=50.3

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .|++++|++++|||+|+++|..+.|...|.||++        ..+. +.+.+++..+.+.|||++
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~   57 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF--------ENYV-ADIEVDGKQVELALWDTA   57 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--------cceE-EEEEECCEEEEEEEEeCC
Confidence            5899999999999999999999999999999998        5553 566788999999999987

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04132 Rho4_like Rho4-like subfamily

Probab=98.49  E-value=4.7e-08  Score=85.91  Aligned_cols=56  Identities=18%  Similarity=0.316  Sum_probs=49.4

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeC-CeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRL-NNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~-~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++|..+.|...|.||++        .+|. +.+..+ +..+.++|||++
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~--------~~~~-~~i~~~~~~~~~l~i~Dt~   57 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVF--------ENYV-TNIQGPNGKIIELALWDTA   57 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeee--------eeeE-EEEEecCCcEEEEEEEECC
Confidence            4899999999999999999999999999999999        6664 556665 889999999986

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG4252|consensus

Probab=98.49  E-value=3.5e-09  Score=89.90  Aligned_cols=61  Identities=28%  Similarity=0.383  Sum_probs=57.6

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      +.-+|++++|.++|||++++.|||.+.|...|.-|||        +||....+.|++..+++.+||.|+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIg--------vdflerqi~v~~Edvr~mlWdtag   78 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIG--------VDFLERQIKVLIEDVRSMLWDTAG   78 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccc--------hhhhhHHHHhhHHHHHHHHHHhcc
Confidence            3458999999999999999999999999999999999        899989999999999999999986

>cd01862 Rab7 Rab7 subfamily

Probab=98.48  E-value=6.3e-08  Score=83.49  Aligned_cols=57  Identities=28%  Similarity=0.420  Sum_probs=52.5

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|++++..+.|...+.+|+|        .++..+.+.+++..+++++||++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~D~~   57 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG--------ADFLTKEVTVDDKLVTLQIWDTA   57 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccc--------eEEEEEEEEECCEEEEEEEEeCC
Confidence            5899999999999999999999999999999999        77777778889999999999996

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01861 Rab6 Rab6 subfamily

Probab=98.48  E-value=6.2e-08  Score=82.68  Aligned_cols=57  Identities=33%  Similarity=0.487  Sum_probs=52.5

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++++...|...+.||++        .++..+.+.+++..++++|||+.
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~D~~   57 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIG--------IDFLSKTMYLEDKTVRLQLWDTA   57 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCcee--------eeEEEEEEEECCEEEEEEEEECC
Confidence            4889999999999999999999999999999999        78877888899999999999975

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>KOG4423|consensus

Probab=98.48  E-value=8.7e-10  Score=94.17  Aligned_cols=64  Identities=20%  Similarity=0.307  Sum_probs=56.9

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHHH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMM  364 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~~  364 (373)
                      ....+|+.++|+.++|||+++.||+...|+..|.+|||++|+.++ ..+.      |...++|||||||.-
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkV-l~wd------d~t~vRlqLwdIagQ   85 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKV-LQWD------DKTIVRLQLWDIAGQ   85 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHH-hccC------hHHHHHHHHhcchhh
Confidence            455689999999999999999999999999999999998888888 6676      667899999999963

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.48  E-value=6.7e-08  Score=82.65  Aligned_cols=57  Identities=26%  Similarity=0.374  Sum_probs=51.1

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+++|+.+.|...|.||++        ..+. +.+.+++..+.++|||++
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~   58 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE--------DSYT-KQCEIDGQWAILDILDTA   58 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc--------ceEE-EEEEECCEEEEEEEEECC
Confidence            47999999999999999999999999999999998        5553 667789999999999987

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.47  E-value=4.8e-08  Score=83.69  Aligned_cols=56  Identities=32%  Similarity=0.468  Sum_probs=49.9

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++++.+.|...|.||++        ..+ .+.+.+++..+.++|||++
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~l~i~Dt~   56 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE--------DSY-RKQIEIDGEVCLLDILDTA   56 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh--------hhE-EEEEEECCEEEEEEEEECC
Confidence            4899999999999999999999999999999998        444 3667789999999999986

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=98.47  E-value=6.2e-08  Score=83.02  Aligned_cols=57  Identities=23%  Similarity=0.286  Sum_probs=49.4

Q ss_pred             eEEEEEccCccccceeeEEeeeC--cccccccCCccccccccceeeeecceeeeC-CeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRG--QFHEYQESTIGGECQSSHSISFSMPTKNRL-NNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~--~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~-~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|++++..+  .|...|.||+|        .++..+.+.++ +..+.+.|||++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~l~i~Dt~   60 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTG--------CDFVVKEVPVDTDNTVELFIFDSA   60 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceE--------EEEEEEEEEeCCCCEEEEEEEECC
Confidence            48999999999999999999865  79999999999        67766666665 688999999985

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.46  E-value=5.2e-07  Score=78.65  Aligned_cols=24  Identities=33%  Similarity=0.455  Sum_probs=21.5

Q ss_pred             eEEEEEccCccccceeeEEeeeCc
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQ  321 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~  321 (373)
                      ++++++|.+++|||+|++++....
T Consensus       118 ~~~~~vG~pnvGKSslin~l~~~~  141 (172)
T cd04178         118 ITVGVVGFPNVGKSSLINSLKRSR  141 (172)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCcc
Confidence            678999999999999999998653

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd04148 RGK RGK subfamily

Probab=98.46  E-value=6.1e-08  Score=88.01  Aligned_cols=57  Identities=23%  Similarity=0.311  Sum_probs=51.5

Q ss_pred             eEEEEEccCccccceeeEEeeeCccc-ccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFH-EYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~-~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++|||||+|+++|+.+.|. ..|.||++        .++..+.+.+++..+.|.|||++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~--------~~~~~~~i~~~~~~~~l~i~Dt~   58 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGD--------DDTYERTVSVDGEESTLVVIDHW   58 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcc--------ccceEEEEEECCEEEEEEEEeCC
Confidence            58999999999999999999999997 78999998        67767888899999999999986

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.46  E-value=5e-08  Score=87.22  Aligned_cols=52  Identities=17%  Similarity=0.301  Sum_probs=48.1

Q ss_pred             EccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        303 LGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       303 iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|+++||||+|+.||+.+.|...|.||+|        .+|..+.+.+++..++|+|||++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig--------~~~~~~~~~~~~~~~~l~iwDt~   52 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLG--------VEVHPLVFHTNRGPIRFNVWDTA   52 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCcee--------EEEEEEEEEECCEEEEEEEEECC
Confidence            59999999999999999999999999999        77777778889999999999986

Ran is involved in the active transport of proteins through nuclear pores.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=98.46  E-value=7.5e-08  Score=86.77  Aligned_cols=57  Identities=30%  Similarity=0.413  Sum_probs=50.8

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++|+|||||+++|..+.|...|.||+|        .+|.......++..+++++||++
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~Dt~   62 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIG--------NLDPAKTIEPYRRNIKLQLWDTA   62 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCcee--------eeeEEEEEEeCCCEEEEEeecCC
Confidence            8999999999999999999999999999999999        66765555555669999999996

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=98.46  E-value=6.4e-08  Score=84.08  Aligned_cols=56  Identities=21%  Similarity=0.179  Sum_probs=49.7

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+.+|..+.|...|.||++         ++....+.+++..++++|||++
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~---------~~~~~~~~~~~~~~~~~i~Dt~   56 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF---------DNFSVVVLVDGKPVRLQLCDTA   56 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee---------eeeeEEEEECCEEEEEEEEECC
Confidence            5899999999999999999999999999999986         3334677889999999999987

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>KOG1144|consensus

Probab=98.45  E-value=7.9e-07  Score=90.27  Aligned_cols=160  Identities=16%  Similarity=0.099  Sum_probs=102.0

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-------ceeeeEEEEE--------EEECC----EEEEEEEEeCCCcc
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY-------LFSAAFITQT--------VCLDD----VTIRFEIWDTAGQE  101 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-------Tig~~~~~~~--------i~~~~----~~v~l~i~Dt~G~e  101 (373)
                      +....-++++|-   |||-|+..+-+.+....       -||.+|....        +.-++    +.--+.++||+|+|
T Consensus       472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE  551 (1064)
T KOG1144|consen  472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE  551 (1064)
T ss_pred             hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence            334556788886   99999999987654443       5565554322        00011    11237789999999


Q ss_pred             cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160        102 RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT  181 (373)
Q Consensus       102 ~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  181 (373)
                      .|..++.....-||.+|+|+|+...---+.++. +..+                        ...+.|.||..||+|..-
T Consensus       552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiES-i~lL------------------------R~rktpFivALNKiDRLY  606 (1064)
T KOG1144|consen  552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIES-INLL------------------------RMRKTPFIVALNKIDRLY  606 (1064)
T ss_pred             hhhhhhhccccccceEEEEeehhccCCcchhHH-HHHH------------------------HhcCCCeEEeehhhhhhc
Confidence            999999999999999999999976422222221 1122                        236889999999999643


Q ss_pred             CCcccC---------------HHH--------HHHHHHH-cC-------------CeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        182 SRRCVE---------------YSE--------GEAYAEE-NG-------------LLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       182 ~~~~v~---------------~~e--------~~~~~~~-~~-------------~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      .....+               ..+        +.+|+.+ ++             +..+++||-+|+||-+|+.+|+...
T Consensus       607 gwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt  686 (1064)
T KOG1144|consen  607 GWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT  686 (1064)
T ss_pred             ccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence            210000               000        1122221 01             2478999999999999999988765


Q ss_pred             chhh
Q psy18160        225 PKKE  228 (373)
Q Consensus       225 ~~~~  228 (373)
                      ...+
T Consensus       687 Qk~m  690 (1064)
T KOG1144|consen  687 QKTM  690 (1064)
T ss_pred             HHHH
Confidence            5443

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.44  E-value=2.3e-06  Score=76.91  Aligned_cols=56  Identities=20%  Similarity=0.102  Sum_probs=41.6

Q ss_pred             CCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        167 NIVIALAGNKADLPTSRRCVEYSEGEAYAEENG--LLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       167 ~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~--~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                      ..|.++++||+|+.+. .....++..+..+..+  .+++++||+++.|++++|+++.+.
T Consensus       148 ~~a~iiv~NK~Dl~~~-~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEA-VGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHcccc-chhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999653 2223344555555444  789999999999999999999764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG1490|consensus

Probab=98.44  E-value=1.1e-06  Score=85.95  Aligned_cols=155  Identities=15%  Similarity=0.115  Sum_probs=95.0

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCcceeeeEEEEEEE---ECCEEEEEEEEeCCCcccccc----cchh----hc-cC
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPYLFSAAFITQTVC---LDDVTIRFEIWDTAGQERYHT----LAPM----YY-RN  113 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~Tig~~~~~~~i~---~~~~~v~l~i~Dt~G~e~~~~----l~~~----~~-~~  113 (373)
                      ..+++|.   |||||+|.+..........  .|.++.+.   ++-+...+++.||||.-....    .+..    .+ +=
T Consensus       170 TlllcG~PNVGKSSf~~~vtradvevqpY--aFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHL  247 (620)
T KOG1490|consen  170 TLLVCGYPNVGKSSFNNKVTRADDEVQPY--AFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHL  247 (620)
T ss_pred             eEEEecCCCCCcHhhcccccccccccCCc--ccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHh
Confidence            4555555   9999999998776554400  01112221   233556789999999632211    1110    11 11


Q ss_pred             CcEEEEEEECCCHh--hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH-
Q psy18160        114 AQAAIIVYDITNQD--TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE-  190 (373)
Q Consensus       114 ad~iilv~D~~~~~--Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e-  190 (373)
                      -.+++++.|++..-  |...--.++..|.-                      .-.+.|.|+|.||+|+... ..++.+. 
T Consensus       248 raaVLYfmDLSe~CGySva~QvkLfhsIKp----------------------LFaNK~~IlvlNK~D~m~~-edL~~~~~  304 (620)
T KOG1490|consen  248 RSAVLYFMDLSEMCGYSVAAQVKLYHSIKP----------------------LFANKVTILVLNKIDAMRP-EDLDQKNQ  304 (620)
T ss_pred             hhhheeeeechhhhCCCHHHHHHHHHHhHH----------------------HhcCCceEEEeecccccCc-cccCHHHH
Confidence            35788999998754  44443345555543                      1247899999999998654 2233332 


Q ss_pred             --HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        191 --GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       191 --~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                        .+.+....+++++++|..+.+||.++-...+..+...+
T Consensus       305 ~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~R  344 (620)
T KOG1490|consen  305 ELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAAR  344 (620)
T ss_pred             HHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHHH
Confidence              23344555689999999999999988877776665443

>cd04177 RSR1 RSR1 subgroup

Probab=98.44  E-value=8.5e-08  Score=82.82  Aligned_cols=56  Identities=30%  Similarity=0.444  Sum_probs=51.2

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++|..+.|...|.||++        ..|. +.+.+++..+.++|||++
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~   57 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE--------DSYR-KQVEIDGRQCDLEILDTA   57 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcch--------heEE-EEEEECCEEEEEEEEeCC
Confidence            6899999999999999999999999999999998        5563 778889999999999987

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04140 ARHI_like ARHI subfamily

Probab=98.43  E-value=9e-08  Score=82.42  Aligned_cols=56  Identities=36%  Similarity=0.526  Sum_probs=49.0

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++|+.+.|...|.||++        ..|. +.+..++..+.++|||++
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~   57 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE--------DTYR-QVISCSKNICTLQITDTT   57 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcch--------heEE-EEEEECCEEEEEEEEECC
Confidence            7899999999999999999999999999999998        4443 455667889999999986

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.43  E-value=1.6e-06  Score=93.38  Aligned_cols=68  Identities=16%  Similarity=0.148  Sum_probs=52.3

Q ss_pred             EEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCC
Q psy18160         88 VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPN  167 (373)
Q Consensus        88 ~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (373)
                      ..+.+.++||||+..|.......++.+|++|+|+|+.+.-...... .+..+..                        .+
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~~------------------------~~  150 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG------------------------ER  150 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHHH------------------------CC
Confidence            3577899999999999887788889999999999998764333222 2233333                        47


Q ss_pred             CeEEEEEeCCCCC
Q psy18160        168 IVIALAGNKADLP  180 (373)
Q Consensus       168 ~piilVgnK~Dl~  180 (373)
                      +|++++.||+|..
T Consensus       151 ~p~i~~iNK~D~~  163 (843)
T PLN00116        151 IRPVLTVNKMDRC  163 (843)
T ss_pred             CCEEEEEECCccc
Confidence            8999999999986

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.42  E-value=2.5e-06  Score=80.38  Aligned_cols=114  Identities=6%  Similarity=-0.011  Sum_probs=65.2

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc-------hhhc
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA-------PMYY  111 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~-------~~~~  111 (373)
                      ...+++++|.   ||||++|++++.+....    +.+..........++  ..+.+|||||..+.....       ..++
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l  114 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFL  114 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence            4578999997   99999999998764322    111111112222344  578999999976542221       1122


Q ss_pred             --cCCcEEEEEEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160        112 --RNAQAAIIVYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT  181 (373)
Q Consensus       112 --~~ad~iilv~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  181 (373)
                        .+.|++++|..++... +... ...++.+......                   .--.+++||.|+.|...
T Consensus       115 ~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~-------------------~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGK-------------------DIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             hcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhh-------------------hhhccEEEEEECCccCC
Confidence              2689999997665321 2211 2233333331100                   01236899999999764

>PRK13768 GTPase; Provisional

Probab=98.42  E-value=8.4e-07  Score=82.22  Aligned_cols=110  Identities=18%  Similarity=0.142  Sum_probs=71.2

Q ss_pred             EEEEEeCCCcccc---cccchhhccC-----CcEEEEEEECCCHhhHHHHH--HHHHHHHhhCCCCCCcccccchhHHhh
Q psy18160         91 RFEIWDTAGQERY---HTLAPMYYRN-----AQAAIIVYDITNQDTFGRAK--SWVKELQRMAPPNIDTFGRAKSWVKEL  160 (373)
Q Consensus        91 ~l~i~Dt~G~e~~---~~l~~~~~~~-----ad~iilv~D~~~~~Sf~~i~--~~l~~i~~~~~~~~~~~~~~~~~~~~~  160 (373)
                      .+.+||++|+.+.   +..++.+++.     ++++++++|........+..  .|+.....                   
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-------------------  158 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-------------------  158 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-------------------
Confidence            5789999998664   3344333332     89999999996654333322  23322221                   


Q ss_pred             hhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH----------------------------HHHHcC--CeEEEEcCCCC
Q psy18160        161 QRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA----------------------------YAEENG--LLFMETSAKTA  210 (373)
Q Consensus       161 ~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~----------------------------~~~~~~--~~~~evSak~~  210 (373)
                         ...+.|+++|.||+|+.....   .++..+                            ..+..+  .+++++||+++
T Consensus       159 ---~~~~~~~i~v~nK~D~~~~~~---~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~  232 (253)
T PRK13768        159 ---LRLGLPQIPVLNKADLLSEEE---LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTG  232 (253)
T ss_pred             ---HHcCCCEEEEEEhHhhcCchh---HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCC
Confidence               113689999999999865411   111111                            122334  57899999999


Q ss_pred             CCHHHHHHHHHHHcc
Q psy18160        211 MNVNEIFVEIAKKLP  225 (373)
Q Consensus       211 ~gI~~lf~~L~~~i~  225 (373)
                      +|++++.++|.+.+.
T Consensus       233 ~gl~~L~~~I~~~l~  247 (253)
T PRK13768        233 EGFDELYAAIQEVFC  247 (253)
T ss_pred             cCHHHHHHHHHHHcC
Confidence            999999999988764

>cd04135 Tc10 TC10 subfamily

Probab=98.41  E-value=1.1e-07  Score=82.28  Aligned_cols=56  Identities=20%  Similarity=0.256  Sum_probs=49.6

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++|+.+.|...|.||++        ..+. ..+.+++..+.++|||++
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~   56 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF--------DHYA-VSVTVGGKQYLLGLYDTA   56 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee--------eeeE-EEEEECCEEEEEEEEeCC
Confidence            5899999999999999999999999999999997        4443 567789999999999986

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=98.40  E-value=7e-08  Score=82.95  Aligned_cols=56  Identities=27%  Similarity=0.373  Sum_probs=49.2

Q ss_pred             EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      |++++|++++|||+|+.+++.+.|...|.||++        ..+. +.+.++++.++++|||+.-
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~D~~g   56 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLE--------SLYS-RQVTIDGEQVSLEILDTAG   56 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChH--------Hhce-EEEEECCEEEEEEEEECCC
Confidence            589999999999999999999999999999997        4453 6677899999999999863

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PRK09866 hypothetical protein; Provisional

Probab=98.40  E-value=2.6e-06  Score=86.70  Aligned_cols=108  Identities=15%  Similarity=0.123  Sum_probs=70.9

Q ss_pred             EEEEEeCCCcccc-----cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCC
Q psy18160         91 RFEIWDTAGQERY-----HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP  165 (373)
Q Consensus        91 ~l~i~Dt~G~e~~-----~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (373)
                      .+.|.||||....     .......+..+|+++||+|.++..+..+- ..++.+..                      ..
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk----------------------~~  287 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILA----------------------VG  287 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHh----------------------cC
Confidence            4678899997542     11233468899999999999875443332 23333333                      11


Q ss_pred             CCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH----cC---CeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        166 PNIVIALAGNKADLPTSRRCVEYSEGEAYAEE----NG---LLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       166 ~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~----~~---~~~~evSak~~~gI~~lf~~L~~  222 (373)
                      ...|+++|.||+|+.+. .....+...++.+.    .+   ..+|++||+.|.|++++++.|..
T Consensus       288 K~~PVILVVNKIDl~dr-eeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        288 QSVPLYVLVNKFDQQDR-NSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             CCCCEEEEEEcccCCCc-ccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            23599999999998642 12223444444321    12   25899999999999999999876

>PTZ00416 elongation factor 2; Provisional

Probab=98.39  E-value=1.8e-06  Score=92.83  Aligned_cols=108  Identities=11%  Similarity=0.097  Sum_probs=72.1

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcC------------cCc---------ceeeeEEEEEEEEC--------CEEEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVF------------YPY---------LFSAAFITQTVCLD--------DVTIRFE   93 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~------------~~~---------Tig~~~~~~~i~~~--------~~~v~l~   93 (373)
                      ....++++|.   |||||+++++...-            .+.         |+...  ...+.++        ++...+.
T Consensus        18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~--~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKST--GISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeecc--ceEEEeecccccccCCCceEEE
Confidence            3446777776   99999999986311            110         22111  1122222        2356789


Q ss_pred             EEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEE
Q psy18160         94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALA  173 (373)
Q Consensus        94 i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilV  173 (373)
                      ++||||+.+|.......++.+|++|+|+|+.+.-..... ..+..+..                        .++|++++
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~------------------------~~~p~iv~  150 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ------------------------ERIRPVLF  150 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH------------------------cCCCEEEE
Confidence            999999998877777888999999999999875433322 22333333                        46799999


Q ss_pred             EeCCCCC
Q psy18160        174 GNKADLP  180 (373)
Q Consensus       174 gnK~Dl~  180 (373)
                      .||+|+.
T Consensus       151 iNK~D~~  157 (836)
T PTZ00416        151 INKVDRA  157 (836)
T ss_pred             EEChhhh
Confidence            9999986

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=98.38  E-value=1.2e-07  Score=82.22  Aligned_cols=54  Identities=24%  Similarity=0.326  Sum_probs=48.3

Q ss_pred             EEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        300 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       300 ~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ++++|++++|||+|+++|+.+.|...|.||++        ..|. +.+.+++..+.++|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~i~Dt~   54 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVF--------ENYS-ADVEVDGKPVELGLWDTA   54 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEE--------eeee-EEEEECCEEEEEEEEECC
Confidence            47899999999999999999999999999998        5564 667789999999999986

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=3.8e-06  Score=81.39  Aligned_cols=139  Identities=17%  Similarity=0.048  Sum_probs=89.6

Q ss_pred             ChhHHHHHhhhCcCcCc--------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCH-
Q psy18160         56 RVDCMTQIVINVVFYPY--------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ-  126 (373)
Q Consensus        56 GKTsLl~rl~~~~~~~~--------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~-  126 (373)
                      |||||+..+.+..-..-        |+...|+..  ...+  ..+.++|.+|++++-.-.-.-+...|.++||+|.++. 
T Consensus        12 gkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~--~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl   87 (447)
T COG3276          12 GKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYR--KLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGL   87 (447)
T ss_pred             cchhhhhhhcccccccchhhhhcCceEeeeeEec--cCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCc
Confidence            99999999998643322        554444422  2222  3788999999998765444556689999999999653 


Q ss_pred             --hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc-cCHHHHHHHHHHcCCeEE
Q psy18160        127 --DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC-VEYSEGEAYAEENGLLFM  203 (373)
Q Consensus       127 --~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~-v~~~e~~~~~~~~~~~~~  203 (373)
                        .+-+.+. .++.+                          .....++|.||+|..+..+. ...+++.+...--..++|
T Consensus        88 ~~qtgEhL~-iLdll--------------------------gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~  140 (447)
T COG3276          88 MAQTGEHLL-ILDLL--------------------------GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIF  140 (447)
T ss_pred             chhhHHHHH-HHHhc--------------------------CCCceEEEEeccccccHHHHHHHHHHHHhhccccccccc
Confidence              3333332 11111                          12346999999998764211 011112221122235789


Q ss_pred             EEcCCCCCCHHHHHHHHHHHcc
Q psy18160        204 ETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       204 evSak~~~gI~~lf~~L~~~i~  225 (373)
                      .+|+++|+||++|.+.|.....
T Consensus       141 ~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         141 KTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             ccccccCCCHHHHHHHHHHhhh
Confidence            9999999999999999988774

>PTZ00258 GTP-binding protein; Provisional

Probab=98.35  E-value=7.5e-06  Score=79.97  Aligned_cols=79  Identities=11%  Similarity=-0.012  Sum_probs=51.6

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCE---------------EEEEEEEeCCCc
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDV---------------TIRFEIWDTAGQ  100 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~---------------~v~l~i~Dt~G~  100 (373)
                      ..+.++++++|-   |||||+|++++......     |+....  ..+.+.+.               ...++++||||.
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~--g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL   95 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNT--ARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL   95 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceE--EEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence            355678889986   99999999988754332     444333  23333322               235899999996


Q ss_pred             cccc----ccchh---hccCCcEEEEEEECC
Q psy18160        101 ERYH----TLAPM---YYRNAQAAIIVYDIT  124 (373)
Q Consensus       101 e~~~----~l~~~---~~~~ad~iilv~D~~  124 (373)
                      .+-.    .+...   .++++|++++|+|..
T Consensus        96 v~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         96 VKGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            4321    12222   367899999999973

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.34  E-value=2.3e-07  Score=79.22  Aligned_cols=57  Identities=39%  Similarity=0.595  Sum_probs=51.1

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|++++....|...+.+|++        .++....+.+++..+.++|||+.
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~D~~   57 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIG--------VDFKTKTIEVDGKRVKLQIWDTA   57 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--------eEEEEEEEEECCEEEEEEEEECC
Confidence            5899999999999999999999999999999999        67666677788999999999964

Rab GTPases are implicated in vesicle trafficking.

>cd04114 Rab30 Rab30 subfamily

Probab=98.32  E-value=3.1e-07  Score=79.03  Aligned_cols=59  Identities=32%  Similarity=0.519  Sum_probs=53.5

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+.++..+.+...+.+|+|        .++..+.+.+++..+.+.+||++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~D~~   64 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG--------VDFMIKTVEIKGEKIKLQIWDTA   64 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee--------eEEEEEEEEECCEEEEEEEEECC
Confidence            458999999999999999999998889888999999        77777778899999999999986

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG1673|consensus

Probab=98.32  E-value=2.8e-07  Score=76.70  Aligned_cols=59  Identities=24%  Similarity=0.485  Sum_probs=55.4

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhh
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWV  361 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~  361 (373)
                      ...+|+.++|++.+|||+|+.+|+++++.+.|..|.|        ++|.-+++.+.|..|.+.|||+
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~G--------vN~mdkt~~i~~t~IsfSIwdl   76 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLG--------VNFMDKTVSIRGTDISFSIWDL   76 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhC--------ccceeeEEEecceEEEEEEEec
Confidence            4578999999999999999999999999999999999        7888888999999999999997

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.30  E-value=4.9e-06  Score=76.84  Aligned_cols=113  Identities=9%  Similarity=0.032  Sum_probs=66.1

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc---c-------
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT---L-------  106 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~---l-------  106 (373)
                      ..++++++|.   |||||+|++++......      |.....  .....++  ..+.+|||||......   .       
T Consensus        30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~--~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVRE--VSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEE--EEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            4578999997   99999999999765433      322222  2223344  5689999999764421   1       


Q ss_pred             chhhcc--CCcEEEEEEECCCH-hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160        107 APMYYR--NAQAAIIVYDITNQ-DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       107 ~~~~~~--~ad~iilv~D~~~~-~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  182 (373)
                      ...++.  ..|++++|..++.. .++.+ ...++.+......                   .--.++++|.||+|....
T Consensus       106 I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~-------------------~i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGP-------------------SIWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhCh-------------------hhHhCEEEEEeCCccCCC
Confidence            122333  57888888766542 22222 1233333331000                   011369999999998543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=8.5e-06  Score=75.89  Aligned_cols=155  Identities=15%  Similarity=0.135  Sum_probs=98.6

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhC---cCcCc-----ceeeeEEEEEEE------------E------C----CEEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINV---VFYPY-----LFSAAFITQTVC------------L------D----DVTIRF   92 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~---~~~~~-----Tig~~~~~~~i~------------~------~----~~~v~l   92 (373)
                      ..+.|-++|-   |||||...+.+-   .+++.     |+..-|....+.            .      .    .-...+
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            4577888886   999999999864   34443     333222111110            0      0    122367


Q ss_pred             EEEeCCCcccccccchhhccCCcEEEEEEECCCHh----hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160         93 EIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD----TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI  168 (373)
Q Consensus        93 ~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~----Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (373)
                      .|.|.+|+|-.-+..-+-..=-|++++|.+.+.+-    +-+++.    .+.-                       ..-.
T Consensus        89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~----AleI-----------------------igik  141 (415)
T COG5257          89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM----ALEI-----------------------IGIK  141 (415)
T ss_pred             EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH----HHhh-----------------------hccc
Confidence            89999999865433222233459999999998743    333332    1211                       1234


Q ss_pred             eEEEEEeCCCCCCCCcc-cCHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        169 VIALAGNKADLPTSRRC-VEYSEGEAYAEE---NGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       169 piilVgnK~Dl~~~~~~-v~~~e~~~~~~~---~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      .+++|-||.||...++. ...+++++|.+.   -+.|++++||..+.||+-+++.|.+.+...
T Consensus       142 ~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP  204 (415)
T COG5257         142 NIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP  204 (415)
T ss_pred             eEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence            68999999999764222 334455555543   246899999999999999999999998754

>cd01863 Rab18 Rab18 subfamily

Probab=98.29  E-value=3.2e-07  Score=78.26  Aligned_cols=57  Identities=35%  Similarity=0.524  Sum_probs=50.4

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|++++..+.|...+.||+|        .++....+.+++..+.++|||+.
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~D~~   57 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIG--------VDFKVKTLTVDGKKVKLAIWDTA   57 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCccc--------ceEEEEEEEECCEEEEEEEEECC
Confidence            5899999999999999999999999888999999        66655566678889999999986

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.28  E-value=2.9e-07  Score=78.48  Aligned_cols=57  Identities=28%  Similarity=0.391  Sum_probs=50.5

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      +|++++|++++|||||+++++.+.|...|.+|++        ..+. +.+.+++..+.++|||.+-
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~i~D~~g   57 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA--------DSYR-KKVVLDGEDVQLNILDTAG   57 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch--------hhEE-EEEEECCEEEEEEEEECCC
Confidence            5899999999999999999999999999999998        4553 6677899999999999853

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01882 BMS1 Bms1

Probab=98.26  E-value=1.2e-05  Score=73.10  Aligned_cols=133  Identities=9%  Similarity=0.031  Sum_probs=75.0

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      -..++++|.   |||||++.+.+..-...   ..|. +   .+ .......+.++||+|.-  ..+ ...++.+|++++|
T Consensus        39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllv  110 (225)
T cd01882          39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLL  110 (225)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence            355677775   99999999987521111   1221 1   11 11234567899999853  222 2346789999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCCCcccC--HHHHHH-HHH
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTSRRCVE--YSEGEA-YAE  196 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~~~~v~--~~e~~~-~~~  196 (373)
                      +|.+....... ..++..+..                        .+.| +++|.||.|+........  .++.++ +..
T Consensus       111 iDa~~~~~~~~-~~i~~~l~~------------------------~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~  165 (225)
T cd01882         111 IDASFGFEMET-FEFLNILQV------------------------HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWT  165 (225)
T ss_pred             EecCcCCCHHH-HHHHHHHHH------------------------cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHH
Confidence            99976443222 223333333                        2456 456999999864311111  112222 222


Q ss_pred             H--cCCeEEEEcCCCCCC
Q psy18160        197 E--NGLLFMETSAKTAMN  212 (373)
Q Consensus       197 ~--~~~~~~evSak~~~g  212 (373)
                      +  .+.+++.+||++.-.
T Consensus       166 ~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         166 EVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             hhCCCCcEEEEeeccCCC
Confidence            2  235799999998743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG3886|consensus

Probab=98.26  E-value=1.9e-06  Score=76.67  Aligned_cols=137  Identities=17%  Similarity=0.227  Sum_probs=83.6

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCc--Cc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccc-----cccchhhccC
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFY--PY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERY-----HTLAPMYYRN  113 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~--~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~-----~~l~~~~~~~  113 (373)
                      .|++++|.   ||||+-.-+..+...  ..    |+.+..  -.+.+-| .+.+.+||.+|||.+     .......+++
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveH--sh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~n   81 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEH--SHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRN   81 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeee--hhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence            46667775   999987665533221  11    444333  2333333 356899999999844     2245667899


Q ss_pred             CcEEEEEEECCCHhhHHHHHHH---HHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-cccCHH
Q psy18160        114 AQAAIIVYDITNQDTFGRAKSW---VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-RCVEYS  189 (373)
Q Consensus       114 ad~iilv~D~~~~~Sf~~i~~~---l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-~~v~~~  189 (373)
                      .+++++|||++.++=..++..+   ++.+.+                      ..+...++....|.|+.... +.+..+
T Consensus        82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~----------------------~SP~AkiF~l~hKmDLv~~d~r~~if~  139 (295)
T KOG3886|consen   82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQ----------------------NSPEAKIFCLLHKMDLVQEDARELIFQ  139 (295)
T ss_pred             heeeeeeeeccchhhhhhHHHHHHHHHHHHh----------------------cCCcceEEEEEeechhcccchHHHHHH
Confidence            9999999999887644444433   333333                      56788999999999996531 222222


Q ss_pred             H----HHHHHHHcCCeEEEEcCCC
Q psy18160        190 E----GEAYAEENGLLFMETSAKT  209 (373)
Q Consensus       190 e----~~~~~~~~~~~~~evSak~  209 (373)
                      +    ...+.+..++.++++|.-+
T Consensus       140 ~r~~~l~~~s~~~~~~~f~TsiwD  163 (295)
T KOG3886|consen  140 RRKEDLRRLSRPLECKCFPTSIWD  163 (295)
T ss_pred             HHHHHHHHhcccccccccccchhh
Confidence            1    2223333456678777653

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=98.22  E-value=3.5e-07  Score=78.91  Aligned_cols=51  Identities=18%  Similarity=0.200  Sum_probs=44.0

Q ss_pred             EEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        300 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       300 ~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ++++|++++|||+|+++|..+.|...|.||+|        .++    +.+++..++++|||++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g--------~~~----~~i~~~~~~l~i~Dt~   52 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTG--------FNS----VAIPTQDAIMELLEIG   52 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCC--------cce----EEEeeCCeEEEEEECC
Confidence            68999999999999999999999999999999        332    3456778999999986

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.20  E-value=2e-06  Score=82.51  Aligned_cols=93  Identities=19%  Similarity=0.172  Sum_probs=59.7

Q ss_pred             CCc-ccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeC
Q psy18160         98 AGQ-ERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNK  176 (373)
Q Consensus        98 ~G~-e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK  176 (373)
                      +|+ .++.......+..+|.++-|.|+.++.+...-.     +.+                      ...+.|.++|+||
T Consensus        18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~-----l~~----------------------~v~~k~~i~vlNK   70 (322)
T COG1161          18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPE-----LER----------------------IVKEKPKLLVLNK   70 (322)
T ss_pred             CCchHHHHHHHHHhcccCCEEEEEEeccccccccCcc-----HHH----------------------HHccCCcEEEEeh
Confidence            443 455566677788999999999999987533211     111                      0123455999999


Q ss_pred             CCCCCCCcccCHHHHHH-HHHHcCCeEEEEcCCCCCCHHHHHHHH
Q psy18160        177 ADLPTSRRCVEYSEGEA-YAEENGLLFMETSAKTAMNVNEIFVEI  220 (373)
Q Consensus       177 ~Dl~~~~~~v~~~e~~~-~~~~~~~~~~evSak~~~gI~~lf~~L  220 (373)
                      +||.+.  .+ .++..+ +.+..+...+.+|++.+.+...+...+
T Consensus        71 ~DL~~~--~~-~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~  112 (322)
T COG1161          71 ADLAPK--EV-TKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKAL  112 (322)
T ss_pred             hhcCCH--HH-HHHHHHHHHhcCCCccEEEEeecccCccchHHHH
Confidence            999763  22 333333 333336677889999888777666433

>KOG0458|consensus

Probab=98.19  E-value=2e-05  Score=78.69  Aligned_cols=153  Identities=16%  Similarity=0.154  Sum_probs=98.6

Q ss_pred             ccCCCCCCcEEEEEEcC---ChhHHHHHhhhCc----------------------CcC---------c-ceeeeEEEEEE
Q psy18160         39 MSGKRQSDCMAQIWLKD---RVDCMTQIVINVV----------------------FYP---------Y-LFSAAFITQTV   83 (373)
Q Consensus        39 ~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~----------------------~~~---------~-Tig~~~~~~~i   83 (373)
                      -.+..+...+..+++|.   |||||+-+++..-                      |.-         . -.|+....+..
T Consensus       169 ~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~  248 (603)
T KOG0458|consen  169 DEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTT  248 (603)
T ss_pred             ccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeE
Confidence            34456668899999997   9999998887431                      110         0 34455555666


Q ss_pred             EECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHH-------HHHHHHHHhhCCCCCCcccccchh
Q psy18160         84 CLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRA-------KSWVKELQRMAPPNIDTFGRAKSW  156 (373)
Q Consensus        84 ~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i-------~~~l~~i~~~~~~~~~~~~~~~~~  156 (373)
                      .++-....+.|.|+||+..|-.-.-.-...||++++|+|++- ..|+.-       .+....++.               
T Consensus       249 ~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~---------------  312 (603)
T KOG0458|consen  249 WFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRS---------------  312 (603)
T ss_pred             EEecCceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHH---------------
Confidence            667777889999999987776544445668999999999864 333321       111111111               


Q ss_pred             HHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH----HHHH-HHcC-----CeEEEEcCCCCCCHHHH
Q psy18160        157 VKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG----EAYA-EENG-----LLFMETSAKTAMNVNEI  216 (373)
Q Consensus       157 ~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~----~~~~-~~~~-----~~~~evSak~~~gI~~l  216 (373)
                            .  .-.-++|+.||+|+.+= .+-..+++    ..|. +..|     +.|+++|+.+|+|+...
T Consensus       313 ------L--gi~qlivaiNKmD~V~W-sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  313 ------L--GISQLIVAINKMDLVSW-SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             ------c--CcceEEEEeecccccCc-cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence                  1  13358999999999652 22223333    2344 3444     46999999999998654

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.19  E-value=5.5e-07  Score=79.12  Aligned_cols=57  Identities=19%  Similarity=0.254  Sum_probs=46.8

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeee-CCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNR-LNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v-~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|++++..+.|... .||+|        .++....+.+ ++..+.++|||++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~--------~~~~~~~~~~~~~~~~~l~l~Dt~   60 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKG--------FNTEKIKVSLGNSKGITFHFWDVG   60 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccc--------cceeEEEeeccCCCceEEEEEECC
Confidence            48999999999999999999999988765 68999        5554444444 4578999999986

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>KOG0410|consensus

Probab=98.17  E-value=1.6e-06  Score=80.71  Aligned_cols=148  Identities=16%  Similarity=0.151  Sum_probs=92.9

Q ss_pred             CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcc---------ccc
Q psy18160         42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQE---------RYH  104 (373)
Q Consensus        42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e---------~~~  104 (373)
                      .......-+.++|-   |||||+++++.....+.     |...+.  +...+... ..+-+.||.|--         .|.
T Consensus       173 r~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~--h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~  249 (410)
T KOG0410|consen  173 REGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTL--HSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQ  249 (410)
T ss_pred             cccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchh--hhccCCCC-cEEEEeechhhhhhCcHHHHHHHH
Confidence            33334445666664   99999999997766665     554443  34444322 235677998842         122


Q ss_pred             ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe----EEEEEeCCCCC
Q psy18160        105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV----IALAGNKADLP  180 (373)
Q Consensus       105 ~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----iilVgnK~Dl~  180 (373)
                      +. -.-+..+|.++-|.|+++|..-+.....+.-+..                     ...+..|    ++=|-||.|..
T Consensus       250 AT-LeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~---------------------igv~~~pkl~~mieVdnkiD~e  307 (410)
T KOG0410|consen  250 AT-LEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQ---------------------IGVPSEPKLQNMIEVDNKIDYE  307 (410)
T ss_pred             HH-HHHHhhcceEEEEeecCCccHHHHHHHHHHHHHh---------------------cCCCcHHHHhHHHhhccccccc
Confidence            21 1225689999999999999876666665555554                     2233333    45567777764


Q ss_pred             CCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        181 TSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       181 ~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +.  .++.       +.++  .+.+||++|+|++++...+-..+.
T Consensus       308 ~~--~~e~-------E~n~--~v~isaltgdgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  308 ED--EVEE-------EKNL--DVGISALTGDGLEELLKAEETKVA  341 (410)
T ss_pred             cc--cCcc-------ccCC--ccccccccCccHHHHHHHHHHHhh
Confidence            42  1111       1222  577999999999999988766654

>cd00154 Rab Rab family

Probab=98.17  E-value=8.4e-07  Score=74.64  Aligned_cols=57  Identities=42%  Similarity=0.647  Sum_probs=51.3

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|.+++|||+|++++..+.+...+.+|+|        .++....+.+++..+.+.|||+.
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~D~~   57 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIG--------VDFKSKTIEIDGKTVKLQIWDTA   57 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCcee--------eeeEEEEEEECCEEEEEEEEecC
Confidence            4789999999999999999999999999999999        77766777788899999999975

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04147 Ras_dva Ras-dva subfamily

Probab=98.16  E-value=5.9e-07  Score=79.94  Aligned_cols=55  Identities=20%  Similarity=0.338  Sum_probs=48.3

Q ss_pred             EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      |++++|++++|||+|+++|+.+.|...|.+|++         ++..+.+.+++..+.++|||++
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~---------~~~~~~~~~~~~~~~l~i~D~~   55 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE---------EMHRKEYEVGGVSLTLDILDTS   55 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh---------hheeEEEEECCEEEEEEEEECC
Confidence            689999999999999999999999999999987         3444667788999999999986

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04123 Rab21 Rab21 subfamily

Probab=98.15  E-value=1e-06  Score=74.79  Aligned_cols=57  Identities=42%  Similarity=0.553  Sum_probs=49.6

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++++.+.|...+.+|++        .++....+.+.+..+.+.+||..
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~D~~   57 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQ--------ASFFQKTVNIGGKRIDLAIWDTA   57 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccc--------eeEEEEEEEECCEEEEEEEEECC
Confidence            5899999999999999999999999888888988        55555666677889999999975

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd00157 Rho Rho (Ras homology) family

Probab=98.14  E-value=1e-06  Score=75.83  Aligned_cols=56  Identities=23%  Similarity=0.340  Sum_probs=49.3

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++++.+.|...+.||+.        ..+ ...+.+++..+.+++||+.
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~l~~~D~~   56 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF--------DNY-SATVTVDGKQVNLGLWDTA   56 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee--------eee-EEEEEECCEEEEEEEEeCC
Confidence            5899999999999999999999999888999987        445 3677788999999999975

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.14  E-value=8.4e-06  Score=70.21  Aligned_cols=50  Identities=20%  Similarity=0.225  Sum_probs=36.7

Q ss_pred             EEEEEeCCCcc----cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHH
Q psy18160         91 RFEIWDTAGQE----RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ  140 (373)
Q Consensus        91 ~l~i~Dt~G~e----~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~  140 (373)
                      .+.|+||||..    ....++..++..+|++|+|.+.+...+-.+...+.+...
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~  155 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLD  155 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHT
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhc
Confidence            37789999963    334677888999999999999998665555555544443

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd04126 Rab20 Rab20 subfamily

Probab=98.13  E-value=9.2e-07  Score=80.20  Aligned_cols=52  Identities=33%  Similarity=0.486  Sum_probs=43.0

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|+++||||+|+++|+.+.|.. +.||+|        .+|..+.+    ..+.|.|||++
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig--------~~~~~~~~----~~~~l~iwDt~   52 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVG--------GAFYLKQW----GPYNISIWDTA   52 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccc--------eEEEEEEe----eEEEEEEEeCC
Confidence            589999999999999999999999975 689999        55542322    46789999997

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0468|consensus

Probab=98.12  E-value=1.1e-05  Score=81.20  Aligned_cols=113  Identities=12%  Similarity=0.185  Sum_probs=75.9

Q ss_pred             CCCCcEEEEEEcC----ChhHHHHHhhhCcCcCc------------------ceeeeEEEEEEE-----ECCEEEEEEEE
Q psy18160         43 RQSDCMAQIWLKD----RVDCMTQIVINVVFYPY------------------LFSAAFITQTVC-----LDDVTIRFEIW   95 (373)
Q Consensus        43 ~~~~~i~ivvlG~----GKTsLl~rl~~~~~~~~------------------Tig~~~~~~~i~-----~~~~~v~l~i~   95 (373)
                      .....++.+.+.|    |||+|+.-+........                  ..|......-+.     .+++.+.+++.
T Consensus       123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil  202 (971)
T KOG0468|consen  123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL  202 (971)
T ss_pred             cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence            3334455444444    99999998876533221                  111111111111     25788899999


Q ss_pred             eCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEe
Q psy18160         96 DTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGN  175 (373)
Q Consensus        96 Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgn  175 (373)
                      ||+|+-.|..-....++-+|++++|+|+.+.-.++. ++.++.+..                        ...|+++|.|
T Consensus       203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq------------------------~~~~i~vviN  257 (971)
T KOG0468|consen  203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ------------------------NRLPIVVVIN  257 (971)
T ss_pred             cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh------------------------ccCcEEEEEe
Confidence            999999998888888999999999999987766543 233333322                        4789999999


Q ss_pred             CCCCC
Q psy18160        176 KADLP  180 (373)
Q Consensus       176 K~Dl~  180 (373)
                      |.|..
T Consensus       258 KiDRL  262 (971)
T KOG0468|consen  258 KVDRL  262 (971)
T ss_pred             hhHHH
Confidence            99963

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.11  E-value=2e-05  Score=82.23  Aligned_cols=110  Identities=15%  Similarity=0.096  Sum_probs=74.5

Q ss_pred             EEEEEEc--C-ChhHHHHHhhhCc--------------CcCc-----ceeeeEEEEEEEECCE-EEEEEEEeCCCccccc
Q psy18160         48 MAQIWLK--D-RVDCMTQIVINVV--------------FYPY-----LFSAAFITQTVCLDDV-TIRFEIWDTAGQERYH  104 (373)
Q Consensus        48 i~ivvlG--~-GKTsLl~rl~~~~--------------~~~~-----Tig~~~~~~~i~~~~~-~v~l~i~Dt~G~e~~~  104 (373)
                      ..+.+++  + |||||..+++-..              +.+.     ..|.+.....+...-+ .+.++++||||+-.|.
T Consensus        11 RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt   90 (697)
T COG0480          11 RNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFT   90 (697)
T ss_pred             eEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccH
Confidence            3444444  4 9999999997321              1111     2333333333333223 5789999999999999


Q ss_pred             ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160        105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       105 ~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  182 (373)
                      .-....++-+|++++|+|+.+.-..+.-.-|.. +.+                        .++|.+++.||+|....
T Consensus        91 ~EV~rslrvlDgavvVvdaveGV~~QTEtv~rq-a~~------------------------~~vp~i~fiNKmDR~~a  143 (697)
T COG0480          91 IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQ-ADK------------------------YGVPRILFVNKMDRLGA  143 (697)
T ss_pred             HHHHHHHHhhcceEEEEECCCCeeecHHHHHHH-Hhh------------------------cCCCeEEEEECcccccc
Confidence            989999999999999999987544333333332 222                        58899999999998654

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.11  E-value=3e-05  Score=69.91  Aligned_cols=155  Identities=11%  Similarity=0.071  Sum_probs=85.7

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc--------cc---h
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT--------LA---P  108 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~--------l~---~  108 (373)
                      .+|+++|.   ||||++|.+++......     +...........+++..  +.++||||.-....        +.   .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            36889997   99999999998865433     12223333444677754  67999999532111        11   1


Q ss_pred             hhccCCcEEEEEEECCCHhhHHHH--HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc-
Q psy18160        109 MYYRNAQAAIIVYDITNQDTFGRA--KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC-  185 (373)
Q Consensus       109 ~~~~~ad~iilv~D~~~~~Sf~~i--~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~-  185 (373)
                      ....+.|+++||+.+. +-+-.+.  .+++..+-.   .                  .. -..++||.|..|....... 
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG---~------------------~~-~k~~ivvfT~~d~~~~~~~~  135 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFG---E------------------EI-WKHTIVVFTHADELEDDSLE  135 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHC---G------------------GG-GGGEEEEEEEGGGGTTTTHH
T ss_pred             hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHcc---H------------------HH-HhHhhHHhhhccccccccHH
Confidence            1245789999999998 3332222  223332211   0                  00 1247788888886554110 


Q ss_pred             --cC---HHHHHHHHHHcCCeEEEEcCC------CCCCHHHHHHHHHHHcchh
Q psy18160        186 --VE---YSEGEAYAEENGLLFMETSAK------TAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       186 --v~---~~e~~~~~~~~~~~~~evSak------~~~gI~~lf~~L~~~i~~~  227 (373)
                        +.   .+..+++.+..+-.|...+.+      ....+.+|++.+-..+.++
T Consensus       136 ~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  136 DYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence              11   122455667778888888877      2345777777776655543

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd04129 Rho2 Rho2 subfamily

Probab=98.09  E-value=1.5e-06  Score=76.54  Aligned_cols=56  Identities=27%  Similarity=0.325  Sum_probs=49.6

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .|++++|++|+|||+|++++..+.|...+.+|++        .+|. ..+.+++..+.+.+||++
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~   57 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVF--------ENYV-TDCRVDGKPVQLALWDTA   57 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCccc--------ceEE-EEEEECCEEEEEEEEECC
Confidence            5899999999999999999999999999999998        5554 566778999999999987

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0461|consensus

Probab=98.08  E-value=4.7e-05  Score=71.55  Aligned_cols=151  Identities=16%  Similarity=0.182  Sum_probs=92.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhC----cCcCc--------ceeeeEEEEEEEE-----CCEEEEEEEEeCCCcccccccc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINV----VFYPY--------LFSAAFITQTVCL-----DDVTIRFEIWDTAGQERYHTLA  107 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~----~~~~~--------Tig~~~~~~~i~~-----~~~~v~l~i~Dt~G~e~~~~l~  107 (373)
                      ..+.++|-   |||+|.+++..-    .|+..        |....|....+..     .++...+.++|++|+.   +++
T Consensus         8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa---sLI   84 (522)
T KOG0461|consen    8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA---SLI   84 (522)
T ss_pred             eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH---HHH
Confidence            67788886   999999999753    23322        3333333222221     3566788999999974   455


Q ss_pred             hhhccC---CcEEEEEEECCCHhhHHHHHH-HHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-
Q psy18160        108 PMYYRN---AQAAIIVYDITNQDTFGRAKS-WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-  182 (373)
Q Consensus       108 ~~~~~~---ad~iilv~D~~~~~Sf~~i~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-  182 (373)
                      +..+.+   .|..++|+|+.....-+.++- .+.++                          -....++|.||.|+..+ 
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~--------------------------~c~klvvvinkid~lpE~  138 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL--------------------------LCKKLVVVINKIDVLPEN  138 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhhhhh--------------------------hccceEEEEeccccccch
Confidence            665554   478899999976443222221 11111                          12356788888887543 


Q ss_pred             CcccCHHH-HHHHHHHc-------CCeEEEEcCCCC----CCHHHHHHHHHHHcchh
Q psy18160        183 RRCVEYSE-GEAYAEEN-------GLLFMETSAKTA----MNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       183 ~~~v~~~e-~~~~~~~~-------~~~~~evSak~~----~gI~~lf~~L~~~i~~~  227 (373)
                      +|....++ +.+..+.+       +.|++++||+.|    ++|.+|.+.|.+++.+-
T Consensus       139 qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P  195 (522)
T KOG0461|consen  139 QRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP  195 (522)
T ss_pred             hhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence            33333333 22233222       268999999999    78888888887777643

>cd04149 Arf6 Arf6 subfamily

Probab=98.08  E-value=1.1e-06  Score=76.25  Aligned_cols=53  Identities=25%  Similarity=0.349  Sum_probs=42.9

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|++++..+.|.. +.||+|        .++.  .+  ....++++|||++
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g--------~~~~--~~--~~~~~~~~l~Dt~   61 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--------FNVE--TV--TYKNVKFNVWDVG   61 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcc--------cceE--EE--EECCEEEEEEECC
Confidence            4899999999999999999999888864 789999        4432  22  2356899999987

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=98.07  E-value=1e-06  Score=75.55  Aligned_cols=52  Identities=23%  Similarity=0.374  Sum_probs=42.3

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|.+++|||+|+.|+..+.|. .|.||+|        .++.  .+.  ...+.++|||++
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g--------~~~~--~~~--~~~~~~~l~D~~   52 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--------FNVE--TVE--YKNISFTVWDVG   52 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCC--------cceE--EEE--ECCEEEEEEECC
Confidence            48999999999999999999989997 4889999        4432  222  346889999986

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=98.06  E-value=1.6e-06  Score=75.59  Aligned_cols=56  Identities=34%  Similarity=0.435  Sum_probs=49.1

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .|++++|.+|+|||+|++++..+.|...+.||++        ..+. +.+.+++..+.++|||+.
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~l~D~~   57 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIE--------NTFS-KIIRYKGQDYHLEIVDTA   57 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchh--------hhEE-EEEEECCEEEEEEEEECC
Confidence            5899999999999999999999999999999998        4553 667788889999999963

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=98.06  E-value=1.2e-06  Score=77.07  Aligned_cols=53  Identities=23%  Similarity=0.350  Sum_probs=43.6

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+.++..+.|.. +.||+|        .++.  .+  +...+.++|||++
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~--------~~~~--~~--~~~~~~~~l~D~~   69 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIG--------FNVE--TV--EYKNLKFTMWDVG   69 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccc--------cceE--EE--EECCEEEEEEECC
Confidence            4899999999999999999999888975 789999        4442  22  3356889999997

>cd01893 Miro1 Miro1 subfamily

Probab=98.05  E-value=1.6e-06  Score=74.71  Aligned_cols=55  Identities=29%  Similarity=0.452  Sum_probs=44.4

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .|++++|++++|||+|+++|..+.|...+.+|..         ++. ....+++..++++|||++
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~i~Dt~   55 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP---------EIT-IPADVTPERVPTTIVDTS   55 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc---------ceE-eeeeecCCeEEEEEEeCC
Confidence            3889999999999999999999999877655443         332 344567889999999987

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.05  E-value=8.3e-05  Score=71.95  Aligned_cols=75  Identities=13%  Similarity=0.002  Sum_probs=48.9

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEE---------------EEEEEEeCCCccccc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVT---------------IRFEIWDTAGQERYH  104 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~---------------v~l~i~Dt~G~e~~~  104 (373)
                      +++.++|-   |||||+|++++......     |+....  ..+.+.+..               ..+.+.|+||..+-.
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~--G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV--GVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceE--EEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            57888886   99999999998773222     444332  233333321               358999999964321


Q ss_pred             ----ccchh---hccCCcEEEEEEECC
Q psy18160        105 ----TLAPM---YYRNAQAAIIVYDIT  124 (373)
Q Consensus       105 ----~l~~~---~~~~ad~iilv~D~~  124 (373)
                          .+...   .++.+|++++|+|..
T Consensus        81 ~~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence                12222   367899999999984

>PLN00223 ADP-ribosylation factor; Provisional

Probab=98.04  E-value=1.6e-06  Score=76.16  Aligned_cols=53  Identities=23%  Similarity=0.353  Sum_probs=43.6

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+.++..+.|. .+.||+|        .++.  .  ++...+.++|||++
T Consensus        17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g--------~~~~--~--~~~~~~~~~i~D~~   69 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--------FNVE--T--VEYKNISFTVWDVG   69 (181)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcc--------eeEE--E--EEECCEEEEEEECC
Confidence            489999999999999999999988886 4789999        4442  2  23456899999986

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.03  E-value=2.6e-05  Score=74.75  Aligned_cols=105  Identities=14%  Similarity=0.035  Sum_probs=64.1

Q ss_pred             EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160         89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI  168 (373)
Q Consensus        89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (373)
                      .+.+.|.||+|...-.   ......||.++++.+....+....+.   ..+.+                          +
T Consensus       148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E--------------------------~  195 (332)
T PRK09435        148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIME--------------------------L  195 (332)
T ss_pred             CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhhh--------------------------h
Confidence            3567889999865222   12466799999997644444333322   21222                          1


Q ss_pred             eEEEEEeCCCCCCCCc-ccCHHHHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        169 VIALAGNKADLPTSRR-CVEYSEGEAYAEE-------NGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       169 piilVgnK~Dl~~~~~-~v~~~e~~~~~~~-------~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      .-++|.||+|+..... .....+.......       +..+++.+||+++.||+++++.|.+.+.
T Consensus       196 aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        196 ADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             hheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            2389999999875311 0111122222221       1247999999999999999999988654

>KOG0096|consensus

Probab=98.02  E-value=4.6e-06  Score=71.91  Aligned_cols=60  Identities=25%  Similarity=0.407  Sum_probs=52.6

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCe-EEEEEehhhHH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNN-NVPITFVWVIM  363 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~-~~~l~iw~~~~  363 (373)
                      ...+|++++|+++.||++++.|.+.++|...|.+|+|        ++.+ .++.-.+. .|++..||.|.
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~G--------v~~~-pl~f~tn~g~irf~~wdtag   68 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLG--------VEVH-PLLFDTNRGQIRFNVWDTAG   68 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcce--------eEEe-eeeeecccCcEEEEeeeccc
Confidence            4579999999999999999999999999999999999        6765 66655655 49999999985

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=98.01  E-value=1.8e-06  Score=75.25  Aligned_cols=53  Identities=23%  Similarity=0.349  Sum_probs=42.9

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+.++..+.|. .+.||+|        .++.  .+..  ..++++|||++
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~--------~~~~--~~~~--~~~~l~l~D~~   65 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIG--------FNVE--TVTY--KNISFTVWDVG   65 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccc--------cceE--EEEE--CCEEEEEEECC
Confidence            589999999999999999999988885 5889999        4442  2222  45899999987

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.97  E-value=3e-05  Score=73.69  Aligned_cols=104  Identities=18%  Similarity=0.047  Sum_probs=62.2

Q ss_pred             EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160         89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI  168 (373)
Q Consensus        89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (373)
                      .+.+.|.||+|.-..   ....+..+|.++++-+.   .+-+++..+...+                          .+.
T Consensus       126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~---~~~~el~~~~~~l--------------------------~~~  173 (300)
T TIGR00750       126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIP---GTGDDLQGIKAGL--------------------------MEI  173 (300)
T ss_pred             CCCEEEEeCCCCchh---hhHHHHhhceEEEEecC---CccHHHHHHHHHH--------------------------hhh
Confidence            456778898874311   12245667888877443   3334444433322                          245


Q ss_pred             eEEEEEeCCCCCCCCcccCH-H-H----HHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        169 VIALAGNKADLPTSRRCVEY-S-E----GEAYAEE---NGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       169 piilVgnK~Dl~~~~~~v~~-~-e----~~~~~~~---~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      |.++|.||+|+..... ... . +    ...+...   +..+++++||+++.|+++++++|.+.+.
T Consensus       174 ~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       174 ADIYVVNKADGEGATN-VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             ccEEEEEcccccchhH-HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            6799999999875411 100 0 0    0111111   2246899999999999999999987643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG1532|consensus

Probab=97.97  E-value=9.9e-05  Score=67.53  Aligned_cols=115  Identities=15%  Similarity=0.220  Sum_probs=66.5

Q ss_pred             EEEEEEeCCCccc-ccc-----cchhhcc--CCcEEEEEEECC---CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHH
Q psy18160         90 IRFEIWDTAGQER-YHT-----LAPMYYR--NAQAAIIVYDIT---NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVK  158 (373)
Q Consensus        90 v~l~i~Dt~G~e~-~~~-----l~~~~~~--~ad~iilv~D~~---~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~  158 (373)
                      ....++|||||-+ |..     ++...++  ...++++++|..   ++.+|-.-.-|.--+                   
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi-------------------  176 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI-------------------  176 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH-------------------
Confidence            4577899999843 221     2222222  345777888864   344554322222111                   


Q ss_pred             hhhhcCCCCCeEEEEEeCCCCCCCCcc---cC----HHHHHH---------HHHH---------cCCeEEEEcCCCCCCH
Q psy18160        159 ELQRMAPPNIVIALAGNKADLPTSRRC---VE----YSEGEA---------YAEE---------NGLLFMETSAKTAMNV  213 (373)
Q Consensus       159 ~~~~~~~~~~piilVgnK~Dl~~~~~~---v~----~~e~~~---------~~~~---------~~~~~~evSak~~~gI  213 (373)
                          ......|.|+|.||+|+.+..-.   .+    .+++.+         +.+.         .++..+-|||.+|.|.
T Consensus       177 ----lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~  252 (366)
T KOG1532|consen  177 ----LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF  252 (366)
T ss_pred             ----HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence                12357899999999999765211   00    111111         0000         1356899999999999


Q ss_pred             HHHHHHHHHHcchh
Q psy18160        214 NEIFVEIAKKLPKK  227 (373)
Q Consensus       214 ~~lf~~L~~~i~~~  227 (373)
                      +++|..+...+.+.
T Consensus       253 ddf~~av~~~vdEy  266 (366)
T KOG1532|consen  253 DDFFTAVDESVDEY  266 (366)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999987766543

>cd04158 ARD1 ARD1 subfamily

Probab=97.96  E-value=2.3e-06  Score=74.07  Aligned_cols=51  Identities=25%  Similarity=0.388  Sum_probs=41.8

Q ss_pred             EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      |++++|.+++|||+|++++..+.|.. |.||+|        .++.  .  ++...+.++|||++
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~--------~~~~--~--~~~~~~~i~l~Dt~   51 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIG--------FNVE--T--VEYKNLKFTIWDVG   51 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--------eeEE--E--EEECCEEEEEEECC
Confidence            57999999999999999999998875 899999        5552  2  23356889999987

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>smart00053 DYNc Dynamin, GTPase

Probab=97.95  E-value=5.3e-05  Score=69.40  Aligned_cols=69  Identities=13%  Similarity=0.075  Sum_probs=44.4

Q ss_pred             EEEEEEeCCCcccc-------------cccchhhcc-CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccch
Q psy18160         90 IRFEIWDTAGQERY-------------HTLAPMYYR-NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKS  155 (373)
Q Consensus        90 v~l~i~Dt~G~e~~-------------~~l~~~~~~-~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~  155 (373)
                      ..|.++||||....             ..+...|++ ..+.+++|+|++..-.-.+..++...+..              
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--------------  190 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--------------  190 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--------------
Confidence            46888999997421             224566777 45689999988653322222233333322              


Q ss_pred             hHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160        156 WVKELQRMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       156 ~~~~~~~~~~~~~piilVgnK~Dl~~~  182 (373)
                                ...|+++|.||.|..+.
T Consensus       191 ----------~~~rti~ViTK~D~~~~  207 (240)
T smart00053      191 ----------QGERTIGVITKLDLMDE  207 (240)
T ss_pred             ----------cCCcEEEEEECCCCCCc
Confidence                      46799999999998753

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd00876 Ras Ras family

Probab=97.95  E-value=3e-06  Score=71.73  Aligned_cols=56  Identities=30%  Similarity=0.408  Sum_probs=47.5

Q ss_pred             EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      |++++|++++|||+|+++++.+.|...+.||.+        ..+ .+.+.+++..++++|||+.-
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~l~D~~g   56 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE--------DSY-RKTIVVDGETYTLDILDTAG   56 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh--------HeE-EEEEEECCEEEEEEEEECCC
Confidence            689999999999999999999889999999988        233 35566788899999999764

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=97.95  E-value=4.8e-06  Score=69.61  Aligned_cols=57  Identities=18%  Similarity=0.279  Sum_probs=49.7

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|.+++|||+|++++..+.+...+.+|++        .++....+..++..+.+.+||+.
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~D~~   58 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTT--------RNYVTTVIEEDGKTYKFNLLDTA   58 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCce--------eeeeEEEEEECCEEEEEEEEECC
Confidence            6899999999999999999999988888999999        66665556778888999999975

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=97.95  E-value=9.6e-05  Score=71.64  Aligned_cols=124  Identities=16%  Similarity=0.065  Sum_probs=77.5

Q ss_pred             EEEEEEcC-ChhHHHHHhhhC----------------cCcCc-------ceeeeEEEEEEEECCEEEEEEEEeCCCcccc
Q psy18160         48 MAQIWLKD-RVDCMTQIVINV----------------VFYPY-------LFSAAFITQTVCLDDVTIRFEIWDTAGQERY  103 (373)
Q Consensus        48 i~ivvlG~-GKTsLl~rl~~~----------------~~~~~-------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~  103 (373)
                      ..|+.--+ |||||..+++--                .+..+       -.|....+-.+.++-..+.++|.||||++.|
T Consensus        15 FAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDF   94 (528)
T COG4108          15 FAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDF   94 (528)
T ss_pred             eeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcccc
Confidence            34444445 999999998621                12221       2333333334444444567889999999999


Q ss_pred             cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC
Q psy18160        104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR  183 (373)
Q Consensus       104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~  183 (373)
                      ..-....+.-+|.++.|.|+...---+. .+.++-.+                        ..++||+-..||.|.... 
T Consensus        95 SEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcr------------------------lR~iPI~TFiNKlDR~~r-  148 (528)
T COG4108          95 SEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCR------------------------LRDIPIFTFINKLDREGR-  148 (528)
T ss_pred             chhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHh------------------------hcCCceEEEeeccccccC-
Confidence            8877777888999999999875322111 12233222                        378999999999997653 


Q ss_pred             cccCHHHHHHHHHHcC
Q psy18160        184 RCVEYSEGEAYAEENG  199 (373)
Q Consensus       184 ~~v~~~e~~~~~~~~~  199 (373)
                        -+.+-..+..+.++
T Consensus       149 --dP~ELLdEiE~~L~  162 (528)
T COG4108         149 --DPLELLDEIEEELG  162 (528)
T ss_pred             --ChHHHHHHHHHHhC
Confidence              23333344444444

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=97.86  E-value=0.0002  Score=69.43  Aligned_cols=152  Identities=13%  Similarity=0.085  Sum_probs=76.4

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceee---eEEEEEEEECCEEEEEEEEeCCCcccccccchhh-----cc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSA---AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMY-----YR  112 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~---~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~-----~~  112 (373)
                      .+.|+|.|.   |||||+|.+.+-...+.   ..|+   +.....+.. .+.-.+.+||.||...-..-...|     +.
T Consensus        35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~  113 (376)
T PF05049_consen   35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY  113 (376)
T ss_dssp             -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence            478999997   99999999976432221   1111   111111111 222247899999964333323333     45


Q ss_pred             CCcEEEEEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCC--C----CCcc
Q psy18160        113 NAQAAIIVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP--T----SRRC  185 (373)
Q Consensus       113 ~ad~iilv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~--~----~~~~  185 (373)
                      ..|.+|++.+-.    |.... .....+.+                        .+.|..+|-+|.|..  .    ..+.
T Consensus       114 ~yD~fiii~s~r----f~~ndv~La~~i~~------------------------~gK~fyfVRTKvD~Dl~~~~~~~p~~  165 (376)
T PF05049_consen  114 RYDFFIIISSER----FTENDVQLAKEIQR------------------------MGKKFYFVRTKVDSDLYNERRRKPRT  165 (376)
T ss_dssp             G-SEEEEEESSS------HHHHHHHHHHHH------------------------TT-EEEEEE--HHHHHHHHHCC-STT
T ss_pred             ccCEEEEEeCCC----CchhhHHHHHHHHH------------------------cCCcEEEEEecccccHhhhhccCCcc
Confidence            789988887742    33332 23344544                        477999999999961  1    0112


Q ss_pred             cCHHH----HHHHHH----HcCC---eEEEEcCCCC--CCHHHHHHHHHHHcchh
Q psy18160        186 VEYSE----GEAYAE----ENGL---LFMETSAKTA--MNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       186 v~~~e----~~~~~~----~~~~---~~~evSak~~--~gI~~lf~~L~~~i~~~  227 (373)
                      -..++    +++-+.    +.|+   ++|-+|+.+-  .+...|.+.|.+.+...
T Consensus       166 f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~  220 (376)
T PF05049_consen  166 FNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH  220 (376)
T ss_dssp             --HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred             cCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence            22222    222222    1233   5899999854  46888989998888754

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd04154 Arl2 Arl2 subfamily

Probab=97.85  E-value=5.9e-06  Score=71.64  Aligned_cols=54  Identities=15%  Similarity=0.268  Sum_probs=42.2

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|++++..+.+ ..+.||+|        ..+  +.+.++  .+.++|||++
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g--------~~~--~~~~~~--~~~l~l~D~~   66 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG--------FQI--KTLEYE--GYKLNIWDVG   66 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc--------cce--EEEEEC--CEEEEEEECC
Confidence            347999999999999999999997744 56889998        222  344445  4789999987

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04157 Arl6 Arl6 subfamily

Probab=97.82  E-value=4.9e-06  Score=70.83  Aligned_cols=52  Identities=13%  Similarity=0.234  Sum_probs=40.6

Q ss_pred             EEEEEccCccccceeeEEeeeCc-ccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQ-FHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~-f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +++++|++++|||+|++++..+. +...|.||+|        ..+.  .  ++...++++|||++
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g--------~~~~--~--~~~~~~~~~l~Dt~   53 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG--------FNVE--S--FEKGNLSFTAFDMS   53 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccc--------cceE--E--EEECCEEEEEEECC
Confidence            47899999999999999999876 5778999999        2221  1  12356889999985

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.79  E-value=0.00014  Score=67.11  Aligned_cols=154  Identities=16%  Similarity=0.144  Sum_probs=93.9

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhC---c-------Cc-----Cc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccc
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINV---V-------FY-----PY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERY  103 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~---~-------~~-----~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~  103 (373)
                      ...++.+..+|-   |||||...++..   .       |.     +.  ..|++.....+++.-.....-..|++|+..|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence            445788888886   999999877632   1       11     11  4444444555555433444567899999877


Q ss_pred             cccchhhccCCcEEEEEEECCCHh---hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC-eEEEEEeCCCC
Q psy18160        104 HTLAPMYYRNAQAAIIVYDITNQD---TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI-VIALAGNKADL  179 (373)
Q Consensus       104 ~~l~~~~~~~ad~iilv~D~~~~~---Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-piilVgnK~Dl  179 (373)
                      -.-.-.-....|+.|||++++|..   +-+++.    ..+.                        -.+ .++++.||+|+
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL----larq------------------------vGvp~ivvflnK~Dm  140 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPMPQTREHIL----LARQ------------------------VGVPYIVVFLNKVDM  140 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh----hhhh------------------------cCCcEEEEEEecccc
Confidence            543223345789999999998843   333332    0111                        234 58888999999


Q ss_pred             CCCCcc--cCHHHHHHHHHHcCC-----eEEEEcCCCCC--------CHHHHHHHHHHHcc
Q psy18160        180 PTSRRC--VEYSEGEAYAEENGL-----LFMETSAKTAM--------NVNEIFVEIAKKLP  225 (373)
Q Consensus       180 ~~~~~~--v~~~e~~~~~~~~~~-----~~~evSak~~~--------gI~~lf~~L~~~i~  225 (373)
                      .++...  .-..|..++...+++     |++.-||...-        .|.+|++.+.+.+.
T Consensus       141 vdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip  201 (394)
T COG0050         141 VDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP  201 (394)
T ss_pred             cCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence            874221  123356677778875     46666665322        35666666666554

>KOG1424|consensus

Probab=97.79  E-value=3.9e-05  Score=75.67  Aligned_cols=71  Identities=24%  Similarity=0.255  Sum_probs=49.9

Q ss_pred             ccCCcEEEEEEECCCHhhHH--HHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160        111 YRNAQAAIIVYDITNQDTFG--RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY  188 (373)
Q Consensus       111 ~~~ad~iilv~D~~~~~Sf~--~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~  188 (373)
                      +..+|++|.++|+.++-=|.  ++.+|..++.                         +....+|+.||+||...   ...
T Consensus       172 lErSDivvqIVDARnPllfr~~dLe~Yvke~d-------------------------~~K~~~LLvNKaDLl~~---~qr  223 (562)
T KOG1424|consen  172 LERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-------------------------PSKANVLLVNKADLLPP---EQR  223 (562)
T ss_pred             HhhcceEEEEeecCCccccCChhHHHHHhccc-------------------------cccceEEEEehhhcCCH---HHH
Confidence            56899999999999986443  4445544432                         34568999999999653   122


Q ss_pred             HHHHHHHHHcCCeEEEEcCCC
Q psy18160        189 SEGEAYAEENGLLFMETSAKT  209 (373)
Q Consensus       189 ~e~~~~~~~~~~~~~evSak~  209 (373)
                      ....++....+++++.-||..
T Consensus       224 ~aWa~YF~~~ni~~vf~SA~~  244 (562)
T KOG1424|consen  224 VAWAEYFRQNNIPVVFFSALA  244 (562)
T ss_pred             HHHHHHHHhcCceEEEEeccc
Confidence            234455667789999999986

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.78  E-value=0.00023  Score=68.02  Aligned_cols=158  Identities=15%  Similarity=0.098  Sum_probs=93.9

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-----------------ceeeeEEEEEEEECCEE--------------
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY-----------------LFSAAFITQTVCLDDVT--------------   89 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----------------Tig~~~~~~~i~~~~~~--------------   89 (373)
                      ....+.+.+.|-   |||||+-.+..+..++.                 ....+.....+-+++..              
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            445677777776   99999988877655443                 11112222333332211              


Q ss_pred             -------EEEEEEeCCCcccccc--cchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhh
Q psy18160         90 -------IRFEIWDTAGQERYHT--LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKEL  160 (373)
Q Consensus        90 -------v~l~i~Dt~G~e~~~~--l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~  160 (373)
                             -.+.+.||.|+|+|-.  ++-..-...|..++++.+++..+-.. ++-+-.+                     
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~---------------------  251 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIA---------------------  251 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhh---------------------
Confidence                   2467899999998854  23333457899999999988654211 1111111                     


Q ss_pred             hhcCCCCCeEEEEEeCCCCCCCCcc-cCHHHHHHHHH----------------------HcC---CeEEEEcCCCCCCHH
Q psy18160        161 QRMAPPNIVIALAGNKADLPTSRRC-VEYSEGEAYAE----------------------ENG---LLFMETSAKTAMNVN  214 (373)
Q Consensus       161 ~~~~~~~~piilVgnK~Dl~~~~~~-v~~~e~~~~~~----------------------~~~---~~~~evSak~~~gI~  214 (373)
                         ..-..|+++|.+|+|+.++.+. -..+++.++.+                      +.+   .|+|.+|+.+|+|++
T Consensus       252 ---~a~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld  328 (527)
T COG5258         252 ---LAMELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD  328 (527)
T ss_pred             ---hhhcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH
Confidence               2247899999999999765221 11122222211                      111   489999999999986


Q ss_pred             HHHHHHHHHcchh
Q psy18160        215 EIFVEIAKKLPKK  227 (373)
Q Consensus       215 ~lf~~L~~~i~~~  227 (373)
                      -|. ++...++.+
T Consensus       329 lL~-e~f~~Lp~r  340 (527)
T COG5258         329 LLD-EFFLLLPKR  340 (527)
T ss_pred             HHH-HHHHhCCcc
Confidence            554 444455544

>KOG1486|consensus

Probab=97.77  E-value=0.0034  Score=56.96  Aligned_cols=197  Identities=14%  Similarity=0.110  Sum_probs=117.1

Q ss_pred             hhhhhhhhhhhccCCCCccccccCC----CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECC
Q psy18160         18 ALTVRVLKLKTQIPKGNWFSMMSGK----RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDD   87 (373)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~   87 (373)
                      +|+....++|+|+-.....+-.++.    .++..-+++++|=   |||||+..++...-...   -...+...-.++++|
T Consensus        29 lLKaKlAkyR~qLlep~~~s~~kg~GFeV~KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g  108 (364)
T KOG1486|consen   29 LLKAKLAKYRQQLLEPTKGSSGKGEGFEVLKSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG  108 (364)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCCCeeeeccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC
Confidence            5667777888887554433332221    2445567888885   99999999986543322   111123344566776


Q ss_pred             EEEEEEEEeCCCccccccc-------chhhccCCcEEEEEEECCCHhhHHHH-HHHHHHHHhh---CCCCC---------
Q psy18160         88 VTIRFEIWDTAGQERYHTL-------APMYYRNAQAAIIVYDITNQDTFGRA-KSWVKELQRM---APPNI---------  147 (373)
Q Consensus        88 ~~v~l~i~Dt~G~e~~~~l-------~~~~~~~ad~iilv~D~~~~~Sf~~i-~~~l~~i~~~---~~~~~---------  147 (373)
                      -  .+++.|.||.-+-.+.       .-...+.||.++.|.|.+..+.-..+ ++-++.+--.   ..+++         
T Consensus       109 a--~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gG  186 (364)
T KOG1486|consen  109 A--NIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGG  186 (364)
T ss_pred             c--eEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCC
Confidence            4  5789999985332221       12346789999999999876543322 2222322110   11111         


Q ss_pred             ---------------------------------CcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH
Q psy18160        148 ---------------------------------DTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY  194 (373)
Q Consensus       148 ---------------------------------~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~  194 (373)
                                                       ..-.....+++-+. -...-++++-|-||+|.      ++.++..++
T Consensus       187 i~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ReD~t~DdfIDvi~-gnr~Y~~ClYvYnKID~------vs~eevdrl  259 (364)
T KOG1486|consen  187 ISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFREDCTVDDFIDVIE-GNRVYIKCLYVYNKIDQ------VSIEEVDRL  259 (364)
T ss_pred             eEEeeeeccccccHHHHHHHHHHHeeccceEEEecCCChHHHHHHHh-ccceEEEEEEEeeccce------ecHHHHHHH
Confidence                                             00011112222221 12224788999999995      678899999


Q ss_pred             HHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       195 ~~~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      |+..+-  +-+|+.-..|++.+++.+-+.+.
T Consensus       260 Ar~Pns--vViSC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  260 ARQPNS--VVISCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             hcCCCc--EEEEeccccCHHHHHHHHHHHhc
Confidence            987663  44688888899999998877764

>cd04159 Arl10_like Arl10-like subfamily

Probab=97.76  E-value=9.8e-06  Score=68.15  Aligned_cols=51  Identities=27%  Similarity=0.352  Sum_probs=41.9

Q ss_pred             EEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        300 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       300 ~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ++++|++|+|||+|++++...+|...+.||+|        .++.  .+..++  +.+.+||++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~--------~~~~--~~~~~~--~~~~~~D~~   52 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVG--------FNMR--KVTKGN--VTLKVWDLG   52 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCC--------cceE--EEEECC--EEEEEEECC
Confidence            68999999999999999999999999999999        4442  222333  789999985

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=97.76  E-value=6.8e-06  Score=70.99  Aligned_cols=51  Identities=16%  Similarity=0.191  Sum_probs=40.3

Q ss_pred             EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +++++|.+++|||+|++++..+ |...|.||+|        ...  +.+..  ..++++|||++
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g--------~~~--~~~~~--~~~~~~i~D~~   51 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVG--------FTP--TKLRL--DKYEVCIFDLG   51 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCccc--------ceE--EEEEE--CCEEEEEEECC
Confidence            3689999999999999999866 8889999999        321  23333  45889999986

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>KOG1954|consensus

Probab=97.74  E-value=0.00024  Score=67.49  Aligned_cols=116  Identities=12%  Similarity=0.086  Sum_probs=72.7

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCccee----eeEEEEEEEE------CCEE--------------------
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPYLFS----AAFITQTVCL------DDVT--------------------   89 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~Tig----~~~~~~~i~~------~~~~--------------------   89 (373)
                      .-.....++++|.   ||||+++.+++.+|..-.+|    .++....+.-      +|..                    
T Consensus        54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl  133 (532)
T KOG1954|consen   54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL  133 (532)
T ss_pred             ccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence            3345567888887   99999999999988755222    2332222221      1111                    


Q ss_pred             -------------EEEEEEeCCCcc-----------cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCC
Q psy18160         90 -------------IRFEIWDTAGQE-----------RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPP  145 (373)
Q Consensus        90 -------------v~l~i~Dt~G~e-----------~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~  145 (373)
                                   -.+.|+||+|.-           .|.....-|...+|.|+++||.-..+--++..+.+..++.    
T Consensus       134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----  209 (532)
T KOG1954|consen  134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----  209 (532)
T ss_pred             HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----
Confidence                         147789999942           2333455577899999999997654433344444444433    


Q ss_pred             CCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160        146 NIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  182 (373)
                                          ..-.+-||.||+|..+.
T Consensus       210 --------------------~EdkiRVVLNKADqVdt  226 (532)
T KOG1954|consen  210 --------------------HEDKIRVVLNKADQVDT  226 (532)
T ss_pred             --------------------CcceeEEEeccccccCH
Confidence                                34467889999997553

>KOG1143|consensus

Probab=97.74  E-value=0.00021  Score=67.96  Aligned_cols=149  Identities=13%  Similarity=0.046  Sum_probs=92.3

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--------------------------ceeeeEEEEEEEECC-------
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY--------------------------LFSAAFITQTVCLDD-------   87 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--------------------------Tig~~~~~~~i~~~~-------   87 (373)
                      +.-.++++++|+   |||||+--+..++.+..                          ++|.+-..+.+.+..       
T Consensus       164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi  243 (591)
T KOG1143|consen  164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI  243 (591)
T ss_pred             cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence            344578999999   99999987776654332                          444443334443322       


Q ss_pred             ---EEEEEEEEeCCCcccccccchhhcc--CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhh
Q psy18160         88 ---VTIRFEIWDTAGQERYHTLAPMYYR--NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQR  162 (373)
Q Consensus        88 ---~~v~l~i~Dt~G~e~~~~l~~~~~~--~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                         ..-.+.++|.+|+.+|....-.-+.  ..|.+++|+++...-... -++-+..+..                     
T Consensus       244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A---------------------  301 (591)
T KOG1143|consen  244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA---------------------  301 (591)
T ss_pred             HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH---------------------
Confidence               1235789999999988765433333  368889999886543211 1112222222                     


Q ss_pred             cCCCCCeEEEEEeCCCCCCCC-----------------------cccCHHHHHHHHHHc----CCeEEEEcCCCCCCHHH
Q psy18160        163 MAPPNIVIALAGNKADLPTSR-----------------------RCVEYSEGEAYAEEN----GLLFMETSAKTAMNVNE  215 (373)
Q Consensus       163 ~~~~~~piilVgnK~Dl~~~~-----------------------~~v~~~e~~~~~~~~----~~~~~evSak~~~gI~~  215 (373)
                         -++|.+++.+|.|+.+.+                       +.-+.+++...+.+.    =.|+|.+|+.+|++++-
T Consensus       302 ---L~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l  378 (591)
T KOG1143|consen  302 ---LNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL  378 (591)
T ss_pred             ---hCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH
Confidence               478999999999997641                       112233343333332    24799999999999765


Q ss_pred             HH
Q psy18160        216 IF  217 (373)
Q Consensus       216 lf  217 (373)
                      +-
T Consensus       379 l~  380 (591)
T KOG1143|consen  379 LR  380 (591)
T ss_pred             HH
Confidence            43

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.72  E-value=1.1e-05  Score=65.20  Aligned_cols=56  Identities=30%  Similarity=0.408  Sum_probs=40.8

Q ss_pred             EEEEEccCccccceeeEEeeeCccc--ccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFH--EYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~--~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      |++++|+.|+|||+|+.+++.+.+.  ..+.++-+        ..+......+++....+.|||++
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~d~~   58 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSE--------ITIGVDVIVVDGDRQSLQFWDFG   58 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTT--------SCEEEEEEEETTEEEEEEEEEES
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCC--------CcEEEEEEEecCCceEEEEEecC
Confidence            6899999999999999999998887  23444444        34444566778888889999987

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.71  E-value=1.9e-05  Score=67.69  Aligned_cols=33  Identities=24%  Similarity=0.103  Sum_probs=27.6

Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q psy18160        189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIA  221 (373)
Q Consensus       189 ~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~  221 (373)
                      ++..+..+..|++++.+|++++++++++.+.+.
T Consensus         2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~   34 (161)
T PF03193_consen    2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLK   34 (161)
T ss_dssp             HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHT
T ss_pred             HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhc
Confidence            456677889999999999999999999988764

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd04151 Arl1 Arl1 subfamily

Probab=97.69  E-value=1e-05  Score=68.89  Aligned_cols=51  Identities=22%  Similarity=0.344  Sum_probs=40.2

Q ss_pred             EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      |++++|++++|||+|++++..+.+.. +.||+|        .++.  .+  +...++++|||++
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~--------~~~~--~~--~~~~~~~~i~Dt~   51 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIG--------FNVE--TV--TYKNLKFQVWDLG   51 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccC--------cCeE--EE--EECCEEEEEEECC
Confidence            57899999999999999998888764 678998        3332  22  3356889999987

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=97.69  E-value=0.00095  Score=62.79  Aligned_cols=134  Identities=13%  Similarity=0.072  Sum_probs=69.1

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc-------------ceeeeEEEEEEEECCEEEEEEEEeCCCccc--------
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY-------------LFSAAFITQTVCLDDVTIRFEIWDTAGQER--------  102 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~-------------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~--------  102 (373)
                      .+.++|+|.   |||||+|.|++......             +.........+.-++..+.+.++||+|-..        
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            367888897   99999999998643332             233333334445578899999999999321        


Q ss_pred             ----------cccc-------chhhc--cCCcEEEEEEECCCH-hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhh
Q psy18160        103 ----------YHTL-------APMYY--RNAQAAIIVYDITNQ-DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQR  162 (373)
Q Consensus       103 ----------~~~l-------~~~~~--~~ad~iilv~D~~~~-~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                                |...       .+.-.  ...|+++++.+.+.. -+-.++ +.+..+.                      
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls----------------------  140 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS----------------------  140 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT----------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc----------------------
Confidence                      1000       00001  246899999998652 222233 2333333                      


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCcc-cCHHHHHHHHHHcCCeEEEEc
Q psy18160        163 MAPPNIVIALAGNKADLPTSRRC-VEYSEGEAYAEENGLLFMETS  206 (373)
Q Consensus       163 ~~~~~~piilVgnK~Dl~~~~~~-v~~~e~~~~~~~~~~~~~evS  206 (373)
                         ..+++|=|..|+|....... .-.+.+.+-.+.+++++|...
T Consensus       141 ---~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f~  182 (281)
T PF00735_consen  141 ---KRVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDFP  182 (281)
T ss_dssp             ---TTSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S----
T ss_pred             ---ccccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeeccc
Confidence               35778889999997542100 001112333455677766543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd01850 CDC_Septin CDC/Septin

Probab=97.68  E-value=2.3e-05  Score=73.59  Aligned_cols=59  Identities=19%  Similarity=0.291  Sum_probs=48.2

Q ss_pred             cceEEEEEccCccccceeeEEeeeCccccc----------ccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEY----------QESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~----------~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..++++++|++|+|||||+++++...+...          +.+|++        ++.....+..+|.+++|.|||++
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~--------i~~~~~~i~~~g~~~~l~iiDTp   71 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVE--------IKSSKAEIEENGVKLKLTVIDTP   71 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceE--------EEEEEEEEEECCEEEEEEEEecC
Confidence            468999999999999999999998876543          466776        56655666678999999999985

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01900 YchF YchF subfamily

Probab=97.67  E-value=0.00026  Score=66.19  Aligned_cols=72  Identities=14%  Similarity=0.010  Sum_probs=46.6

Q ss_pred             EEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCE---------------EEEEEEEeCCCccccc---
Q psy18160         51 IWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDV---------------TIRFEIWDTAGQERYH---  104 (373)
Q Consensus        51 vvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~---------------~v~l~i~Dt~G~e~~~---  104 (373)
                      .++|-   |||||+|++++......     |+....  ..+.+.+.               ...++++|+||..+-.   
T Consensus         2 givG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~--g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~   79 (274)
T cd01900           2 GIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV--GIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG   79 (274)
T ss_pred             eEeCCCCCcHHHHHHHHhCCCCccccccccchhcee--eeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence            56665   99999999999876432     444332  33344432               2358999999964321   


Q ss_pred             -ccchhh---ccCCcEEEEEEECC
Q psy18160        105 -TLAPMY---YRNAQAAIIVYDIT  124 (373)
Q Consensus       105 -~l~~~~---~~~ad~iilv~D~~  124 (373)
                       .+...+   ++.+|++++|+|..
T Consensus        80 ~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          80 EGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             hHHHHHHHHHHHhCCEEEEEEeCc
Confidence             222233   57899999999873

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=97.64  E-value=2e-05  Score=68.51  Aligned_cols=54  Identities=20%  Similarity=0.373  Sum_probs=42.7

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      .+|++++|.+++|||+|++++..+.|.. +.||+|.+        +.  .+.++  .+.+.|||++-
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~--------~~--~~~~~--~~~~~l~D~~G   68 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSN--------VE--EIVYK--NIRFLMWDIGG   68 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccc--------eE--EEEEC--CeEEEEEECCC
Confidence            4799999999999999999999998886 68999933        32  22233  58899999863

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=97.59  E-value=2e-05  Score=67.00  Aligned_cols=52  Identities=21%  Similarity=0.337  Sum_probs=40.8

Q ss_pred             EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +++++|++++|||+|+++|..+.|.. +.||+|        .++  +.+.+ +..+.|.|||++
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~--------~~~--~~~~~-~~~~~l~i~D~~   52 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVG--------FNV--EMLQL-EKHLSLTVWDVG   52 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccC--------cce--EEEEe-CCceEEEEEECC
Confidence            47899999999999999999998875 468998        333  23333 356899999986

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG0467|consensus

Probab=97.58  E-value=0.00023  Score=73.07  Aligned_cols=77  Identities=10%  Similarity=0.151  Sum_probs=57.4

Q ss_pred             EEEcC-ChhHHHHHhhhCc------------CcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhcc
Q psy18160         51 IWLKD-RVDCMTQIVINVV------------FYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYR  112 (373)
Q Consensus        51 vvlG~-GKTsLl~rl~~~~------------~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~  112 (373)
                      +.-.+ |||||...++-..            |.+.     |.|.+...-.+..-.+.+.+.++|+||+-.|.+......+
T Consensus        15 vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~   94 (887)
T KOG0467|consen   15 VAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASR   94 (887)
T ss_pred             EEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhh
Confidence            33334 9999998886432            2222     6666555555555456788999999999999999999999


Q ss_pred             CCcEEEEEEECCCHh
Q psy18160        113 NAQAAIIVYDITNQD  127 (373)
Q Consensus       113 ~ad~iilv~D~~~~~  127 (373)
                      =+|++++++|+...-
T Consensus        95 l~d~alvlvdvvegv  109 (887)
T KOG0467|consen   95 LSDGALVLVDVVEGV  109 (887)
T ss_pred             hcCCcEEEEeecccc
Confidence            999999999997643

>cd00879 Sar1 Sar1 subfamily

Probab=97.58  E-value=2.6e-05  Score=68.55  Aligned_cols=53  Identities=15%  Similarity=0.147  Sum_probs=42.0

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..|++++|++++|||+|++++..+.+. .|.||++        ..  ...+.+++  +.+++||++
T Consensus        19 ~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~--------~~--~~~i~~~~--~~~~l~D~~   71 (190)
T cd00879          19 EAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLH--------PT--SEELTIGN--IKFKTFDLG   71 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccC--------cc--eEEEEECC--EEEEEEECC
Confidence            478999999999999999999988874 6889988        22  23445565  678899984

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=97.48  E-value=0.0029  Score=60.79  Aligned_cols=162  Identities=12%  Similarity=0.028  Sum_probs=92.7

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEE----------C-C---EEEEEEEEeCCCcc----
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCL----------D-D---VTIRFEIWDTAGQE----  101 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~----------~-~---~~v~l~i~Dt~G~e----  101 (373)
                      +++.++|=   |||||+|.++...-...     ||........+..          . +   ....++++|++|.-    
T Consensus         3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs   82 (372)
T COG0012           3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS   82 (372)
T ss_pred             ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence            46677775   99999999998873322     6666554333221          1 1   24578999998853    


Q ss_pred             cccccchhh---ccCCcEEEEEEECCCH-------------hh------------HHHHHH-HHHHHHhhCCCC---C--
Q psy18160        102 RYHTLAPMY---YRNAQAAIIVYDITNQ-------------DT------------FGRAKS-WVKELQRMAPPN---I--  147 (373)
Q Consensus       102 ~~~~l~~~~---~~~ad~iilv~D~~~~-------------~S------------f~~i~~-~l~~i~~~~~~~---~--  147 (373)
                      +-..+...|   +|.+|+++.|+|..+.             ..            ++.+++ |-...++.....   .  
T Consensus        83 ~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~~~~k~~  162 (372)
T COG0012          83 KGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLDKEL  162 (372)
T ss_pred             cCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence            334455555   6789999999997631             01            111111 111111111110   0  


Q ss_pred             ------------------Cccc-ccchhHHh----hh-hcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEE
Q psy18160        148 ------------------DTFG-RAKSWVKE----LQ-RMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFM  203 (373)
Q Consensus       148 ------------------~~~~-~~~~~~~~----~~-~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~  203 (373)
                                        +... ....|..+    +. -......|+++++||.|........-.+...+++...+.+++
T Consensus       163 ~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV  242 (372)
T COG0012         163 KEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVV  242 (372)
T ss_pred             HHHHHHHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEE
Confidence                              1110 22234433    22 123356899999999998654111115567778888888999


Q ss_pred             EEcCCC
Q psy18160        204 ETSAKT  209 (373)
Q Consensus       204 evSak~  209 (373)
                      .+||+-
T Consensus       243 ~~sA~~  248 (372)
T COG0012         243 PVSAAI  248 (372)
T ss_pred             EeeHHH
Confidence            999873

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.47  E-value=0.00086  Score=62.91  Aligned_cols=55  Identities=16%  Similarity=0.085  Sum_probs=39.9

Q ss_pred             CeEEEEEeCCCCCCCCcccCHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        168 IVIALAGNKADLPTSRRCVEYSEGEAYAEEN--GLLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       168 ~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~--~~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                      .+-++|.||+|+.+. .....++..+..+..  ..+++++||++|+|++++.++|..+
T Consensus       231 ~ADIVVLNKiDLl~~-~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPY-LNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcc-cHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            456899999999652 112344444444443  4789999999999999999999763

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=97.46  E-value=2.6e-05  Score=69.07  Aligned_cols=56  Identities=21%  Similarity=0.340  Sum_probs=44.7

Q ss_pred             EEEEEccCccccceeeEEeee--Ccccccc------------cCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVR--GQFHEYQ------------ESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~--~~f~~~~------------~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +++++|.+++|||+|+++|+.  +.|...+            .++.|        .++..+.+.++...+.++|||++
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g--------~t~~~~~~~~~~~~~~~~l~Dtp   73 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERG--------ITILAKNTAVTYKDTKINIVDTP   73 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcc--------cccccceeEEEECCEEEEEEECC
Confidence            689999999999999999997  6776654            34566        55555666677788999999987

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG0082|consensus

Probab=97.43  E-value=0.00062  Score=65.30  Aligned_cols=132  Identities=17%  Similarity=0.224  Sum_probs=85.7

Q ss_pred             ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhh--HH--------HHHHHHHHHHhh
Q psy18160         73 LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT--FG--------RAKSWVKELQRM  142 (373)
Q Consensus        73 Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~S--f~--------~i~~~l~~i~~~  142 (373)
                      |.|+.  ...+.+.+  ..+.+.|++||-.-+.-|-+++.+++++|||.++++-+.  ++        +..+.++.+.+ 
T Consensus       182 T~GI~--e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n-  256 (354)
T KOG0082|consen  182 TTGIV--EVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN-  256 (354)
T ss_pred             cCCee--EEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc-
Confidence            55543  33444544  678899999997777778889999999999999986331  11        11223333333 


Q ss_pred             CCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC--------------cccCHHHHHHHHHH-----c-----
Q psy18160        143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR--------------RCVEYSEGEAYAEE-----N-----  198 (373)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~--------------~~v~~~e~~~~~~~-----~-----  198 (373)
                                         ...-.+.++||..||.||-.+.              ..-..+++..+.+.     +     
T Consensus       257 -------------------~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k  317 (354)
T KOG0082|consen  257 -------------------NKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDK  317 (354)
T ss_pred             -------------------CcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCC
Confidence                               1233578999999999985431              11234444433221     1     


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      .+-+..+.|.+-.+|+.+|..+...+....
T Consensus       318 ~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n  347 (354)
T KOG0082|consen  318 KIYVHFTCATDTQNVQFVFDAVTDTIIQNN  347 (354)
T ss_pred             cceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence            123566788888999999999988876543

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=97.42  E-value=6e-05  Score=66.20  Aligned_cols=53  Identities=17%  Similarity=0.148  Sum_probs=40.6

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|.+++|||+|++++..+.|. .+.||++.        ..  ..+.++  .+++.+||++
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~--------~~--~~~~~~--~~~~~~~D~~   69 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHP--------TS--EELAIG--NIKFTTFDLG   69 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCcccc--------ce--EEEEEC--CEEEEEEECC
Confidence            479999999999999999999988775 46788872        11  233344  3778899986

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG2486|consensus

Probab=97.38  E-value=0.00014  Score=66.77  Aligned_cols=150  Identities=9%  Similarity=0.052  Sum_probs=87.7

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCc----------ccccc
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQ----------ERYHT  105 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~----------e~~~~  105 (373)
                      +..+.+.++++|+   |||||+|-++..+-...    +.|.+.......++.   .+.+.|.+|-          +.+..
T Consensus       132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~  208 (320)
T KOG2486|consen  132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDK  208 (320)
T ss_pred             CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhH
Confidence            3456689999998   99999999987654433    344333233333333   4567899882          34445


Q ss_pred             cchhhccC---CcEEEEEEECCCHhh-HH-HHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCC
Q psy18160        106 LAPMYYRN---AQAAIIVYDITNQDT-FG-RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP  180 (373)
Q Consensus       106 l~~~~~~~---ad~iilv~D~~~~~S-f~-~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~  180 (373)
                      +...|+.+   --.++++.|++-+-. -+ ...+|+.                           ..++|+.+|.||+|..
T Consensus       209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g---------------------------e~~VP~t~vfTK~DK~  261 (320)
T KOG2486|consen  209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLG---------------------------ENNVPMTSVFTKCDKQ  261 (320)
T ss_pred             hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHh---------------------------hcCCCeEEeeehhhhh
Confidence            55566543   334555566554321 11 1123322                           2588999999999974


Q ss_pred             CCCc---ccCHHHHHH----HH---HHcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        181 TSRR---CVEYSEGEA----YA---EENGLLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       181 ~~~~---~v~~~e~~~----~~---~~~~~~~~evSak~~~gI~~lf~~L~~  222 (373)
                      ....   .-....+..    +.   .....|++.+|+.++.|+++|...++.
T Consensus       262 k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  262 KKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             hhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence            3211   001111111    11   112357888999999999998876654

>cd01890 LepA LepA subfamily

Probab=97.37  E-value=5.5e-05  Score=65.63  Aligned_cols=62  Identities=15%  Similarity=0.148  Sum_probs=42.7

Q ss_pred             EEEEEccCccccceeeEEeeeC-------cccccccCCccccccccceeeeecceeee-----CCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRG-------QFHEYQESTIGGECQSSHSISFSMPTKNR-----LNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~-------~f~~~~~~Tig~~~~~~~~~~~~~~~~~v-----~~~~~~l~iw~~~  362 (373)
                      +++++|++++|||||+++|+..       .|...|.+|++.+-...  +++..+.+.+     ++..+.++|||++
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g--~t~~~~~~~~~~~~~~~~~~~~~l~Dt~   75 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERG--ITIKAQTVRLNYKAKDGQEYLLNLIDTP   75 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCC--CeEecceEEEEEecCCCCcEEEEEEECC
Confidence            4789999999999999999863       35556666654221111  3444344333     7889999999986

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=97.36  E-value=6.2e-05  Score=63.85  Aligned_cols=51  Identities=25%  Similarity=0.356  Sum_probs=39.4

Q ss_pred             EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      |++++|.+++|||+|+++++.+.+ ..+.+|+|        ...  ..+.++  .+.+.|||+.
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~--------~~~--~~~~~~--~~~~~i~D~~   51 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIG--------FNV--ETVEYK--NVSFTVWDVG   51 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcC--------cce--EEEEEC--CEEEEEEECC
Confidence            689999999999999999998874 56788998        332  223333  5789999975

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PRK04213 GTP-binding protein; Provisional

Probab=97.35  E-value=7.7e-05  Score=66.25  Aligned_cols=54  Identities=17%  Similarity=0.112  Sum_probs=39.8

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      ..++++++|.+++|||||++++.++.|...+.|++.          +....+.++    .+.|||++-
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t----------~~~~~~~~~----~~~l~Dt~G   61 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT----------RKPNHYDWG----DFILTDLPG   61 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee----------eCceEEeec----ceEEEeCCc
Confidence            347899999999999999999998888766666443          222233333    589999874

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=97.35  E-value=5.8e-05  Score=64.61  Aligned_cols=52  Identities=17%  Similarity=0.196  Sum_probs=38.2

Q ss_pred             EEEEEccCccccceeeEEeeeC------cccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRG------QFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~------~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +++++|++++|||+|++++...      .+...+.||++        .++.  .+..+  ...+.|||++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~--------~~~~--~~~~~--~~~~~l~Dt~   58 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVG--------LNIG--TIEVG--NARLKFWDLG   58 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccc--------cceE--EEEEC--CEEEEEEECC
Confidence            4789999999999999998653      23456789999        4442  23333  5788999976

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=97.35  E-value=3.6e-05  Score=64.21  Aligned_cols=31  Identities=16%  Similarity=0.377  Sum_probs=28.2

Q ss_pred             EEEEEccCccccceeeEEeeeCcccccccCCcc
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG  331 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig  331 (373)
                      |++++|++++|||+|+++|.++.+  .|.+|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~   32 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQA   32 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc--cccccee
Confidence            789999999999999999998876  4778998

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=97.34  E-value=0.0011  Score=68.11  Aligned_cols=115  Identities=8%  Similarity=0.072  Sum_probs=66.6

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeE-EEEEEEECCEEEEEEEEeCCCcccccc-------c---ch
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAF-ITQTVCLDDVTIRFEIWDTAGQERYHT-------L---AP  108 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~-~~~~i~~~~~~v~l~i~Dt~G~e~~~~-------l---~~  108 (373)
                      ..++++++|.   ||||++|.+++......   ..+... ......+++  ..+.++||+|......       +   ..
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik  194 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK  194 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence            4477889986   99999999999764332   112111 111223444  4588999999754321       1   12


Q ss_pred             hhcc--CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160        109 MYYR--NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT  181 (373)
Q Consensus       109 ~~~~--~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  181 (373)
                      .+++  .+|++|+|..++......+-..+++.+.......                   --..+|||.|..|...
T Consensus       195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~-------------------Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS-------------------IWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH-------------------hHcCEEEEEeCCccCC
Confidence            2333  5899999998864333212224455554421110                   0124889999999864

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.30  E-value=0.00043  Score=58.08  Aligned_cols=49  Identities=10%  Similarity=-0.006  Sum_probs=37.6

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCc
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQ  100 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~  100 (373)
                      +++++|.   |||||+|++.+.+....  +.|.+.....+.+++   .+.||||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            6778886   99999999998877544  555555566666665   4789999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG2484|consensus

Probab=97.29  E-value=0.00023  Score=68.34  Aligned_cols=56  Identities=20%  Similarity=0.108  Sum_probs=39.4

Q ss_pred             ccccccchhhccCCcEEEEEEECCCHhhH--HHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCC
Q psy18160        101 ERYHTLAPMYYRNAQAAIIVYDITNQDTF--GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD  178 (373)
Q Consensus       101 e~~~~l~~~~~~~ad~iilv~D~~~~~Sf--~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~D  178 (373)
                      ..|.......+..+|+||-|.|+.||.+-  .++++|+..                         ...+...|+|.||.|
T Consensus       134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~-------------------------~~gnKkLILVLNK~D  188 (435)
T KOG2484|consen  134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQ-------------------------AHGNKKLILVLNKID  188 (435)
T ss_pred             HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHh-------------------------ccCCceEEEEeehhc
Confidence            34444555567789999999999998753  344554322                         124578999999999


Q ss_pred             CCC
Q psy18160        179 LPT  181 (373)
Q Consensus       179 l~~  181 (373)
                      |..
T Consensus       189 LVP  191 (435)
T KOG2484|consen  189 LVP  191 (435)
T ss_pred             cCC
Confidence            954

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=97.27  E-value=0.0001  Score=64.34  Aligned_cols=58  Identities=22%  Similarity=0.135  Sum_probs=41.8

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      ....+++++|.+++|||||+++++...|...+.++.|.++.    .++    +.+++   .+.|||+.-
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~----~~~----~~~~~---~~~liDtpG   73 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQL----INF----FEVND---GFRLVDLPG   73 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceE----EEE----EEeCC---cEEEEeCCC
Confidence            34578999999999999999999988777777777773222    121    22233   588898864

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=97.25  E-value=0.00011  Score=64.80  Aligned_cols=57  Identities=25%  Similarity=0.190  Sum_probs=42.7

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      ...+++++|.+++|||||+++++.+.|...+.++.|.+..    +.+.    .+   ...+.|||+.-
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~----~~~~----~~---~~~l~l~DtpG   79 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQL----INFF----EV---NDKLRLVDLPG   79 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeE----EEEE----ec---CCeEEEeCCCC
Confidence            3478999999999999999999988888888888883322    2221    11   36788999864

>KOG1547|consensus

Probab=97.24  E-value=0.003  Score=56.90  Aligned_cols=53  Identities=11%  Similarity=0.120  Sum_probs=40.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc------------ceeeeEEEEEEEECCEEEEEEEEeCCCc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY------------LFSAAFITQTVCLDDVTIRFEIWDTAGQ  100 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~------------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~  100 (373)
                      +.|+|+|+   |||||+|.+........            |+........++-++...++.+.||+|-
T Consensus        47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGf  114 (336)
T KOG1547|consen   47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGF  114 (336)
T ss_pred             eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence            57888887   99999999986654332            5555555666666888889999999994

>KOG0073|consensus

Probab=97.23  E-value=0.00016  Score=61.05  Aligned_cols=55  Identities=20%  Similarity=0.337  Sum_probs=44.0

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhh
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWV  361 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~  361 (373)
                      +...+++.++|..|+|||+++.+|.+.. .+.-.||.|          |..+++..++  .+|+|||+
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g----------f~Iktl~~~~--~~L~iwDv   67 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG----------FQIKTLEYKG--YTLNIWDV   67 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc----------eeeEEEEecc--eEEEEEEc
Confidence            4457999999999999999999998665 666789999          5556666554  57888987

>cd04155 Arl3 Arl3 subfamily

Probab=97.22  E-value=0.00015  Score=62.52  Aligned_cols=54  Identities=13%  Similarity=0.190  Sum_probs=41.0

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++|+|||+|++++....+. .+.||.|        .++  ..+..++  ..+.+||++
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g--------~~~--~~i~~~~--~~~~~~D~~   66 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDIS-HITPTQG--------FNI--KTVQSDG--FKLNVWDIG   66 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCC--------cce--EEEEECC--EEEEEEECC
Confidence            3589999999999999999999987664 4788998        333  2344454  567889865

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04171 SelB SelB subfamily

Probab=97.20  E-value=0.00011  Score=62.38  Aligned_cols=55  Identities=16%  Similarity=0.198  Sum_probs=36.7

Q ss_pred             EEEEEccCccccceeeEEeee---CcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVR---GQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~---~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      -++++|++++|||+|++++..   +.|...+.+++.        ++.....+..++ ...++|||++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t--------~~~~~~~~~~~~-~~~~~~~Dtp   59 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGIT--------IDLGFAYLDLPS-GKRLGFIDVP   59 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCce--------EEeeeEEEEecC-CcEEEEEECC
Confidence            368999999999999999985   455555544443        222223344442 3578999987

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01859 MJ1464 MJ1464

Probab=97.14  E-value=0.0023  Score=54.42  Aligned_cols=51  Identities=10%  Similarity=-0.143  Sum_probs=35.4

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQ  100 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~  100 (373)
                      ..+++++|.   |||||+|++.+......  +.|.+...+.+..++   .+.+|||||.
T Consensus       101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi  156 (156)
T cd01859         101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPGV  156 (156)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence            356788886   99999999997664443  666554433333433   5889999983

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.13  E-value=0.00012  Score=63.74  Aligned_cols=55  Identities=24%  Similarity=0.314  Sum_probs=41.9

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|..++|||++++++..+.+.. +.||+|        .+.  ..+..++  +.+.|||+.
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--------~~~--~~i~~~~--~~~~~~d~g   66 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--------FNI--EEIKYKG--YSLTIWDLG   66 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--------EEE--EEEEETT--EEEEEEEES
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--------ccc--ceeeeCc--EEEEEEecc
Confidence            356899999999999999999998776654 889999        333  3444444  567889874

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG2423|consensus

Probab=97.11  E-value=0.0016  Score=62.50  Aligned_cols=86  Identities=13%  Similarity=0.177  Sum_probs=54.9

Q ss_pred             ccCCcEEEEEEECCCHhh--HHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160        111 YRNAQAAIIVYDITNQDT--FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY  188 (373)
Q Consensus       111 ~~~ad~iilv~D~~~~~S--f~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~  188 (373)
                      +..+|++|-|.|+.|+..  -..+++++.                         ...+...+|+|.||+||...  .++.
T Consensus       211 iDSSDVvvqVlDARDPmGTrc~~ve~ylk-------------------------ke~phKHli~vLNKvDLVPt--wvt~  263 (572)
T KOG2423|consen  211 IDSSDVVVQVLDARDPMGTRCKHVEEYLK-------------------------KEKPHKHLIYVLNKVDLVPT--WVTA  263 (572)
T ss_pred             hcccceeEEeeeccCCcccccHHHHHHHh-------------------------hcCCcceeEEEeeccccccH--HHHH
Confidence            457899999999998752  344554443                         24567889999999999652  2333


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       189 ~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      .=...+.+++..--|..|-.+..|=-.+++ |++++
T Consensus       264 ~Wv~~lSkeyPTiAfHAsi~nsfGKgalI~-llRQf  298 (572)
T KOG2423|consen  264 KWVRHLSKEYPTIAFHASINNSFGKGALIQ-LLRQF  298 (572)
T ss_pred             HHHHHHhhhCcceeeehhhcCccchhHHHH-HHHHH
Confidence            333445555555566777666666544443 33333

>KOG0070|consensus

Probab=97.11  E-value=0.00057  Score=59.02  Aligned_cols=53  Identities=21%  Similarity=0.337  Sum_probs=41.5

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhh
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWV  361 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~  361 (373)
                      .+++++++|--++|||+++.++..+++... .||||.+....++-            ++++++||+
T Consensus        16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~yk------------n~~f~vWDv   68 (181)
T KOG0070|consen   16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYK------------NISFTVWDV   68 (181)
T ss_pred             ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEc------------ceEEEEEec
Confidence            357899999999999999999999999888 89999444433333            566666665

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=97.07  E-value=0.0025  Score=62.81  Aligned_cols=94  Identities=17%  Similarity=0.167  Sum_probs=62.0

Q ss_pred             HHhhhCcCcCc----------ceeeeEEEEEEEE-CCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHh---
Q psy18160         62 QIVINVVFYPY----------LFSAAFITQTVCL-DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD---  127 (373)
Q Consensus        62 ~rl~~~~~~~~----------Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~---  127 (373)
                      .|++...|.+.          |.|+.  ...+.+ ++  ..+.++|++||..-+.-|..++.+++++|||+|+++-.   
T Consensus       201 ~RI~~~~Y~PT~~DIl~~r~~T~Gi~--e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~  276 (389)
T PF00503_consen  201 DRIAQPDYIPTDEDILRCRVKTTGIT--EIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTL  276 (389)
T ss_dssp             HHHHSTTB---HHHHHHS----SSEE--EEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBE
T ss_pred             hhhcCCCccCCCCCeeeecCCCCCee--EEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhh
Confidence            35555666654          66654  344555 44  56889999999888888999999999999999986421   


Q ss_pred             -------hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160        128 -------TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL  179 (373)
Q Consensus       128 -------Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl  179 (373)
                             .+.+....++.+...                    ..-.+.|++|+.||.|+
T Consensus       277 ~ed~~~nrl~esl~lF~~i~~~--------------------~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  277 YEDPNTNRLHESLNLFESICNN--------------------PWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             SSSTTSBHHHHHHHHHHHHHTS--------------------GGGTTSEEEEEEE-HHH
T ss_pred             cccchHHHHHHHHHHHHHHHhC--------------------cccccCceEEeeecHHH
Confidence                   233334444554441                    22258899999999997

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0469|consensus

Probab=97.07  E-value=0.0028  Score=62.61  Aligned_cols=128  Identities=16%  Similarity=0.126  Sum_probs=80.4

Q ss_pred             CCCCCCcEEEEEEcC-ChhHHHHHhhhC------------cCcCc-----ceeeeEEEEEEEE----------------C
Q psy18160         41 GKRQSDCMAQIWLKD-RVDCMTQIVINV------------VFYPY-----LFSAAFITQTVCL----------------D   86 (373)
Q Consensus        41 ~~~~~~~i~ivvlG~-GKTsLl~rl~~~------------~~~~~-----Tig~~~~~~~i~~----------------~   86 (373)
                      ...+-..+-++.-.+ |||||...+...            +|...     ..|.+.....+.+                +
T Consensus        15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d   94 (842)
T KOG0469|consen   15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD   94 (842)
T ss_pred             cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence            334444566777777 999999988743            23322     2222222222221                3


Q ss_pred             CEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCC
Q psy18160         87 DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP  166 (373)
Q Consensus        87 ~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (373)
                      +..+.++++|.+|+-.|.+.....++-.|+++.|+|.-+.--.+ .+..+.+...                        +
T Consensus        95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQ-TETVLrQA~~------------------------E  149 (842)
T KOG0469|consen   95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIA------------------------E  149 (842)
T ss_pred             CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEec-hHHHHHHHHH------------------------h
Confidence            56788999999999999999999999999999999987642111 1112222222                        3


Q ss_pred             CCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160        167 NIVIALAGNKADLPTSRRCVEYSEGEA  193 (373)
Q Consensus       167 ~~piilVgnK~Dl~~~~~~v~~~e~~~  193 (373)
                      .+..+++.||.|..--+-+.+.++..+
T Consensus       150 RIkPvlv~NK~DRAlLELq~~~EeLyq  176 (842)
T KOG0469|consen  150 RIKPVLVMNKMDRALLELQLSQEELYQ  176 (842)
T ss_pred             hccceEEeehhhHHHHhhcCCHHHHHH
Confidence            566688999999643223455565433

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=96.99  E-value=0.0007  Score=62.12  Aligned_cols=110  Identities=20%  Similarity=0.199  Sum_probs=56.4

Q ss_pred             EEEEEeCCCcccccccchhhc--------cCCcEEEEEEECC---CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHh
Q psy18160         91 RFEIWDTAGQERYHTLAPMYY--------RNAQAAIIVYDIT---NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKE  159 (373)
Q Consensus        91 ~l~i~Dt~G~e~~~~l~~~~~--------~~ad~iilv~D~~---~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~  159 (373)
                      .+.|+|||||.++...+...-        ...-++++++|..   ++..|-..  ++..+..                  
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s~------------------  151 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS--LLLSLSI------------------  151 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH--HHHHHHH------------------
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH--HHHHHHH------------------
Confidence            578999999987765554433        4566889999975   33344322  2221111                  


Q ss_pred             hhhcCCCCCeEEEEEeCCCCCCCCcc------cCHH------------HHHHHHHH---cC-C-eEEEEcCCCCCCHHHH
Q psy18160        160 LQRMAPPNIVIALAGNKADLPTSRRC------VEYS------------EGEAYAEE---NG-L-LFMETSAKTAMNVNEI  216 (373)
Q Consensus       160 ~~~~~~~~~piilVgnK~Dl~~~~~~------v~~~------------e~~~~~~~---~~-~-~~~evSak~~~gI~~l  216 (373)
                         ...-+.|.+.|.||+|+.+....      .+.+            -..++++-   .+ . +++.+|++++++++++
T Consensus       152 ---~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L  228 (238)
T PF03029_consen  152 ---MLRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEEL  228 (238)
T ss_dssp             ---HHHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHH
T ss_pred             ---HhhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHH
Confidence               01137899999999999762100      0000            00111211   12 3 6999999999999999


Q ss_pred             HHHHHHH
Q psy18160        217 FVEIAKK  223 (373)
Q Consensus       217 f~~L~~~  223 (373)
                      +..+-+.
T Consensus       229 ~~~id~a  235 (238)
T PF03029_consen  229 LAAIDKA  235 (238)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887554

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd01856 YlqF YlqF

Probab=96.90  E-value=0.0019  Score=55.95  Aligned_cols=51  Identities=8%  Similarity=-0.092  Sum_probs=37.3

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQ  100 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~  100 (373)
                      .++++++|.   |||||+|++.+..+...  ..+.++....+.++   ..+.+|||||.
T Consensus       115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         115 GIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            367888887   99999999999877443  45555555555554   34789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=96.87  E-value=0.00049  Score=68.89  Aligned_cols=56  Identities=20%  Similarity=0.154  Sum_probs=43.2

Q ss_pred             ceEEEEEccCccccceeeEEeeeCc--ccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQ--FHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~--f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      .+|++++|++|+|||||+++++...  +...+..| .        .|+....+.++|.+  +.|||++-
T Consensus       203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgt-T--------rd~~~~~i~~~g~~--v~l~DTaG  260 (442)
T TIGR00450       203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGT-T--------RDVVEGDFELNGIL--IKLLDTAG  260 (442)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCc-E--------EEEEEEEEEECCEE--EEEeeCCC
Confidence            3799999999999999999999764  45666544 3        46656777788765  47999874

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=96.85  E-value=0.00043  Score=59.22  Aligned_cols=53  Identities=23%  Similarity=0.113  Sum_probs=35.8

Q ss_pred             EEEEEccCccccceeeEEeeeCccccc-c-cCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHEY-Q-ESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~~-~-~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      +++++|.+++|||+|++++..+.+... + .+|.+        ....  .+  +...+.+.|||++-
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~--------~~~~--~~--~~~~~~~~i~Dt~G   56 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKS--------LFVG--HF--DYKYLRWQVIDTPG   56 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccc--------eeEE--EE--ccCceEEEEEECCC
Confidence            679999999999999999998877432 2 12333        2211  11  22357899999874

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG0448|consensus

Probab=96.83  E-value=0.014  Score=59.86  Aligned_cols=66  Identities=17%  Similarity=0.252  Sum_probs=44.6

Q ss_pred             EEEEeCCCcc---cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160         92 FEIWDTAGQE---RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI  168 (373)
Q Consensus        92 l~i~Dt~G~e---~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (373)
                      +.+.|.||.+   +..+....+..++|++|||....+..+..+- .++....+                        ..+
T Consensus       208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~------------------------~Kp  262 (749)
T KOG0448|consen  208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE------------------------EKP  262 (749)
T ss_pred             ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc------------------------cCC
Confidence            4567777753   4555677788899999999998776554332 34444333                        245


Q ss_pred             eEEEEEeCCCCCCC
Q psy18160        169 VIALAGNKADLPTS  182 (373)
Q Consensus       169 piilVgnK~Dl~~~  182 (373)
                      -|+|+-||.|....
T Consensus       263 niFIlnnkwDasas  276 (749)
T KOG0448|consen  263 NIFILNNKWDASAS  276 (749)
T ss_pred             cEEEEechhhhhcc
Confidence            68899999998543

>KOG4273|consensus

Probab=96.81  E-value=0.015  Score=52.64  Aligned_cols=142  Identities=15%  Similarity=0.195  Sum_probs=84.3

Q ss_pred             ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEE----EEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhh
Q psy18160         56 RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTI----RFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT  128 (373)
Q Consensus        56 GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v----~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~S  128 (373)
                      ||-+|++|+....|...   .-...|+-.  .++.+.+    .+.|.-.  .+++.-..........+++.|||++....
T Consensus        18 g~~~ll~rl~s~dfed~ses~~~te~hgw--tid~kyysadi~lcishi--cde~~lpn~~~a~pl~a~vmvfdlse~s~   93 (418)
T KOG4273|consen   18 GDQLLLHRLGSEDFEDESESNDATEFHGW--TIDNKYYSADINLCISHI--CDEKFLPNAEIAEPLQAFVMVFDLSEKSG   93 (418)
T ss_pred             chHHHHHHhcchhheeeccccCceeeece--EecceeeecceeEEeecc--cchhccCCcccccceeeEEEEEeccchhh
Confidence            99999999999888766   112223222  2233322    1222111  12222122223445689999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------------c-------
Q psy18160        129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------------R-------  184 (373)
Q Consensus       129 f~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------------~-------  184 (373)
                      +..+..|+....-      ++                -+ ..+-+|||.|.....                 |       
T Consensus        94 l~alqdwl~htdi------ns----------------fd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~  150 (418)
T KOG4273|consen   94 LDALQDWLPHTDI------NS----------------FD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDIC  150 (418)
T ss_pred             hHHHHhhcccccc------cc----------------ch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhh
Confidence            9999988753211      00                01 245578888853210                 0       


Q ss_pred             -------------------ccCHHHHHHHHHHcCCeEEEEcCCC------------CCCHHHHHHHHHHHc
Q psy18160        185 -------------------CVEYSEGEAYAEENGLLFMETSAKT------------AMNVNEIFVEIAKKL  224 (373)
Q Consensus       185 -------------------~v~~~e~~~~~~~~~~~~~evSak~------------~~gI~~lf~~L~~~i  224 (373)
                                         ......+.+|+.++|+.|+|.+|.+            .+||+.+|..|-..+
T Consensus       151 dfgisetegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm  221 (418)
T KOG4273|consen  151 DFGISETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM  221 (418)
T ss_pred             hccccccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence                               0112235678889999999999843            248999998886554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	373
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-55
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-15
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-54
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		4e-14
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-54
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		5e-15
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-54
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		7e-15
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-53
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-14
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		2e-53
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		5e-15
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-53
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-14
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-53
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-14
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-53
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		3e-14
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-53
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		6e-15
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		4e-53
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		3e-14
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		2e-52
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		5e-15
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		8e-51
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		6e-15
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-43
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-07
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		3e-35
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		3e-06
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-31
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		1e-30
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		4e-30
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		3e-27
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		3e-27
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		9e-26
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-25
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-25
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-25
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		1e-25
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		1e-25
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-25
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-25
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		4e-25
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		4e-25
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		5e-25
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-24
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-24
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-24
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-24
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-24
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-24
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-24
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		2e-24
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		4e-24
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		8e-24
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		2e-06
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		1e-23
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		1e-23
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		1e-23
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		3e-23
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		5e-23
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		6e-23
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		9e-23
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-22
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		9e-04
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-22
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		3e-22
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		5e-22
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		6e-22
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		7e-22
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		4e-04
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		8e-22
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		8e-22
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		7e-04
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-21
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		1e-21
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		7e-04
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-21
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		2e-21
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		7e-21
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		6e-04
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		7e-21
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		6e-04
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		8e-21
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		6e-04
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		9e-21
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		7e-04
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		1e-20
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		1e-20
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-20
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		2e-20
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		4e-20
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		5e-20
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		9e-20
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		8e-04
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-19
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-19
1vg1_A	185	Gdp-bound Rab7 Length = 185		9e-19
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-18
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-18
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-18
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		3e-04
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		3e-18
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		4e-18
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		8e-18
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-17
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		4e-17
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		4e-17
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		8e-17
4fmc_F	117	Espg-Rab1 Complex Length = 117		1e-16
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		3e-16
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		7e-16
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-15
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-14
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-14
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		3e-14
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-13
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		1e-13
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		2e-13
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		5e-13
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-12
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		2e-12
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		3e-12
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		4e-12
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		4e-12
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		4e-12
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		5e-12
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		7e-12
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		9e-12
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		1e-11
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-11
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-11
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-11
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-11
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-11
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-11
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-11
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-11
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-11
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		3e-11
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		4e-11
1byu_A	216	Canine Gdp-Ran Length = 216		4e-11
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		4e-11
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		4e-11
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		4e-11
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		4e-11
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		4e-11
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		6e-11
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-11
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-11
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		7e-11
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		8e-11
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		9e-11
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		9e-11
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		1e-10
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-10
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-10
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-10
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-10
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		3e-10
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		3e-10
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		3e-10
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		4e-10
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		4e-10
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		5e-10
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		3e-09
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-09
4q21_A	189	Molecular Switch For Signal Transduction: Structura		3e-09
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		4e-09
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		4e-09
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		4e-09
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		5e-09
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-09
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		5e-09
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		5e-09
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		5e-09
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		5e-09
6q21_A	171	Molecular Switch For Signal Transduction: Structura		5e-09
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		5e-09
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		5e-09
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		5e-09
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		5e-09
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		6e-09
1wq1_R	166	Ras-Rasgap Complex Length = 166		6e-09
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-09
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		6e-09
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-09
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		7e-09
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		8e-09
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		8e-09
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		1e-08
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-08
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		1e-08
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-08
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-08
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-08
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		3e-08
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		3e-08
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		3e-08
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		4e-08
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		4e-08
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		4e-08
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		4e-08
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		4e-08
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		4e-08
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		4e-08
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		4e-08
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		4e-08
1s1c_A	183	Crystal Structure Of The Complex Between The Human		5e-08
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-08
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		6e-08
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		6e-08
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		6e-08
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		6e-08
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		6e-08
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		7e-08
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		7e-08
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		8e-08
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		9e-08
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		9e-08
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		9e-08
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		9e-08
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-07
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-07
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		2e-07
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		3e-07
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		4e-07
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		4e-07
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		4e-07
1mh1_A	186	Small G-Protein Length = 186		4e-07
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		4e-07
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		4e-07
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		6e-07
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		6e-07
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		9e-07
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		9e-07
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		1e-06
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		1e-06
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-06
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		1e-06
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		1e-06
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		1e-06
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		1e-06
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-06
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		1e-06
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		1e-06
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-06
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-06
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		2e-06
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-06
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-06
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-06
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		3e-06
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		3e-06
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		4e-06
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		6e-06
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		6e-06
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		6e-06
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		7e-06
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		7e-06
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		7e-06
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		7e-06
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		9e-06
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		9e-06
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		9e-06
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		9e-06
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		9e-06
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		1e-05
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		1e-05
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-05
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		1e-05
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		1e-05
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		1e-05
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-05
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-05
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-05
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-05
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		2e-05
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		2e-05
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		3e-05
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		3e-05
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		3e-05
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		4e-05
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		5e-05
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		7e-05
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		1e-04
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-04
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		2e-04
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		3e-04
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		4e-04
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		4e-04
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		4e-04
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		7e-04
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		8e-04
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		8e-04
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		8e-04
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		8e-04

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  212 bits (540), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/159 (65%), Positives = 121/159 (76%), Gaps = 22/159 (13%)
Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           AAF+TQ+VCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITNQ+TF RAK+W
Sbjct: 43  AAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTW 102
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
           VKE                     LQR A P+IVIALAGNKADL  ++R VEY E +AYA
Sbjct: 103 VKE---------------------LQRQASPSIVIALAGNKADL-ANKRMVEYEEAQAYA 140
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG 234
           ++N LLFMETSAKTAMNVN++F+ IAKKLPK E  N  G
Sbjct: 141 DDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGG 179

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 40/42 (95%)
Query: 291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
           + +KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG 
Sbjct: 2   SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 43

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  209 bits (533), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 103/149 (69%), Positives = 115/149 (77%), Gaps = 22/149 (14%)
Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN DTF RAK+W
Sbjct: 40  AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNW 99
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
           VKELQ                     R A PNIVIALAGNKADL  S+R VE+ E +AYA
Sbjct: 100 VKELQ---------------------RQASPNIVIALAGNKADLA-SKRAVEFQEAQAYA 137
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKL 224
           ++N LLFMETSAKTAMNVNEIF+ IAKKL
Sbjct: 138 DDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/36 (94%), Positives = 36/36 (100%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
           ICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTI
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTI 38

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  209 bits (533), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 103/149 (69%), Positives = 115/149 (77%), Gaps = 22/149 (14%)
Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN DTF RAK+W
Sbjct: 38  AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNW 97
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
           VKELQ                     R A PNIVIALAGNKADL  S+R VE+ E +AYA
Sbjct: 98  VKELQ---------------------RQASPNIVIALAGNKADLA-SKRAVEFQEAQAYA 135
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKL 224
           ++N LLFMETSAKTAMNVNEIF+ IAKKL
Sbjct: 136 DDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/38 (92%), Positives = 37/38 (97%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
           ICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG 
Sbjct: 1   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 38

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  209 bits (531), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 103/150 (68%), Positives = 115/150 (76%), Gaps = 22/150 (14%)
Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           AAF+TQTVCLDD T++FEIWDTAG ERYH+LAPMYYR AQAAI+VYDITN DTF RAK+W
Sbjct: 40  AAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNW 99
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
           VKELQ                     R A PNIVIALAGNKADL  S+R VE+ E +AYA
Sbjct: 100 VKELQ---------------------RQASPNIVIALAGNKADLA-SKRAVEFQEAQAYA 137
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLP 225
           ++N LLFMETSAKTAMNVNEIF+ IAKKLP
Sbjct: 138 DDNSLLFMETSAKTAMNVNEIFMAIAKKLP 167

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 35/38 (92%), Positives = 37/38 (97%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
           ICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG 
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 40

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  206 bits (523), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/158 (62%), Positives = 119/158 (75%), Gaps = 22/158 (13%)
Query: 69  FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
           F      AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 34  FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
           F RAK+WVKELQ                     R A PNIVIAL+GNKADL  ++R V++
Sbjct: 94  FARAKNWVKELQ---------------------RQASPNIVIALSGNKADLA-NKRAVDF 131
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
            E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 132 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/39 (87%), Positives = 37/39 (94%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
           KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG 
Sbjct: 3   KICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGA 41

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  206 bits (523), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/158 (62%), Positives = 119/158 (75%), Gaps = 22/158 (13%)
Query: 69  FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
           F      AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 35  FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 94
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
           F RAK+WVKELQ                     R A PNIVIAL+GNKADL  ++R V++
Sbjct: 95  FARAKNWVKELQ---------------------RQASPNIVIALSGNKADLA-NKRAVDF 132
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
            E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 133 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 38/39 (97%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
           KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG 
Sbjct: 4   KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 42

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  206 bits (523), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/158 (62%), Positives = 119/158 (75%), Gaps = 22/158 (13%)
Query: 69  FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
           F      AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 34  FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
           F RAK+WVKELQ                     R A PNIVIAL+GNKADL  ++R V++
Sbjct: 94  FARAKNWVKELQ---------------------RQASPNIVIALSGNKADLA-NKRAVDF 131
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
            E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 132 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/39 (87%), Positives = 37/39 (94%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
           KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG 
Sbjct: 3   KICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGA 41

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  206 bits (523), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/158 (62%), Positives = 119/158 (75%), Gaps = 22/158 (13%)
Query: 69  FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
           F      AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 34  FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
           F RAK+WVKELQ                     R A PNIVIAL+GNKADL  ++R V++
Sbjct: 94  FARAKNWVKELQ---------------------RQASPNIVIALSGNKADLA-NKRAVDF 131
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
            E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 132 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/39 (87%), Positives = 37/39 (94%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
           KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG 
Sbjct: 3   KICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGA 41

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  206 bits (523), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/158 (62%), Positives = 119/158 (75%), Gaps = 22/158 (13%)
Query: 69  FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
           F      AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 34  FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
           F RAK+WVKELQ                     R A PNIVIAL+GNKADL  ++R V++
Sbjct: 94  FARAKNWVKELQ---------------------RQASPNIVIALSGNKADLA-NKRAVDF 131
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
            E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 132 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/39 (87%), Positives = 37/39 (94%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
           KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG 
Sbjct: 3   KICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGA 41

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  205 bits (522), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 99/158 (62%), Positives = 119/158 (75%), Gaps = 22/158 (13%)
Query: 69  FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
           F      AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 34  FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
           F RAK+WVKELQ                     R A PNIVIAL+GNKADL  ++R V++
Sbjct: 94  FARAKNWVKELQ---------------------RQASPNIVIALSGNKADLA-NKRAVDF 131
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
            E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 132 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 38/39 (97%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
           KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG 
Sbjct: 3   KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 41

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  205 bits (521), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 99/158 (62%), Positives = 119/158 (75%), Gaps = 22/158 (13%)
Query: 69  FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
           F      AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 34  FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
           F RAK+WVKELQ                     R A PNIVIAL+GNKADL  ++R V++
Sbjct: 94  FARAKNWVKELQ---------------------RQASPNIVIALSGNKADL-ANKRAVDF 131
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
            E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 132 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/39 (87%), Positives = 37/39 (94%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
           KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG 
Sbjct: 3   KICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGA 41

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  202 bits (515), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/151 (64%), Positives = 117/151 (77%), Gaps = 22/151 (14%)
Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           AAF+TQTVCLDD T++FEIWDTAG ERYH+LAPMYYR AQAAI+VYDITN+++F RAK+W
Sbjct: 40  AAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNW 99
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
           VKELQ                     R A PNIVIAL+GNKADL  ++R V++ E ++YA
Sbjct: 100 VKELQ---------------------RQASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 137
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
           ++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 138 DDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 38/39 (97%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
           KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG 
Sbjct: 2   KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 40

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  197 bits (501), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 96/158 (60%), Positives = 115/158 (72%), Gaps = 22/158 (13%)
Query: 69  FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
           F      AAF+TQTVCLDD T++FEIWDTAGQERYH+LAP YYR AQAAI+VYDITN+++
Sbjct: 35  FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEES 94
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
           F RAK+WVKELQ                     R A PNIVIAL+GNKADL  ++R V++
Sbjct: 95  FARAKNWVKELQ---------------------RQASPNIVIALSGNKADLA-NKRAVDF 132
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
            E ++YA++N LLF ETSAKT+ NVNEIF  IAKKLPK
Sbjct: 133 QEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 38/39 (97%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
           KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG 
Sbjct: 4   KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 42

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 88/160 (55%), Positives = 110/160 (68%), Gaps = 22/160 (13%)
Query: 67  VVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ 126
           V F      AAF +QT+ ++D T++FEIWDTAGQERYH+LAPMYYR A AAIIV+D+TNQ
Sbjct: 38  VEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQ 97
Query: 127 DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV 186
            +F RAK WV+ELQ  A  N                   PN+V+ALAGNK+DL  +R+ V
Sbjct: 98  ASFERAKKWVQELQ--AQGN-------------------PNMVMALAGNKSDLLDARK-V 135
Query: 187 EYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
              + + YA+ENGL FMETSAKTA NV EIF EIA++LP+
Sbjct: 136 TAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 29/39 (74%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
           K    KLVLLG+   GKSSLVLRFV+ QF E+QESTIG 
Sbjct: 9   KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA 47

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  145 bits (367), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/154 (48%), Positives = 96/154 (62%), Gaps = 23/154 (14%)
Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           AAF+TQ V +++ T++FEIWDTAGQER+ +LAP YYRNAQAA++VYD+T   +F +A+ W
Sbjct: 38  AAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHW 97
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL--PTSRRCVEYSEGEA 193
                                VKEL   A  +I+IAL GNK D       R V   EGE 
Sbjct: 98  ---------------------VKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEK 136
Query: 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            AEE GLLF ETSAKT  NVN++F+ I +K+P K
Sbjct: 137 LAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQS------SHSISFSM 344
           +   KLVLLGE+AVGKSS+VLRFV   F E +E TIG    +       H++ F +
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEI 56

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/150 (44%), Positives = 97/150 (64%), Gaps = 22/150 (14%)
Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           A+F+T+TV   +   +F IWDTAGQER+  LAPMYYR + AAIIVYDIT ++TF   K+W
Sbjct: 40  ASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNW 99
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
           V+                     EL++  PP+IV+A+AGNK DL   R  +E  + + YA
Sbjct: 100 VR---------------------ELRQHGPPSIVVAIAGNKCDLTDVREVME-RDAKDYA 137
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLP 225
           +    +F+ETSAK A+N+NE+F+EI++++P
Sbjct: 138 DSIHAIFVETSAKNAININELFIEISRRIP 167

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 96/150 (64%), Gaps = 22/150 (14%)
Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           A+F+T+TV   +   +F IWDTAG ER+  LAPMYYR + AAIIVYDIT ++TF   K+W
Sbjct: 41  ASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNW 100
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
           V+                     EL++  PP+IV+A+AGNK DL   R  +E  + + YA
Sbjct: 101 VR---------------------ELRQHGPPSIVVAIAGNKCDLTDVREVME-RDAKDYA 138
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLP 225
           +    +F+ETSAK A+N+NE+F+EI++++P
Sbjct: 139 DSIHAIFVETSAKNAININELFIEISRRIP 168

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  128 bits (322), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 92/152 (60%), Gaps = 22/152 (14%)
Query: 74  FSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK 133
             A+F+T+TV   +   +F IWDTAGQER+H+LAPMYYR + AA+IVYDIT QD+F   K
Sbjct: 56  IGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLK 115
Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193
            WV                     KEL+   P NIV+A+AGNK DL   R  V   + + 
Sbjct: 116 KWV---------------------KELKEHGPENIVMAIAGNKCDLSDIRE-VPLKDAKE 153
Query: 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225
           YAE  G + +ETSAK A+N+ E+F  I++++P
Sbjct: 154 YAESIGAIVVETSAKNAINIEELFQGISRQIP 185

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 90/150 (60%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  + V +D   I+ +IWDTAGQE + ++   YYR A  A++VYDIT ++T         
Sbjct: 58  FGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET--------- 108
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                       F    SW+++ ++ +  N+VI L GNK+DL  SRR V+  EGEA+A E
Sbjct: 109 ------------FNHLTSWLEDARQHSSSNMVIMLIGNKSDLE-SRRDVKREEGEAFARE 155
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           +GL+FMETSAKTA NV E F+  AK++ +K
Sbjct: 156 HGLIFMETSAKTACNVEEAFINTAKEIYRK 185

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 90/150 (60%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  + + +D   I+ +IWDTAGQE + ++   YYR A  A++VYDIT +D          
Sbjct: 47  FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRD---------- 96
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                      TF    +W+++ ++ +  N+VI L GNK+DL  SRR V+  EGEA+A E
Sbjct: 97  -----------TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE-SRREVKKEEGEAFARE 144
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           +GL+FMETSAKTA NV E F+  AK++ +K
Sbjct: 145 HGLIFMETSAKTASNVEEAFINTAKEIYEK 174

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  114 bits (285), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 85/154 (55%), Gaps = 22/154 (14%)
Query: 71  PYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFG 130
           P+     F T+ + +    I+ +IWDTAGQER+  +   YYR A  A++VYDIT + T  
Sbjct: 45  PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST-- 102
Query: 131 RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
                              +    SW+ + + +  PN VI L GNKADL  ++R V Y E
Sbjct: 103 -------------------YNHLSSWLTDARNLTNPNTVIILIGNKADLE-AQRDVTYEE 142
Query: 191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
            + +AEENGLLF+E SAKT  NV + F+E AKK+
Sbjct: 143 AKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ LD  TI+ +IWDTAGQER+ T+   YYR A   I+VYD+T+Q++F   K W++
Sbjct: 36  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 95
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E+ R A  N++                       L GNK DL T+++ V+Y+  + +A+ 
Sbjct: 96  EIDRYASENVNKL---------------------LVGNKCDL-TTKKVVDYTTAKEFADS 133
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 134 LGIPFLETSAKNATNVEQSFMTMAAEIKKR 163

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ LD  TI+ +IWDTAGQER+ T+   YYR A   I+VYD+T+Q++F   K W++
Sbjct: 53  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 112
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E+ R A  N++                       L GNK DL T+++ V+Y+  + +A+ 
Sbjct: 113 EIDRYASENVNKL---------------------LVGNKCDL-TTKKVVDYTTAKEFADS 150
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 151 LGIPFLETSAKNATNVEQSFMTMAAEIKKR 180

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ LD  TI+ +IWDTAGQER+ T+   YYR A   I+VYD+T+Q++F   K W++
Sbjct: 53  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 112
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E+ R A  N++                       L GNK DL T+++ V+Y+  + +A+ 
Sbjct: 113 EIDRYASENVNKL---------------------LVGNKCDL-TTKKVVDYTTAKEFADS 150
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 151 LGIPFLETSAKNATNVEQSFMTMAAEIKKR 180

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ LD  TI+ +IWDTAGQER+ T+   YYR A   I+VYD+T+Q++F   K W++
Sbjct: 43  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 102
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E+ R A  N++                       L GNK DL T+++ V+Y+  + +A+ 
Sbjct: 103 EIDRYASENVNKL---------------------LVGNKCDL-TTKKVVDYTTAKEFADS 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 141 LGIPFLETSAKNATNVEQSFMTMAAEIKKR 170

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ LD  TI+ +IWDTAGQER+ T+   YYR A   I+VYD+T+Q++F   K W++
Sbjct: 62  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 121
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E+ R A  N++                       L GNK DL T+++ V+Y+  + +A+ 
Sbjct: 122 EIDRYASENVNKL---------------------LVGNKCDL-TTKKVVDYTTAKEFADS 159
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 160 LGIPFLETSAKNATNVEQSFMTMAAEIKKR 189

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ LD  TI+ +IWDTAGQER+ T+   YYR A   I+VYD+T+Q++F   K W++
Sbjct: 43  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 102
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E+ R A  N++                       L GNK DL T+++ V+Y+  + +A+ 
Sbjct: 103 EIDRYASENVNKL---------------------LVGNKCDL-TTKKVVDYTTAKEFADS 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 141 LGIPFLETSAKNATNVEQSFMTMAAEIKKR 170

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ L++ T++ +IWDTAGQER+ T+   YYR A   IIVYD+T++D+F   K W++
Sbjct: 46  FKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQ 105
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E+ R A  N++                       L GNK DL  S+R V   EG   A+ 
Sbjct: 106 EIDRYAMENVNKL---------------------LVGNKCDL-VSKRVVTSDEGRELADS 143
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           +G+ F+ETSAK A NV + F  +A ++ K+
Sbjct: 144 HGIKFIETSAKNAYNVEQAFHTMAGEIKKR 173

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 87/148 (58%), Gaps = 22/148 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+++T+ L+D TIR ++WDTAGQER+ +L P Y R++ AA++VYDIT             
Sbjct: 43  FLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDIT------------- 89
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                   N+++F +   W+ +++     +++I L GNK DL   +R V   EGE  A+E
Sbjct: 90  --------NVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA-DKRQVSIEEGERKAKE 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLP 225
             ++F+ETSAK   NV ++F  +A  LP
Sbjct: 141 LNVMFIETSAKAGYNVKQLFRRVAAALP 168

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 84/154 (54%), Gaps = 22/154 (14%)
Query: 71  PYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFG 130
           P+     F T+ + +    I+ +IWDTAGQ R+  +   YYR A  A++VYDIT + T  
Sbjct: 60  PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRST-- 117
Query: 131 RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
                              +    SW+ + + +  PN VI L GNKADL  ++R V Y E
Sbjct: 118 -------------------YNHLSSWLTDARNLTNPNTVIILIGNKADLE-AQRDVTYEE 157
Query: 191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
            + +AEENGLLF+E SAKT  NV + F+E AKK+
Sbjct: 158 AKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ LD  TI+ +IWDTAGQER+ T+   YYR A   I+VYD+T+Q++F   K W++
Sbjct: 70  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 129
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E+ R A  N++                       L GNK DL T+++ V+Y+  + +A+ 
Sbjct: 130 EIDRYASENVNKL---------------------LVGNKCDL-TTKKVVDYTTAKEFADS 167
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G+ F+ETSAK A NV + F   A ++ K+
Sbjct: 168 LGIPFLETSAKNATNVEQSFXTXAAEIKKR 197

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 22/151 (14%)
Query: 74  FSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK 133
             A+F+T+ + +    +   IWDTAGQER+H L P+YYR++  AI+VYDIT++D+F + K
Sbjct: 39  LGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVK 98
Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193
           +W                     VKEL++M    I + + GNK DL   R  V   E E+
Sbjct: 99  NW---------------------VKELRKMLGNEICLCIVGNKIDLEKERH-VSIQEAES 136
Query: 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
           YAE  G     TSAK    + E+F+++ K++
Sbjct: 137 YAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 22/151 (14%)
Query: 74  FSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK 133
             A+F+T+ + +    +   IWDTAGQER+H L P+YYR++  AI+VYDIT++D+F + K
Sbjct: 39  LQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVK 98
Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193
           +W                     VKEL++M    I + + GNK DL   R  V   E E+
Sbjct: 99  NW---------------------VKELRKMLGNEICLCIVGNKIDLEKERH-VSIQEAES 136
Query: 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
           YAE  G     TSAK    + E+F+++ K++
Sbjct: 137 YAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 22/151 (14%)
Query: 74  FSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK 133
             A+F+T+ + +    +   IWDTAGQER+H L P+YYR++  AI+VYDIT++D+F + K
Sbjct: 53  LQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVK 112
Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193
           +W                     VKEL++M    I + + GNK DL   R  V   E E+
Sbjct: 113 NW---------------------VKELRKMLGNEICLCIVGNKIDLEKERH-VSIQEAES 150
Query: 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
           YAE  G     TSAK    + E+F+++ K++
Sbjct: 151 YAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ LD  TI+ +IWDTAGQER+ T+   YYR A   I+VYD+T+Q+++   K W++
Sbjct: 46  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQ 105
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E+ R A  N++                       L GNK+DL T+++ V+ +  + +A+ 
Sbjct: 106 EIDRYASENVNKL---------------------LVGNKSDL-TTKKVVDNTTAKEFADS 143
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 144 LGIPFLETSAKNATNVEQAFMTMAAEIKKR 173

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ LD  TI+ +IWDTAGQER+ T+   YYR A   I+VYD+T+Q+++   K W++
Sbjct: 46  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQ 105
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E+ R A  N++                       L GNK+DL T+++ V+ +  + +A+ 
Sbjct: 106 EIDRYASENVNKL---------------------LVGNKSDL-TTKKVVDNTTAKEFADS 143
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 144 LGIPFLETSAKNATNVEQAFMTMAAEIKKR 173

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 97/188 (51%), Gaps = 27/188 (14%)
Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           Y       F+++T+ L+D TIR ++WDTAG ER+ +L P Y R++ AA++VYDIT     
Sbjct: 42  YQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDIT----- 96
Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
                           N+++F +   W+ +++     +++I L GNK DL   +R V   
Sbjct: 97  ----------------NVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL-ADKRQVSIE 139
Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETA-----EA 244
           EGE  A+E  ++F+ETSAK   NV ++F  +A  LP  E    +    +++       E 
Sbjct: 140 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQ 199
Query: 245 PKTSNCCN 252
           P +   C+
Sbjct: 200 PVSEGGCS 207

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 87/150 (58%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ LD  TI+ +IWDTAGQER+ T+   YYR A   I+VYD+T+Q++F   K W++
Sbjct: 45  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 104
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E+ R A  N++                       L G K DL T+++ V+Y+  + +A+ 
Sbjct: 105 EIDRYASENVNKL---------------------LVGIKCDL-TTKKVVDYTTAKEFADS 142
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 143 LGIPFLETSAKNATNVEQSFMTMAAEIKKR 172

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 88/148 (59%), Gaps = 22/148 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+++T+ L+D T+R ++WDTAGQER+ +L P Y R++  A++VYDITN ++F +   W+ 
Sbjct: 51  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWID 110
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           +++                    +R    +++I L GNK DL + +R V   EGE  A+E
Sbjct: 111 DVR-------------------TER--GSDVIIMLVGNKTDL-SDKRQVSTEEGERKAKE 148
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLP 225
             ++F+ETSAK   NV ++F  +A  LP
Sbjct: 149 LNVMFIETSAKAGYNVKQLFRRVAAALP 176

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 86/147 (58%), Gaps = 22/147 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+++T+ L+D T+R ++WDTAGQER+ +L P Y R++  A++VYDIT             
Sbjct: 39  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT------------- 85
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                   N+++F +   W+ +++     +++I L GNK DL   +R +   EGE  A+E
Sbjct: 86  --------NLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLA-DKRQITIEEGEQRAKE 136
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL 224
             ++F+ETSAKT  NV ++F  +A  L
Sbjct: 137 LSVMFIETSAKTGYNVKQLFRRVASAL 163

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  107 bits (268), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 25/141 (17%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F+IWDTAGQERY ++ P+YYR A  AI+V+DI+N +T  RAK+WV +L+         
Sbjct: 93  IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--------- 143
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            N +I L  NK D   ++  V+  E + YA++N LLF++TSAKT
Sbjct: 144 --------------ISSNYIIILVANKID--KNKFQVDILEVQKYAQDNNLLFIQTSAKT 187
Query: 210 AMNVNEIFVEIAKKLPKKEVN 230
             N+  IF  +A+++ K  +N
Sbjct: 188 GTNIKNIFYMLAEEIYKNIIN 208

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 27/39 (69%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
           K   YK VLLGES+VGKSS+VLR  +  FHE   +TIG 
Sbjct: 4   KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGA 42

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 86/151 (56%), Gaps = 22/151 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+++T+ L+D T+R ++WDTAG ER+ +L P Y R++  A++VYDIT             
Sbjct: 43  FLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDIT------------- 89
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                   N+++F +   W+ +++     +++I L GNK DL   +R V   EGE  A+E
Sbjct: 90  --------NVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA-DKRQVSIEEGERKAKE 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
             ++F+ETSAK   NV ++F  +A  LP  E
Sbjct: 141 LNVMFIETSAKAGYNVKQLFRRVAAALPGME 171

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 27/187 (14%)
Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           Y       F+++T+ L+D T+R ++WDTAG ER+ +L P Y R++  A++VYDIT     
Sbjct: 45  YQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDIT----- 99
Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
                           N+++F +   W+ +++     +++I L GNK DL   +R V   
Sbjct: 100 ----------------NVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL-ADKRQVSIE 142
Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETA-----EA 244
           EGE  A+E  ++F+ETSAK   NV ++F  +A  LP  E    +    +++       E 
Sbjct: 143 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQ 202
Query: 245 PKTSNCC 251
           P +   C
Sbjct: 203 PVSEGGC 209

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 22/147 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+++T+ L+D T+R ++WDTAGQER+ +L P Y R++  A++VYDIT             
Sbjct: 38  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT------------- 84
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                   N+++F +   W+ +++     +++I L GNK DL   +R V   EGE  A+E
Sbjct: 85  --------NVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA-DKRQVSIEEGERKAKE 135
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL 224
             ++F+ETSAK   NV ++F  +A  L
Sbjct: 136 LNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 22/152 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  + + +D V ++ ++WDTAGQER+ ++   YYR+A A +++YD+TN+ +F        
Sbjct: 48  FRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASF-------- 99
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                   NI      ++W+ E+   A  ++ + L GNK D     R V+  +GE  A+E
Sbjct: 100 -------DNI------QAWLTEIHEYAQHDVALMLLGNKVD-SAHERVVKREDGEKLAKE 145
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229
            GL FMETSAKT +NV+  F  IAK+L ++ +
Sbjct: 146 YGLPFMETSAKTGLNVDLAFTAIAKELKRRSM 177

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 22/157 (14%)
Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           Y       F  +TV LD  T++ +IWDTAGQER+ T+   YYR +   IIVYD+T+Q++F
Sbjct: 37  YISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF 96
Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
              K                      W++E+ R A   ++  L GNK DL   +R VEY 
Sbjct: 97  NGVK---------------------MWLQEIDRYATSTVLKLLVGNKCDLK-DKRVVEYD 134
Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
             + +A+ N + F+ETSA  + NV + F+ +A+++ +
Sbjct: 135 VAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 22/157 (14%)
Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           Y       F  +TV LD  T++ +IWDTAGQER+ T+   YYR +   IIVYD+T+Q++F
Sbjct: 37  YISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF 96
Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
              K                      W++E+ R A   ++  L GNK DL   +R VEY 
Sbjct: 97  NGVK---------------------MWLQEIDRYATSTVLKLLVGNKCDLK-DKRVVEYD 134
Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
             + +A+ N + F+ETSA  + NV + F+ +A+++ +
Sbjct: 135 VAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  104 bits (259), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 83/149 (55%), Gaps = 22/149 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +TV LD  T++ +IWDTAGQER+ T+   YYR +   IIVYD+T+Q++F   K    
Sbjct: 58  FKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK---- 113
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                             W++E+ R A   ++  L GNK DL   +R VEY   + +A+ 
Sbjct: 114 -----------------MWLQEIDRYATSTVLKLLVGNKCDLK-DKRVVEYDVAKEFADA 155
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
           N + F+ETSA  + NV + F+ +A+++ +
Sbjct: 156 NKMPFLETSALDSTNVEDAFLTMARQIKE 184

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 85/147 (57%), Gaps = 22/147 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+++T+ LD+  +R ++WDTAGQER+ +L P Y R++ AAI+VYDITN+ +F     W++
Sbjct: 38  FLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQ 97
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           ++       ++  G+              +++IAL GNK DL   R+ V Y EG   A+E
Sbjct: 98  DI-------LNERGK--------------DVIIALVGNKTDLGDLRK-VTYEEGXQKAQE 135
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL 224
               F ETSAK   N+  +F + A KL
Sbjct: 136 YNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +YKLV LGE AVGK+S++ RF    F    +STIG
Sbjct: 1   KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIG 35

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 23/156 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F ++ V +   T++ +IWDTAGQER+ ++   YYR A  A++VYDIT+++T+    +W  
Sbjct: 62  FGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAW-- 119
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                              + + + +A PNIV+ L GNK DL   R  V + E   +A+E
Sbjct: 120 -------------------LTDARTLASPNIVVILCGNKKDLDPERE-VTFLEASRFAQE 159
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQ 233
           N L+F+ETSA T  NV E F++ A+ +  K +++G+
Sbjct: 160 NELMFLETSALTGENVEEAFLKCARTILNK-IDSGE 194

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 89/169 (52%), Gaps = 31/169 (18%)
Query: 67  VVFYPYLFSAAFIT--------QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118
           V F    F+ +FIT        +TV ++   ++ +IWDTAGQER+ T+   YYR A   I
Sbjct: 21  VRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80
Query: 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178
           +VYDIT++ TF   K W K +   A               E Q +        L GNK+D
Sbjct: 81  LVYDITDERTFTNIKQWFKTVNEHAND-------------EAQLL--------LVGNKSD 119
Query: 179 LPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           + T  R V   +GEA A+E G+ F+E+SAK   NVNEIF  +AK + +K
Sbjct: 120 MET--RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 89/169 (52%), Gaps = 31/169 (18%)
Query: 67  VVFYPYLFSAAFIT--------QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118
           V F    F+ +FIT        +TV ++   ++ ++WDTAGQER+ T+   YYR A   I
Sbjct: 38  VRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97
Query: 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178
           +VYD+T++ TF   K W K +   A               E Q +        L GNK+D
Sbjct: 98  LVYDVTDERTFTNIKQWFKTVNEHAND-------------EAQLL--------LVGNKSD 136
Query: 179 LPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           + T  R V   +GEA A+E G+ F+E+SAK   NVNEIF  +AK + +K
Sbjct: 137 MET--RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  101 bits (252), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 79/138 (57%), Gaps = 22/138 (15%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           ++ +IWDTAGQER+ ++   YYR A  A++VYDIT+++T+    +W+ +  RM       
Sbjct: 59  VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD-ARM------- 110
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                        +A  NIVI L GNK DL   R  V + E   +A+EN L+F+ETSA T
Sbjct: 111 -------------LASQNIVIILCGNKKDLDADRE-VTFLEASRFAQENELMFLETSALT 156
Query: 210 AMNVNEIFVEIAKKLPKK 227
             NV E FV+ A+K+  K
Sbjct: 157 GENVEEAFVQCARKILNK 174

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 89/180 (49%), Gaps = 31/180 (17%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+++ +D  TI+ +IWDTAGQERY  +   YYR A  A++VYDI    T+   + W  
Sbjct: 42  FATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERW-- 99
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                              +KEL+  A  NIVI L GNK+DL    R V   E  A+AE+
Sbjct: 100 -------------------LKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEK 139
Query: 198 NGLLFMETSAKTAMNVNEIFVEI---------AKKLPKKEVNNGQGGRRLVETAEAPKTS 248
           N L F+ETSA  + NV E F  I          K++  +  ++   G  +V+ +  P T 
Sbjct: 140 NNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTD 199

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
           +K+VL+G+S VGKS+L+ RF R +F+   +STIG E
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 41

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 88/169 (52%), Gaps = 31/169 (18%)
Query: 67  VVFYPYLFSAAFIT--------QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118
           V F    F+ +FIT        +TV ++   ++ +IWDTAGQER+ T+   YYR A   I
Sbjct: 21  VRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAXGII 80
Query: 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178
           +VYDIT++ TF   K W K +   A               E Q +        L GNK+D
Sbjct: 81  LVYDITDERTFTNIKQWFKTVNEHAND-------------EAQLL--------LVGNKSD 119
Query: 179 LPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
             T  R V   +GEA A+E G+ F+E+SAK   NVNEIF  +AK + +K
Sbjct: 120 XET--RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 79/149 (53%), Gaps = 22/149 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+++ +D  TI+ +IWDTAGQERY  +   YYR A  A++VYDI    T+   + W  
Sbjct: 57  FATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW-- 114
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                              +KEL+  A  NIVI L GNK+DL    R V   E  A+AE+
Sbjct: 115 -------------------LKELRDHADSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEK 154
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
           NGL F+ETSA  + NV   F  I  ++ +
Sbjct: 155 NGLSFIETSALDSTNVEAAFQTILTEIYR 183

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
           +K+VL+G+S VGKS+L+ RF R +F+   +STIG E
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 56

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 89/169 (52%), Gaps = 31/169 (18%)
Query: 67  VVFYPYLFSAAFIT--------QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118
           V F    F+ +FIT        +TV ++   ++ ++WDTAGQER+ T+   YYR A   I
Sbjct: 25  VRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 84
Query: 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178
           +VYD+T++ TF   K W K +   A               E Q +        L GNK+D
Sbjct: 85  LVYDVTDERTFTNIKQWFKTVNEHAND-------------EAQLL--------LVGNKSD 123
Query: 179 LPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           + T  R V   +GEA A+E G+ F+E+SAK   NVNEIF  +AK + +K
Sbjct: 124 MET--RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 170

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/143 (40%), Positives = 76/143 (53%), Gaps = 22/143 (15%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+++ +D  TI+ +IWDTAGQERY  +   YYR A  A++VYDI    T+   + W  
Sbjct: 66  FATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW-- 123
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                              +KEL+  A  NIVI L GNK+DL    R V   E  A+AE+
Sbjct: 124 -------------------LKELRDHADSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEK 163
Query: 198 NGLLFMETSAKTAMNVNEIFVEI 220
           NGL F+ETSA  + NV   F  I
Sbjct: 164 NGLSFIETSALDSTNVEAAFQTI 186

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
           +K+VL+G+S VGKS+L+ RF R +F+   +STIG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 65

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 22/138 (15%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           ++ +IWDTAGQER+ ++   YYR A  A++VYDIT+++T+    +W+ +  RM       
Sbjct: 60  VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD-ARM------- 111
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                        +A  NIVI L GNK DL   R  V + E   +A+EN L+F+ETSA T
Sbjct: 112 -------------LASQNIVIILCGNKKDLDADRE-VTFLEASRFAQENELMFLETSALT 157
Query: 210 AMNVNEIFVEIAKKLPKK 227
             +V E FV+ A+K+  K
Sbjct: 158 GEDVEEAFVQCARKILNK 175

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 88/169 (52%), Gaps = 31/169 (18%)
Query: 67  VVFYPYLFSAAFIT--------QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118
           V F    F+ +FIT        +TV ++   ++ ++WDTAGQER+ T+   YYR A   I
Sbjct: 21  VRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGII 80
Query: 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178
           +VYD+T++ TF   K W K +   A               E Q +        L GNK+D
Sbjct: 81  LVYDVTDERTFTNIKQWFKTVNEHAND-------------EAQLL--------LVGNKSD 119
Query: 179 LPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
             T  R V   +GEA A+E G+ F+E+SAK   NVNEIF  +AK + +K
Sbjct: 120 XET--RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 74/140 (52%), Gaps = 22/140 (15%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+++ +D  TI+ +IWDTAG ERY  +   YYR A  A++VYDI    T+   + W  
Sbjct: 42  FATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW-- 99
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                              +KEL+  A  NIVI L GNK+DL    R V   E  A+AE+
Sbjct: 100 -------------------LKELRDHADSNIVIXLVGNKSDLR-HLRAVPTDEARAFAEK 139
Query: 198 NGLLFMETSAKTAMNVNEIF 217
           NGL F+ETSA  + NV   F
Sbjct: 140 NGLSFIETSALDSTNVEAAF 159

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
           +K+VL+G+S VGKS+L+ RF R +F+   +STIG E
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 41

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 74/140 (52%), Gaps = 22/140 (15%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+++ +D  TI+ +IWDTAG ERY  +   YYR A  A++VYDI    T+   + W  
Sbjct: 48  FATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW-- 105
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                              +KEL+  A  NIVI L GNK+DL    R V   E  A+AE+
Sbjct: 106 -------------------LKELRDHADSNIVIXLVGNKSDLR-HLRAVPTDEARAFAEK 145
Query: 198 NGLLFMETSAKTAMNVNEIF 217
           NGL F+ETSA  + NV   F
Sbjct: 146 NGLSFIETSALDSTNVEAAF 165

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
           +K+VL+G+S VGKS+L+ RF R +F+   +STIG E
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 47

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 97.8 bits (242), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 78/149 (52%), Gaps = 22/149 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+++ +D  TI+ +IWDTAG ERY  +   YYR A  A++VYDI    T+   + W  
Sbjct: 45  FATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW-- 102
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                              +KEL+  A  NIVI L GNK+DL    R V   E  A+AE+
Sbjct: 103 -------------------LKELRDHADSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEK 142
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
           NGL F+ETSA  + NV   F  I  ++ +
Sbjct: 143 NGLSFIETSALDSTNVEAAFQTILTEIYR 171

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
           +K+VL+G+S VGKS+L+ RF R +F+   +STIG E
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 44

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 97.8 bits (242), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 75/143 (52%), Gaps = 22/143 (15%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+++ +D  TI+ +IWDTAG ERY  +   YYR A  A++VYDI    T+   + W  
Sbjct: 66  FATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW-- 123
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                              +KEL+  A  NIVI L GNK+DL    R V   E  A+AE+
Sbjct: 124 -------------------LKELRDHADSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEK 163
Query: 198 NGLLFMETSAKTAMNVNEIFVEI 220
           NGL F+ETSA  + NV   F  I
Sbjct: 164 NGLSFIETSALDSTNVEAAFQTI 186

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
           +K+VL+G+S VGKS+L+ RF R +F+   +STIG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 65

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 78/138 (56%), Gaps = 22/138 (15%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           ++ +IWDTAG ER+ ++   YYR A  A++VYDIT+++T+    +W+ +  RM       
Sbjct: 57  VKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD-ARM------- 108
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                        +A  NIVI L GNK DL   R  V + E   +A+EN L+F+ETSA T
Sbjct: 109 -------------LASQNIVIILCGNKKDLDADRE-VTFLEASRFAQENELMFLETSALT 154
Query: 210 AMNVNEIFVEIAKKLPKK 227
             +V E FV+ A+K+  K
Sbjct: 155 GEDVEEAFVQCARKILNK 172

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 76/150 (50%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+TV L    ++ +IWDTAG ERY  +   YYR A  A++V+D+T   T         
Sbjct: 47  FSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT--------- 97
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                       +   + W+KEL   A   IV+ L GNK+DL  +R  V   E   +AE 
Sbjct: 98  ------------YAVVERWLKELYDHAEATIVVMLVGNKSDLSQARE-VPTEEARMFAEN 144
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           NGLLF+ETSA  + NV   F  + K++  K
Sbjct: 145 NGLLFLETSALDSTNVELAFETVLKEIFAK 174

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 76/150 (50%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+TV L    ++ +IWDTAG ERY  +   YYR A  A++V+D+T   T         
Sbjct: 62  FSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT--------- 112
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                       +   + W+KEL   A   IV+ L GNK+DL  +R  V   E   +AE 
Sbjct: 113 ------------YAVVERWLKELYDHAEATIVVMLVGNKSDLSQARE-VPTEEARMFAEN 159
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           NGLLF+ETSA  + NV   F  + K++  K
Sbjct: 160 NGLLFLETSALDSTNVELAFETVLKEIFAK 189

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 80/159 (50%), Gaps = 25/159 (15%)
Query: 69  FYPYL---FSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
           F P L       F  +T+ +D    +  IWDTAGQER+ TL P YYR AQ  I+VYD+T 
Sbjct: 40  FDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTR 99
Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
           +DTF +  +W+ EL+     N                    +IV  L GNK D     R 
Sbjct: 100 RDTFVKLDNWLNELETYCTRN--------------------DIVNXLVGNKID--KENRE 137
Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
           V+ +EG  +A ++  LF+E SAKT   V   F E+ +K+
Sbjct: 138 VDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ LD   I+ +IWDTAGQER+ T+   YYR A   ++VYDITN+ +F   ++W++
Sbjct: 43  FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIR 102
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
            ++  A  +++                       + GNK D+   +R V    GE  A +
Sbjct: 103 NIEEHASADVEKM---------------------ILGNKCDV-NDKRQVSKERGEKLALD 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G+ FMETSAK  +NV   F  +A+ +  K
Sbjct: 141 YGIKFMETSAKANINVENAFFTLARDIKAK 170

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ LD   I+ +IWDTAGQER+ T+   YYR A   ++VYDITN+ +F   ++W++
Sbjct: 45  FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIR 104
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
            ++  A  +++                       + GNK D+   +R V    GE  A +
Sbjct: 105 NIEEHASADVEKM---------------------ILGNKCDV-NDKRQVSKERGEKLALD 142
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G+ FMETSAK  +NV   F  +A+ +  K
Sbjct: 143 YGIKFMETSAKANINVENAFFTLARDIKAK 172

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+T+ ++   I+ +IWDTAGQERY  +   YYR A  A+IVYDI+   ++     W  
Sbjct: 50  FATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW-- 107
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                              + EL+  A  N+ + L GNK+DL    R V   E + +A+E
Sbjct: 108 -------------------LSELRENADDNVAVGLIGNKSDL-AHLRAVPTEESKTFAQE 147
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           N LLF ETSA  + NV++ F E+   + +K
Sbjct: 148 NQLLFTETSALNSENVDKAFEELINTIYQK 177

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
           +K+VL+G+S VGKS+L+ RF + +F+   +STIG E
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVE 49

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 23/151 (15%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +TV L    IR +IWDTAGQER++++   YYR+A+  I+VYDIT ++TF     W+K
Sbjct: 63  FKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMK 122
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
            + + A  + +                     + L GNK D  T R  +   +GE +A++
Sbjct: 123 MIDKYASEDAE---------------------LLLVGNKLDCETDRE-ITRQQGEKFAQQ 160
Query: 198 -NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
             G+ F E SAK   NV+EIF+++   + KK
Sbjct: 161 ITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 22/147 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+ +TV ++   ++ +IWDTAGQER+ ++   YYR+A A I+ YDIT +++F        
Sbjct: 63  FMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESF-------- 114
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
              R  P           W++E+++ A   ++  L GNK DL   RR V     E ++E 
Sbjct: 115 ---RCLP----------EWLREIEQYASNKVITVLVGNKIDL-AERREVSQQRAEEFSEA 160
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL 224
             + ++ETSAK + NV ++F+++A +L
Sbjct: 161 QDMYYLETSAKESDNVEKLFLDLACRL 187

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 18/159 (11%)
Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           Y     A F+T+ V +DD  +  +IWDTAGQER+ +L   +YR A   ++V+D+T  +TF
Sbjct: 37  YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTF 96
Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
               SW  E    A P                   P N    + GNK DL   +   + +
Sbjct: 97  KTLDSWRDEFLIQASPR-----------------DPENFPFVVLGNKIDLENRQVATKRA 139
Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
           +   Y+ +N + + ETSAK A+NV + F  IA+   K+E
Sbjct: 140 QAWCYS-KNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 23/148 (15%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ +    ++ +IWDTAGQER+ T+   YYR+A  AI+ YDIT + +F        
Sbjct: 66  FTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSF-------- 117
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
               ++ P+         W++++++ A  NIV  L GNK+DL +  R V  +E ++ AE 
Sbjct: 118 ----LSVPH---------WIEDVRKYAGSNIVQLLIGNKSDL-SELREVSLAEAQSLAEH 163
Query: 198 NGLL-FMETSAKTAMNVNEIFVEIAKKL 224
             +L  +ETSAK + NV E F+ +A +L
Sbjct: 164 YDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 18/159 (11%)
Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           Y     A F+T+ V +DD  +  +IWDTAGQER+ +L   +YR A   ++V+D+T  +TF
Sbjct: 37  YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTF 96
Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
               SW  E    A P                   P N    + GNK DL   +   + +
Sbjct: 97  KTLDSWRDEFLIQASPR-----------------DPENFPFVVLGNKIDLENRQVATKRA 139
Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
           +   Y+ +N + + ETSAK A+NV + F  IA+   K+E
Sbjct: 140 QAWCYS-KNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 23/144 (15%)
Query: 78  FITQTVCL-DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
           F T+++ L ++  I+ +IWDTAGQERY  +   YYR A  A++VYDIT +++F   + W 
Sbjct: 44  FATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKW- 102
Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196
                               +KEL+  A  NIVI L GNK+DL    R +  ++   YA+
Sbjct: 103 --------------------LKELRDNADSNIVILLVGNKSDLK-HLRVINDNDATQYAK 141
Query: 197 ENGLLFMETSAKTAMNVNEIFVEI 220
           +  L F+ETSA  A NV   F ++
Sbjct: 142 KEKLAFIETSALEATNVELAFHQL 165

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
           +K+VL+G+S VGKS+L+ RF R +F+   +STIG E
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVE 43

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 18/159 (11%)
Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           Y     A F+T+ V +DD  +  +IWDTAGQER+ +L   +YR A   ++V+D+T  +TF
Sbjct: 37  YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTF 96
Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
               SW  E    A P                   P N    + GNK D    +   + +
Sbjct: 97  KTLDSWRDEFLIQASPR-----------------DPENFPFVVLGNKIDFENRQVATKRA 139
Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
           +   Y+ +N + + ETSAK A+NV + F  IA+   K+E
Sbjct: 140 QAWCYS-KNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 22/143 (15%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+T+ +++  I+ +IWDTAG ERY  +   YYR A  A+IVYDI+   ++     W  
Sbjct: 47  FATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW-- 104
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                              + EL+  A  N+ + L GNK+DL    R V   E + +A E
Sbjct: 105 -------------------LTELRENADDNVAVGLIGNKSDLA-HLRAVPTDEAKNFAME 144
Query: 198 NGLLFMETSAKTAMNVNEIFVEI 220
           N +LF ETSA  + NV++ F E+
Sbjct: 145 NQMLFTETSALNSDNVDKAFREL 167

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 87.8 bits (216), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 18/159 (11%)
Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           Y     A F+T+ V +DD  +  +IWDTAG ER+ +L   +YR A   ++V+D+T  +TF
Sbjct: 37  YKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTF 96
Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
               SW  E    A P                   P N    + GNK DL   +   + +
Sbjct: 97  KTLDSWRDEFLIQASPR-----------------DPENFPFVVLGNKIDLENRQVATKRA 139
Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
           +   Y+ +N + + ETSAK A+NV + F  IA+   K+E
Sbjct: 140 QAWCYS-KNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +TV   D  I+ +IWDTAGQERY T+   YYR A   +++YDI NQ++F   + W  
Sbjct: 59  FKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWAT 118
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           ++            +  SW          N  + L GNK DL    R V   +G   A++
Sbjct: 119 QI------------KTYSW---------DNAQVILVGNKCDLE-DERVVPAEDGRRLADD 156
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G  F E SAK  +NV ++F  +   + +K
Sbjct: 157 LGFEFFEASAKENINVKQVFERLVDVICEK 186

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 31/157 (19%)
Query: 69  FYPYLFSAAFIT--------QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120
           F    FS ++IT        +TV ++   ++ +IWDTAGQER+ T+   YYR     I+V
Sbjct: 29  FADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 88
Query: 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP 180
           YD+T+ ++F   K W+ E+ +    N D   R                   L GNK D P
Sbjct: 89  YDVTSAESFVNVKRWLHEINQ----NCDDVCR------------------ILVGNKNDDP 126
Query: 181 TSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIF 217
             R+ VE  +   +A + G+   ETSAK  +NV E+F
Sbjct: 127 -ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+  +D  I+ +IWDTAGQERY T+   YYR A   I++YDITN+++F   + W  
Sbjct: 42  FKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWST 101
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           ++            +  SW          N  + L GNK D+    R V    G   A+ 
Sbjct: 102 QI------------KTYSW---------DNAQVLLVGNKCDME-DERVVSSERGRQLADH 139
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G  F E SAK  +NV + F  +   + +K
Sbjct: 140 LGFEFFEASAKDNINVKQTFERLVDVICEK 169

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 75/156 (48%), Gaps = 21/156 (13%)
Query: 70  YPYLFSAAFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
           Y     A F+T+ V +D D     ++WDTAGQER+ +L   +YR A   ++VYD+TN  +
Sbjct: 37  YKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS 96
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
           F   KSW  E    A  N                 +P      + GNK D   S++ V  
Sbjct: 97  FENIKSWRDEFLVHANVN-----------------SPETFPFVILGNKIDAEESKKIVSE 139
Query: 189 SEGEAYAEENGL--LFMETSAKTAMNVNEIFVEIAK 222
              +  A+  G   LF+ TSAK A+NV+  F EIA+
Sbjct: 140 KSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIAR 174

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 21/104 (20%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ LD  TI+ +IWDTAGQER+ T+   YYR A   I+VYD+T+Q++F   K W++
Sbjct: 35  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 94
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT 181
           E+ R A  N++                       L GNK DL T
Sbjct: 95  EIDRYASENVNKL---------------------LVGNKCDLTT 117

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 22/150 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +TV   +  ++ +IWDTAGQERY T+   YYR A   I++YDITN+++F   + W  
Sbjct: 60  FKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWAT 119
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           ++            +  SW          N  + L GNK D+    R V   +G+  AE+
Sbjct: 120 QI------------KTYSW---------DNAQVILVGNKCDME-EERVVPTEKGQLLAEQ 157
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G  F E SAK  ++V + F  +   +  K
Sbjct: 158 LGFDFFEASAKENISVRQAFERLVDAICDK 187

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 26/155 (16%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ +D      ++WDTAGQER+ ++A  Y+R A   +++YD+T + +F        
Sbjct: 65  FQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSF-------- 116
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----RRCVEYSEGE 192
                   NI      + WV  ++  A   + I L GNKAD+  +     ++CV    GE
Sbjct: 117 -------LNI------REWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGE 163
Query: 193 AYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
             A   G LF ETSAK   N+ E  + +A+++ K+
Sbjct: 164 KLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 65/140 (46%), Gaps = 22/140 (15%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+  +D  I+ +IWDTAG ERY T+   YYR A   I+ YDITN+++F   + W  
Sbjct: 45  FKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWST 104
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           ++            +  SW          N  + L GNK D     R V    G   A+ 
Sbjct: 105 QI------------KTYSW---------DNAQVLLVGNKCDXE-DERVVSSERGRQLADH 142
Query: 198 NGLLFMETSAKTAMNVNEIF 217
            G  F E SAK  +NV + F
Sbjct: 143 LGFEFFEASAKDNINVKQTF 162

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 28/164 (17%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           +  ++WDTAG ER+ +L   ++R+A   ++++D+T+Q +F   ++W+ +LQ         
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ--------- 120
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
              A ++ +       P+IV  L GNKADLP  R   E  +    AE+ G+ + ETSA T
Sbjct: 121 ---ANAYCEN------PDIV--LIGNKADLPDQREVNE-RQARELAEKYGIPYFETSAAT 168
Query: 210 AMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNT 253
             NV E  VE    L  K +       + VE  + P T N  N+
Sbjct: 169 GQNV-EKSVETLLDLIMKRM------EKCVEKTQVPDTVNGGNS 205

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 28/160 (17%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           +  ++WDTAGQER+ +L   ++R+A   ++++D+T+Q +F   ++W+ +LQ         
Sbjct: 84  VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ--------- 134
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
              A ++ +       P+IV  L GNKADLP  R   E  +    A++ G+ + ETSA T
Sbjct: 135 ---ANAYCEN------PDIV--LIGNKADLPDQREVNE-RQARELADKYGIPYFETSAAT 182
Query: 210 AMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSN 249
             NV E  VE    L  K +       + VE  + P T N
Sbjct: 183 GQNV-EKAVETLLDLIMKRM------EQCVEKTQIPDTVN 215

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 23/158 (14%)
Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           Y       F+ + + ++D  +R  +WDTAGQE +  +   YYR AQA ++V+  T++++F
Sbjct: 34  YKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESF 93
Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
               SW +++                 V E+      +I  AL  NK DL     C++  
Sbjct: 94  EAISSWREKV-----------------VAEV-----GDIPTALVQNKIDLLDD-SCIKNE 130
Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           E E  A+   L F  TS K  +NV+E+F  +A+K  +K
Sbjct: 131 EAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 28/158 (17%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           +  ++WDTAG ER+ +L   ++R+A   ++++D+T+Q +F   ++W+ +LQ         
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ--------- 120
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
              A ++ +       P+IV  L GNKADLP  R   E  +    AE+ G+ + ETSA T
Sbjct: 121 ---ANAYCEN------PDIV--LIGNKADLPDQREVNE-RQARELAEKYGIPYFETSAAT 168
Query: 210 AMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKT 247
             NV E  VE    L  K +       + VE  + P T
Sbjct: 169 GQNV-EKSVETLLDLIMKRM------EKCVEKTQVPDT 199

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 76/144 (52%), Gaps = 24/144 (16%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I  ++WDTAG ER+ +L   ++R+A   ++++D+TN+ +F   ++W+ +LQ  A      
Sbjct: 70  IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE--- 126
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                           P+IV  L GNK+DL   +R V+  E    AE+ G+ + ETSA  
Sbjct: 127 ---------------NPDIV--LCGNKSDLE-DQRAVKEEEARELAEKYGIPYFETSAAN 168
Query: 210 AMNVN---EIFVEIAKKLPKKEVN 230
             N++   E+ +++  K  ++ V+
Sbjct: 169 GTNISHAIEMLLDLIMKRMERSVD 192

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 28/160 (17%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           +  ++WDTAG ER+ +L   ++R+A   ++ +D+T+Q +F   ++W  +LQ         
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ--------- 120
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
              A ++ +       P+IV  L GNKADLP  R   E  +    AE+ G+ + ETSA T
Sbjct: 121 ---ANAYCEN------PDIV--LIGNKADLPDQREVNE-RQARELAEKYGIPYFETSAAT 168
Query: 210 AMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSN 249
             NV E  VE    L  K         + VE  + P T N
Sbjct: 169 GQNV-EKSVETLLDLIXKRX------EKCVEKTQVPDTVN 201

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 24/147 (16%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           +  ++WDTAG ER+ +L   ++R+A   ++ +D+T+Q +F   ++W  +LQ         
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ--------- 120
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
              A ++ +       P+IV  L GNKADLP  R   E  +    AE+ G+ + ETSA T
Sbjct: 121 ---ANAYCEN------PDIV--LIGNKADLPDQREVNE-RQARELAEKYGIPYFETSAAT 168
Query: 210 AMNVN---EIFVEIAKKLPKKEVNNGQ 233
             NV    E  +++  K  +K V   Q
Sbjct: 169 GQNVEKSVETLLDLIXKRXEKCVEKTQ 195

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 25/151 (16%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYH-TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
           F  + V +D   I+ ++WDTAGQER+  ++   YYRN  A + VYD+TN  +F    +W+
Sbjct: 57  FRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWI 116
Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196
           +E +                    Q +   +I   L GNK DL ++ + V     + +A+
Sbjct: 117 EECK--------------------QHLLANDIPRILVGNKCDLRSAIQ-VPTDLAQKFAD 155
Query: 197 ENGLLFMETSAKTAMN---VNEIFVEIAKKL 224
            + +   ETSAK   +   V  IF+ +A KL
Sbjct: 156 THSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 73/147 (49%), Gaps = 21/147 (14%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  + + +D      EI DTAG E++ ++  +Y +N Q  I+VY + NQ +F   K    
Sbjct: 39  FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIK---- 94
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                  P  D   R K + K         + + L GNK DL + R     SEG A AEE
Sbjct: 95  -------PMRDQIIRVKRYEK---------VPVILVGNKVDLESEREVSS-SEGRALAEE 137
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL 224
            G  FMETSAK+   V+E+F EI +++
Sbjct: 138 WGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 20/152 (13%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+ + + +D   +  +IWDTAGQER+ +L   +YR +   ++ + + +  +F    +W K
Sbjct: 44  FLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK 103
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E    A             VKE     P +    + GNK D+  S R V   E +A+  +
Sbjct: 104 EFIYYAD------------VKE-----PESFPFVILGNKIDI--SERQVSTEEAQAWCRD 144
Query: 198 NGLL-FMETSAKTAMNVNEIFVEIAKKLPKKE 228
           NG   + ETSAK A NV   F E  +++   E
Sbjct: 145 NGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 20/148 (13%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+ + + +D   +  +IWDTAGQER+ +L   +YR +   ++ + + +  +F    +W K
Sbjct: 46  FLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK 105
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E    A             VKE     P +    + GNK D+  S R V   E +A+  +
Sbjct: 106 EFIYYAD------------VKE-----PESFPFVILGNKIDI--SERQVSTEEAQAWCRD 146
Query: 198 NGLL-FMETSAKTAMNVNEIFVEIAKKL 224
           NG   + ETSAK A NV   F E  +++
Sbjct: 147 NGDYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 20/153 (13%)
Query: 81  QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
           + V LD   ++ +I DTAG E Y  +   Y+R+ +  ++V+ IT  ++F     + +++ 
Sbjct: 46  KKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQIL 105
Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
           R+                   +     I + + GNK+DL   RR V   E  + AEE G+
Sbjct: 106 RV-------------------KAEEDKIPLLVVGNKSDLE-ERRQVPVEEARSKAEEWGV 145
Query: 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQ 233
            ++ETSAKT  NV+++F ++ +++  K+++  +
Sbjct: 146 QYVETSAKTRANVDKVFFDLMREIRTKKMSENK 178

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 20/153 (13%)
Query: 81  QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
           + V LD   ++ +I DTAG E Y  +   Y+R+ +  ++V+ IT  ++F     + +++ 
Sbjct: 42  KKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQIL 101
Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
           R+                   +     I + + GNK+DL   RR V   E  + AEE G+
Sbjct: 102 RV-------------------KAEEDKIPLLVVGNKSDLE-ERRQVPVEEARSKAEEWGV 141
Query: 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQ 233
            ++ETSAKT  NV+++F ++ +++  K+++  +
Sbjct: 142 QYVETSAKTRANVDKVFFDLMREIRTKKMSENK 174

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 21/147 (14%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           T+   +DD   R +I DTAGQE +  +   Y R  +  ++V+ +T++ +F     + +++
Sbjct: 43  TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQI 102
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
            R+   + D F               P I+I   GNKADL   R+  +  EG+  A +  
Sbjct: 103 LRV--KDRDEF---------------PMILI---GNKADLDHQRQVTQ-EEGQQLARQLK 141
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPK 226
           + +ME SAK  MNV++ F E+ + + K
Sbjct: 142 VTYMEASAKIRMNVDQAFHELVRVIRK 168

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 25/151 (16%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYH-TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
           F  + V +D   I+ ++WDTAGQER+  ++   YYRN  A + VYD TN  +F    +W+
Sbjct: 66  FRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWI 125
Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196
           +E +                    Q +   +I   L GNK DL ++ + V     + +A+
Sbjct: 126 EECK--------------------QHLLANDIPRILVGNKCDLRSAIQ-VPTDLAQKFAD 164
Query: 197 ENGLLFMETSAKTAMN---VNEIFVEIAKKL 224
            +     ETSAK   +   V  IF  +A KL
Sbjct: 165 THSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 20/148 (13%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+ + + +D   +  +IWDTAGQER+ +L   +YR +   ++ + + +  +F    +W K
Sbjct: 48  FLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK 107
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E    A             VKE     P +    + GNK D+    R V   E +A+ ++
Sbjct: 108 EFIYYAD------------VKE-----PESFPFVILGNKTDI--KERQVSTEEAQAWCKD 148
Query: 198 NGLL-FMETSAKTAMNVNEIFVEIAKKL 224
           NG   + ETSAK + NV   F E  +++
Sbjct: 149 NGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 22/136 (16%)
Query: 92  FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
            EI DTAG E++  +  +Y +N Q   +VY IT Q TF   +   +++ R+   +     
Sbjct: 55  LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD----- 109
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-NGLLFMETSAKTA 210
                          ++ + L GNK DL    R V   +G+  A + N   F+E+SAK+ 
Sbjct: 110 ---------------DVPMILVGNKCDLE-DERVVGKEQGQNLARQWNNCAFLESSAKSK 153
Query: 211 MNVNEIFVEIAKKLPK 226
           +NVNEIF ++ +++ +
Sbjct: 154 INVNEIFYDLVRQINR 169

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 22/136 (16%)
Query: 92  FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
            EI DTAG E++  +  +Y +N Q   +VY IT Q TF   +   +++ R+   +     
Sbjct: 53  LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD----- 107
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-NGLLFMETSAKTA 210
                          ++ + L GNK DL    R V   +G+  A + N   F+E+SAK+ 
Sbjct: 108 ---------------DVPMILVGNKCDLE-DERVVGKEQGQNLARQWNNCAFLESSAKSK 151
Query: 211 MNVNEIFVEIAKKLPK 226
           +NVNEIF ++ +++ +
Sbjct: 152 INVNEIFYDLVRQINR 167

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F +WDTAGQE+Y  L   YY  AQ AII++D+T++ T+    +W ++L R+       
Sbjct: 59  IKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+ ++   +  +  L + + SAK+
Sbjct: 113 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 153
Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 154 NYNFEKPFLWLARKL 168

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F +WDTAGQE++  L   YY  AQ AII++D+T++ T+    +W ++L R+       
Sbjct: 59  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+ ++   +  +  L + + SAK+
Sbjct: 113 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 153
Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 154 NYNFEKPFLWLARKL 168

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 21/151 (13%)
Query: 81  QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
           + V LD   ++ +I DTAGQE Y  +   Y+R+ +  + V+ IT  ++F     + +++ 
Sbjct: 53  KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 112
Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
           R               VKE       N+   L GNK+DL   R+ V   E +  AE+  +
Sbjct: 113 R---------------VKE-----DENVPFLLVGNKSDLEDKRQ-VSVEEAKNRAEQWNV 151
Query: 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
            ++ETSAKT  NV+++F ++ +++  +++ +
Sbjct: 152 NYVETSAKTRANVDKVFFDLMREIRARKMED 182

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F +WDTAGQE++  L   YY  AQ AII++D+T++ T+    +W ++L R+       
Sbjct: 59  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+ ++   +  +  L + + SAK+
Sbjct: 113 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 153
Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 154 NYNFEKPFLWLARKL 168

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 21/151 (13%)
Query: 81  QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
           + V LD   ++ +I DTAGQE Y  +   Y+R+ +  + V+ IT  ++F     + +++ 
Sbjct: 57  KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 116
Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
           R               VKE       N+   L GNK+DL   +R V   E +  AE+  +
Sbjct: 117 R---------------VKE-----DENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQWNV 155
Query: 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
            ++ETSAKT  NV+++F ++ +++  +++ +
Sbjct: 156 NYVETSAKTRANVDKVFFDLMREIRARKMED 186

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 21/151 (13%)
Query: 81  QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
           + V LD   ++ +I DTAGQE Y  +   Y+R+ +  + V+ IT  ++F     + +++ 
Sbjct: 45  KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 104
Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
           R               VKE       N+   L GNK+DL   +R V   E +  AE+  +
Sbjct: 105 R---------------VKE-----DENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQWNV 143
Query: 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
            ++ETSAKT  NV+++F ++ +++  +++ +
Sbjct: 144 NYVETSAKTRANVDKVFFDLMREIRARKMED 174

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 25/135 (18%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F++WDTAG E++  L   YY NAQ AII++D+T++ T+    +W ++L R+       
Sbjct: 53  IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC------ 106
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+ ++   +  +  L + + SAK+
Sbjct: 107 ----------------ENIPIVLCGNKVDV--KERKVK-AKTITFHRKKNLQYYDISAKS 147
Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 148 NYNFEKPFLWLARKL 162

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 25/135 (18%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F++WDTAG E++  L   YY NAQ AII++D+T++ T+    +W ++L R+       
Sbjct: 54  IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC------ 107
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+ ++   +  +  L + + SAK+
Sbjct: 108 ----------------ENIPIVLCGNKVDV--KERKVK-AKTITFHRKKNLQYYDISAKS 148
Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 149 NYNFEKPFLWLARKL 163

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F +WDTAGQE++  L   YY  AQ AII++D+T++ T+    +W ++L R+       
Sbjct: 52  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 105
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+ ++   +  +  L + + SAK+
Sbjct: 106 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 146
Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 147 NYNFEKPFLWLARKL 161

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F +WDTAGQE++  L   YY  AQ AII++D+T++ T+    +W ++L R+       
Sbjct: 59  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+ ++   +  +  L + + SAK+
Sbjct: 113 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 153
Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 154 NYNFEKPFLWLARKL 168

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F +WDTAGQE++  L   YY  AQ AII++D+T++ T+    +W ++L R+       
Sbjct: 59  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+ ++   +  +  L + + SAK+
Sbjct: 113 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 153
Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 154 NYNFEKPFLWLARKL 168

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F +WDTAGQE++  L   YY  AQ AII++D+T++ T+    +W ++L R+       
Sbjct: 59  IKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+ ++   +  +  L + + SAK+
Sbjct: 113 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 153
Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 154 NYNFEKPFLWLARKL 168

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F +WDTAGQE++  L   YY  AQ AII++D+T++ T+    +W ++L R+       
Sbjct: 64  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 117
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+ ++   +  +  L + + SAK+
Sbjct: 118 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 158
Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 159 NYNFEKPFLWLARKL 173

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F +WDTAGQE++  L   YY  AQ AII++D+T++ T+    +W ++L R+       
Sbjct: 59  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+ ++   +  +  L + + SAK+
Sbjct: 113 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 153
Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 154 NYNFEKPFLWLARKL 168

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F +WDTAGQE++  L   YY  AQ AII++D+T++ T+    +W ++L R+       
Sbjct: 64  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 117
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+ ++   +  +  L + + SAK+
Sbjct: 118 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 158
Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 159 NYNFEKPFLWLARKL 173

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 25/135 (18%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F++WDTAG E++  L   YY NAQ AII++D+T++ T+    +W ++L R+       
Sbjct: 61  IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC------ 114
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+ ++   +  +  L + + SAK+
Sbjct: 115 ----------------ENIPIVLCGNKVDV--KERKVK-AKTITFHRKKNLQYYDISAKS 155
Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 156 NYNFEKPFLWLARKL 170

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 22/144 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 45  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
                                   ++ + L GNK+DLP+  R V+  + +  A   G+ F
Sbjct: 105 KDSE--------------------DVPMVLVGNKSDLPS--RTVDTKQAQDLARSYGIPF 142
Query: 203 METSAKTAMNVNEIFVEIAKKLPK 226
           +ETSAKT   V++ F  + +++ K
Sbjct: 143 IETSAKTRQGVDDAFYTLVREIRK 166

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 22/144 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 45  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
                                   ++ + L GNK+DLP+  R V+  + +  A   G+ F
Sbjct: 105 KDSE--------------------DVPMVLVGNKSDLPS--RTVDTKQAQDLARSYGIPF 142
Query: 203 METSAKTAMNVNEIFVEIAKKLPK 226
           +ETSAKT   V++ F  + +++ K
Sbjct: 143 IETSAKTRQGVDDAFYTLVREIRK 166

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 22/144 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 45  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
                                   ++ + L GNK+DLP+  R V+  + +  A   G+ F
Sbjct: 105 KDSE--------------------DVPMVLVGNKSDLPS--RTVDTKQAQDLARSYGIPF 142
Query: 203 METSAKTAMNVNEIFVEIAKKLPK 226
           +ETSAKT   V++ F  + +++ K
Sbjct: 143 IETSAKTRQGVDDAFYTLVREIRK 166

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 25/135 (18%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F +WDTAGQE++  L   YY  AQ AII +D+T++ T+    +W ++L R+       
Sbjct: 59  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVC------ 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+ ++   +  +  L + + SAK+
Sbjct: 113 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 153
Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 154 NYNFEKPFLWLARKL 168

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 22/144 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 45  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
                                   ++ + L GNK DLP+  R V+  + +  A   G+ F
Sbjct: 105 KDSE--------------------DVPMVLVGNKCDLPS--RTVDTKQAQDLARSYGIPF 142
Query: 203 METSAKTAMNVNEIFVEIAKKLPK 226
           +ETSAKT   V++ F  + +++ K
Sbjct: 143 IETSAKTRQGVDDAFYTLVREIRK 166

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 62  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRV 121
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DLPT  R V+  +    A+  G+ F
Sbjct: 122 KDSD--------------------DVPMVLVGNKCDLPT--RTVDTKQAHELAKSYGIPF 159
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 160 IETSAKTRQGVEDAFYTLVREI 181

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 21/144 (14%)
Query: 81  QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
           + V LD   ++ +I DTAGQE Y  +   Y+R+ +  + V+ IT  ++F     + +++ 
Sbjct: 43  KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 102
Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
           R               VKE       N+   L GNK+DL   +R V   E +  A++  +
Sbjct: 103 R---------------VKE-----DENVPFLLVGNKSDLE-DKRQVSVEEAKNRADQWNV 141
Query: 201 LFMETSAKTAMNVNEIFVEIAKKL 224
            ++ETSAKT  NV+++F ++ +++
Sbjct: 142 NYVETSAKTRANVDKVFFDLMREI 165

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 25/135 (18%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F +WDTAG E++  L   YY  AQ AII++D+T++ T+    +W ++L R+       
Sbjct: 55  IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 108
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+ ++   +  +  L + + SAK+
Sbjct: 109 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 149
Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 150 NYNFEKPFLWLARKL 164

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 25/135 (18%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F +WDTAG E++  L   YY  AQ AII++D+T++ T+    +W ++L R+       
Sbjct: 61  IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 114
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+ ++   +  +  L + + SAK+
Sbjct: 115 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 155
Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 156 NYNFEKPFLWLARKL 170

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 21/151 (13%)
Query: 81  QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
           + V LD   ++ +I DTAG E Y  +   Y+R+ +  + V+ IT  ++F     + +++ 
Sbjct: 45  KKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 104
Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
           R               VKE       N+   L GNK+DL   +R V   E +  AE+  +
Sbjct: 105 R---------------VKE-----DENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQWNV 143
Query: 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
            ++ETSAKT  NV+++F ++ +++  +++ +
Sbjct: 144 NYVETSAKTRANVDKVFFDLMREIRARKMED 174

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 22/136 (16%)
Query: 92  FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
            EI DTAG E++  +  +Y +N Q   +VY IT Q TF   +   +++ R+         
Sbjct: 53  LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD------- 105
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-NGLLFMETSAKTA 210
                          ++ + L GNK DL    R V   +G+  A +     F+E+SAK+ 
Sbjct: 106 -------------TEDVPMILVGNKCDLE-DERVVGKEQGQNLARQWCNCAFLESSAKSK 151
Query: 211 MNVNEIFVEIAKKLPK 226
           +NVNEIF ++ +++ +
Sbjct: 152 INVNEIFYDLVRQINR 167

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 22/136 (16%)
Query: 92  FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
            EI DTAG E++  +  +Y +N Q   +VY IT Q TF   +   +++ R+         
Sbjct: 53  LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD------- 105
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-NGLLFMETSAKTA 210
                          ++ + L GNK DL    R V   +G+  A +     F+E+SAK+ 
Sbjct: 106 -------------TEDVPMILVGNKCDLE-DERVVGKEQGQNLARQWCNCAFLESSAKSK 151
Query: 211 MNVNEIFVEIAKKLPK 226
           +NVNEIF ++ +++ +
Sbjct: 152 INVNEIFYDLVRQINR 167

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 25/135 (18%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F +WDTAG E++  L   YY  AQ AII++D+T++ T+    +W ++L R+       
Sbjct: 59  IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            NI I L GNK D+    R V+ ++   +  +  L + + SAK+
Sbjct: 113 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 153
Query: 210 AMNVNEIFVEIAKKL 224
             N  + F+ +A+KL
Sbjct: 154 NYNFEKPFLWLARKL 168

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 20/148 (13%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+ + + +D   +  +IWDTAGQER+ +L   +YR A   ++ + + ++ +F    +W K
Sbjct: 44  FLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQK 103
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E    A             VK+     P +    + GNK D     R V   E + +  E
Sbjct: 104 EFIYYAD------------VKD-----PEHFPFVVLGNKVD--KEDRQVTTEEAQTWCME 144
Query: 198 NGLL-FMETSAKTAMNVNEIFVEIAKKL 224
           NG   ++ETSAK   NV   F E  +++
Sbjct: 145 NGDYPYLETSAKDDTNVTVAFEEAVRQV 172

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 22/144 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAG E Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 62  VVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 121
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
                                   ++ + L GNK DLP+  R V+  + +  A   G+ F
Sbjct: 122 KDSE--------------------DVPMVLVGNKCDLPS--RTVDTKQAQDLARSYGIPF 159
Query: 203 METSAKTAMNVNEIFVEIAKKLPK 226
           +ETSAKT   V++ F  + +++ K
Sbjct: 160 IETSAKTRQGVDDAFYTLVREIRK 183

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 23/144 (15%)
Query: 85  LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144
           +DD  +  EI DTAGQE        + R  +  ++VYDIT++ +F          + + P
Sbjct: 71  IDDEVVSMEILDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSF----------EEVLP 119
Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFME 204
                    K+ + E+++  P N+ + L GNKADL  SR+ V   EGE  A E    F E
Sbjct: 120 --------LKNILDEIKK--PKNVTLILVGNKADLDHSRQ-VSTEEGEKLATELACAFYE 168
Query: 205 TSAKTAM-NVNEIFVEIAKKLPKK 227
            SA T   N+ EIF E+ +++ ++
Sbjct: 169 CSACTGEGNITEIFYELCREVRRR 192

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           T+   +D +  R +I DTAGQE +  +   Y R     ++V+ I ++ +F        ++
Sbjct: 47  TKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQI 106
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
            R+   + D F                   + L GNKADL  S+R V  SE  A+   + 
Sbjct: 107 LRVK--DRDDFP------------------VVLVGNKADL-ESQRQVPRSEASAFGASHH 145
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPK 226
           + + E SAK  +NV+E F ++ + + K
Sbjct: 146 VAYFEASAKLRLNVDEAFEQLVRAVRK 172

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 40/194 (20%)
Query: 59  CMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118
           C T       + P +F     +  V +D   +   +WDTAGQE Y  L P+ YR A   +
Sbjct: 28  CYTSNKFPTDYIPTVFDN--FSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85
Query: 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178
           + + + ++ ++                        K W+ EL+R A PN+ I L G K D
Sbjct: 86  LAFSLISKASYENV--------------------LKKWMPELRRFA-PNVPIVLVGTKLD 124
Query: 179 LPTSR-------RCVEYSEGEAYAEENG-LLFMETSAKTAMNVNEIF---VEIA------ 221
           L   +         +  ++GE   ++ G   ++E S+KT  NV  +F   +++       
Sbjct: 125 LRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 184
Query: 222 KKLPKKEVNNGQGG 235
           K++P++  N+ + G
Sbjct: 185 KEVPRRRKNHRRSG 198

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 33/159 (20%)
Query: 69  FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
           + P +F     +  V +D  T+   +WDTAGQE Y+ L P+ YR A   ++ + + ++ +
Sbjct: 35  YVPTVFDN--FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS 92
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
           +                NI      K W+ EL+  A P I I L G K DL   ++ ++ 
Sbjct: 93  Y---------------ENIH-----KKWLPELKHYA-PGIPIVLVGTKLDLRDDKQFLKD 131
Query: 189 SEGEAY-----AEE-----NGLLFMETSAKTAMNVNEIF 217
             G A       EE       + ++E S+KT  NV  +F
Sbjct: 132 HPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK+DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKSDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL  + R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 31/148 (20%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D  T+   +WDTAGQE Y+ L P+ YR A   I+ + + ++ ++          
Sbjct: 44  SANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV------- 96
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC---------VEYSE 190
                        AK W+ EL+  A P + I L G K DL   ++          +  ++
Sbjct: 97  -------------AKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQ 142
Query: 191 GEAYAEENGL-LFMETSAKTAMNVNEIF 217
           GE   +  G  +++E S+KT  NV  +F
Sbjct: 143 GEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 51  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 110
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 111 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 148
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 149 IETSAKTRQGVEDAFYTLVREI 170

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL  + R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDL--AGRTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 49  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 109 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 146
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 147 IETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 49  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 109 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 146
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 147 IETSAKTRQGVEDAFYTLVREI 168

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 22/147 (14%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKLPKKEV 229
           +ETSAKT   V + F  + +++ + ++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREIRQHKL 168

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 22/147 (14%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKLPKKEV 229
           +ETSAKT   V + F  + +++ + ++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREIRQHKL 168

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 50  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 109
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 110 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 147
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 148 IETSAKTRQGVEDAFYTLVREI 169

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + ++ 
Sbjct: 142 IETSAKTRQGVEDAFYTLVREF 163

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 34/145 (23%)
Query: 85  LDDV--TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           LDD    I+F +WDTAGQE+   L  +YY  A  AI+ +D+T++ T           Q +
Sbjct: 54  LDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRIT----------CQNL 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR-----CVEYSEGEAYAEE 197
           A            WVKE Q +      I +  NK D+   ++      +E  +G+ Y   
Sbjct: 104 A-----------RWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE-- 150
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAK 222
               + E SAKTA N    F+ +A+
Sbjct: 151 ----YFEISAKTAHNFGLPFLHLAR 171

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GN+ DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNRCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DT GQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DT GQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAG+E Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAG E Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 21/157 (13%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           ++ V L        + DTAGQ+ Y  L   +       ++VY +T+  +F   +S  ++L
Sbjct: 62  SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKL 121
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
                      G  K+ V            + L GNKADL   R  V+  EG+  AE  G
Sbjct: 122 HE---------GHGKTRVP-----------VVLVGNKADLSPERE-VQAVEGKKLAESWG 160
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGR 236
             FME+SA+       IF ++ +++ + E + GQ  R
Sbjct: 161 ATFMESSARENQLTQGIFTKVIQEIARVENSYGQERR 197

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D      +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 43/183 (23%)
Query: 47  CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
           C+  ++ KD+     ++ +  VF  Y+         + +D   +   +WDTAGQE Y  L
Sbjct: 22  CLLIVFSKDQ---FPEVYVPTVFENYV-------ADIEVDGKQVELALWDTAGQEDYDRL 71
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
            P+ Y +    ++ + I + D+                 NI      + W  E++    P
Sbjct: 72  RPLSYPDTDVILMCFSIDSPDSL---------------ENI-----PEKWTPEVKHFC-P 110
Query: 167 NIVIALAGNKADLPT---SRR--------CVEYSEGEAYAEENGLL-FMETSAKTAMNVN 214
           N+ I L GNK DL     +RR         V+  EG   A   G   +ME SAKT   V 
Sbjct: 111 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 170
Query: 215 EIF 217
           E+F
Sbjct: 171 EVF 173

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 43/183 (23%)
Query: 47  CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
           C+  ++ KD+     ++ +  VF  Y+         + +D   +   +WDTAGQE Y  L
Sbjct: 22  CLLIVFSKDQ---FPEVYVPTVFENYV-------ADIEVDGKQVELALWDTAGQEDYDRL 71
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
            P+ Y +    ++ + I + D+                 NI      + W  E++    P
Sbjct: 72  RPLSYPDTDVILMCFSIDSPDSL---------------ENI-----PEKWTPEVKHFC-P 110
Query: 167 NIVIALAGNKADLPT---SRR--------CVEYSEGEAYAEENGLL-FMETSAKTAMNVN 214
           N+ I L GNK DL     +RR         V+  EG   A   G   +ME SAKT   V 
Sbjct: 111 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 170
Query: 215 EIF 217
           E+F
Sbjct: 171 EVF 173

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTA QE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKXDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTA QE Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKXDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAG E Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 49  VVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 109 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 146
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 147 IETSAKTRQGVEDAFYTLVREI 168

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 43/183 (23%)
Query: 47  CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
           C+  ++ KD+     ++ +  VF  Y+         + +D   +   +WDTAGQE Y  L
Sbjct: 23  CLLIVFSKDQ---FPEVYVPTVFENYV-------ADIEVDGKQVELALWDTAGQEDYDRL 72
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
            P+ Y +    ++ + I + D+                 NI      + W  E++    P
Sbjct: 73  RPLSYPDTDVILMCFSIDSPDSL---------------ENI-----PEKWTPEVKHFC-P 111
Query: 167 NIVIALAGNKADLPT---SRR--------CVEYSEGEAYAEENGLL-FMETSAKTAMNVN 214
           N+ I L GNK DL     +RR         V+  EG   A   G   +ME SAKT   V 
Sbjct: 112 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 171
Query: 215 EIF 217
           E+F
Sbjct: 172 EVF 174

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAG E Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAG E Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 43/183 (23%)
Query: 47  CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
           C+  ++ KD+     ++ +  VF  Y+         + +D   +   +WDTAGQE Y  L
Sbjct: 20  CLLIVFSKDQ---FPEVYVPTVFENYV-------ADIEVDGKQVELALWDTAGQEDYDRL 69
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
            P+ Y +    ++ + I + D+                 NI      + W  E++    P
Sbjct: 70  RPLSYPDTDVILMCFSIDSPDSL---------------ENI-----PEKWTPEVKHFC-P 108
Query: 167 NIVIALAGNKADLPT---SRR--------CVEYSEGEAYAEENGLL-FMETSAKTAMNVN 214
           N+ I L GNK DL     +RR         V+  EG   A   G   +ME SAKT   V 
Sbjct: 109 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 168
Query: 215 EIF 217
           E+F
Sbjct: 169 EVF 171

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 43/183 (23%)
Query: 47  CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
           C+  ++ KD+     ++ +  VF  Y+         + +D   +   +WDTAGQE Y  L
Sbjct: 24  CLLIVFSKDQ---FPEVYVPTVFENYV-------ADIEVDGKQVELALWDTAGQEDYDRL 73
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
            P+ Y +    ++ + I + D+                 NI      + W  E++    P
Sbjct: 74  RPLSYPDTDVILMCFSIDSPDSLE---------------NI-----PEKWTPEVKHFC-P 112
Query: 167 NIVIALAGNKADLPT---SRR--------CVEYSEGEAYAEENGLL-FMETSAKTAMNVN 214
           N+ I L GNK DL     +RR         V+  EG   A   G   +ME SAKT   V 
Sbjct: 113 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 172
Query: 215 EIF 217
           E+F
Sbjct: 173 EVF 175

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 43/183 (23%)
Query: 47  CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
           C+  ++ KD+     ++ +  VF  Y+         + +D   +   +WDTAGQE Y  L
Sbjct: 22  CLLIVFSKDQ---FPEVYVPTVFENYV-------ADIEVDGKQVELALWDTAGQEDYDRL 71
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
            P+ Y +    ++ + I + D+                 NI      + W  E++    P
Sbjct: 72  RPLSYPDTDVILMCFSIDSPDSL---------------ENI-----PEKWTPEVKHFC-P 110
Query: 167 NIVIALAGNKADLPT---SRR--------CVEYSEGEAYAEENGLL-FMETSAKTAMNVN 214
           N+ I L GNK DL     +RR         V+  EG   A   G   +ME SAKT   V 
Sbjct: 111 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 170
Query: 215 EIF 217
           E+F
Sbjct: 171 EVF 173

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAG E Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 43/183 (23%)
Query: 47  CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
           C+  ++ KD+     ++ +  VF  Y+         + +D   +   +WDTAGQE Y  L
Sbjct: 21  CLLIVFSKDQ---FPEVYVPTVFENYV-------ADIEVDGKQVELALWDTAGQEDYDRL 70
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
            P+ Y +    ++ + I + D+                 NI      + W  E++    P
Sbjct: 71  RPLSYPDTDVILMCFSIDSPDSL---------------ENI-----PEKWTPEVKHFC-P 109
Query: 167 NIVIALAGNKADLPT---SRR--------CVEYSEGEAYAEENGLL-FMETSAKTAMNVN 214
           N+ I L GNK DL     +RR         V+  EG   A   G   +ME SAKT   V 
Sbjct: 110 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 169
Query: 215 EIF 217
           E+F
Sbjct: 170 EVF 172

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAG E Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 43/183 (23%)
Query: 47  CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
           C+  ++ KD+     ++ +  VF  Y+         + +D   +   +WDTAGQE Y  L
Sbjct: 21  CLLIVFSKDQ---FPEVYVPTVFENYV-------ADIEVDGKQVELALWDTAGQEDYDRL 70
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
            P+ Y +    ++ + I + D+                 NI      + W  E++    P
Sbjct: 71  RPLSYPDTDVILMCFSIDSPDSLE---------------NI-----PEKWTPEVKHFC-P 109
Query: 167 NIVIALAGNKADLPT---SRR--------CVEYSEGEAYAEENGLL-FMETSAKTAMNVN 214
           N+ I L GNK DL     +RR         V+  EG   A   G   +ME SAKT   V 
Sbjct: 110 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 169
Query: 215 EIF 217
           E+F
Sbjct: 170 EVF 172

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 35/162 (21%)
Query: 68  VFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
           V+ P +F        + +D   +   +WDTAGQE Y  L P+ Y +    ++ + I + D
Sbjct: 33  VYVPTVFEN--YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD 90
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT---SRR 184
           +                 NI      + W  E++    PN+ I L GNK DL     +RR
Sbjct: 91  SL---------------ENI-----PEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 129
Query: 185 --------CVEYSEGEAYAEENGLL-FMETSAKTAMNVNEIF 217
                    V+  EG   A   G   +ME SAKT   V E+F
Sbjct: 130 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 35/162 (21%)
Query: 68  VFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
           V+ P +F        + +D   +   +WDTAGQE Y  L P+ Y +    ++ + I + D
Sbjct: 33  VYVPTVFEN--YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD 90
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT---SRR 184
           +                 NI      + W  E++    PN+ I L GNK DL     +RR
Sbjct: 91  SL---------------ENI-----PEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 129
Query: 185 --------CVEYSEGEAYAEENGLL-FMETSAKTAMNVNEIF 217
                    V+  EG   A   G   +ME SAKT   V E+F
Sbjct: 130 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAG E Y  +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D  T   +I DTAGQE    +   Y R  +  + V+ I N  +F     + ++++R+
Sbjct: 44  VVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
              +                    ++ + L GNK DL    R VE  + +  A   G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
           +ETSAKT   V + F  + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 43/183 (23%)
Query: 47  CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
           C+  ++ KD+     ++ +  VF  Y+         + +D   +   +WDTAGQE Y  L
Sbjct: 40  CLLIVFSKDQ---FPEVYVPTVFENYI-------ADIEVDGKQVELALWDTAGQEDYDRL 89
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
            P+ Y +    ++ + I + D+                 NI      + W  E++    P
Sbjct: 90  RPLSYPDTDVILMCFSIDSPDSL---------------ENI-----PEKWTPEVKHFX-P 128
Query: 167 NIVIALAGNKADL---PTSRRCVEYSEGEAYAEENG---------LLFMETSAKTAMNVN 214
           N+ I L GNK DL     +RR +   + E    E G           ++E SAKT   V 
Sbjct: 129 NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVR 188
Query: 215 EIF 217
           E+F
Sbjct: 189 EVF 191

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 35/162 (21%)
Query: 68  VFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
           V+ P +F        + +D   +   +WDTAGQE Y  L P+ Y +    ++ + I + D
Sbjct: 31  VYVPTVFEN--YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD 88
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT---SRR 184
           +                 NI      + W  E++    PN+ I L GNK DL     +RR
Sbjct: 89  SLE---------------NI-----PEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 127
Query: 185 --------CVEYSEGEAYAEENGLL-FMETSAKTAMNVNEIF 217
                    V+  EG   A   G   +ME SAKT   V E+F
Sbjct: 128 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 35/162 (21%)
Query: 68  VFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
           V+ P +F        + +D   +   +WDTAGQE Y  L P+ Y +    ++ + I + D
Sbjct: 33  VYVPTVFEN--YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD 90
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT---SRR 184
           +                 NI      + W  E++    PN+ I L GNK DL     +RR
Sbjct: 91  SLE---------------NI-----PEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 129
Query: 185 --------CVEYSEGEAYAEENGLL-FMETSAKTAMNVNEIF 217
                    V+  EG   A   G   +ME SAKT   V E+F
Sbjct: 130 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 35/162 (21%)
Query: 68  VFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
           V+ P +F        + +D   +   +WDTAGQE Y  L P+ Y +    ++ + I + D
Sbjct: 31  VYVPTVFEN--YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD 88
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT---SRR 184
           +                 NI      + W  E++    PN+ I L GNK DL     +RR
Sbjct: 89  SLE---------------NI-----PEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 127
Query: 185 --------CVEYSEGEAYAEENGLL-FMETSAKTAMNVNEIF 217
                    V+  EG   A   G   +ME SAKT   V E+F
Sbjct: 128 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 43/183 (23%)
Query: 47  CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
           C+  ++ KD+     ++ +  VF  Y+         + +D   +   +WDTAGQE Y  L
Sbjct: 40  CLLIVFSKDQ---FPEVYVPTVFENYI-------ADIEVDGKQVELALWDTAGQEDYDRL 89
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
            P+ Y +    ++ + I + D+                 NI      + W  E++    P
Sbjct: 90  RPLSYPDTDVILMCFSIDSPDSL---------------ENI-----PEKWTPEVKHFC-P 128
Query: 167 NIVIALAGNKADL---PTSRRCVEYSEGEAYAEENG---------LLFMETSAKTAMNVN 214
           N+ I L GNK DL     +RR +   + E    E G           ++E SAKT   V 
Sbjct: 129 NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVR 188
Query: 215 EIF 217
           E+F
Sbjct: 189 EVF 191

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+ +     ++ +  +IWD  GQ     +   Y   AQ  ++VYDITN  +F   + W  
Sbjct: 44  FLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWY- 102
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                            + VK++   +    ++AL GNK DL    R ++  +   + +E
Sbjct: 103 -----------------TVVKKVSEESETQPLVALVGNKIDLE-HMRTIKPEKHLRFCQE 144
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN 230
           NG      SAKT  +V   F ++A ++   ++N
Sbjct: 145 NGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLN 177

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 31/148 (20%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V ++  T+   +WDTAGQE Y+ L P+ YR A   I+ + + ++ ++          
Sbjct: 46  SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV------- 98
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC---------VEYSE 190
                        +K W+ EL+  A P + I L G K DL   ++          +   +
Sbjct: 99  -------------SKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQ 144
Query: 191 GEAYAEENGL-LFMETSAKTAMNVNEIF 217
           GE   +  G   ++E S+K+  NV  +F
Sbjct: 145 GEELKKLIGAPAYIECSSKSQENVKGVF 172

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 35/162 (21%)
Query: 68  VFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
           V+ P +F   +I   + +D   +   +WDTAGQE Y  L P+ Y +    ++ + I + D
Sbjct: 33  VYVPTVFEN-YIAD-IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD 90
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL---PTSRR 184
           +                 NI      + W  E++    PN+ I L GNK DL     +RR
Sbjct: 91  SL---------------ENI-----PEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRR 129
Query: 185 CVEYSEGEAYAEENG---------LLFMETSAKTAMNVNEIF 217
            +   + E    E G           ++E SAKT   V E+F
Sbjct: 130 ELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 21/146 (14%)
Query: 79  ITQTVCLDDVTIRFEIW--DTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
           +   V + D T+  E++  DTAG + Y      Y+     AI+V+D+++ ++F   K+W 
Sbjct: 60  VVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF 119
Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196
            EL + A P+ +   RA                  L  NK DLP  R  V     + +A 
Sbjct: 120 -ELLKSARPDRERPLRA-----------------VLVANKTDLPPQRHQVRLDMAQDWAT 161
Query: 197 ENGLLFMETSAK-TAMNVNEIFVEIA 221
            N L F + SA     + +  F+ IA
Sbjct: 162 TNTLDFFDVSANPPGKDADAPFLSIA 187

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 40/170 (23%)
Query: 67  VVFYPYLFSAAFI-------TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119
           +VF    F A ++          + +D   +   +WDTAGQE Y    P+ Y +    ++
Sbjct: 23  IVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRARPLSYPDTDVILM 82
Query: 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179
            + I + D+                 NI      + W  E++    PN+ I L GNK DL
Sbjct: 83  CFSIDSPDSLE---------------NI-----PEKWTPEVKHFC-PNVPIILVGNKKDL 121
Query: 180 ----PTSRRC-------VEYSEGEAYAEENGLL-FMETSAKTAMNVNEIF 217
                T+R         V+ +EG   A   G   +ME SAKT   V E+F
Sbjct: 122 RNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ Y     ++I + + +  +F          
Sbjct: 45  SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENV------- 97
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    PN  I L G K DL   +  +E           Y
Sbjct: 98  ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 143
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            +G A A+E G + ++E SA T   +  +F E
Sbjct: 144 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 175

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ Y     ++I + + +  +F          
Sbjct: 41  SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    PN  I L G K DL   +  +E           Y
Sbjct: 94  ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            +G A A+E G + ++E SA T   +  +F E
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ Y     ++I + + +  +F          
Sbjct: 43  SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENV------- 95
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    PN  I L G K DL   +  +E           Y
Sbjct: 96  ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 141
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            +G A A+E G + ++E SA T   +  +F E
Sbjct: 142 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 81  QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
           Q +  D      +I DT G  ++  +  +      A I+VY IT++ +       ++EL+
Sbjct: 42  QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQS-------LEELK 94
Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
            +     +  G  +S            I I L GNK D   SR  V+ SE EA A     
Sbjct: 95  PIYEQICEIKGDVES------------IPIMLVGNKCDESPSRE-VQSSEAEALARTWKC 141
Query: 201 LFMETSAKTAMNVNEIFVEI 220
            FMETSAK   NV E+F E+
Sbjct: 142 AFMETSAKLNHNVKELFQEL 161

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ Y     ++I + + +  +F          
Sbjct: 41  SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    PN  I L G K DL   +  +E           Y
Sbjct: 94  ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            +G A A+E G + ++E SA T   +  +F E
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 33/145 (22%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           +   IWDTAGQ+ Y  L P++Y +A   ++ +D+T+ ++F                  + 
Sbjct: 82  VHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFD-----------------NI 124
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------YSEGEAYAEEN 198
           F R   W  E+       + I + G K DL   +  V            Y  G+  A   
Sbjct: 125 FNR---WYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV 180
Query: 199 G-LLFMETSAKTAMNVNEIFVEIAK 222
           G + ++E SA+   NV+ +F E A+
Sbjct: 181 GAVAYLECSARLHDNVHAVFQEAAE 205

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 66/162 (40%), Gaps = 35/162 (21%)
Query: 68  VFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
           V+ P +F        + +D   +   +WDTAG E Y  L P+ Y +    ++ + I + D
Sbjct: 36  VYVPTVFEN--YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD 93
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT---SRR 184
           +                 NI      + W  E++    PN+ I L GNK DL     +RR
Sbjct: 94  SLE---------------NI-----PEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 132
Query: 185 --------CVEYSEGEAYAEENGLL-FMETSAKTAMNVNEIF 217
                    V+  EG   A   G   +ME SAKT   V E+F
Sbjct: 133 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 21/155 (13%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           T+ + ++      ++ DTAGQ+ Y      Y  +    I+VY +T+  +F   K    +L
Sbjct: 44  TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 103
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
                  +D  G+ +             I I L GNK DL    R + Y EG+A AE   
Sbjct: 104 -------LDMVGKVQ-------------IPIMLVGNKKDLHM-ERVISYEEGKALAESWN 142
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG 234
             F+E+SAK      ++F  I  +  K +    QG
Sbjct: 143 AAFLESSAKENQTAVDVFRRIILEAEKMDGACSQG 177

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ Y      +I + + +  +F          
Sbjct: 41  SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    PN  I L G K DL   +  +E           Y
Sbjct: 94  ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            +G A A+E G + ++E SA T   +  +F E
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           T+ + ++      ++ DTAGQ+ Y      Y  +    I+VY +T+  +F   K    +L
Sbjct: 44  TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 103
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
                  +D  G+ +             I I L GNK DL    R + Y EG+A AE   
Sbjct: 104 -------LDMVGKVQ-------------IPIMLVGNKKDLHM-ERVISYEEGKALAESWN 142
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
             F+E+SAK      ++F  I  +  K E
Sbjct: 143 AAFLESSAKENQTAVDVFRRIILEAEKLE 171

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ Y      +I + + +  +F          
Sbjct: 41  SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    PN  I L G K DL   +  +E           Y
Sbjct: 94  ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            +G A A+E G + ++E SA T   +  +F E
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 22/156 (14%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS----W 135
           +  V +D   +   +WDTAGQE Y  L P+ Y          DIT++   G+ K     +
Sbjct: 43  SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSR---GKDKPIADVF 99
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-------- 187
           +     ++P + +   RAK W  E++    PN  I L G K DL   +  +E        
Sbjct: 100 LICFSLVSPASFENV-RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLT 156
Query: 188 ---YSEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
              Y +G A A+E G + ++E SA T   +  +F E
Sbjct: 157 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 192

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ Y      +I + + +  +F          
Sbjct: 68  SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 120
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    PN  I L G K DL   +  +E           Y
Sbjct: 121 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 166
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            +G A A+E G + ++E SA T   +  +F E
Sbjct: 167 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ Y      +I + + +  +F          
Sbjct: 48  SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 100
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    PN  I L G K DL   +  +E           Y
Sbjct: 101 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 146
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            +G A A+E G + ++E SA T   +  +F E
Sbjct: 147 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 178

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ Y      +I + + +  +F          
Sbjct: 68  SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 120
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    PN  I L G K DL   +  +E           Y
Sbjct: 121 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 166
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            +G A A+E G + ++E SA T   +  +F E
Sbjct: 167 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 43/183 (23%)
Query: 47  CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
           C+  ++ KD      ++ +  VF  Y+         + +D   +   +WDTAGQE Y  L
Sbjct: 40  CLLIVFSKDE---FPEVYVPTVFENYV-------ADIEVDGKQVELALWDTAGQEDYDRL 89
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
            P+ Y +    ++ + + + D+                 NI      + WV E++    P
Sbjct: 90  RPLSYPDTDVILMCFSVDSPDSL---------------ENI-----PEKWVPEVKHFC-P 128
Query: 167 NIVIALAGNKADLPTSRRC-----------VEYSEGEAYAEE-NGLLFMETSAKTAMNVN 214
           N+ I L  NK DL +               V   +G A A       ++E SAKT   V 
Sbjct: 129 NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVR 188
Query: 215 EIF 217
           E+F
Sbjct: 189 EVF 191

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 33/149 (22%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D   +   +WDTAGQE Y  L P+ Y      +I + + +  +F             
Sbjct: 63  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV---------- 112
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------YSEG 191
                    RAK W  E++    PN  I L G K DL   +  +E           Y +G
Sbjct: 113 ---------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 161
Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            A A+E G + ++E SA T   +  +F E
Sbjct: 162 LAMAKEIGAVKYLECSALTQRGLKTVFDE 190

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ Y      +I + + +  +F          
Sbjct: 41  SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    PN  I L G K DL   +  +E           Y
Sbjct: 94  ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            +G A A+E G + ++E SA T   +  +F E
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ Y      +I + + +  +F          
Sbjct: 41  SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    PN  I L G K DL   +  +E           Y
Sbjct: 94  ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            +G A A+E G + ++E SA T   +  +F E
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 33/159 (20%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ Y      +I + + +  +F          
Sbjct: 41  SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    PN  I L G K DL   +  +E           Y
Sbjct: 94  ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVEIAKKLPK 226
            +G A A+E G + ++E SA T   +  +F E  + + K
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ Y      +I + + +  +F          
Sbjct: 41  SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    PN  I L G K DL   +  +E           Y
Sbjct: 94  ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            +G A A+E G + ++E SA T   +  +F E
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 40/165 (24%)
Query: 74  FSAAFI-------TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ 126
           FS  +I       +  V +D   +   +WDTAGQE Y  L P+ Y      +I + + + 
Sbjct: 38  FSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 97
Query: 127 DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV 186
            +F                      RAK W  E+ R   PN  I L G K DL   +  +
Sbjct: 98  ASFENV-------------------RAK-WYPEV-RHHCPNTPIILVGTKLDLRDDKDTI 136
Query: 187 E-----------YSEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
           E           Y +G A A+E G + ++E SA T   +  +F E
Sbjct: 137 EKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 181

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 21/141 (14%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           T+ + ++      ++ DTAGQ+ Y      Y  +    I+VY +T+  +F   K    +L
Sbjct: 42  TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 101
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
                  +D  G+ +             I I L GNK DL    R + Y EG+A AE   
Sbjct: 102 -------LDMVGKVQ-------------IPIMLVGNKKDLHM-ERVISYEEGKALAESWN 140
Query: 200 LLFMETSAKTAMNVNEIFVEI 220
             F+E+SAK      ++F  I
Sbjct: 141 AAFLESSAKENQTAVDVFRRI 161

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 41/173 (23%)
Query: 58  DCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117
           DC  +  +  VF  Y  S    TQ        I   +WDT+G   Y  + P+ Y ++ A 
Sbjct: 51  DCFPENYVPTVFENYTASFEIDTQR-------IELSLWDTSGSPYYDNVRPLSYPDSDAV 103
Query: 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKA 177
           +I +DI+  +T                         K W  E+Q    PN  + L G K+
Sbjct: 104 LICFDISRPETLDSV--------------------LKKWKGEIQEFC-PNTKMLLVGCKS 142
Query: 178 DLPTS-----------RRCVEYSEGEAYAEENG-LLFMETSAKTAMN-VNEIF 217
           DL T            +  V Y +G   A++ G   ++E SA  + N V +IF
Sbjct: 143 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 21/141 (14%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           T+ + ++      ++ DTAGQ+ Y      Y  +    I+VY +T+  +F   K    +L
Sbjct: 39  TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 98
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
                  +D  G+ +             I I L GNK DL    R + Y EG+A AE   
Sbjct: 99  -------LDMVGKVQ-------------IPIMLVGNKKDLHM-ERVISYEEGKALAESWN 137
Query: 200 LLFMETSAKTAMNVNEIFVEI 220
             F+E+SAK      ++F  I
Sbjct: 138 AAFLESSAKENQTAVDVFRRI 158

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 41/173 (23%)
Query: 58  DCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117
           DC  +  +  VF  Y  S    TQ        I   +WDT+G   Y  + P+ Y ++ A 
Sbjct: 46  DCFPENYVPTVFENYTASFEIDTQR-------IELSLWDTSGSPYYDNVRPLSYPDSDAV 98
Query: 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKA 177
           +I +DI+  +T                         K W  E+Q    PN  + L G K+
Sbjct: 99  LICFDISRPETLDSV--------------------LKKWKGEIQEFC-PNTKMLLVGCKS 137
Query: 178 DLPTS-----------RRCVEYSEGEAYAEENG-LLFMETSAKTAMN-VNEIF 217
           DL T            +  V Y +G   A++ G   ++E SA  + N V +IF
Sbjct: 138 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 190

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 41/173 (23%)
Query: 58  DCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117
           DC  +  +  VF  Y  S    TQ        I   +WDT+G   Y  + P+ Y ++ A 
Sbjct: 30  DCFPENYVPTVFENYTASFEIDTQR-------IELSLWDTSGSPYYDNVRPLSYPDSDAV 82
Query: 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKA 177
           +I +DI+  +T                         K W  E+Q    PN  + L G K+
Sbjct: 83  LICFDISRPETLDSV--------------------LKKWKGEIQEFC-PNTKMLLVGCKS 121
Query: 178 DLPTS-----------RRCVEYSEGEAYAEENG-LLFMETSAKTAMN-VNEIF 217
           DL T            +  V Y +G   A++ G   ++E SA  + N V +IF
Sbjct: 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 35/162 (21%)
Query: 68  VFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
           V+ P +F        V +D   +   +WDTAGQE Y  L P+ Y ++   +I + I   D
Sbjct: 38  VYVPTVFEN--YVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPD 95
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE 187
           +    +                    + W+ E+       + I L G K DL    + +E
Sbjct: 96  SLENVQ--------------------EKWIAEVLHFC-QGVPIILVGCKVDLRNDPQTIE 134
Query: 188 Y-----------SEGEAYAEENGLL-FMETSAKTAMNVNEIF 217
                        EG++ A++ G   + E SAKT   V E+F
Sbjct: 135 QLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 22/132 (16%)
Query: 92  FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
            ++ DTAGQE +  +   Y R     +IVY +T++ +F                ++D F 
Sbjct: 68  LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFE---------------HVDRFH 112
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT-A 210
           +    VK+  R + P I++A   NK DL    R V   +G+  A +  + ++ETSAK   
Sbjct: 113 QLILRVKD--RESFPMILVA---NKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPP 166
Query: 211 MNVNEIFVEIAK 222
           +NV++ F ++ +
Sbjct: 167 LNVDKTFHDLVR 178

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAG E Y  L P+ Y      +I + + +  +F          
Sbjct: 41  SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    PN  I L G K DL   +  +E           Y
Sbjct: 94  ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            +G A A+E G + ++E SA T   +  +F E
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 21/157 (13%)
Query: 81  QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
           Q +  D      +I DT G  ++  +  +      A I+V+ +T       +K  ++EL 
Sbjct: 47  QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVT-------SKQSLEEL- 98
Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
               P      + K  V+        +I + L GNK D   ++R V+  E +A A+E   
Sbjct: 99  ---GPIYKLIVQIKGSVE--------DIPVMLVGNKCD--ETQREVDTREAQAVAQEWKC 145
Query: 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRR 237
            FMETSAK   NV E+F E+     ++ ++    G+R
Sbjct: 146 AFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKR 182

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 22/132 (16%)
Query: 92  FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
            ++ DTAGQE +  +   Y R     +IVY +T++ +F                ++D F 
Sbjct: 68  LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFE---------------HVDRFH 112
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT-A 210
           +    VK+  R + P I++A   NK DL   R+ V   +G+  A +  + ++ETSAK   
Sbjct: 113 QLILRVKD--RESFPMILVA---NKVDLMHLRK-VTRDQGKEMATKYNIPYIETSAKDPP 166
Query: 211 MNVNEIFVEIAK 222
           +NV++ F ++ +
Sbjct: 167 LNVDKTFHDLVR 178

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 22/132 (16%)
Query: 92  FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
            ++ DTAGQE +  +   Y R     +IVY +T++ +F                ++D F 
Sbjct: 68  LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFE---------------HVDRFH 112
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT-A 210
           +    VK+  R + P I++A   NK DL   R+ V   +G+  A +  + ++ETSAK   
Sbjct: 113 QLILRVKD--RESFPMILVA---NKVDLMHLRK-VTRDQGKEMATKYNIPYIETSAKDPP 166
Query: 211 MNVNEIFVEIAK 222
           +NV++ F ++ +
Sbjct: 167 LNVDKTFHDLVR 178

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAG E Y  L P+ Y      +I + + +  +F          
Sbjct: 41  SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    PN  I L G K DL   +  +E           Y
Sbjct: 94  ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            +G A A+E G + ++E SA T   +  +F E
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 22/132 (16%)
Query: 92  FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
            ++ DTAGQE +  +   Y R     +IVY +T++ +F                ++D F 
Sbjct: 63  LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFE---------------HVDRFH 107
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT-A 210
           +    VK+  R + P I++A   NK DL   R+ V   +G+  A +  + ++ETSAK   
Sbjct: 108 QLILRVKD--RESFPMILVA---NKVDLMHLRK-VTRDQGKEMATKYNIPYIETSAKDPP 161
Query: 211 MNVNEIFVEIAK 222
           +NV++ F ++ +
Sbjct: 162 LNVDKTFHDLVR 173

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I F +WD  GQ++   L   YY+N QA I V D  ++D  G A+   +EL +M       
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAR---EELMKM------- 110
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
                     L      N ++ +  NK DLP +    E +E
Sbjct: 111 ----------LNEDEMRNAILLVFANKHDLPQAMSISEVTE 141

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ Y      +I + + +  ++          
Sbjct: 47  SANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENV------- 99
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++   P   +I L G K DL   +  +E           Y
Sbjct: 100 ------------RAK-WFPEVRHHCPSTPII-LVGTKLDLRDDKDTIEKLKEKKLAPITY 145
Query: 189 SEGEAYAEE-NGLLFMETSAKTAMNVNEIFVE 219
            +G A A+E + + ++E SA T   +  +F E
Sbjct: 146 PQGLALAKEIDSVKYLECSALTQRGLKTVFDE 177

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAG E Y  L P+ Y      +I + + +  +F          
Sbjct: 44  SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 96
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    PN  I L G K DL   +  +E           Y
Sbjct: 97  ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 142
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            +G A A+E G + ++E SA T   +  +F E
Sbjct: 143 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 174

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 33/149 (22%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D   +   +WDTAGQE Y  L P+ Y      +I + + +  ++             
Sbjct: 44  VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENV---------- 93
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------YSEG 191
                    RAK W  E++   P   +I L G K DL   +  +E           Y +G
Sbjct: 94  ---------RAK-WFPEVRHHCPSTPII-LVGTKLDLRDDKDTIEKLKEKKLAPITYPQG 142
Query: 192 EAYAEE-NGLLFMETSAKTAMNVNEIFVE 219
            A A+E + + ++E SA T   +  +F E
Sbjct: 143 LALAKEIDSVKYLECSALTQRGLKTVFDE 171

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAG E Y  L P+ Y      +I + + +  +F          
Sbjct: 68  SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 120
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    PN  I L G K DL   +  +E           Y
Sbjct: 121 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 166
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            +G A A+E G + ++E SA T   +  +F E
Sbjct: 167 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ Y      +I + + +  ++          
Sbjct: 48  SANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENV------- 100
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++   P   +I L G K DL   +  +E           Y
Sbjct: 101 ------------RAK-WFPEVRHHCPSTPII-LVGTKLDLRDDKDTIEKLKEKKLAPITY 146
Query: 189 SEGEAYAEE-NGLLFMETSAKTAMNVNEIFVE 219
            +G A A+E + + ++E SA T   +  +F E
Sbjct: 147 PQGLALAKEIDSVKYLECSALTQRGLKTVFDE 178

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ Y      +I + + +  +F          
Sbjct: 42  SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 94
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    P+  I L G K DL   +  +E           Y
Sbjct: 95  ------------RAK-WYPEVRHHC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITY 140
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            +G A A E G + ++E SA T   +  +F E
Sbjct: 141 PQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 23/149 (15%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I  ++W+  G+  +  L     +   A +IVY IT++ +F +A     +L+R        
Sbjct: 59  ILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT---- 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            +I I L GNK+DL   R  V  SEG A A      F+ETSA  
Sbjct: 113 ----------------EDIPIILVGNKSDLVRXRE-VSVSEGRAXAVVFDCKFIETSAAV 155
Query: 210 AMNVNEIFVEIAKKLPKKEVNNGQGGRRL 238
             NV E+F  I +++  +  +  +  RRL
Sbjct: 156 QHNVKELFEGIVRQVRLRRDSKEKNERRL 184

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ Y      +I + + +  +F          
Sbjct: 42  SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 94
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    P+  I L G K DL   +  +E           Y
Sbjct: 95  ------------RAK-WYPEVRHHC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITY 140
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            +G A A E G + ++E SA T   +  +F E
Sbjct: 141 PQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ Y      +I + + +  +F          
Sbjct: 41  SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
                       RAK W  E++    P+  I L G K DL   +  +E           Y
Sbjct: 94  ------------RAK-WYPEVRHHC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITY 139
Query: 189 SEGEAYAEENG-LLFMETSAKTAMNVNEIFVE 219
            +G A A E G + ++E SA T   +  +F E
Sbjct: 140 PQGLAMAREIGSVKYLECSALTQRGLKTVFDE 171

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I F +WD  GQ+R  +L   YYRN +  I V D  ++   G A+   + +QRM   +   
Sbjct: 61  ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAR---EVMQRMLNED--- 114
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
                    EL+     N V  +  NK DLP +    E +E
Sbjct: 115 ---------ELR-----NAVWLVFANKQDLPEAMSAAEITE 141

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 23/149 (15%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I  ++W+  G+  +  L     +   A +IVY IT++ +F +A     +L+R        
Sbjct: 59  ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT---- 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            +I I L GNK+DL   R  V  SEG A A      F+ETSA  
Sbjct: 113 ----------------EDIPIILVGNKSDLVRXRE-VSVSEGRAXAVVFDXKFIETSAAV 155
Query: 210 AMNVNEIFVEIAKKLPKKEVNNGQGGRRL 238
             NV E+F  I +++  +  +  +  RRL
Sbjct: 156 QHNVKELFEGIVRQVRLRRDSKEKNERRL 184

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 60/149 (40%), Gaps = 33/149 (22%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D   +   +WDTAG E Y  L P+ Y      +I + + +  +F             
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHV---------- 245
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------YSEG 191
                    RAK W  E+ R   PN  I L G K DL   +  +E           Y +G
Sbjct: 246 ---------RAK-WYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294
Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            A A+E G + ++E SA T   +  +F E
Sbjct: 295 LAMAKEIGAVKYLECSALTQRGLKTVFDE 323

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 60/149 (40%), Gaps = 33/149 (22%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D   +   +WDTAG E Y  L P+ Y      +I + + +  +F             
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHV---------- 245
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------YSEG 191
                    RAK W  E+ R   PN  I L G K DL   +  +E           Y +G
Sbjct: 246 ---------RAK-WYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294
Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            A A+E G + ++E SA T   +  +F E
Sbjct: 295 LAMAKEIGAVKYLECSALTQRGLKTVFDE 323

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 60/149 (40%), Gaps = 33/149 (22%)
Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D   +   +WDTAG E Y  L P+ Y      +I + + +  +F             
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHV---------- 245
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------YSEG 191
                    RAK W  E+ R   PN  I L G K DL   +  +E           Y +G
Sbjct: 246 ---------RAK-WYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294
Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIFVE 219
            A A+E G + ++E SA T   +  +F E
Sbjct: 295 LAMAKEIGAVKYLECSALTQRGLKTVFDE 323

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I F +WD  GQ+R  +L   YYRN +  I V D  ++   G A+   + +QRM   N D 
Sbjct: 61  ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAR---EVMQRML--NEDE 115
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
             R  +W           +V A   NK DLP +    E +E
Sbjct: 116 L-RNAAW-----------LVFA---NKQDLPEAMSAAEITE 141

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I F +WD  GQ+R  +L   YYRN +  I V D  ++   G A+   + +QRM   N D 
Sbjct: 44  ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAR---EVMQRML--NEDE 98
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
             R  +W+              +  NK DLP +    E +E
Sbjct: 99  L-RNAAWL--------------VFANKQDLPEAMSAAEITE 124

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 48/185 (25%)
Query: 48  MAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEI--WDTAGQERYHT 105
           M Q+  KD   C  +  +  VF  Y         T CL+    R E+  WDT+G   Y  
Sbjct: 43  MLQVLAKD---CYPETYVPTVFENY---------TACLETEEQRVELSLWDTSGSPYYDN 90
Query: 106 LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP 165
           + P+ Y ++ A ++ +DI+  +T   A                     K W  E+    P
Sbjct: 91  VRPLCYSDSDAVLLCFDISRPETVDSA--------------------LKKWRTEILDYCP 130
Query: 166 PNIVIALAGNKADLPTS-----------RRCVEYSEGEAYAEENGL-LFMETSAKTA-MN 212
              V+ L G K DL T            +  + Y +G A A++ G  +++E SA T+  +
Sbjct: 131 STRVL-LIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKS 189
Query: 213 VNEIF 217
           ++ IF
Sbjct: 190 IHSIF 194

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 48/185 (25%)
Query: 48  MAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEI--WDTAGQERYHT 105
           M Q+  KD   C  +  +  VF  Y         T CL+    R E+  WDT+G   Y  
Sbjct: 26  MLQVLAKD---CYPETYVPTVFENY---------TACLETEEQRVELSLWDTSGSPYYDN 73
Query: 106 LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP 165
           + P+ Y ++ A ++ +DI+  +T   A                     K W  E+    P
Sbjct: 74  VRPLCYSDSDAVLLCFDISRPETVDSA--------------------LKKWRTEILDYCP 113
Query: 166 PNIVIALAGNKADLPTS-----------RRCVEYSEGEAYAEENGL-LFMETSAKTA-MN 212
              V+ L G K DL T            +  + Y +G A A++ G  +++E SA T+  +
Sbjct: 114 STRVL-LIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKS 172
Query: 213 VNEIF 217
           ++ IF
Sbjct: 173 IHSIF 177

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 48/185 (25%)
Query: 48  MAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEI--WDTAGQERYHT 105
           M Q+  KD   C  +  +  VF  Y         T CL+    R E+  WDT+G   Y  
Sbjct: 27  MLQVLAKD---CYPETYVPTVFENY---------TACLETEEQRVELSLWDTSGSPYYDN 74
Query: 106 LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP 165
           + P+ Y ++ A ++ +DI+  +T   A                     K W  E+    P
Sbjct: 75  VRPLCYSDSDAVLLCFDISRPETVDSA--------------------LKKWRTEILDYCP 114
Query: 166 PNIVIALAGNKADLPTS-----------RRCVEYSEGEAYAEENGL-LFMETSAKTA-MN 212
              V+ L G K DL T            +  + Y +G A A++ G  +++E SA T+  +
Sbjct: 115 STRVL-LIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKS 173
Query: 213 VNEIF 217
           ++ IF
Sbjct: 174 IHSIF 178

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I  ++W+  G+  +  L     +   A +IVY IT++ +F +A     +L+R        
Sbjct: 59  ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT---- 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            +I I L GNK+DL   R  V  SEG A A      F+ETSA  
Sbjct: 113 ----------------EDIPIILVGNKSDLVRCRE-VSVSEGRACAVVFDCKFIETSAAV 155
Query: 210 AMNVNEIFVEIAKKL 224
             NV E+F  I +++
Sbjct: 156 QHNVKELFEGIVRQV 170

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I  ++W+  G+  +  L     +   A +IVY IT++ +F +A     +L+R        
Sbjct: 90  ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT---- 143
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                            +I I L GNK+DL   R  V  SEG A A      F+ETSA  
Sbjct: 144 ----------------EDIPIILVGNKSDLVRCRE-VSVSEGRACAVVFDCKFIETSAAV 186
Query: 210 AMNVNEIFVEIAKKL 224
             NV E+F  I +++
Sbjct: 187 QHNVKELFEGIVRQV 201

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 37/140 (26%)
Query: 94  IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRA 153
           ++DTAGQE Y  L P+ Y      +I + + N  +F   K                    
Sbjct: 70  LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVK-------------------- 109
Query: 154 KSWVKELQRMAPPNIVIALAGNKADLPTSRR-------------CVEYSEGEAYAEENG- 199
           + WV EL+  A PN+   L G + DL    +             CVE  +G+  A+E G 
Sbjct: 110 EEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVE--QGQKLAKEIGA 166
Query: 200 LLFMETSAKTAMNVNEIFVE 219
             ++E SA T   +  +F E
Sbjct: 167 CCYVECSALTQKGLKTVFDE 186

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 20/107 (18%)
Query: 84  CLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMA 143
           C+    I F +WD  GQ+R  +L   YY N +  I V D  ++   G A+   + +QRM 
Sbjct: 55  CVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAR---EVMQRML 111
Query: 144 PPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
             N D    A +W+              +  NK DLP +    E +E
Sbjct: 112 --NEDELCNA-AWL--------------VFANKQDLPEAMSAAEITE 141

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 25/129 (19%)
Query: 92  FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGR-AKSWVKELQRMAPPNIDTF 150
             +WDTAGQE Y  L P+ Y ++   ++ + + N+ +F   +  W  E++      IDT 
Sbjct: 73  LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY----IDT- 127
Query: 151 GRAKSWVKELQRMAPPNIVIALAGNKADL-PTSRRCVEYSEGEAYAEENG-LLFMETSAK 208
             AK+                L G K DL       V   EG+   ++ G + ++E S+ 
Sbjct: 128 --AKT---------------VLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 170
Query: 209 TAMNVNEIF 217
             + +NE+F
Sbjct: 171 AKIGLNEVF 179

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 25/129 (19%)
Query: 92  FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGR-AKSWVKELQRMAPPNIDTF 150
             +WDTAGQE Y  L P+ Y ++   ++ + + N+ +F   +  W  E++      IDT 
Sbjct: 72  LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY----IDT- 126
Query: 151 GRAKSWVKELQRMAPPNIVIALAGNKADL-PTSRRCVEYSEGEAYAEENG-LLFMETSAK 208
             AK+                L G K DL       V   EG+   ++ G + ++E S+ 
Sbjct: 127 --AKT---------------VLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 169
Query: 209 TAMNVNEIF 217
             + +NE+F
Sbjct: 170 AKIGLNEVF 178

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 92  FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
           F +WD  GQ+R   L   Y++N Q  I V D  +++   R +    ELQ+M         
Sbjct: 63  FTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRE---RIQEVADELQKMLL------- 112
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
                V EL+     + V+ L  NK DLP +    E ++
Sbjct: 113 -----VDELR-----DAVLLLFANKQDLPNAMAISEMTD 141

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I F +WD  GQ++   L   Y++N Q  I V D  ++D    A+    EL RM   +   
Sbjct: 64  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNED--- 117
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
                    EL+     + V+ +  NK DLP +    E ++
Sbjct: 118 ---------ELR-----DAVLLVFANKQDLPNAMNAAEITD 144

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 33/150 (22%)
Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +R ++ DTAGQ+ +  L P+ Y N    ++ + + +  +F          
Sbjct: 58  SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNV------- 110
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-------RRCVEYSEGE 192
                        ++ WV E+ R   P   I L G ++DL           +C E    E
Sbjct: 111 -------------SEKWVPEI-RCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPE 156
Query: 193 AYA-----EENGLLFMETSAKTAMNVNEIF 217
             A     E     ++E SA T  N+ E+F
Sbjct: 157 EAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 48/174 (27%)
Query: 30  IPKGNWFSMMSGKRQ-------------SDCMAQIWLKDRVDCMTQIVINVVFYPYLFSA 76
           +P+G+ FS + GK+Q             +  + ++ L + V  +  I  NV    Y    
Sbjct: 15  VPRGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---- 70
Query: 77  AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
               + +C       F +WD  GQ++   L   Y++N Q  I V D  +++   R +   
Sbjct: 71  ----KNIC-------FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RVQESA 116
Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
            ELQ+M                 LQ     + V+ +  NK D+P +    E ++
Sbjct: 117 DELQKM-----------------LQEDELRDAVLLVFANKQDMPNAMPVSELTD 153

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I F +WD  GQ++   L   Y++N Q  I V D  +++    A+   +EL RM   +   
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAED--- 114
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
                    EL+     + V+ +  NK DLP +    E ++
Sbjct: 115 ---------ELR-----DAVLLVFANKQDLPNAMNAAEITD 141

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 22/116 (18%)
Query: 75  SAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
           +  F  +TV   +V  +F +WD  GQ++   L   YY   Q  I V D  ++D    A+ 
Sbjct: 44  TVGFNVETVTYKNV--KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR- 100
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
             +EL R+               +E++     + +I +  NK DLP + +  E  E
Sbjct: 101 --QELHRIIND------------REMR-----DAIILIFANKQDLPDAMKPHEIQE 137

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I F +WD  GQ++   L   Y++N Q  I V D  +++    A+   +EL RM   +   
Sbjct: 60  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAED--- 113
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
                    EL+     + V+ +  NK DLP +    E ++
Sbjct: 114 ---------ELR-----DAVLLVFANKQDLPNAMNAAEITD 140

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 20/101 (19%)
Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I F +WD  GQ++   L   YY N    I V D  +++    A+   +EL RM       
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAR---EELHRMINE---- 113
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
                   +EL+     + +I +  NK DLP +    E +E
Sbjct: 114 --------EELK-----DAIILVFANKQDLPNAMSAAEVTE 141

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 22/116 (18%)
Query: 75  SAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
           +  F  +TV   +V  +F +WD  GQ++   L   YY   Q  I V D  ++D    A+ 
Sbjct: 43  TVGFNVETVTYKNV--KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR- 99
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
             +EL R+               +E++     + +I +  NK DLP + +  E  E
Sbjct: 100 --QELHRIIND------------REMR-----DAIILIFANKQDLPDAMKPHEIQE 136

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	373
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-73
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-15
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-72
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-14
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	3e-72
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	3e-16
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	3e-72
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-16
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	6e-72
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	3e-16
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-70
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	7e-15
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-70
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-14
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-63
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-13
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-62
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	4e-11
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-61
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-13
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	3e-61
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-12
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	4e-61
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-12
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-60
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-11
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-60
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-11
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	5e-60
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	2e-11
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	7e-60
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	5e-12
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	3e-59
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	4e-11
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	4e-59
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-11
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-58
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-11
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	5e-58
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	4e-11
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	7e-58
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-10
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-57
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	6e-10
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	4e-57
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	3e-12
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	6e-57
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	4e-12
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	7e-57
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	3e-11
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-56
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	3e-10
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	2e-56
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	2e-10
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-55
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	5e-11
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-55
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-10
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	8e-55
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	2e-11
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	4e-54
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-09
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	7e-54
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	3e-08
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	7e-54
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	5e-11
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	5e-53
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-16
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	5e-53
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	2e-09
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	6e-53
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-09
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	6e-53
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-09
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	7e-53
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-09
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	7e-53
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-10
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	7e-53
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-09
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	8e-53
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-09
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-51
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	5e-10
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-49
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-09
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	4e-49
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-09
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	1e-48
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-12
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-47
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-11
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	1e-45
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	1e-11
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	4e-45
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	3e-10
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	6e-45
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-10
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	4e-44
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	5e-11
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	4e-44
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	7e-13
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	4e-44
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	8e-09
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	7e-44
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-10
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	3e-43
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	4e-09
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-43
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-10
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	3e-43
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-10
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	4e-43
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	7e-11
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-42
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	6e-11
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-41
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-10
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	4e-41
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-12
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	6e-41
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-09
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-40
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	6e-11
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	2e-40
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-07
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-40
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	4e-10
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-40
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-08
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	3e-40
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-08
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	7e-40
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-10
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-38
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	7e-11
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	6e-38
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	9e-09
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-37
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-10
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-27
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-05
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	3e-26
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	3e-26
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	6e-04
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	3e-25
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-04
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	5e-25
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	3e-04
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	9e-25
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	3e-24
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	3e-05
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	4e-23
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	9e-05
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	6e-23
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	6e-22
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	8e-05
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	9e-22
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-04
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	6e-21
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	9e-05
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	1e-20
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	5e-05
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	8e-19
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-18
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-12
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	1e-08
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	4e-08
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	9e-08
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-07
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-07
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-07
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-07
3llu_A	196	RAS-related GTP-binding protein C; structural geno	3e-07
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	4e-07
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	5e-07
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	7e-07
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	8e-07
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	4e-06
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	5e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	9e-06
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-05
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-05
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1nrj_B	218	SR-beta, signal recognition particle receptor beta	5e-05
2fh5_B	214	SR-beta, signal recognition particle receptor beta	4e-04
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	6e-04

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  225 bits (576), Expect = 2e-73
 Identities = 84/153 (54%), Positives = 105/153 (68%), Gaps = 22/153 (14%)

Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           AAF +QT+ ++D T++FEIWDTAGQERYH+LAPMYYR A AAIIV+D+TNQ         
Sbjct: 47  AAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQ--------- 97

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
                        +F RAK WV+ELQ    PN+V+ALAGNK+DL    R V   + + YA
Sbjct: 98  ------------ASFERAKKWVQELQAQGNPNMVMALAGNKSDL-LDARKVTAEDAQTYA 144

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
           +ENGL FMETSAKTA NV EIF EIA++LP+ +
Sbjct: 145 QENGLFFMETSAKTATNVKEIFYEIARRLPRVQ 177

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 73.3 bits (181), Expect = 1e-15
 Identities = 26/42 (61%), Positives = 29/42 (69%)

Query: 290 QTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
               K    KLVLLG+   GKSSLVLRFV+ QF E+QESTIG
Sbjct: 5   AAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIG 46

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  223 bits (571), Expect = 2e-72
 Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 27/181 (14%)

Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
             F+++T+ L+D T+R ++WDTAG ER+ +L P Y R++  A++VYDITN          
Sbjct: 51  IDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNV--------- 101

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
                       ++F +   W+ +++     +++I L GNK DL   +R V   EGE  A
Sbjct: 102 ------------NSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL-ADKRQVSIEEGERKA 148

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE-----VNNGQGGRRLVETAEAPKTSNC 250
           +E  ++F+ETSAK   NV ++F  +A  LP  E             +L +  E P +   
Sbjct: 149 KELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGG 208

Query: 251 C 251
           C
Sbjct: 209 C 209

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 282 GRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           G            + ++KLV LGE +VGK+SL+ RF+   F    ++TIG
Sbjct: 1   GPGMSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 50

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  222 bits (568), Expect = 3e-72
 Identities = 68/153 (44%), Positives = 94/153 (61%), Gaps = 22/153 (14%)

Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           A+F+T+TV   +   +F IWDTAGQER+H+LAPMYYR + AA+IVYDIT Q         
Sbjct: 58  ASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQ--------- 108

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
                       D+F   K WVKEL+   P NIV+A+AGNK DL +  R V   + + YA
Sbjct: 109 ------------DSFYTLKKWVKELKEHGPENIVMAIAGNKCDL-SDIREVPLKDAKEYA 155

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
           E  G + +ETSAK A+N+ E+F  I++++P  +
Sbjct: 156 ESIGAIVVETSAKNAINIEELFQGISRQIPPLD 188

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 75.3 bits (186), Expect = 3e-16
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 269 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 328
           M +S++ + +  G           + I + K+ LLG++ VGKSS+V RFV+  F      
Sbjct: 1   MGSSHHHHHHSSGLV------PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISP 54

Query: 329 TIG 331
           TIG
Sbjct: 55  TIG 57

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  221 bits (566), Expect = 3e-72
 Identities = 67/151 (44%), Positives = 96/151 (63%), Gaps = 22/151 (14%)

Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           A+F+T+TV   +   +F IWDTAG ER+  LAPMYYR + AAIIVYDIT +         
Sbjct: 41  ASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKE--------- 91

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
                       +TF   K+WV+EL++  PP+IV+A+AGNK DL T  R V   + + YA
Sbjct: 92  ------------ETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL-TDVREVMERDAKDYA 138

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
           +    +F+ETSAK A+N+NE+F+EI++++P 
Sbjct: 139 DSIHAIFVETSAKNAININELFIEISRRIPS 169

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 75.2 bits (186), Expect = 2e-16
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           + + + K+ LLG++ VGKSS++ RFV   F      TIG
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG 40

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  220 bits (564), Expect = 6e-72
 Identities = 98/151 (64%), Positives = 118/151 (78%), Gaps = 22/151 (14%)

Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+         
Sbjct: 41  AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE--------- 91

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
                       ++F RAK+WVKELQR A PNIVIAL+GNKADL  ++R V++ E ++YA
Sbjct: 92  ------------ESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQSYA 138

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
           ++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 74.5 bits (184), Expect = 3e-16
 Identities = 35/38 (92%), Positives = 38/38 (100%)

Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 3   KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG 40

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  217 bits (556), Expect = 1e-70
 Identities = 53/153 (34%), Positives = 87/153 (56%), Gaps = 22/153 (14%)

Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
             F+++T+ L+D T+R ++WDTAGQER+ +L P Y R++  A++VYDITN          
Sbjct: 49  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNT--------- 99

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
                       ++F +   W+ +++     +++I L GNK DL + +R V   EGE  A
Sbjct: 100 ------------NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL-SDKRQVSTEEGERKA 146

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
           +E  ++F+ETSAK   NV ++F  +A  LP  +
Sbjct: 147 KELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 179

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 71.1 bits (175), Expect = 7e-15
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 288 NDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +      + ++KLV LGE +VGK+SL+ RF+   F    ++TIG
Sbjct: 5   SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 48

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  216 bits (554), Expect = 2e-70
 Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 22/151 (14%)

Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           A+F+T+ + +    +   IWDTAGQER+H L P+YYR++  AI+VYDIT++         
Sbjct: 41  ASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDE--------- 91

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
                       D+F + K+WVKEL++M    I + + GNK DL    R V   E E+YA
Sbjct: 92  ------------DSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EKERHVSIQEAESYA 138

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
           E  G     TSAK    + E+F+++ K++ +
Sbjct: 139 ESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 70.2 bits (173), Expect = 1e-14
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           ++   +K+VLLGE  VGK+SLVLR+   +F++   +T+G
Sbjct: 2   SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG 40

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  199 bits (509), Expect = 1e-63
 Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 20/156 (12%)

Query: 76  AAFITQTVCLDD-VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
             F  + + L   + +  +IWD  GQ     +   Y   AQ  ++VYDITN  +F   + 
Sbjct: 41  LDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLED 100

Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194
           W                     VK++   +    ++AL GNK DL    R ++  +   +
Sbjct: 101 WYTV------------------VKKVSEESETQPLVALVGNKIDLE-HMRTIKPEKHLRF 141

Query: 195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN 230
            +ENG      SAKT  +V   F ++A ++   ++N
Sbjct: 142 CQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLN 177

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            Q K+V+LG+ A GK+SL   F +  F +  + TIG
Sbjct: 5   RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG 40

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  198 bits (505), Expect = 2e-62
 Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 21/156 (13%)

Query: 76  AAFITQTVCLDDVTIRFEIW--DTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK 133
              +   V + D T+  E++  DTAG + Y      Y+     AI+V+D+++ ++F   K
Sbjct: 57  VEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCK 116

Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193
           +W + L+   P                       +   L  NK DLP  R  V     + 
Sbjct: 117 AWFELLKSARP------------------DRERPLRAVLVANKTDLPPQRHQVRLDMAQD 158

Query: 194 YAEENGLLFMETSAK-TAMNVNEIFVEIAKKLPKKE 228
           +A  N L F + SA     + +  F+ IA    +  
Sbjct: 159 WATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY 194

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 279 GRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVR--GQFHEYQESTIG 331
                 +           + K+ ++GE+ VGKS+L+  F     +F +    T G
Sbjct: 2   AASMVKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSG 56

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  195 bits (498), Expect = 2e-61
 Identities = 37/151 (24%), Positives = 59/151 (39%), Gaps = 22/151 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
                +      I+F +WDTAGQE+   L  +YY  A  AI+ +D+T++           
Sbjct: 49  HPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSR----------- 97

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                      T      WVKE Q +      I +  NK D+  +R+ +         + 
Sbjct: 98  ----------ITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK-NRQKISKKLVMEVLKG 146

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
               + E SAKTA N    F+ +A+    + 
Sbjct: 147 KNYEYFEISAKTAHNFGLPFLHLARIFTGRP 177

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 289 DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
              + +   YK+ L+G+  VGK++ + R + G+F +   +T+G  
Sbjct: 3   GSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAV 47

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  195 bits (496), Expect = 3e-61
 Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 25/178 (14%)

Query: 53  LKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYR 112
           +K+  +      IN +                 +   I+F+IWDTAGQERY ++ P+YYR
Sbjct: 56  IKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYR 115

Query: 113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIAL 172
            A  AI+V+DI+N +T  RAK+WV +L+                          N +I L
Sbjct: 116 GATCAIVVFDISNSNTLDRAKTWVNQLK-----------------------ISSNYIIIL 152

Query: 173 AGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN 230
             NK D   ++  V+  E + YA++N LLF++TSAKT  N+  IF  +A+++ K  +N
Sbjct: 153 VANKIDK--NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNIIN 208

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 65.2 bits (159), Expect = 1e-12
 Identities = 23/40 (57%), Positives = 27/40 (67%)

Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
           K   YK VLLGES+VGKSS+VLR  +  FHE   +TIG  
Sbjct: 4   KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGAS 43

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  193 bits (494), Expect = 4e-61
 Identities = 55/150 (36%), Positives = 76/150 (50%), Gaps = 22/150 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+TV L    ++ +IWDTAG ERY  +   YYR A  A++V+D+T             
Sbjct: 62  FSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKH----------- 110

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                      T+   + W+KEL   A   IV+ L GNK+DL +  R V   E   +AE 
Sbjct: 111 ----------QTYAVVERWLKELYDHAEATIVVMLVGNKSDL-SQAREVPTEEARMFAEN 159

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           NGLLF+ETSA  + NV   F  + K++  K
Sbjct: 160 NGLLFLETSALDSTNVELAFETVLKEIFAK 189

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 272 SNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           S++ + +   G + R ++        +K+VL+GES VGK++L+ RF R +F     +TIG
Sbjct: 3   SSHHHHHHSSGLVPRGSEDYN---FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG 59

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  193 bits (492), Expect = 1e-60
 Identities = 57/147 (38%), Positives = 77/147 (52%), Gaps = 22/147 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+++ +D  TI+ +IWDTAG ERY  +   YYR A  A++VYDI              
Sbjct: 66  FATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKH----------- 114

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                      T+   + W+KEL+  A  NIVI L GNK+DL    R V   E  A+AE+
Sbjct: 115 ----------LTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEK 163

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL 224
           NGL F+ETSA  + NV   F  I  ++
Sbjct: 164 NGLSFIETSALDSTNVEAAFQTILTEI 190

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 18/35 (51%), Positives = 27/35 (77%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            +K+VL+G+S VGKS+L+ RF R +F+   +STIG
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 63

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  193 bits (492), Expect = 1e-60
 Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 31/179 (17%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+++ +D  TI+ +IWDTAGQERY  +   YYR A  A++VYDI              
Sbjct: 42  FATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKH----------- 90

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                      T+   + W+KEL+  A  NIVI L GNK+DL    R V   E  A+AE+
Sbjct: 91  ----------LTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEK 139

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK---------EVNNGQGGRRLVETAEAPKT 247
           N L F+ETSA  + NV E F  I  ++ +            ++   G  +V+ +  P T
Sbjct: 140 NNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTT 198

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 18/35 (51%), Positives = 27/35 (77%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            +K+VL+G+S VGKS+L+ RF R +F+   +STIG
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 39

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  191 bits (488), Expect = 5e-60
 Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 23/182 (12%)

Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           A F+T+ V +DD  +  +IWDTAGQER+ +L   +YR A   ++V+D+T  +TF    SW
Sbjct: 43  ADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW 102

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
             E    A P                   P N    + GNK DL  +R+           
Sbjct: 103 RDEFLIQASPR-----------------DPENFPFVVLGNKIDLE-NRQVATKRAQAWCY 144

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE-----VNNGQGGRRLVETAEAPKTSNC 250
            +N + + ETSAK A+NV + F  IA+   K+E      N      +L +   A  ++  
Sbjct: 145 SKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAES 204

Query: 251 CN 252
           C+
Sbjct: 205 CS 206

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           T  K    K+++LG+S VGK+SL+ ++V  +F    ++TIG
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG 42

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  190 bits (484), Expect = 7e-60
 Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 23/150 (15%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+ + + ++D  +R  +WDTAGQE +  +   YYR AQA ++V+  T++++F    SW +
Sbjct: 42  FLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWRE 101

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           ++                           +I  AL  NK DL     C++  E E  A+ 
Sbjct: 102 KVVAEV----------------------GDIPTALVQNKIDL-LDDSCIKNEEAEGLAKR 138

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
             L F  TS K  +NV+E+F  +A+K  +K
Sbjct: 139 LKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 62.5 bits (153), Expect = 5e-12
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
                 K+V++G  AVGKSS++ R+ +G F +  + TIG
Sbjct: 1   GSEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIG 39

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  189 bits (482), Expect = 3e-59
 Identities = 64/156 (41%), Positives = 94/156 (60%), Gaps = 23/156 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  + V +D   I+ +IWDTAGQE + ++   YYR A  A++VYDIT ++TF        
Sbjct: 58  FGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN------- 110

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                   ++       SW+++ ++ +  N+VI L GNK+DL  SRR V+  EGEA+A E
Sbjct: 111 --------HL------TSWLEDARQHSSSNMVIMLIGNKSDL-ESRRDVKREEGEAFARE 155

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQ 233
           +GL+FMETSAKTA NV E F+  AK++ +K +  G 
Sbjct: 156 HGLIFMETSAKTACNVEEAFINTAKEIYRK-IQQGL 190

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 60.7 bits (148), Expect = 4e-11
 Identities = 13/51 (25%), Positives = 24/51 (47%)

Query: 281 GGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
                  +         +K +++G++ VGKS L+L+F   +F    + TIG
Sbjct: 5   HHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG 55

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  188 bits (480), Expect = 4e-59
 Identities = 60/149 (40%), Positives = 86/149 (57%), Gaps = 22/149 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+ + +    I+ +IWDTAGQER+  +   YYR A  A++VYDIT + T+        
Sbjct: 52  FGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN------- 104

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                   ++       SW+ + + +  PN VI L GNKADL  ++R V Y E + +AEE
Sbjct: 105 --------HL------SSWLTDARNLTNPNTVIILIGNKADL-EAQRDVTYEEAKQFAEE 149

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
           NGLLF+E SAKT  NV + F+E AKK+ +
Sbjct: 150 NGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            +K +++G+  VGKS L+ +F   +F      TIG
Sbjct: 15  IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG 49

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  187 bits (478), Expect = 1e-58
 Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 23/156 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F ++ V +   T++ +IWDTAGQER+ ++   YYR A  A++VYDIT+++T+        
Sbjct: 62  FGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYN------- 114

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                   ++       +W+ + + +A PNIV+ L GNK DL    R V + E   +A+E
Sbjct: 115 --------SL------AAWLTDARTLASPNIVVILCGNKKDL-DPEREVTFLEASRFAQE 159

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQ 233
           N L+F+ETSA T  NV E F++ A+ +   ++++G+
Sbjct: 160 NELMFLETSALTGENVEEAFLKCARTI-LNKIDSGE 194

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 272 SNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           S++ + +   G + R +  +      +K +++G +  GKS L+ +F+  +F +    TIG
Sbjct: 3   SSHHHHHHSSGLVPRGSIWSD---FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIG 59

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  186 bits (475), Expect = 5e-58
 Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 22/150 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+ +TV ++   ++ +IWDTAGQER+ ++   YYR+A A I+ YDIT +++F        
Sbjct: 63  FMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFR------- 115

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                    +        W++E+++ A   ++  L GNK DL   RR V     E ++E 
Sbjct: 116 --------CL------PEWLREIEQYASNKVITVLVGNKIDLA-ERREVSQQRAEEFSEA 160

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
             + ++ETSAK + NV ++F+++A +L  +
Sbjct: 161 QDMYYLETSAKESDNVEKLFLDLACRLISE 190

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 60.7 bits (148), Expect = 4e-11
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 271 NSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
            S++ + +   G + R + +       +K+VL+G + VGK+ LV RF +G F   Q +TI
Sbjct: 2   GSSHHHHHHSSGLVPRGSMEDYD--FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI 59

Query: 331 G 331
           G
Sbjct: 60  G 60

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  185 bits (472), Expect = 7e-58
 Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 26/162 (16%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F ++ + +    ++ +IWDTAGQER+ ++   YYR A  A++VYDIT+++T+        
Sbjct: 47  FGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYN------- 99

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                    +       +W+ + + +A  NIVI L GNK DL  + R V + E   +A+E
Sbjct: 100 --------AL------TNWLTDARMLASQNIVIILCGNKKDL-DADREVTFLEASRFAQE 144

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAK----KLPKKEVNNGQGG 235
           N L+F+ETSA T  NV E FV+ A+    K+   E++  + G
Sbjct: 145 NELMFLETSALTGENVEEAFVQCARKILNKIESGELDPERMG 186

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            +K +++G +  GKS L+ +F+  +F +    TIG
Sbjct: 10  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIG 44

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  185 bits (471), Expect = 2e-57
 Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 31/183 (16%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +TV LD  T++ +IWDTAGQER+ T+   YYR +   IIVYD+T+Q++F        
Sbjct: 45  FKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN------- 97

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                    +      K W++E+ R A   ++  L GNK DL   +R VEY   + +A+ 
Sbjct: 98  --------GV------KMWLQEIDRYATSTVLKLLVGNKCDL-KDKRVVEYDVAKEFADA 142

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK---------EVNNGQGGRRLVETAEAPKTS 248
           N + F+ETSA  + NV + F+ +A+++ +                 G   ++      T 
Sbjct: 143 NKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNTG 202

Query: 249 NCC 251
            CC
Sbjct: 203 GCC 205

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 57.7 bits (140), Expect = 6e-10
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +KL+L+G S VGKS L+LRF    +     STIG
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG 42

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  184 bits (468), Expect = 4e-57
 Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 26/155 (16%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ +D      ++WDTAGQER+ ++A  Y+R A   +++YD+T + +F        
Sbjct: 65  FQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFL------- 117

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP-----TSRRCVEYSEGE 192
                   NI      + WV  ++  A   + I L GNKAD+        ++CV    GE
Sbjct: 118 --------NI------REWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGE 163

Query: 193 AYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
             A   G LF ETSAK   N+ E  + +A+++ K+
Sbjct: 164 KLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 63.8 bits (156), Expect = 3e-12
 Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 269 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 328
           M +S++ + +  G  + R + ++ +    YK+VL G++AVGKSS ++R  + +F E   +
Sbjct: 1   MGSSHHHHHHSSGL-VPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISA 59

Query: 329 TIG 331
           T+G
Sbjct: 60  TLG 62

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  184 bits (469), Expect = 6e-57
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 25/153 (16%)

Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
                     +   I+F +WDTAGQE++  L   YY  AQ AII++D+T++ T+    +W
Sbjct: 50  VEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 109

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
            ++L R+                        NI I L GNK D+   R+     +   + 
Sbjct: 110 HRDLVRVC----------------------ENIPIVLCGNKVDIK-DRKVKA--KSIVFH 144

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
            +  L + + SAK+  N  + F+ +A+KL    
Sbjct: 145 RKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 64.3 bits (157), Expect = 4e-12
 Identities = 14/35 (40%), Positives = 24/35 (68%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           Q+KLVL+G+   GK++ V R + G+F +   +T+G
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 49

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  184 bits (468), Expect = 7e-57
 Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 22/150 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F T+T+ ++   I+ +IWDTAGQERY  +   YYR A  A+IVYDI+             
Sbjct: 50  FATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKS----------- 98

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                      ++     W+ EL+  A  N+ + L GNK+DL    R V   E + +A+E
Sbjct: 99  ----------SSYENCNHWLSELRENADDNVAVGLIGNKSDL-AHLRAVPTEESKTFAQE 147

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           N LLF ETSA  + NV++ F E+   + +K
Sbjct: 148 NQLLFTETSALNSENVDKAFEELINTIYQK 177

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 17/35 (48%), Positives = 27/35 (77%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            +K+VL+G+S VGKS+L+ RF + +F+   +STIG
Sbjct: 13  LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIG 47

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  182 bits (464), Expect = 2e-56
 Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 22/150 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ LD  TI+ +IWDTAGQER+ T+   YYR A   I+VYD+T+Q++F        
Sbjct: 70  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN------- 122

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                   N+      K W++E+ R A  N+   L GNK DL T+++ V+Y+  + +A+ 
Sbjct: 123 --------NV------KQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADS 167

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 168 LGIPFLETSAKNATNVEQSFMTMAAEIKKR 197

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            +KL+L+G+S VGKS L+LRF    + E   STIG
Sbjct: 33  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 67

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  182 bits (463), Expect = 2e-56
 Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 22/150 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ LD  TI+ +IWDTAGQER+ T+   YYR A   I+VYD+T+Q++F        
Sbjct: 53  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN------- 105

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                   N+      K W++E+ R A  N+   L GNK DL T+++ V+Y+  + +A+ 
Sbjct: 106 --------NV------KQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADS 150

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 151 LGIPFLETSAKNATNVEQSFMTMAAEIKKR 180

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            +KL+L+G+S VGKS L+LRF    + E   STIG
Sbjct: 16  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 50

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  179 bits (457), Expect = 1e-55
 Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 19/155 (12%)

Query: 76  AAFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
           A F+T+ V +D D     ++WDTAGQER+ +L   +YR A   ++VYD+TN  +F   KS
Sbjct: 43  ADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS 102

Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194
           W  E    A  N                 +P      + GNK D   S++ V     +  
Sbjct: 103 WRDEFLVHANVN-----------------SPETFPFVILGNKIDAEESKKIVSEKSAQEL 145

Query: 195 AEENG-LLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
           A+  G +    TSAK A+NV+  F EIA+   ++ 
Sbjct: 146 AKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 59.9 bits (146), Expect = 5e-11
 Identities = 14/34 (41%), Positives = 26/34 (76%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            K+++LG+S VGK+SL+ R+V  ++ +  ++TIG
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIG 42

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  180 bits (458), Expect = 1e-55
 Identities = 55/150 (36%), Positives = 79/150 (52%), Gaps = 22/150 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ +D    +  IWDTAGQER+ TL P YYR AQ  I+VYD+T +DTF +  +W+ 
Sbjct: 52  FKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLN 111

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           EL+     N                    +IV  L GNK D     R V+ +EG  +A +
Sbjct: 112 ELETYCTRN--------------------DIVNMLVGNKIDK--ENREVDRNEGLKFARK 149

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           + +LF+E SAKT   V   F E+ +K+ + 
Sbjct: 150 HSMLFIEASAKTCDGVQCAFEELVEKIIQT 179

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
             K++++GES VGKSSL+LRF    F     +TIG
Sbjct: 15  TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG 49

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  178 bits (453), Expect = 8e-55
 Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 23/151 (15%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ +    ++ +IWDTAGQER+ T+   YYR+A  AI+ YDIT + +F        
Sbjct: 66  FTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFL------- 118

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                   ++        W++++++ A  NIV  L GNK+DL +  R V  +E ++ AE 
Sbjct: 119 --------SV------PHWIEDVRKYAGSNIVQLLIGNKSDL-SELREVSLAEAQSLAEH 163

Query: 198 NGLL-FMETSAKTAMNVNEIFVEIAKKLPKK 227
             +L  +ETSAK + NV E F+ +A +L  +
Sbjct: 164 YDILCAIETSAKDSSNVEEAFLRVATELIMR 194

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 272 SNNSNSNGRGGRIQRPNDQTQAKI-CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
           S++ + +   G + R +     +    +KLVL+G+++VGK+ +V RF  G F E Q STI
Sbjct: 3   SSHHHHHHSSGLVPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTI 62

Query: 331 G 331
           G
Sbjct: 63  G 63

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  176 bits (449), Expect = 4e-54
 Identities = 61/180 (33%), Positives = 87/180 (48%), Gaps = 28/180 (15%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +TV ++   ++ ++WDTAGQER+ T+   YYR A   I+VYD+T++ TF        
Sbjct: 57  FKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFT------- 109

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                   NI      K W K +   A     + L GNK+D+    R V   +GEA A+E
Sbjct: 110 --------NI------KQWFKTVNEHANDEAQLLLVGNKSDM--ETRVVTADQGEALAKE 153

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL-----PKKEVNNGQGGRRLVETAEAPKTSNCCN 252
            G+ F+E+SAK   NVNEIF  +AK +       K V  G G    +        S+  N
Sbjct: 154 LGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNISINSGSGNSSKSN 213

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 16/34 (47%), Positives = 25/34 (73%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            K++L+G+S VGKS L++RFV  +F+    +TIG
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG 54

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  175 bits (445), Expect = 7e-54
 Identities = 54/150 (36%), Positives = 86/150 (57%), Gaps = 22/150 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  + + +D V ++ ++WDTAGQER+ ++   YYR+A A +++YD+TN+ +F        
Sbjct: 48  FRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFD------- 100

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                   NI      ++W+ E+   A  ++ + L GNK D     R V+  +GE  A+E
Sbjct: 101 --------NI------QAWLTEIHEYAQHDVALMLLGNKVDS-AHERVVKREDGEKLAKE 145

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            GL FMETSAKT +NV+  F  IAK+L ++
Sbjct: 146 YGLPFMETSAKTGLNVDLAFTAIAKELKRR 175

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQE-STIG 331
            +K++L+G+S VGK+ L++RF  G F      ST+G
Sbjct: 10  AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVG 45

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  175 bits (445), Expect = 7e-54
 Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 25/153 (16%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYH-TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
           F  + V +D   I+ ++WDTAGQER+  ++   YYRN  A + VYD+TN  +F    +W+
Sbjct: 57  FRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWI 116

Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196
           +E ++    N                    +I   L GNK DL  S   V     + +A+
Sbjct: 117 EECKQHLLAN--------------------DIPRILVGNKCDL-RSAIQVPTDLAQKFAD 155

Query: 197 ENGLLFMETSAKTAM---NVNEIFVEIAKKLPK 226
            + +   ETSAK      +V  IF+ +A KL  
Sbjct: 156 THSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 60.3 bits (147), Expect = 5e-11
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            +K++++G+S VGK+ L  RF  G+F +  E+TIG
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG 54

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  172 bits (438), Expect = 5e-53
 Identities = 75/154 (48%), Positives = 96/154 (62%), Gaps = 23/154 (14%)

Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
           AAF+TQ V +++ T++FEIWDTAGQER+ +LAP YYRNAQAA++VYD+T           
Sbjct: 38  AAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKP--------- 88

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL--PTSRRCVEYSEGEA 193
                        +F +A+ WVKEL   A  +I+IAL GNK D       R V   EGE 
Sbjct: 89  ------------QSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEK 136

Query: 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            AEE GLLF ETSAKT  NVN++F+ I +K+P K
Sbjct: 137 LAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 75.6 bits (186), Expect = 1e-16
 Identities = 24/37 (64%), Positives = 28/37 (75%)

Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +   KLVLLGE+AVGKSS+VLRFV   F E +E TIG
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  173 bits (441), Expect = 5e-53
 Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 32/179 (17%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+  +D  I+ +IWDTAG ERY T+   YYR A   I++YDITN+++F        
Sbjct: 45  FKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFN------- 97

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                    +      + W  +++  +  N  + L GNK D+    R V    G   A+ 
Sbjct: 98  --------AV------QDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADH 142

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK----------EVNNGQGGRRLVETAEAPK 246
            G  F E SAK  +NV + F  +   + +K           V   + G +L +    P 
Sbjct: 143 LGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPH 201

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            +K++++G S+VGK+S + R+    F     ST+G
Sbjct: 8   MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG 42

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  173 bits (440), Expect = 6e-53
 Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 22/150 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +TV   D  I+ +IWDTAGQERY T+   YYR A   +++YDI NQ++F        
Sbjct: 59  FKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFA------- 111

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                    +      + W  +++  +  N  + L GNK DL    R V   +G   A++
Sbjct: 112 --------AV------QDWATQIKTYSWDNAQVILVGNKCDL-EDERVVPAEDGRRLADD 156

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G  F E SAK  +NV ++F  +   + +K
Sbjct: 157 LGFEFFEASAKENINVKQVFERLVDVICEK 186

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +KL+L+G S+VGK+S + R+    F     ST+G
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG 56

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  172 bits (439), Expect = 6e-53
 Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 26/161 (16%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +T+ LD   I+ +IWDTAGQER+ T+   YYR A   ++VYDITN+ +F        
Sbjct: 45  FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD------- 97

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                   NI      ++W++ ++  A  ++   + GNK D+   +R V    GE  A +
Sbjct: 98  --------NI------RNWIRNIEEHASADVEKMILGNKCDVN-DKRQVSKERGEKLALD 142

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAK----KLPKKEVNNGQG 234
            G+ FMETSAK  +NV   F  +A+    K+ K       G
Sbjct: 143 YGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKATAAG 183

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            +KL+L+G+S VGK+ ++ RF    F+    STIG
Sbjct: 8   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIG 42

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  172 bits (439), Expect = 7e-53
 Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 22/154 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +TV   +  ++ +IWDTAGQERY T+   YYR A   I++YDITN+++F        
Sbjct: 60  FKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN------- 112

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                    +      + W  +++  +  N  + L GNK D+    R V   +G+  AE+
Sbjct: 113 --------AV------QDWATQIKTYSWDNAQVILVGNKCDM-EEERVVPTEKGQLLAEQ 157

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
            G  F E SAK  ++V + F  +   +  K  ++
Sbjct: 158 LGFDFFEASAKENISVRQAFERLVDAICDKMSDS 191

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +KL+++G S+VGK+S + R+    F     ST+G
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG 57

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  172 bits (438), Expect = 7e-53
 Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 20/152 (13%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F+ + + +D   +  +IWDTAGQER+ +L   +YR +   ++ + + +  +F    +W K
Sbjct: 44  FLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK 103

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E    A                     P +    + GNK D+  S R V   E +A+  +
Sbjct: 104 EFIYYADVK-----------------EPESFPFVILGNKIDI--SERQVSTEEAQAWCRD 144

Query: 198 NG-LLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
           NG   + ETSAK A NV   F E  +++   E
Sbjct: 145 NGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +K++LLG+  VGKSSL+ R+V  +F      TIG
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG 41

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  171 bits (437), Expect = 7e-53
 Identities = 59/154 (38%), Positives = 83/154 (53%), Gaps = 23/154 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +TV ++   ++ +IWDTAGQER+ T+   YYR A   I+VYDIT++ TF        
Sbjct: 40  FKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFT------- 92

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                   NI      K W K +   A     + L GNK+D+    R V   +GEA A+E
Sbjct: 93  --------NI------KQWFKTVNEHANDEAQLLLVGNKSDM--ETRVVTADQGEALAKE 136

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
            G+ F+E+SAK   NVNEIF  +AK + +K  +N
Sbjct: 137 LGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 170

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 16/34 (47%), Positives = 25/34 (73%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            K++L+G+S VGKS L++RFV  +F+    +TIG
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG 37

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  172 bits (438), Expect = 8e-53
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 23/154 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +TV ++   ++ +IWDTAGQER+ T+   YYR     I+VYD+T+ ++F   K W+ 
Sbjct: 46  FKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLH 105

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           E+ +                         ++   L GNK D    R+ VE  +   +A +
Sbjct: 106 EINQNC----------------------DDVCRILVGNKNDD-PERKVVETEDAYKFAGQ 142

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
            G+   ETSAK  +NV E+F  I + + + + +N
Sbjct: 143 MGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +KL+++G+S VGKSSL+LRF    F     +TIG
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG 43

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  169 bits (430), Expect = 2e-51
 Identities = 52/151 (34%), Positives = 82/151 (54%), Gaps = 23/151 (15%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +TV L    IR +IWDTAGQER++++   YYR+A+  I+VYDIT ++TF        
Sbjct: 63  FKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFD------- 115

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                   ++        W+K + + A  +  + L GNK D   + R +   +GE +A++
Sbjct: 116 --------DL------PKWMKMIDKYASEDAELLLVGNKLDCE-TDREITRQQGEKFAQQ 160

Query: 198 -NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
             G+ F E SAK   NV+EIF+++   + KK
Sbjct: 161 ITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 272 SNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           S++ + +   G + R + +      + +++++G   VGK+SL+ RF    F E  +ST+G
Sbjct: 3   SSHHHHHHSSGLVPRGSPRPAD--FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVG 60

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  165 bits (420), Expect = 1e-49
 Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 31/160 (19%)

Query: 78  FITQTVCLDD----------VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
           F  + V  +             +  ++WDTAGQER+ +L   ++R+A   ++++D+T+Q 
Sbjct: 62  FREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQ 121

Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE 187
           +F   ++W+ +LQ  A                       N  I L GNKADL   +R V 
Sbjct: 122 SFLNVRNWMSQLQANAYCE--------------------NPDIVLIGNKADL-PDQREVN 160

Query: 188 YSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
             +    A++ G+ + ETSA T  NV +    +   + K+
Sbjct: 161 ERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 271 NSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
            S++ + +   G + R +          KL+ LG+S VGK++ + R+   +F+    +T+
Sbjct: 2   GSSHHHHHHSSGLVPRGSGDYDY---LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV 58

Query: 331 G 331
           G
Sbjct: 59  G 59

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  163 bits (414), Expect = 4e-49
 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 31/160 (19%)

Query: 78  FITQTVCLDDV----------TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
           F  + V                I  ++WDTAG ER+ +L   ++R+A   ++++D+TN+ 
Sbjct: 48  FREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQ 107

Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE 187
           +F   ++W+ +LQ  A                       N  I L GNK+DL   +R V+
Sbjct: 108 SFLNVRNWISQLQMHAY--------------------SENPDIVLCGNKSDL-EDQRAVK 146

Query: 188 YSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
             E    AE+ G+ + ETSA    N++     +   + K+
Sbjct: 147 EEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKR 186

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
             K + LG+S VGK+S++ ++  G+F+    +T+G
Sbjct: 11  LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVG 45

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  161 bits (411), Expect = 1e-48
 Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 21/157 (13%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           ++ V L        + DTAGQ+ Y  L   +       ++VY +T+  +F   +S  ++L
Sbjct: 62  SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKL 121

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
                                       + + L GNKADL +  R V+  EG+  AE  G
Sbjct: 122 HEG--------------------HGKTRVPVVLVGNKADL-SPEREVQAVEGKKLAESWG 160

Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGR 236
             FME+SA+       IF ++ +++ + E + GQ  R
Sbjct: 161 ATFMESSARENQLTQGIFTKVIQEIARVENSYGQERR 197

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 9/65 (13%)

Query: 269 MANSNNSNSNGRGGRIQRPN--DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQ 326
           M + ++ +S        R N   Q    +   K+V+LG   VGK+SL  +FV G+F E  
Sbjct: 1   MHHHHHHSS-------GRENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY 53

Query: 327 ESTIG 331
           + T+ 
Sbjct: 54  DPTVE 58

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  158 bits (403), Expect = 1e-47
 Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 21/155 (13%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           T+ + ++      ++ DTAGQ+ Y      Y  +    I+VY +T+  +F   K    +L
Sbjct: 44  TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 103

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
             M                    +    I I L GNK DL    R + Y EG+A AE   
Sbjct: 104 LDM--------------------VGKVQIPIMLVGNKKDLH-MERVISYEEGKALAESWN 142

Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG 234
             F+E+SAK      ++F  I  +  K +    QG
Sbjct: 143 AAFLESSAKENQTAVDVFRRIILEAEKMDGACSQG 177

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
             K+ +LG  +VGKSSL ++FV GQF +  + TI 
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE 40

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  153 bits (389), Expect = 1e-45
 Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 21/152 (13%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
            + V LD   ++ +I DTAGQE Y  +   Y+R+ +  + V+ IT  ++F     + +++
Sbjct: 56  RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 115

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
            R+                        N+   L GNK+DL   +R V   E +  AE+  
Sbjct: 116 LRV--------------------KEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQWN 154

Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
           + ++ETSAKT  NV+++F ++ +++  +++ +
Sbjct: 155 VNYVETSAKTRANVDKVFFDLMREIRARKMED 186

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 287 PNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
               +Q  +  +K++++G   VGKS+L L+F+  +F E  E T  
Sbjct: 8   GGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 52

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  152 bits (387), Expect = 4e-45
 Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 21/172 (12%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
            Q +  D      +I DT G  ++  +  +      A I+V+ +T++ +        K +
Sbjct: 46  RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLI 105

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
            ++                   + +  +I + L GNK D   ++R V+  E +A A+E  
Sbjct: 106 VQI-------------------KGSVEDIPVMLVGNKCDE--TQREVDTREAQAVAQEWK 144

Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCC 251
             FMETSAK   NV E+F E+     ++ ++    G+R  +     +    C
Sbjct: 145 CAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKGKC 196

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            Y++V+ G   VGKSSLVLRFV+G F +    TI 
Sbjct: 8   DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIE 42

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  151 bits (384), Expect = 6e-45
 Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 26/153 (16%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPM---YYRNAQAAIIVYDITNQDTFGRAKS 134
              + + +D   +   ++D   Q        +     +   A +IV+ +T++ +F +   
Sbjct: 39  TYERRIMVDKEEVTLIVYDIWEQGDAG--GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE 96

Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194
            +  L+                 +        ++ + L GNK+DL  SR  V   EG   
Sbjct: 97  TLLRLRA---------------GR-----PHHDLPVILVGNKSDLARSRE-VSLEEGRHL 135

Query: 195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           A       +ETSA    N  E+F    +++  +
Sbjct: 136 AGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +K++L+GES VGKS+L   F   Q     E    
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENS 36

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  150 bits (381), Expect = 4e-44
 Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 26/157 (16%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPM---YYRNAQAAIIVYDITNQDTFGRAKS 134
              + + +D   +   ++D   Q        +     +   A +IV+ +T++ +F +   
Sbjct: 60  TYERRIMVDKEEVTLVVYDIWEQGDAG--GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE 117

Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194
            +  L+                 +        ++ + L GNK+DL  SR  V   EG   
Sbjct: 118 TLLRLRA---------------GR-----PHHDLPVILVGNKSDLARSRE-VSLEEGRHL 156

Query: 195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
           A       +ETSA    N  E+F    +++  +   N
Sbjct: 157 AGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRN 193

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 60.7 bits (148), Expect = 5e-11
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 269 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 328
           M + ++ +S       Q   D        +K++L+GES VGKS+L   F   Q     E 
Sbjct: 1   MHHHHHHSSGRENLYFQGQKD------GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEP 54

Query: 329 TIGGE 333
               +
Sbjct: 55  ENPED 59

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  150 bits (380), Expect = 4e-44
 Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 23/151 (15%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
                +DD  +  EI DTAGQE        + R  +  ++VYDIT++ +F         L
Sbjct: 66  RHQATIDDEVVSMEILDTAGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNIL 124

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
             +                      P N+ + L GNKADL    R V   EGE  A E  
Sbjct: 125 DEIK--------------------KPKNVTLILVGNKADL-DHSRQVSTEEGEKLATELA 163

Query: 200 LLFMETSAKTA-MNVNEIFVEIAKKLPKKEV 229
             F E SA T   N+ EIF E+ +++ ++ +
Sbjct: 164 CAFYECSACTGEGNITEIFYELCREVRRRRM 194

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 65.7 bits (161), Expect = 7e-13
 Identities = 18/59 (30%), Positives = 33/59 (55%)

Query: 273 NNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           ++ +S+G     +    Q+ AK  + KL + G + VGKS+LV+RF+  +F    + T+ 
Sbjct: 4   HHHHSSGVDLGTENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 62

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  149 bits (378), Expect = 4e-44
 Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 21/148 (14%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
            +++ +D       ++D   Q+    L         A +IVY +T++ +F +A     +L
Sbjct: 39  DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQL 98

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
           +R                         ++ I L GNK+DL    R V   EG A A    
Sbjct: 99  RRAR--------------------QTDDVPIILVGNKSDL-VRSREVSVDEGRACAVVFD 137

Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKK 227
             F+ETSA    NV  +F  + +++  +
Sbjct: 138 CKFIETSAALHHNVQALFEGVVRQIRLR 165

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 53.3 bits (129), Expect = 8e-09
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           YK++LLG   VGKS+L   F   +         G
Sbjct: 3   YKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAG 35

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  150 bits (380), Expect = 7e-44
 Identities = 42/174 (24%), Positives = 84/174 (48%), Gaps = 23/174 (13%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
            + V LD   ++ +I DTAGQE Y  +   Y+R+ +  + V+ IT  ++F     + +++
Sbjct: 52  RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 111

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
            R+                        N+   L GNK+DL   R+ V   E +  AE+  
Sbjct: 112 LRVK--------------------EDENVPFLLVGNKSDLEDKRQ-VSVEEAKNRAEQWN 150

Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNG--QGGRRLVETAEAPKTSNCC 251
           + ++ETSAKT  NV+++F ++ +++  +++ +   + G++  ++        CC
Sbjct: 151 VNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGKKKRKSLAKRIRERCC 204

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 14/44 (31%), Positives = 25/44 (56%)

Query: 288 NDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
             + Q  +  +K++++G   VGKS+L L+F+  +F E  E T  
Sbjct: 5   KPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 48

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  147 bits (373), Expect = 3e-43
 Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 23/157 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPM--YYRNAQAAIIVYDITNQDTFGRAKSW 135
              +T+ +D       + DT   E+           +   A +IVY I ++ +F  A   
Sbjct: 40  VYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASEL 99

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
             +L+R                         ++ I L GNKADL   R  V   EG A A
Sbjct: 100 RIQLRR---------------TH-----QADHVPIILVGNKADLARCRE-VSVEEGRACA 138

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNG 232
                 F+ETSA    NV E+F  + ++L  +  ++ 
Sbjct: 139 VVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDSA 175

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 54.5 bits (132), Expect = 4e-09
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
           Y++VLLG+  VGK+SL   F   Q  +  E   
Sbjct: 5   YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG 37

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  147 bits (374), Expect = 3e-43
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 21/152 (13%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           T+   +D +  R +I DTAGQE +  +   Y R     ++V+ I ++ +F        ++
Sbjct: 47  TKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQI 106

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
            R+                        +  + L GNKADL  S+R V  SE  A+   + 
Sbjct: 107 LRVK--------------------DRDDFPVVLVGNKADLE-SQRQVPRSEASAFGASHH 145

Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
           + + E SAK  +NV+E F ++ + + K +   
Sbjct: 146 VAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 177

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            +KLV++G   VGKS+L ++F++  F    + TI 
Sbjct: 9   THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE 43

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  146 bits (372), Expect = 3e-43
 Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 21/148 (14%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
            + V LD   ++ +I DTAGQE Y  +   Y+R+ +  + V+ IT  ++F     + +++
Sbjct: 42  RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 101

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
            R+                        N+   L GNK+DL   +R V   E +  A++  
Sbjct: 102 LRV--------------------KEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRADQWN 140

Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           + ++ETSAKT  NV+++F ++ +++  +
Sbjct: 141 VNYVETSAKTRANVDKVFFDLMREIRAR 168

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +K++++G   VGKS+L L+F+  +F E  E T  
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 38

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  146 bits (372), Expect = 4e-43
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 20/151 (13%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
            Q +  D      +I DT G  ++  +  +      A I+VY IT++ +    K   +++
Sbjct: 41  RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQI 100

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
             +                   +    +I I L GNK D  +  R V+ SE EA A    
Sbjct: 101 CEI-------------------KGDVESIPIMLVGNKCDE-SPSREVQSSEAEALARTWK 140

Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVN 230
             FMETSAK   NV E+F E+     ++ V+
Sbjct: 141 CAFMETSAKLNHNVKELFQELLNLEKRRTVS 171

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 59.4 bits (145), Expect = 7e-11
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            Y++ + G   VGKSSLVLRFV+G F E    T+ 
Sbjct: 3   DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 37

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  145 bits (368), Expect = 1e-42
 Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 21/149 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  + + +D      EI DTAG E++ ++  +Y +N Q  I+VY + NQ +F   K    
Sbjct: 39  FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRD 98

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
           ++ R+                         + + L GNK DL  S R V  SEG A AEE
Sbjct: 99  QIIRVK--------------------RYEKVPVILVGNKVDLE-SEREVSSSEGRALAEE 137

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
            G  FMETSAK+   V+E+F EI +++  
Sbjct: 138 WGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 59.4 bits (145), Expect = 6e-11
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +YK+V+LG   VGKS+L ++FV G F E  + TI 
Sbjct: 3   EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE 37

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  142 bits (361), Expect = 3e-41
 Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 27/172 (15%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
            + V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + +++
Sbjct: 42  RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI 101

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
           +R+                        ++ + L GNK DLP+  R V+  + +  A   G
Sbjct: 102 KRVK--------------------DSEDVPMVLVGNKCDLPS--RTVDTKQAQDLARSYG 139

Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCC 251
           + F+ETSAKT   V++ F  + +++ K +    + G++     +  K+   C
Sbjct: 140 IPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKK-----KKKKSKTKC 186

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +YKLV++G   VGKS+L ++ ++  F +  + TI 
Sbjct: 4   EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE 38

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  142 bits (359), Expect = 4e-41
 Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 23/153 (15%)

Query: 77  AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
               + + +D  T    I + AG          +   A A I V+ + ++++F       
Sbjct: 41  EQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLH 95

Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY-A 195
            +L  +                         + +    ++    +S R V  +   A  A
Sbjct: 96  GQLSSLRGEGRGGL----------------ALALVGTQDRISA-SSPRVVGDARARALXA 138

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
           +     + ET A   +NV+ +F E+A+K+    
Sbjct: 139 DMKRCSYYETXATYGLNVDRVFQEVAQKVVTLR 171

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
           +   I + +L +LG++  GKSSL+ RF+ G +    E T   
Sbjct: 1   SMRSIPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESE 41

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  141 bits (358), Expect = 6e-41
 Identities = 20/164 (12%), Positives = 51/164 (31%), Gaps = 31/164 (18%)

Query: 78  FITQTVCLDD---VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
                + + D     +   +WD AG+E +++  P +       + VYD++          
Sbjct: 41  VKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAE----- 95

Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR--RCVEYSEGE 192
                              K W+  ++  A  + VI L G   D+   +  +       +
Sbjct: 96  ---------------VDAMKPWLFNIKARASSSPVI-LVGTHLDVSDEKQRKACMSKITK 139

Query: 193 AYAEENGL-----LFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
               + G           + + +  + ++   I  +    ++ +
Sbjct: 140 ELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKIRD 183

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 9/37 (24%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEY--QESTIG 331
           + KL+++G +  GK++L+ + ++ +  +   Q +T+G
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVG 38

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  140 bits (355), Expect = 1e-40
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 22/147 (14%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
            + V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + +++
Sbjct: 41  RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
           +R+                        ++ + L GNK+DL    R VE  + +  A   G
Sbjct: 101 KRVK--------------------DSDDVPMVLVGNKSDLAA--RTVESRQAQDLARSYG 138

Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPK 226
           + ++ETSAKT   V + F  + +++ +
Sbjct: 139 IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 59.4 bits (145), Expect = 6e-11
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +YKLV++G   VGKS+L ++ ++  F +  + TI 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE 37

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  141 bits (357), Expect = 2e-40
 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 26/159 (16%)

Query: 78  FITQTVCLDDVTIRFE---IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
              +T+ +D  +       +W+  G+  +        +   A +IVY IT++ +F +A  
Sbjct: 75  TYERTLMVDGESATIILLDMWENKGENEWLH--DHCMQVGDAYLIVYSITDRASFEKASE 132

Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194
              +L+R                +        +I I L GNK+DL    R V  SEG A 
Sbjct: 133 LRIQLRR---------------AR-----QTEDIPIILVGNKSDL-VRCREVSVSEGRAC 171

Query: 195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQ 233
           A      F+ETSA    NV E+F  I +++  +  +  +
Sbjct: 172 AVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 210

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
           Y++VL+GE  VGKS+L   F         +  + GE
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGE 73

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  139 bits (354), Expect = 2e-40
 Identities = 32/149 (21%), Positives = 66/149 (44%), Gaps = 22/149 (14%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
            +   +D+     ++ DTAGQE +  +   Y R     +IVY +T++ +F     + + +
Sbjct: 56  LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 115

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
            R+                        +  + L  NK DL   R+ V   +G+  A +  
Sbjct: 116 LRVKDRE--------------------SFPMILVANKVDLMHLRK-VTRDQGKEMATKYN 154

Query: 200 LLFMETSAKTA-MNVNEIFVEIAKKLPKK 227
           + ++ETSAK   +NV++ F ++ + + ++
Sbjct: 155 IPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 57.6 bits (140), Expect = 4e-10
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            YKLV++G+  VGKS+L ++F +  F +  + TI 
Sbjct: 18  TYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE 52

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  148 bits (375), Expect = 3e-40
 Identities = 21/148 (14%), Positives = 39/148 (26%), Gaps = 26/148 (17%)

Query: 86  DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPP 145
           +     F  WD  GQE  H     +   +   +++ D     T      W++ +++    
Sbjct: 94  ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYG-- 148

Query: 146 NIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMET 205
                                   + +  NK D   S   +E  +           F   
Sbjct: 149 --------------------GKSPVIVVMNKIDENPSYN-IEQKKINERFPAIENRFHRI 187

Query: 206 SAKTAMNVNEIFVEIAKKLPKKEVNNGQ 233
           S K    V  I   +   +   +   G 
Sbjct: 188 SCKNGDGVESIAKSLKSAVLHPDSIYGT 215

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 285 QRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSM 344
            R   +    + + K+ L+G+   GK+SL+ + +   F   +  T G    +  + +   
Sbjct: 29  ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKG 88

Query: 345 PTKNRLNNNVPITF-VW 360
              +  +      F  W
Sbjct: 89  LEND--DELKECLFHFW 103

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  139 bits (353), Expect = 3e-40
 Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 26/163 (15%)

Query: 78  FITQTVCLDDVT---IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
              +T+ +D  +   I  ++W+  G+  +        +   A +IVY IT++ +F +A  
Sbjct: 44  TYERTLMVDGESATIILLDMWENKGENEWLH--DHCMQVGDAYLIVYSITDRASFEKASE 101

Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194
              +L+R                +        +I I L GNK+DL    R V  SEG A 
Sbjct: 102 LRIQLRR---------------AR-----QTEDIPIILVGNKSDL-VRXREVSVSEGRAX 140

Query: 195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRR 237
           A      F+ETSA    NV E+F  I +++  +  +  +  RR
Sbjct: 141 AVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERR 183

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQF-HEYQESTIG 331
           Y++VL+GE  VGKS+L   F       +     +G
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLG 41

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  138 bits (351), Expect = 7e-40
 Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 22/152 (14%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
            + V +D  T   +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + +++
Sbjct: 59  RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQI 118

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
           +R+   +                    ++ + L GNK DLPT  R V+  +    A+  G
Sbjct: 119 KRVKDSD--------------------DVPMVLVGNKCDLPT--RTVDTKQAHELAKSYG 156

Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
           + F+ETSAKT   V + F  + +++ +  +  
Sbjct: 157 IPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 269 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 328
           M + ++ +S       Q           +YKLV++G   VGKS+L ++ ++  F +  + 
Sbjct: 1   MHHHHHHSSGRENLYFQGMT--------EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP 52

Query: 329 TIG 331
           TI 
Sbjct: 53  TIE 55

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  135 bits (341), Expect = 2e-38
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 21/149 (14%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +    +D   +   + DTA  +        Y   A A ++VY + ++ +F  + S+++ L
Sbjct: 59  SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELL 117

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
                        AK            +I   L GNK D+    R V  +EG A A   G
Sbjct: 118 AL----------HAKE--------TQRSIPALLLGNKLDM-AQYRQVTKAEGVALAGRFG 158

Query: 200 LLFMETSAKTAM-NVNEIFVEIAKKLPKK 227
            LF E SA     +V  +F E  ++  ++
Sbjct: 159 CLFFEVSACLDFEHVQHVFHEAVREARRE 187

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 59.9 bits (146), Expect = 7e-11
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 269 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 328
           M + ++ +S       Q P +          L +LG    GKS+L ++F+  +F    + 
Sbjct: 1   MHHHHHHSSGRENLYFQGPLE--------VNLAILGRRGAGKSALTVKFLTKRFISEYDP 52

Query: 329 TIG 331
            + 
Sbjct: 53  NLE 55

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  133 bits (338), Expect = 6e-38
 Identities = 20/151 (13%), Positives = 50/151 (33%), Gaps = 27/151 (17%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
            + + +D  +    I D  G          +     A + V+ + ++ +F    ++   L
Sbjct: 57  KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRL 111

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-PTSRRCVEYSEGEAYAEEN 198
                 +                     + + L G +  +   + R ++ S     + + 
Sbjct: 112 CSFRNAS--------------------EVPMVLVGTQDAISAANPRVIDDSRARKLSTDL 151

Query: 199 GLL-FMETSAKTAMNVNEIFVEIAKKLPKKE 228
               + ET A   +NV  +F ++A+K+    
Sbjct: 152 KRCTYYETCATYGLNVERVFQDVAQKVVALR 182

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 53.7 bits (130), Expect = 9e-09
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 285 QRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            R N   Q    + K+ ++G  + GKS+LV R++ G + + +    G
Sbjct: 10  GRENLYFQGP--ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  132 bits (334), Expect = 1e-37
 Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 22/144 (15%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
            + V +D      EI DTAG E++  +  +Y +N Q   +VY IT Q TF   +   +++
Sbjct: 41  RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI 100

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-N 198
            R               VK        ++ + L GNK DL    R V   +G+  A +  
Sbjct: 101 LR---------------VK-----DTEDVPMILVGNKCDL-EDERVVGKEQGQNLARQWC 139

Query: 199 GLLFMETSAKTAMNVNEIFVEIAK 222
              F+E+SAK+ +NVNEIF ++ +
Sbjct: 140 NCAFLESSAKSKINVNEIFYDLVR 163

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 57.9 bits (141), Expect = 3e-10
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           +YKLV+LG   VGKS+L ++FV+G F E  + TI 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE 37

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  106 bits (267), Expect = 1e-27
 Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 23/143 (16%)

Query: 82  TVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQR 141
            +   +      +WDTAGQE Y  L P+ Y ++   ++ + + N+ +F    +       
Sbjct: 63  VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTK------ 116

Query: 142 MAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-RCVEYSEGEAYAEENGL 200
                         W  E++          L G K DL       V   EG+   ++ G 
Sbjct: 117 --------------WEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC 161

Query: 201 L-FMETSAKTAMNVNEIFVEIAK 222
           + ++E S+   + +NE+F +   
Sbjct: 162 VAYIEASSVAKIGLNEVFEKSVD 184

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 14/57 (24%), Positives = 27/57 (47%)

Query: 275 SNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           SN+      +     + +      K+V++G+ AVGK+ L+L F +G+       T+ 
Sbjct: 1   SNAMLAFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF 57

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  103 bits (259), Expect = 3e-26
 Identities = 43/180 (23%), Positives = 74/180 (41%), Gaps = 34/180 (18%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
           +  V +D   +   +WDTAGQE Y  L P+ YR A   ++ + + ++ ++          
Sbjct: 47  SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASY---------- 96

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-------RCVEYSEGE 192
                 N+        W+ EL+R A PN+ I L G K DL   +         +  ++GE
Sbjct: 97  -----ENVLKK-----WMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGE 145

Query: 193 AYAEENGLL-FMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCC 251
              ++ G   ++E S+KT  NV  +F         K V      + +    +  + S C 
Sbjct: 146 ELRKQIGAAAYIECSSKTQQNVKAVFDTAI-----KVVLQPPRRKEVPRRRKNHRRSGCS 200

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  102 bits (256), Expect = 3e-26
 Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 31/148 (20%)

Query: 85  LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144
           ++  T+   +WDTAGQE Y+ L P+ YR A   I+ + + ++ ++               
Sbjct: 51  VNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKK--------- 101

Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL---------PTSRRCVEYSEGEAYA 195
                      W+ EL+  A P + I L G K DL               +   +GE   
Sbjct: 102 -----------WIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK 149

Query: 196 EENGLL-FMETSAKTAMNVNEIFVEIAK 222
           +  G   ++E S+K+  NV  +F    +
Sbjct: 150 KLIGAPAYIECSSKSQENVKGVFDAAIR 177

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           + +     K V +G+ AVGK+ L++ +    F      T+ 
Sbjct: 2   SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF 42

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  100 bits (252), Expect = 3e-25
 Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 33/152 (21%)

Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           + +    +   IWDTAGQ+ Y  L P++Y +A   ++ +D+T+ ++F             
Sbjct: 75  LQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSF------------- 121

Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEYSEG 191
              NI        W  E+       + I + G K DL                 V Y  G
Sbjct: 122 --DNI-----FNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRG 173

Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIFVEIAK 222
           +  A   G + ++E SA+   NV+ +F E A+
Sbjct: 174 QEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 285 QRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
               ++    +   K+VL+G+   GK+SL++ F  G F E    T+
Sbjct: 22  SMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV 67

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 99.8 bits (249), Expect = 5e-25
 Identities = 37/150 (24%), Positives = 55/150 (36%), Gaps = 33/150 (22%)

Query: 85  LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144
           +D   +   +WDTAGQE Y  L P+ Y +    ++ + I + D+                
Sbjct: 68  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK--------- 118

Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEYSEGEA 193
                      W  E++    PN+ I L GNK DL              +  V   EG  
Sbjct: 119 -----------WTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166

Query: 194 YAEENGLL-FMETSAKTAMNVNEIFVEIAK 222
            A       ++E SAKT   V E+F    +
Sbjct: 167 MANRISAFGYLECSAKTKEGVREVFEMATR 196

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 269 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 328
           M +S++ + +  G     P     A I + KLV++G+ A GK+ L++ F + QF E    
Sbjct: 1   MGSSHHHHHHSSG---LVPRGSHMAAI-RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP 56

Query: 329 TI 330
           T+
Sbjct: 57  TV 58

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 99.1 bits (247), Expect = 9e-25
 Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 33/152 (21%)

Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D   +   +WDTAGQE Y  L P+ Y      +I + + +  +F   ++        
Sbjct: 71  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK------- 123

Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RCVEYSEG 191
                        W  E++    PN  I L G K DL   +             + Y +G
Sbjct: 124 -------------WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 169

Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIFVEIAK 222
            A A+E G + ++E SA T   +  +F E  +
Sbjct: 170 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 97.9 bits (244), Expect = 3e-24
 Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 33/155 (21%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
              + +D   +   +WDTAGQE Y  L P+ Y +    ++ + + + D+           
Sbjct: 63  VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEK---- 118

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEY 188
                           WV E++    PN+ I L  NK DL              +  V  
Sbjct: 119 ----------------WVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRT 161

Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVEIAK 222
            +G A A       ++E SAKT   V E+F    +
Sbjct: 162 DDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 274 NSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
           + +S+G     +    Q+  +    KLV++G+ A GK+ L++ F + +F E    T+
Sbjct: 5   HHHSSGVDLGTENLYFQSMIRK---KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV 58

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 94.8 bits (236), Expect = 4e-23
 Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 36/161 (22%)

Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D   +R ++ DTAGQ+ +  L P+ Y N    ++ + + +  +F             
Sbjct: 61  VSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEK------- 113

Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEYSEG 191
                        WV E++    P   I L G ++DL               + V     
Sbjct: 114 -------------WVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159

Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIF---VEIAKKLPKKE 228
           +  AEE     ++E SA T  N+ E+F   +    +    +
Sbjct: 160 KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDTQ 200

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
             A+    K VL+G+ AVGK+SLV+ +    +      T 
Sbjct: 14  GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA 53

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 93.7 bits (233), Expect = 6e-23
 Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 33/152 (21%)

Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D   +   +WDTAGQE Y  L P+ Y     ++I + + +  +F   ++        
Sbjct: 46  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAK------- 98

Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEYSEG 191
                        W  E++    PN  I L G K DL                 + Y +G
Sbjct: 99  -------------WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 144

Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIFVEIAK 222
            A A+E G + ++E SA T   +  +F E  +
Sbjct: 145 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 91.7 bits (228), Expect = 6e-22
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 34/146 (23%)

Query: 85  LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144
           +D   I   +WDT+G   Y  + P+ Y ++ A +I +DI+  +T                
Sbjct: 71  IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKK--------- 121

Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEYSEGEA 193
                      W  E+Q    PN  + L G K+DL              +  V Y +G  
Sbjct: 122 -----------WKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 169

Query: 194 YAEENGLL-FMETSAKTAMN-VNEIF 217
            A++ G   ++E SA  + N V +IF
Sbjct: 170 MAKQIGAATYIECSALQSENSVRDIF 195

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 269 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 328
            ++ ++ +S+G   R    +     K    K+V++G+S  GK++L+  F +  F E    
Sbjct: 3   SSHHHHHHSSGLVPRGSHMDPNQNVKC---KIVVVGDSQCGKTALLHVFAKDCFPENYVP 59

Query: 329 TI 330
           T+
Sbjct: 60  TV 61

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 90.5 bits (225), Expect = 9e-22
 Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 34/151 (22%)

Query: 85  LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144
           +D   I   +WDT+G   Y  + P+ Y ++ A +I +DI+  +T                
Sbjct: 50  IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKK--------- 100

Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEYSEGEA 193
                      W  E+Q    PN  + L G K+DL              +  V Y +G  
Sbjct: 101 -----------WKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 148

Query: 194 YAEENGLL-FMETSAKTAMN-VNEIFVEIAK 222
            A++ G   ++E SA  + N V +IF     
Sbjct: 149 MAKQIGAATYIECSALQSENSVRDIFHVATL 179

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
           + K+V++G+S  GK++L+  F +  F E    T+
Sbjct: 7   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 40

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 88.3 bits (219), Expect = 6e-21
 Identities = 35/150 (23%), Positives = 55/150 (36%), Gaps = 33/150 (22%)

Query: 85  LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144
           +        ++DTAGQE Y  L P+ Y      +I + + N  +F   K           
Sbjct: 61  VGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEE--------- 111

Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEYSEGEA 193
                      WV EL+  A PN+   L G + DL               + +   +G+ 
Sbjct: 112 -----------WVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK 159

Query: 194 YAEENGLL-FMETSAKTAMNVNEIFVEIAK 222
            A+E G   ++E SA T   +  +F E   
Sbjct: 160 LAKEIGACCYVECSALTQKGLKTVFDEAII 189

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 278 NGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
           +   GR    +      +   K V++G+ AVGK+ L++ +    F E    T+
Sbjct: 2   SPGAGRSSMAHGPGALML---KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV 51

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 88.4 bits (219), Expect = 1e-20
 Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 41/163 (25%)

Query: 85  LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144
            ++  +   +WDT+G   Y  + P+ Y ++ A ++ +DI+  +T   A            
Sbjct: 70  TEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKK--------- 120

Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEYSEGEA 193
                      W  E+     P+  + L G K DL              +  + Y +G A
Sbjct: 121 -----------WRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA 168

Query: 194 YAEENGLL-FMETSAKTAM-NVNEIFVEIA-------KKLPKK 227
            A++ G   ++E SA T+  +++ IF   +         LP+K
Sbjct: 169 IAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSPLPQK 211

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 277 SNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
           S+GR     +     Q  + + KLVL+G+   GK++++    +  + E    T+
Sbjct: 8   SSGRENLYFQGRA-PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV 60

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 84.3 bits (208), Expect = 8e-19
 Identities = 30/167 (17%), Positives = 53/167 (31%), Gaps = 28/167 (16%)

Query: 86  DDVTIRFEIW-------DTAGQERYHTLAPMYYRNAQAAIIVY----DITNQDTFGRAKS 134
           D V  +  I        D   Q    T    Y + A A  +           D  G  + 
Sbjct: 91  DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQD 150

Query: 135 WVKELQRMAPPNID--------------TFGRAKSWVKELQRMAPP-NIVIALAGNKADL 179
           + ++        +D               F     +V  L          I +   K D 
Sbjct: 151 FEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDE 210

Query: 180 PTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
               R +  +   A +++N L  +ETSA++ +NV+  F  + + + K
Sbjct: 211 -GVERYIRDAHTFALSKKN-LQVVETSARSNVNVDLAFSTLVQLIDK 255

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 85.0 bits (210), Expect = 1e-18
 Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 33/152 (21%)

Query: 83  VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
           V +D   +   +WDTAG E Y  L P+ Y      +I + + +  +F             
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF------------- 242

Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEYSEG 191
              ++    RAK W  E++    PN  I L G K DL                 + Y +G
Sbjct: 243 --HHV----RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294

Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIFVEIAK 222
            A A+E G + ++E SA T   +  +F E  +
Sbjct: 295 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 65.2 bits (159), Expect = 1e-12
 Identities = 24/154 (15%), Positives = 47/154 (30%), Gaps = 21/154 (13%)

Query: 77  AFITQTVCLDDVT---IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK 133
            F    + + +V     RF ++   GQ  Y+    +  R     + V D         A+
Sbjct: 58  FFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAE 117

Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193
           S  + ++                      +   ++ I +  NK DLP +           
Sbjct: 118 SM-RNMRENL---------------AEYGLTLDDVPIVIQVNKRDLPDALPVEMVR--AV 159

Query: 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
              E     +E  A     V E   E+++ +  +
Sbjct: 160 VDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 22/142 (15%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           ++  +WD  GQ         YY +  A I V D T++D    A    KEL  M       
Sbjct: 62  LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTAS---KELHLM------- 111

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
                     LQ     +  + +  NK D P +    E S+       ++     + +SA
Sbjct: 112 ----------LQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA 161

Query: 208 KTAMNVNEIFVEIAKKLPKKEV 229
                + E    +   + ++++
Sbjct: 162 IKGEGITEGLDWLIDVIKEEQL 183

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 20/128 (15%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           + F ++D +GQ RY  L   YY+  QA I V D +++     AK   +EL  +       
Sbjct: 67  LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAK---EELDTLL------ 117

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
                        +    I I    NK DL  +   V+ S+       ++       + A
Sbjct: 118 ---------NHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDA 168

Query: 208 KTAMNVNE 215
                + E
Sbjct: 169 IKGEGLQE 176

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 50.3 bits (121), Expect = 9e-08
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 22/140 (15%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I F +WD  GQ++   L   Y++N Q  I V D  +++    A+   +EL RM       
Sbjct: 44  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRM------- 93

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
                     L      + V+ +  NK DLP +    E ++  G             T A
Sbjct: 94  ----------LAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCA 143

Query: 208 KTAMNVNEIFVEIAKKLPKK 227
            +   + E    ++ +L  +
Sbjct: 144 TSGDGLYEGLDWLSNQLRNQ 163

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 22/143 (15%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I FE+WD  GQ         Y+ +  A I V D T++D  G AK    EL  +       
Sbjct: 66  ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAK---HELYALLD----- 117

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
                    EL+       ++ +  NK DLP +    E +E  G +         +++S+
Sbjct: 118 -------EDELR-----KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSS 165

Query: 208 KTAMNVNEIFVEIAKKLPKKEVN 230
           KT   + E    + ++L ++ + 
Sbjct: 166 KTGDGLVEGMDWLVERLREQGLG 188

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 22/141 (15%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           ++F++WD  G          YY N  A I V D  ++D  G +K    EL  M       
Sbjct: 51  LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISK---SELVAMLE----- 102

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
                   +EL+       ++ +  NK D+  +    E +   G    ++      +TSA
Sbjct: 103 -------EEELR-----KAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSA 150

Query: 208 KTAMNVNEIFVEIAKKLPKKE 228
                ++E    + + L  ++
Sbjct: 151 TKGTGLDEAMEWLVETLKSRQ 171

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 22/140 (15%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
            RF +WD  GQE   +    YY N +  I+V D T+++     +   +EL +M       
Sbjct: 60  TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKMLA----- 111

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
                   ++L+        + +  NK D+       E S+       +++        A
Sbjct: 112 -------HEDLR-----KAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159

Query: 208 KTAMNVNEIFVEIAKKLPKK 227
            T   + +    +  +L  +
Sbjct: 160 LTGEGLCQGLEWMMSRLKIR 179

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 22/140 (15%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I F +WD  GQ++   L   Y++N Q  I V D  +++    +     ELQ+M       
Sbjct: 73  ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESA---DELQKMLQ----- 124

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
                    EL+     + V+ +  NK D+P +    E ++  G  +          T A
Sbjct: 125 -------EDELR-----DAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCA 172

Query: 208 KTAMNVNEIFVEIAKKLPKK 227
                + +    ++ +L K+
Sbjct: 173 TQGTGLYDGLDWLSHELSKR 192

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 34/180 (18%), Positives = 56/180 (31%), Gaps = 41/180 (22%)

Query: 65  INVVFYPYLFS-AAFITQTVCLDDVTIR------FEIWDTAGQERYHTLAP---MYYRNA 114
             VVF+    +   F+  T  +    I       F+IWD  GQ  +        M +R  
Sbjct: 37  QKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT 96

Query: 115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAG 174
            A I V D  +                      +   R    V +  ++ P         
Sbjct: 97  GALIYVIDAQDDYM-------------------EALTRLHITVSKAYKVNPDMNFEVFI- 136

Query: 175 NKADLPTSRRCVEYSE----------GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
           +K D  +    +E              +A  E+  L F  TS     ++ E F ++ +KL
Sbjct: 137 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDH-SIFEAFSKVVQKL 195

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 22/140 (15%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
            +  IWD  GQ+   +    Y+ +    I V D  ++      +   +ELQ +       
Sbjct: 62  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQ---RELQSLLV----- 113

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
                   + L         + +  NK DLP +  C    E         +       SA
Sbjct: 114 -------EERLA-----GATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSA 161

Query: 208 KTAMNVNEIFVEIAKKLPKK 227
            T  ++      +   +  +
Sbjct: 162 VTGEDLLPGIDWLLDDISSR 181

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 22/140 (15%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
            +  +WD  GQ +       Y+ N    I V D  ++  F       +EL  +       
Sbjct: 60  FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETG---QELTELLE----- 111

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
                   ++L       + + +  NK DL T+    E +E        +        SA
Sbjct: 112 -------EEKLS-----CVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSA 159

Query: 208 KTAMNVNEIFVEIAKKLPKK 227
            T   V +    + K +  K
Sbjct: 160 LTGEGVQDGMNWVCKNVNAK 179

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 22/128 (17%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
            RF +WD  GQE   +    YY N +  I+V D T+++     +   +EL +M       
Sbjct: 65  TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKMLA----- 116

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
                   ++L+        + +  NK D+       E S+       +++        A
Sbjct: 117 -------HEDLR-----KAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 164

Query: 208 KTAMNVNE 215
            T   + +
Sbjct: 165 LTGEGLCQ 172

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 47.9 bits (115), Expect = 8e-07
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 20/101 (19%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           +  ++WD  GQ R+ ++   Y R   A + + D  +Q+    +K    EL  +       
Sbjct: 67  VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK---NELHNL------- 116

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
                     L +     I + + GNK DLP +    E  E
Sbjct: 117 ----------LDKPQLQGIPVLVLGNKRDLPGALDEKELIE 147

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 20/101 (19%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I F +WD  GQ++   L   Y++N Q  I V D  +++    A+   +EL RM       
Sbjct: 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRM------- 258

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
                     L      + V+ +  NK DLP +    E ++
Sbjct: 259 ----------LAEDELRDAVLLVFANKQDLPNAMNAAEITD 289

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 20/101 (19%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           + F  +D  G  +   +   Y       + + D  + +    +K   +EL  +     + 
Sbjct: 69  MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESK---EELDSLM--TDE- 122

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
                     +      N+ I + GNK D P +       E
Sbjct: 123 ---------TIA-----NVPILILGNKIDRPEAISEERLRE 149

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 20/101 (19%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           I+F  +D  G  +   L   Y+      + + D  + + F  A+    EL  +   NI  
Sbjct: 67  IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEAR---VELDALF--NIA- 120

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
                    EL+     ++   + GNK D P +    E   
Sbjct: 121 ---------ELK-----DVPFVILGNKIDAPNAVSEAELRS 147

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 22/99 (22%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAI--IVYDI---TNQDTFGRAKSWVKELQRMAP 144
               + D  G  +       Y +     +  +++ +    +           + L  +  
Sbjct: 91  SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTA---EFLVDI-- 145

Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR 183
                       +   +      I I +A NK++L T+R
Sbjct: 146 ------------LSITESSCENGIDILIACNKSELFTAR 172

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 23/148 (15%), Positives = 53/148 (35%), Gaps = 33/148 (22%)

Query: 90  IRFEIWDTAGQERY-----HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144
           +   +WD  GQ+ +            ++  Q  I V+D+ + +        +K+++    
Sbjct: 52  MTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTE-------VLKDIEIF-- 102

Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-PTSRRCVEYSEGEAYAEE------ 197
                       +K+L++ + P+  I +  +K DL    +R   +        E      
Sbjct: 103 ---------AKALKQLRKYS-PDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG 152

Query: 198 -NGLLFMETSAKTAMNVNEIFVEIAKKL 224
              L+   TS     ++ + + +I   L
Sbjct: 153 FPNLIGFPTSIWD-ESLYKAWSQIVCSL 179

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 4e-05
 Identities = 51/430 (11%), Positives = 117/430 (27%), Gaps = 147/430 (34%)

Query: 1   YVLIHGT--CG-STLQTIEYALTVRVLKLKTQIPKG-NWFSMMSGKRQSDCMAQIW-LKD 55
            VLI G    G + +            K++ ++     W ++ +       +  +  L  
Sbjct: 152 NVLIDGVLGSGKTWVA----LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 56  RVDCM-TQIVINVVFYPYLFSAA------FITQTV---CL---DDVTIRFEIWD------ 96
           ++D   T    +         +        +       CL    +V    + W+      
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-KAWNAFNLSC 266

Query: 97  -----TAGQERYHTLAPMYYRNAQAAIIVYDIT---NQDTFGRAKS------WV------ 136
                T    R+  +      +  +A     I+   +  T    +       ++      
Sbjct: 267 KILLTT----RFKQVT-----DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 137 --KELQRMAPPNIDTFG--------RAKSW----VKELQRMAPPNIVIALAGNKADLPTS 182
             +E+    P  +               +W      +L        +I  + N  +    
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT------IIESSLNVLEPAEY 371

Query: 183 RRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIF--------VE-IAKKLPKKEVNNGQ 233
           R+   +   +  +     +F   SA     +  +         V  +  KL K       
Sbjct: 372 RKM--F---DRLS-----VFPP-SAHIPTILLSLIWFDVIKSDVMVVVNKLHKY------ 414

Query: 234 GGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTMANSNNSNSNGRGGRIQRPNDQT-- 291
               LVE  + PK            +   SI  + +             +++  N+    
Sbjct: 415 ---SLVE--KQPK------------ESTISIPSIYLEL-----------KVKLENEYALH 446

Query: 292 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLN 351
           ++ +  Y +            L+  ++   F+ +    IG      H  +   P +  L 
Sbjct: 447 RSIVDHYNI----PKTFDSDDLIPPYLDQYFYSH----IG-----HHLKNIEHPERMTLF 493

Query: 352 NNVPITFVWV 361
             V + F ++
Sbjct: 494 RMVFLDFRFL 503

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 13/117 (11%), Positives = 32/117 (27%), Gaps = 22/117 (18%)

Query: 79  ITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI--IVYDI---TNQDTFGRAK 133
                  D       + D  G  +       Y +     +  +++ +    +        
Sbjct: 44  QEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTA 103

Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
              + L  +              +   +      I I +A NK++L T+R   +  +
Sbjct: 104 ---EFLVDI--------------LSITESSCENGIDILIACNKSELFTARPPSKIKD 143

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 13/102 (12%), Positives = 31/102 (30%), Gaps = 18/102 (17%)

Query: 90  IRFEIWDTAGQERY-HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNID 148
               + D  G E     L   +  +A+A + V D        +  +  + L ++      
Sbjct: 54  NSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVA--EFLYQVLI---- 107

Query: 149 TFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
                        + +P  ++     NK D+  ++      +
Sbjct: 108 --------DSMALKNSPSLLIAC---NKQDIAMAKSAKLIQQ 138

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 25/105 (23%)

Query: 80  TQTVCLDDVT--IRFEIWDTAGQERYHTLA---PMYYRNAQAAIIVYDITNQDTFGRAKS 134
           T    L+  +  I   + +  GQ  Y   +      +++  A + V D  ++        
Sbjct: 34  TSNPSLEHFSTLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEY------- 86

Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179
                       I+        ++   ++  P+I I +  +K D 
Sbjct: 87  ------------INAITNLAMIIEYAYKVN-PSINIEVLIHKVDG 118

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	373
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.97
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.96
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.96
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.96
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.96
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.96
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.96
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.96
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.96
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.96
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.96
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.96
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.96
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.96
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.96
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.96
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.96
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.96
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.96
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.96
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.96
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.96
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.96
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.96
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.96
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.96
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.96
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.95
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.95
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.95
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.95
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.95
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.95
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.95
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.95
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.95
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.95
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.95
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.95
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.95
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.95
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.95
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.95
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.95
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.95
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.95
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.95
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.95
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.95
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.95
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.95
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.95
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.95
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.95
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.95
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.95
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.95
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.95
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.95
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.95
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.95
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.94
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.94
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.94
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.94
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.94
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.94
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.94
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.94
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.94
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.94
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.94
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.94
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.94
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.94
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.94
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.93
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.93
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.93
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.93
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.92
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.92
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.92
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.92
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.92
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.92
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.92
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.92
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.92
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.92
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.92
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.91
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.91
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.91
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.91
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.91
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.91
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.91
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.89
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.89
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.89
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.88
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.87
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.86
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.86
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.86
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.86
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.85
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.85
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.84
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.84
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.83
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.82
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.82
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.81
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.81
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.8
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.79
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.78
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.77
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.76
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.76
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.76
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.76
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.74
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.74
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.72
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.72
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.71
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.71
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.71
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.71
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.7
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.69
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.69
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.69
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.69
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.68
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.68
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.68
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.66
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.65
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.64
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.64
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.64
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.64
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.64
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.63
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.63
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.63
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.62
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.62
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.62
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.61
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.61
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.61
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.6
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.59
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.58
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.58
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.58
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.57
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.57
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.55
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.54
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.54
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.54
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.52
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.51
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.5
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.5
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.45
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.43
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.43
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.42
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.4
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.39
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.39
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.39
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.39
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.37
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.37
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.36
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.34
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.31
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.3
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.29
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.28
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.27
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.24
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.24
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.18
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.12
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.11
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	99.11
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.1
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.06
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.06
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.99
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.96
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.96
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.91
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.91
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.87
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.79
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.78
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.78
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.74
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.71
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.67
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.65
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.65
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.64
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.63
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.63
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.61
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.61
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.6
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.6
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.6
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.59
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.59
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.58
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.57
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	98.57
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.56
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.55
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.54
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.54
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.54
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.53
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.52
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.52
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.52
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.52
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.51
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.51
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.51
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.51
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.51
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.51
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.51
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.51
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.51
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.51
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.5
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.5
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.5
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.48
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.48
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.48
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.47
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.46
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.46
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.46
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.46
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.46
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.45
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.45
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.45
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.44
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.43
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.43
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.43
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.42
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.42
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.42
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.42
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.41
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.41
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.41
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.4
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.39
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.39
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.38
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.38
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.38
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.38
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.37
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.35
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.35
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.35
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.34
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.34
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.33
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.66
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.31
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.3
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.29
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.26
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.26
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.26
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.24
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.23
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.22
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.21
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.17
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.13
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.08
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.06
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	98.05
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.01
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	97.99
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.94
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.93
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	97.92
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.89
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.88
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.88
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.87
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.87
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.86
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.86
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.83
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	97.81
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	97.79
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	97.63
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	97.57
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.55
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.51
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.5
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.44
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.4
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.4
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.35
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.35
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.34
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	97.33
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.27
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.22
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.22
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	97.22
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.21
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.2
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.17
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.12
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	97.11
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.06
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.05
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.0
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.97
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.91
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.89
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.87
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.77
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.65
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	96.65
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	96.59
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.58
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.54
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.45
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	96.38
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.37
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	96.21
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.02
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	95.88
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	95.88
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.67
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	95.64
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.32
1wxq_A	397	GTP-binding protein; structural genomics, riken st	95.14
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	95.05
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	94.92
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	94.84
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	94.79
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	94.78
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	94.74
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	94.69
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	94.67
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	94.48
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	94.39
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	94.08
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	93.99
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	93.97
1wb1_A	482	Translation elongation factor SELB; selenocysteine	93.66
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	93.44
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	92.77
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	92.52
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	92.52
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	92.22
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	92.21
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	92.11
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	92.0
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	91.83
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	91.59
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	91.49
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	91.47
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	91.45
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	91.29
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	91.05
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	91.03
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	90.96
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	90.84
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	90.66
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	90.37
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	90.31
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	89.88
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	89.7
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	89.03
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	88.98
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	88.88
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	88.78
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	88.26
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	88.2
3uc9_A	233	Increased recombination centers protein 6; rossman	87.87
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	87.83
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	86.71
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	86.64
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	86.55
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	86.38
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	85.26
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	84.53
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	84.2
3cwq_A	209	Para family chromosome partitioning protein; alpha	83.08
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	83.03
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	81.72
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	80.52

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=7.9e-37  Score=275.35  Aligned_cols=163  Identities=35%  Similarity=0.623  Sum_probs=141.5

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ...+|+++||+   |||||++||+.+.|...   |+|.++..+.+.+++..+.++||||+|+++|..+++.|++++++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            34589999998   99999999999999877   9999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||+++++||+.+..|+..+..                     ...+++|++|||||+|+.+. +.++.++++++|+.+
T Consensus        91 lv~di~~~~Sf~~i~~~~~~i~~---------------------~~~~~~piilVgNK~Dl~~~-r~V~~~e~~~~a~~~  148 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKWIDDVRT---------------------ERGSDVIIMLVGNKTDLADK-RQVSIEEGERKAKEL  148 (216)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHH---------------------HHTTSSEEEEEEECTTCGGG-CCSCHHHHHHHHHHH
T ss_pred             EEeecchhHHHHHHHHHHHHHHH---------------------hcCCCCeEEEEeeccchHhc-CcccHHHHhhHHHHh
Confidence            99999999999999999998877                     34568999999999999776 789999999999999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      +++|+||||++|.||+++|+.|++.+.....
T Consensus       149 ~~~~~e~SAktg~nV~e~F~~i~~~i~~~~~  179 (216)
T 4dkx_A          149 NVMFIETSAKAGYNVKQLFRRVAAALPGMES  179 (216)
T ss_dssp             TCEEEEEBTTTTBSHHHHHHHHHHHC-----
T ss_pred             CCeeEEEeCCCCcCHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999875443

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.97  E-value=3.7e-29  Score=222.30  Aligned_cols=161  Identities=34%  Similarity=0.628  Sum_probs=146.2

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ...++++++|.   |||||+++|.+..+...   |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi   85 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   85 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence            45689999997   99999999999988765   8888998889999999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||++++.+|+.+..|+..+..                     ....++|++||+||+|+.+. +.+..+++.++++.+
T Consensus        86 lv~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~  143 (206)
T 2bcg_Y           86 IVYDVTDQESFNGVKMWLQEIDR---------------------YATSTVLKLLVGNKCDLKDK-RVVEYDVAKEFADAN  143 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCTTT-CCSCHHHHHHHHHHT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECCCCccc-cccCHHHHHHHHHHc
Confidence            99999999999999999988876                     33467899999999999765 668888999999999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +++++++||++|.||+++|++|++.+.+.
T Consensus       144 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          144 KMPFLETSALDSTNVEDAFLTMARQIKES  172 (206)
T ss_dssp             TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.96  E-value=9e-29  Score=215.21  Aligned_cols=162  Identities=33%  Similarity=0.578  Sum_probs=118.0

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|.   |||||+++|+++.+...   |++.++..+.+.+++..+.+.+|||+|+++|..++..+++++|++++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   86 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   86 (183)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence            4688999997   99999999999988765   88888888889999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++++.+|+.+..|+..+..                     ....++|++||+||+|+.+. +.+..+++.++++.++
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~~~  144 (183)
T 2fu5_C           87 VYDITNEKSFDNIRNWIRNIEE---------------------HASADVEKMILGNKCDVNDK-RQVSKERGEKLALDYG  144 (183)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH---------------------HSCTTCEEEEEEEC--CCSC-CCSCHHHHHHHHHHHT
T ss_pred             EEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECccCCcc-CcCCHHHHHHHHHHcC
Confidence            9999999999999999988876                     33467899999999999765 6688899999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      ++++++||+++.||+++|++|++.+.++..
T Consensus       145 ~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~  174 (183)
T 2fu5_C          145 IKFMETSAKANINVENAFFTLARDIKAKMD  174 (183)
T ss_dssp             CEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999998876544

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.96  E-value=3.2e-28  Score=210.96  Aligned_cols=163  Identities=54%  Similarity=0.854  Sum_probs=145.5

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      .+...++++++|.   |||||+++|++..+...   |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            3455689999997   99999999999988765   88888888899999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE  196 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~  196 (373)
                      +++|||++++.+|+.+..|+..+..                     ...+++|+++|+||+|+.+. +.+..+++.++++
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~p~i~v~nK~Dl~~~-~~~~~~~~~~~~~  145 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQA---------------------QGNPNMVMALAGNKSDLLDA-RKVTAEDAQTYAQ  145 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCTTT-CCSCHHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECCccccc-ccCCHHHHHHHHH
Confidence            9999999999999999999998877                     33468999999999999765 6688889999999


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      .++++++++||++|.||+++|++|++.+.+.
T Consensus       146 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  176 (181)
T 2efe_B          146 ENGLFFMETSAKTATNVKEIFYEIARRLPRV  176 (181)
T ss_dssp             HTTCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred             HcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999888643

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.4e-28  Score=218.88  Aligned_cols=164  Identities=30%  Similarity=0.586  Sum_probs=147.6

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      .....++++++|.   |||||+++|+++.+...   |++.++..+.+.+++..+.+.+|||+|+++|..++..+++++|+
T Consensus        22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (201)
T 2ew1_A           22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA  101 (201)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence            3445689999997   99999999999988765   88899988999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE  196 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~  196 (373)
                      +++|||++++.+|+.+..|+..+..                     ....++|++||+||+|+.+. +.+..+++.++++
T Consensus       102 ~i~v~D~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~NK~Dl~~~-~~v~~~~~~~~~~  159 (201)
T 2ew1_A          102 LILTYDITCEESFRCLPEWLREIEQ---------------------YASNKVITVLVGNKIDLAER-REVSQQRAEEFSE  159 (201)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECGGGGGG-CSSCHHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECCCCccc-cccCHHHHHHHHH
Confidence            9999999999999999999998876                     33467899999999999754 6688889999999


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      ..+++++++||++|.||+++|++|++.+.++.
T Consensus       160 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~  191 (201)
T 2ew1_A          160 AQDMYYLETSAKESDNVEKLFLDLACRLISEA  191 (201)
T ss_dssp             HHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999887543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=218.93  Aligned_cols=163  Identities=33%  Similarity=0.549  Sum_probs=141.5

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      ....++++++|.   |||||+++|+++.+...   |++.++..+.+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            345688999997   99999999999988765   888889888999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160        118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE  197 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~  197 (373)
                      |+|||++++.+|+.+..|+..+..                     ....++|++||+||+|+.+. +.+..+++.++++.
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~NK~Dl~~~-~~v~~~~~~~~~~~  163 (201)
T 2hup_A          106 ILAYDITKRSSFLSVPHWIEDVRK---------------------YAGSNIVQLLIGNKSDLSEL-REVSLAEAQSLAEH  163 (201)
T ss_dssp             EEEEETTBHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCGGG-CCSCHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECCccccc-cccCHHHHHHHHHH
Confidence            999999999999999999988877                     33467999999999999764 66888999999999


Q ss_pred             cCC-eEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        198 NGL-LFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       198 ~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      +++ +++++||+++.||+++|++|++.+.++.
T Consensus       164 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          164 YDILCAIETSAKDSSNVEEAFLRVATELIMRH  195 (201)
T ss_dssp             TTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            999 9999999999999999999999887543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.96  E-value=5e-28  Score=212.58  Aligned_cols=164  Identities=41%  Similarity=0.673  Sum_probs=146.2

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      ....++++++|.   |||||+++|+++.+...   |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   97 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   97 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence            345689999997   99999999999998765   888888888999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160        118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE  197 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~  197 (373)
                      ++|||++++.+|+.+..|+..+..                     ....++|++||+||+|+.+. +.+..+++.++++.
T Consensus        98 i~v~d~~~~~s~~~~~~~l~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~  155 (191)
T 2a5j_A           98 LLVYDITRRETFNHLTSWLEDARQ---------------------HSSSNMVIMLIGNKSDLESR-RDVKREEGEAFARE  155 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCGGG-CCSCHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECcccCCc-cccCHHHHHHHHHH
Confidence            999999999999999999988876                     34468999999999999764 56888899999999


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      ++++++++||+++.||+++|++|++.+.++..
T Consensus       156 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  187 (191)
T 2a5j_A          156 HGLIFMETSAKTACNVEEAFINTAKEIYRKIQ  187 (191)
T ss_dssp             HTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998876543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.5e-28  Score=220.11  Aligned_cols=162  Identities=34%  Similarity=0.555  Sum_probs=140.9

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ...++++++|.   |||||+++|++..+...   |++.++..+.+.+++..+.+.||||+|+++|..++..+++.+|++|
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            45688999997   99999999999988765   8888898889999999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||++++.+|+.+..|+..+..                     ....++|++||+||+|+... +.+..+++.++++..
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~~  148 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRE---------------------NADDNVAVGLIGNKSDLAHL-RAVPTEESKTFAQEN  148 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHH---------------------HCC--CEEEEEECCGGGGGG-CCSCHHHHHHHHHHT
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEECcccccc-cccCHHHHHHHHHHc
Confidence            99999999999999999998876                     33467899999999999764 568888999999999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      +++++++||+++.||+++|++|++.+.++.
T Consensus       149 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  178 (223)
T 3cpj_B          149 QLLFTETSALNSENVDKAFEELINTIYQKV  178 (223)
T ss_dssp             TCEEEECCCC-CCCHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999887543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.96  E-value=4.1e-28  Score=209.45  Aligned_cols=162  Identities=40%  Similarity=0.667  Sum_probs=145.2

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      .....++++++|.   |||||+++|++..+...   |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            3455689999997   99999999999988765   88888888889999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE  196 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~  196 (373)
                      +++|||++++.+++.+..|+..+..                     ....++|+++|+||+|+.+. +.+..+++.++++
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~  148 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARN---------------------LTNPNTVIILIGNKADLEAQ-RDVTYEEAKQFAE  148 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCGGG-CCSCHHHHHHHHH
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECcccccc-cccCHHHHHHHHH
Confidence            9999999999999999999988876                     33467899999999999754 5678889999999


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .++++++++||+++.||+++|++|++.+.+
T Consensus       149 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          149 ENGLLFLEASAKTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             HTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             HcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999987753

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.96  E-value=3.7e-28  Score=215.12  Aligned_cols=165  Identities=25%  Similarity=0.426  Sum_probs=143.6

Q ss_pred             CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCc
Q psy18160         42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQ  115 (373)
Q Consensus        42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad  115 (373)
                      .+....++++++|.   |||||+++|.++.+...   |.+..+ ...+.+++..+.+.+|||+|++++..++..+++.+|
T Consensus         9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   87 (206)
T 2bov_A            9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   87 (206)
T ss_dssp             --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence            34456789999997   99999999999987665   666555 467788999999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH
Q psy18160        116 AAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA  195 (373)
Q Consensus       116 ~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~  195 (373)
                      ++++|||++++.+|+.+..|+..+...                    ....++|++||+||+|+.+. +.+..+++.+++
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~  146 (206)
T 2bov_A           88 GFLCVFSITEMESFAATADFREQILRV--------------------KEDENVPFLLVGNKSDLEDK-RQVSVEEAKNRA  146 (206)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHH--------------------TTCSCCCEEEEEECTTCGGG-CCSCHHHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEeccCcccc-ccccHHHHHHHH
Confidence            999999999999999999999988772                    22357899999999999765 568888999999


Q ss_pred             HHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       196 ~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      +.++++++++||++|.||+++|++|++.+.+++
T Consensus       147 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~  179 (206)
T 2bov_A          147 EQWNVNYVETSAKTRANVDKVFFDLMREIRARK  179 (206)
T ss_dssp             HHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHcc
Confidence            999999999999999999999999999887653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.96  E-value=4.8e-28  Score=210.18  Aligned_cols=164  Identities=27%  Similarity=0.369  Sum_probs=143.5

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      +...++++++|.   |||||+++|+++.+...   |++..+ .+.+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            345789999998   99999999998887765   777777 67888999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160        118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE  197 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~  197 (373)
                      ++|||++++.+|+.+..|+..+...                    ....++|++||+||+|+.+. +.+..++++++++.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~  140 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKVIHGKLLDM--------------------VGKVQIPIMLVGNKKDLHME-RVISYEEGKALAES  140 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH--------------------C----CCEEEEEECTTCTTT-CCSCHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECccchhc-ceecHHHHHHHHHH
Confidence            9999999999999999999888662                    23357899999999999765 77899999999999


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      ++++++++||+++.||+++|++|++.+.+...
T Consensus       141 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  172 (181)
T 3t5g_A          141 WNAAFLESSAKENQTAVDVFRRIILEAEKMDG  172 (181)
T ss_dssp             TTCEEEECCTTSHHHHHHHHHHHHHHHHTC--
T ss_pred             hCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999998876543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.96  E-value=3.1e-28  Score=215.36  Aligned_cols=167  Identities=17%  Similarity=0.208  Sum_probs=140.0

Q ss_pred             cCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCc--Cc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc-cchhhcc
Q psy18160         40 SGKRQSDCMAQIWLKD---RVDCMTQIVINVVFY--PY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT-LAPMYYR  112 (373)
Q Consensus        40 ~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~--~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~-l~~~~~~  112 (373)
                      .+++....++++++|.   |||||+++|++..+.  .. +.+.++..+.+.+++..+.+.+|||+|++++.. ++..+++
T Consensus        16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~   95 (195)
T 3cbq_A           16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ   95 (195)
T ss_dssp             ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred             CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc
Confidence            3444556789999997   999999999865443  22 667777788889999999999999999998775 7888999


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH
Q psy18160        113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE  192 (373)
Q Consensus       113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~  192 (373)
                      ++|++|+|||++++.+|+.+..|+..+...                    ....++|++|||||+|+.+. +.++.++++
T Consensus        96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~v~~~~~~  154 (195)
T 3cbq_A           96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAG--------------------RPHHDLPVILVGNKSDLARS-REVSLEEGR  154 (195)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHH--------------------STTSCCCEEEEEECTTCTTT-CCSCHHHHH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEeechhcccc-CCcCHHHHH
Confidence            999999999999999999999999888762                    12257899999999999765 678889999


Q ss_pred             HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        193 AYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       193 ~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      ++++.++++++++||+++.||+++|++|++.+.+.
T Consensus       155 ~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          155 HLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR  189 (195)
T ss_dssp             HHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999988643

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.96  E-value=1.1e-27  Score=210.42  Aligned_cols=163  Identities=36%  Similarity=0.646  Sum_probs=147.6

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ...++++++|.   |||||+++|++..+...   +++.++....+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            45678999997   99999999999988766   8888888899999999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||++++.+|+.+..|+..+..                     ....++|++||+||+|+.+. +.+..+++.++++.+
T Consensus        94 ~v~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~  151 (196)
T 3tkl_A           94 VVYDVTDQESFNNVKQWLQEIDR---------------------YASENVNKLLVGNKCDLTTK-KVVDYTTAKEFADSL  151 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCTTT-CCSCHHHHHHHHHHT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECcccccc-cccCHHHHHHHHHHc
Confidence            99999999999999999998877                     34468999999999999776 678888999999999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      +++++++||+++.||+++|++|++.+.++..
T Consensus       152 ~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~  182 (196)
T 3tkl_A          152 GIPFLETSAKNATNVEQSFMTMAAEIKKRMG  182 (196)
T ss_dssp             TCCEEEECTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred             CCcEEEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999876544

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.96  E-value=1.2e-27  Score=209.68  Aligned_cols=161  Identities=31%  Similarity=0.548  Sum_probs=145.1

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ...++++++|.   |||||+++|++..+...   |+|.++..+.+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   99 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL   99 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence            34688999997   99999999999988765   8888888888889999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||++++.+|+.+..|+..+..                     ....++|++||+||+|+.+. +.+..++++++++.+
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~  157 (189)
T 2gf9_A          100 LMYDIANQESFAAVQDWATQIKT---------------------YSWDNAQVILVGNKCDLEDE-RVVPAEDGRRLADDL  157 (189)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCGGG-CCSCHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECcccccc-cCCCHHHHHHHHHHc
Confidence            99999999999999999988877                     33468899999999999765 567788899999999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +++++++||++|.||+++|++|++.+.++
T Consensus       158 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          158 GFEFFEASAKENINVKQVFERLVDVICEK  186 (189)
T ss_dssp             TCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.96  E-value=7e-28  Score=206.04  Aligned_cols=158  Identities=63%  Similarity=0.999  Sum_probs=143.3

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|.   |||||+++|+++.+...   |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   84 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence            4578999997   99999999999988765   88888888889999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++++.+++.+..|+..+..                     ...+++|+++|+||+|+.+. +.+..+++.++++..+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~iilv~nK~Dl~~~-~~~~~~~~~~~~~~~~  142 (170)
T 1r2q_A           85 VYDITNEESFARAKNWVKELQR---------------------QASPNIVIALSGNKADLANK-RAVDFQEAQSYADDNS  142 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH---------------------HSCTTCEEEEEEECGGGGGG-CCSCHHHHHHHHHHTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECccCccc-cccCHHHHHHHHHHcC
Confidence            9999999999999999988876                     34468999999999999754 5678889999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++++++||++|.|++++|++|++.+.
T Consensus       143 ~~~~~~Sa~~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          143 LLFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             CEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999998775

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.96  E-value=8e-28  Score=207.10  Aligned_cols=162  Identities=25%  Similarity=0.295  Sum_probs=133.3

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCccc--ccccchhhccCCcEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQER--YHTLAPMYYRNAQAAI  118 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~--~~~l~~~~~~~ad~ii  118 (373)
                      ..++++++|.   |||||+++|++..+...  ++|.++..+.+.+++..+.+.+|||+|++.  +..+...+++.+|+++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i   82 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV   82 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence            3578999997   99999999999988765  888888888899999999999999999988  6777888999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||++++.+|+.+..|+..+...                    ....++|+++|+||+|+.+. +.+..+++..++..+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~l~~~--------------------~~~~~~piilv~NK~Dl~~~-~~v~~~~~~~~~~~~  141 (175)
T 2nzj_A           83 IVYSIADRGSFESASELRIQLRRT--------------------HQADHVPIILVGNKADLARC-REVSVEEGRACAVVF  141 (175)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHC--------------------C----CCEEEEEECTTCTTT-CCSCHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh--------------------hccCCCCEEEEEEChhhccc-cccCHHHHHHHHHHc
Confidence            999999999999999999888762                    12357899999999999765 668888899999999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      +++++++||++|.||+++|++|++.+..+.
T Consensus       142 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  171 (175)
T 2nzj_A          142 DCKFIETSATLQHNVAELFEGVVRQLRLRR  171 (175)
T ss_dssp             TSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999886543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.96  E-value=1e-27  Score=208.87  Aligned_cols=163  Identities=35%  Similarity=0.596  Sum_probs=146.7

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ...++++++|.   |||||+++|++..+...   |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            45689999997   99999999999988765   8888888888999999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||++++.+|+.+..|+..+..                     ....++|++||+||+|+... +.+..+++.++++..
T Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~  145 (186)
T 2bme_A           88 LVYDITSRETYNALTNWLTDARM---------------------LASQNIVIILCGNKKDLDAD-REVTFLEASRFAQEN  145 (186)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECGGGGGG-CCSCHHHHHHHHHHT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECcccccc-cccCHHHHHHHHHHc
Confidence            99999999999999999988876                     33468899999999999654 568888999999999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      +++++++||+++.||+++|++|++.+.++..
T Consensus       146 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  176 (186)
T 2bme_A          146 ELMFLETSALTGENVEEAFVQCARKILNKIE  176 (186)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999998876544

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.96  E-value=1.5e-27  Score=209.60  Aligned_cols=165  Identities=34%  Similarity=0.540  Sum_probs=147.3

Q ss_pred             CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCc
Q psy18160         42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQ  115 (373)
Q Consensus        42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad  115 (373)
                      ......++++++|.   |||||+++|++..+...   |+|.++..+.+.+++..+.+.+|||+|++++..++..+++++|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   99 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV   99 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            33455688999997   99999999999988765   8888898889999999999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH
Q psy18160        116 AAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA  195 (373)
Q Consensus       116 ~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~  195 (373)
                      ++|+|||++++.+|+.+..|+..+..                     ....++|++||+||+|+... +.+..+++.+++
T Consensus       100 ~vi~v~D~~~~~s~~~~~~~l~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~  157 (193)
T 2oil_A          100 GALLVFDLTKHQTYAVVERWLKELYD---------------------HAEATIVVMLVGNKSDLSQA-REVPTEEARMFA  157 (193)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHT---------------------TSCTTCEEEEEEECGGGGGG-CCSCHHHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHH---------------------hcCCCCeEEEEEECCCcccc-cccCHHHHHHHH
Confidence            99999999999999999999988876                     33467899999999999764 567888999999


Q ss_pred             HHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       196 ~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      +..+++++++||+++.||+++|++|++.+.++.
T Consensus       158 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  190 (193)
T 2oil_A          158 ENNGLLFLETSALDSTNVELAFETVLKEIFAKV  190 (193)
T ss_dssp             HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999887543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.2e-27  Score=206.84  Aligned_cols=163  Identities=29%  Similarity=0.519  Sum_probs=144.7

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      ....++++++|.   |||||+++|++..+...   |++.++....+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            345689999997   99999999999988755   888888889999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160        118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE  197 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~  197 (373)
                      ++|||++++.+++.+..|+..+..                      ..+++|++||+||+|+.+. +.+..+++.+++..
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~----------------------~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~  142 (181)
T 3tw8_B           86 IVVYDVTSAESFVNVKRWLHEINQ----------------------NCDDVCRILVGNKNDDPER-KVVETEDAYKFAGQ  142 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHH----------------------HCTTSEEEEEEECTTCGGG-CCSCHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHH----------------------hCCCCCEEEEEECCCCchh-cccCHHHHHHHHHH
Confidence            999999999999999999998876                      2357899999999998765 66888899999999


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      .+++++++||++|.||+++|++|.+.+.+...
T Consensus       143 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  174 (181)
T 3tw8_B          143 MGIQLFETSAKENVNVEEMFNCITELVLRAKK  174 (181)
T ss_dssp             HTCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999998876544

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=2e-27  Score=205.65  Aligned_cols=160  Identities=34%  Similarity=0.629  Sum_probs=136.3

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      ...++++++|.   |||||+++|++..+...    |++.++....+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i   87 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   87 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence            34688999997   99999999999988542    888888888888999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160        118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE  197 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~  197 (373)
                      ++|||++++.+++.+..|+..+..                     ....++|++||+||+|+.+. +.+..+++.++++.
T Consensus        88 i~v~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~  145 (180)
T 2g6b_A           88 LLLYDVTNKASFDNIQAWLTEIHE---------------------YAQHDVALMLLGNKVDSAHE-RVVKREDGEKLAKE  145 (180)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECCSTTSC-CCSCHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHH---------------------hCCCCCcEEEEEECcccCcc-cccCHHHHHHHHHH
Confidence            999999999999999999988877                     23367899999999999765 66788899999999


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        198 NGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ++++++++||+++.||+++|++|.+.+.+
T Consensus       146 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (180)
T 2g6b_A          146 YGLPFMETSAKTGLNVDLAFTAIAKELKR  174 (180)
T ss_dssp             HTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999988864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.96  E-value=5.8e-28  Score=207.00  Aligned_cols=158  Identities=36%  Similarity=0.657  Sum_probs=135.8

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|.   |||||+++|++..+...   |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   84 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   84 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence            4578999997   99999999999988765   88888888888899999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++++.+++.+..|+..+..                     ....++|+++|+||+|+.+. +.+..+++.++++..+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~  142 (170)
T 1z08_A           85 VYDITDEDSFQKVKNWVKELRK---------------------MLGNEICLCIVGNKIDLEKE-RHVSIQEAESYAESVG  142 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH---------------------HHGGGSEEEEEEECGGGGGG-CCSCHHHHHHHHHHTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCeEEEEEECcccccc-cccCHHHHHHHHHHcC
Confidence            9999999999999999988766                     22357899999999999765 5688889999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++++++||++|.|++++|++|++.+.
T Consensus       143 ~~~~~~Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          143 AKHYHTSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             CEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             CeEEEecCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999998775

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=6.6e-28  Score=216.26  Aligned_cols=164  Identities=25%  Similarity=0.298  Sum_probs=138.3

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcC--cCc--ceeeeEEEEEEEECCEEEEEEEEeCCCccc-ccccchhhccCC
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVF--YPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQER-YHTLAPMYYRNA  114 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~--~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~-~~~l~~~~~~~a  114 (373)
                      .....++++++|.   |||||+++|++...  ...  ++|.++..+.+.+++..+.+.+|||+|++. +..+.+.+++.+
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            3345689999998   99999999996543  333  788888888999999999999999999887 566778889999


Q ss_pred             cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH
Q psy18160        115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY  194 (373)
Q Consensus       115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~  194 (373)
                      |++++|||++++.||+.+..|+..+...                    ....++|++|||||+|+.+. +.+..++++.+
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~--------------------~~~~~~piilVgNK~DL~~~-r~v~~~e~~~~  171 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRA--------------------RQTEDIPIILVGNKSDLVRC-REVSVSEGRAC  171 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTS--------------------GGGTTSCEEEEEECTTCGGG-CCSCHHHHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHH--------------------hCCCCCcEEEEEEChHHhcC-ceEeHHHHHHH
Confidence            9999999999999999999998877651                    12357899999999999764 66888888999


Q ss_pred             HHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       195 ~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +..++++|+++||++|.||+++|++|++.+..+
T Consensus       172 a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~  204 (211)
T 2g3y_A          172 AVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR  204 (211)
T ss_dssp             HHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999988543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=1.8e-27  Score=203.45  Aligned_cols=158  Identities=48%  Similarity=0.772  Sum_probs=142.0

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .++++++|.   |||||+++|+++.+...   |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence            478999997   99999999999988765   888888888899999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC--cccCHHHHHHHHHHc
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR--RCVEYSEGEAYAEEN  198 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~--~~v~~~e~~~~~~~~  198 (373)
                      ||++++.+++.+..|+..+..                     ....++|+++|+||+|+.+..  +.+..+++.++++..
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~  141 (170)
T 1ek0_A           83 YDVTKPQSFIKARHWVKELHE---------------------QASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK  141 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHH---------------------HSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH
T ss_pred             EecCChHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc
Confidence            999999999999999988876                     334689999999999986431  457788899999999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +++++++||++|.|++++|++|.+.+.
T Consensus       142 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~  168 (170)
T 1ek0_A          142 GLLFFETSAKTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999988765

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.96  E-value=2.8e-27  Score=202.49  Aligned_cols=158  Identities=44%  Similarity=0.749  Sum_probs=143.7

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|.   |||||+++|++..+...   |+|.++..+.+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   84 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   84 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence            4588999997   99999999999987665   88888888889999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++++.+++.+..|+..+..                     ...+.+|+++|+||+|+.+. +.+..+++..+++..+
T Consensus        85 v~d~~~~~s~~~~~~~~~~l~~---------------------~~~~~~~iilv~nK~Dl~~~-~~v~~~~~~~~~~~~~  142 (170)
T 1z0j_A           85 VYDITKEETFSTLKNWVRELRQ---------------------HGPPSIVVAIAGNKCDLTDV-REVMERDAKDYADSIH  142 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH---------------------HSCTTSEEEEEEECTTCGGG-CCSCHHHHHHHHHHTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHH---------------------hCCCCCcEEEEEECCccccc-cccCHHHHHHHHHHcC
Confidence            9999999999999999988877                     34578999999999999765 5678888999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++++++||+++.|++++|++|.+.+.
T Consensus       143 ~~~~~~Sa~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          143 AIFVETSAKNAININELFIEISRRIP  168 (170)
T ss_dssp             CEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             CEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence            99999999999999999999998775

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.96  E-value=6.2e-28  Score=216.49  Aligned_cols=164  Identities=23%  Similarity=0.406  Sum_probs=139.6

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      +....++++++|.   |||||+++|+++.|...   |++.++ .+.+.+++..+.+.||||+|+++|..++..+++++|+
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  101 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA  101 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence            3445689999998   99999999999998776   888776 5677788889999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHH-HHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------Cc
Q psy18160        117 AIIVYDITNQDTFGR-AKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RR  184 (373)
Q Consensus       117 iilv~D~~~~~Sf~~-i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~  184 (373)
                      +|+|||++++.+|+. +..|+..+...                      .+++|++|||||+|+.++           .+
T Consensus       102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~----------------------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  159 (214)
T 3q3j_B          102 VLLCFDISRPETVDSALKKWRTEILDY----------------------CPSTRVLLIGCKTDLRTDLSTLMELSHQKQA  159 (214)
T ss_dssp             EEEEEETTCTHHHHHHHTHHHHHHHHH----------------------CTTSEEEEEEECGGGGGCHHHHHHHHHTTCC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHh----------------------CCCCCEEEEEEChhhccchhhhhhhcccccC
Confidence            999999999999999 68899988772                      358899999999999652           25


Q ss_pred             ccCHHHHHHHHHHcCC-eEEEEcCCCCCC-HHHHHHHHHHHcchhhc
Q psy18160        185 CVEYSEGEAYAEENGL-LFMETSAKTAMN-VNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       185 ~v~~~e~~~~~~~~~~-~~~evSak~~~g-I~~lf~~L~~~i~~~~~  229 (373)
                      .+..+++.++++.+++ +|+++||++|.| |+++|+.|++.+..+..
T Consensus       160 ~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          160 PISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             ccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence            6889999999999999 999999999998 99999999998875433

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.96  E-value=2.5e-27  Score=206.01  Aligned_cols=161  Identities=22%  Similarity=0.381  Sum_probs=144.0

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      ....++++++|.   |||||+++|++..+...   |++..+ .+.+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   93 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF   93 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            445689999998   99999999999987766   777666 67888999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160        118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE  197 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~  197 (373)
                      ++|||++++.+|+.+..|+..+...                    ....++|++||+||+|+.+. +.+..++++++++.
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~p~ilv~nK~Dl~~~-~~v~~~~~~~~~~~  152 (183)
T 3kkq_A           94 LIVYSVTDKASFEHVDRFHQLILRV--------------------KDRESFPMILVANKVDLMHL-RKVTRDQGKEMATK  152 (183)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH--------------------HTSSCCCEEEEEECTTCSTT-CCSCHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCcEEEEEECCCchhc-cCcCHHHHHHHHHH
Confidence            9999999999999999999888652                    23467899999999999775 67899999999999


Q ss_pred             cCCeEEEEcCC-CCCCHHHHHHHHHHHcch
Q psy18160        198 NGLLFMETSAK-TAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       198 ~~~~~~evSak-~~~gI~~lf~~L~~~i~~  226 (373)
                      ++++++++||+ ++.||+++|++|++.+.+
T Consensus       153 ~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          153 YNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             HTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             hCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            99999999999 999999999999987753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.96  E-value=2.8e-27  Score=204.76  Aligned_cols=160  Identities=19%  Similarity=0.258  Sum_probs=135.5

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ...++++++|.   |||||+++|+++.|...  |++..+ .+.+.+++..+.+++|||+|+++     ..+++++|++++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            34689999998   99999999999988766  777554 67888999999999999999986     568899999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC-CCcccCHHHHHHHHHHc
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT-SRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~-~~~~v~~~e~~~~~~~~  198 (373)
                      |||++++.+|+.+..|+..+...                  .....+++|++|||||+|+.. ..+.+..+++.++++..
T Consensus        79 v~D~~~~~s~~~~~~~~~~i~~~------------------~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~  140 (178)
T 2iwr_A           79 VFSLEDENSFQAVSRLHGQLSSL------------------RGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM  140 (178)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH------------------HCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHH------------------HhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh
Confidence            99999999999999987766552                  112346899999999999942 22678889999999886


Q ss_pred             -CCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        199 -GLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       199 -~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                       +++++++||++|.||+++|++|++.+.+..
T Consensus       141 ~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  171 (178)
T 2iwr_A          141 KRCSYYETXATYGLNVDRVFQEVAQKVVTLR  171 (178)
T ss_dssp             SSEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence             689999999999999999999999887543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.96  E-value=1.6e-27  Score=204.02  Aligned_cols=158  Identities=39%  Similarity=0.651  Sum_probs=139.6

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .++++++|.   |||||+++|++..+...   |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   82 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence            478999997   99999999999988765   888888888888898899999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.+++.+..|+..+..                     ....++|+++|+||+|+..  +.+..+++.++++.+++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~  139 (170)
T 1g16_A           83 YDITDERTFTNIKQWFKTVNE---------------------HANDEAQLLLVGNKSDMET--RVVTADQGEALAKELGI  139 (170)
T ss_dssp             EETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCTT--CCSCHHHHHHHHHHHTC
T ss_pred             EECCCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECccCCc--CccCHHHHHHHHHHcCC
Confidence            999999999999999988877                     3346789999999999943  56788889999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +++++||++|.|++++|++|.+.+.++
T Consensus       140 ~~~~~Sa~~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          140 PFIESSAKNDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999888653

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=211.80  Aligned_cols=163  Identities=35%  Similarity=0.606  Sum_probs=139.6

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ...++++++|.   |||||+++|+++.+...   |++.++..+.+.+++..+.+.||||+|++++..++..+++++|++|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            45689999998   99999999999988765   8888888889999999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||++++.+|+.+..|+..+..                     ....++|++||+||+|+... +.+..+++.++++..
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~~  160 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDART---------------------LASPNIVVILCGNKKDLDPE-REVTFLEASRFAQEN  160 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHH---------------------HTCTTCEEEEEEECGGGGGG-CCSCHHHHHHHHHHT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECCCcccc-cccCHHHHHHHHHHc
Confidence            99999999999999999988876                     33468999999999999754 568888999999999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      +++++++||++|.||+++|++|++.+.++..
T Consensus       161 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~  191 (200)
T 2o52_A          161 ELMFLETSALTGENVEEAFLKCARTILNKID  191 (200)
T ss_dssp             TCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998876544

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.95  E-value=1.2e-27  Score=206.82  Aligned_cols=163  Identities=25%  Similarity=0.371  Sum_probs=141.6

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECC-EEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDD-VTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~-~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ..++++++|.   |||||+++|+++.+...   |+|.++..+.+.+++ ..+.+.+|||+|++++..++..+++++|+++
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   84 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVL   84 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEE
Confidence            4589999997   99999999999988755   888888888999877 6889999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||++++.+|+.+..|+..+....                  ......+|++||+||+|+.+. +.+..+++.++++.+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~------------------~~~~~~~~iilv~nK~Dl~~~-~~~~~~~~~~~~~~~  145 (178)
T 2hxs_A           85 LVYDITNYQSFENLEDWYTVVKKVS------------------EESETQPLVALVGNKIDLEHM-RTIKPEKHLRFCQEN  145 (178)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH------------------HHHTCCCEEEEEEECGGGGGG-CSSCHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh------------------cccCCCCeEEEEEEccccccc-cccCHHHHHHHHHHc
Confidence            9999999999999999998886620                  001133458999999999764 567888999999999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +++++++||++|.||+++|++|++.+.+.
T Consensus       146 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  174 (178)
T 2hxs_A          146 GFSSHFVSAKTGDSVFLCFQKVAAEILGI  174 (178)
T ss_dssp             TCEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred             CCcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999988643

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.95  E-value=2.9e-27  Score=209.41  Aligned_cols=161  Identities=30%  Similarity=0.519  Sum_probs=145.8

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|.   |||||+++|++..+...   |+|.++..+.+.+++..+.+.+|||+|++++..++..+++++|++|+
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   86 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL   86 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence            4578999997   99999999999988765   88888888889999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++++.+|+.+..|+..+..                     ....++|++||+||+|+.+. +.+..+++.++++.++
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~  144 (203)
T 1zbd_A           87 MYDITNEESFNAVQDWSTQIKT---------------------YSWDNAQVLLVGNKCDMEDE-RVVSSERGRQLADHLG  144 (203)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH---------------------HSCSSCEEEEEEECTTCTTS-CCSCHHHHHHHHHHHT
T ss_pred             EEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECcccCcc-cccCHHHHHHHHHHCC
Confidence            9999999999999999988876                     33467899999999999765 6688889999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      ++++++||++|.||+++|++|++.+.++.
T Consensus       145 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  173 (203)
T 1zbd_A          145 FEFFEASAKDNINVKQTFERLVDVICEKM  173 (203)
T ss_dssp             CEEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999887654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.8e-28  Score=215.36  Aligned_cols=163  Identities=29%  Similarity=0.510  Sum_probs=147.3

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      ....++++++|.   |||||+++|++..+...   |++.++..+.+.+++..+.+.||||+|++++..++..+++++|++
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   99 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF   99 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence            345689999998   99999999999988776   888888888998888889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160        118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE  197 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~  197 (373)
                      ++|||++++.+|+.+..|+..+..                     ....++|++||+||+|+.+. +.+..+++.++++.
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~  157 (191)
T 3dz8_A          100 ILMYDITNEESFNAVQDWATQIKT---------------------YSWDNAQVILVGNKCDMEEE-RVVPTEKGQLLAEQ  157 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCGGG-CCSCHHHHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECCCCccc-cccCHHHHHHHHHH
Confidence            999999999999999999998877                     34568999999999999765 67888999999999


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      ++++++++||++|.||+++|++|++.+.++.
T Consensus       158 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  188 (191)
T 3dz8_A          158 LGFDFFEASAKENISVRQAFERLVDAICDKM  188 (191)
T ss_dssp             HTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999887543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.95  E-value=1.6e-27  Score=204.26  Aligned_cols=159  Identities=19%  Similarity=0.222  Sum_probs=129.4

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc-cchhhccCCcEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT-LAPMYYRNAQAAII  119 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~-l~~~~~~~ad~iil  119 (373)
                      .++++++|.   |||||+++|.+..+...   +.+.++..+.+.+++..+.+.+|||+|++++.. ++..+++++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            478999997   99999999998766654   666778888899999999999999999999876 78888999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++++++|+.+..|+..+...                    ....++|+++|+||+|+.+. +.+..+++.++++.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~  140 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAG--------------------RPHHDLPVILVGNKSDLARS-REVSLEEGRHLAGTLS  140 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--------------------STTSCCCEEEEEECTTCGGG-CCSCHHHHHHHHHHTT
T ss_pred             EEECCChHHHHHHHHHHHHHHhc--------------------ccCCCCCEEEEeeCcchhhc-ccCCHHHHHHHHHHcC
Confidence            99999999999999999888762                    22357999999999999765 6788999999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ++++++||+++.|++++|++|++.+..
T Consensus       141 ~~~~~~Sa~~~~~v~~l~~~l~~~i~~  167 (169)
T 3q85_A          141 CKHIETSAALHHNTRELFEGAVRQIRL  167 (169)
T ss_dssp             CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CcEEEecCccCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999988764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.95  E-value=1.7e-27  Score=203.41  Aligned_cols=158  Identities=25%  Similarity=0.311  Sum_probs=119.6

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .++++++|.   |||||+++|.+..+...  +.+.++ .+.+.+++..+.+.+|||+|++++..++..+++.+|++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            468999997   99999999998877655  666665 567788999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++.+|+.+..|+..+...                    ....++|+++|+||+|+.+. +.+..+++.+++...+++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~  139 (166)
T 3q72_A           81 SVTDKGSFEKASELRVQLRRA--------------------RQTDDVPIILVGNKSDLVRS-REVSVDEGRACAVVFDCK  139 (166)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHC--------------------C---CCCEEEEEECTTCCSS-CCSCHHHHHHHHHHTTCE
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEeccccccc-cccCHHHHHHHHHHhCCc
Confidence            999999999999999888762                    23467899999999999876 678899999999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ++++||++|.||+++|++|++.+.+
T Consensus       140 ~~~~Sa~~~~gi~~l~~~l~~~~~~  164 (166)
T 3q72_A          140 FIETSAALHHNVQALFEGVVRQIRL  164 (166)
T ss_dssp             EEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             EEEeccCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999988764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.95  E-value=3e-27  Score=204.37  Aligned_cols=164  Identities=24%  Similarity=0.433  Sum_probs=144.3

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      +....++++++|.   |||||+++|++..+...   |++.++. +.+.+++..+.+.+|||+|++++..++..+++++|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   83 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   83 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence            3456789999997   99999999999987766   7777765 778889999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE  196 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~  196 (373)
                      +++|||++++.+|+.+..|+..+...                    ....++|++||+||+|+.+. +.+..+++.+++.
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~  142 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRV--------------------KDRDDFPVVLVGNKADLESQ-RQVPRSEASAFGA  142 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHH--------------------HTSSCCCEEEEEECGGGGGG-CCSCHHHHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECcccccc-cccCHHHHHHHHH
Confidence            99999999999999999999888541                    23467899999999999765 5688888999999


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      ..+++++++||++|.||+++|++|.+.+.+..
T Consensus       143 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  174 (181)
T 2fn4_A          143 SHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ  174 (181)
T ss_dssp             HTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             HcCCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999887544

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.95  E-value=8.2e-28  Score=213.05  Aligned_cols=167  Identities=24%  Similarity=0.350  Sum_probs=138.6

Q ss_pred             CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCC
Q psy18160         41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNA  114 (373)
Q Consensus        41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~a  114 (373)
                      +++....++++++|.   |||||+++|++..+...   |.+..+ .+.+.+++..+.+.+|||+|++++..++..+++++
T Consensus        18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   96 (201)
T 3oes_A           18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV   96 (201)
T ss_dssp             -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred             CCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence            345566799999998   99999999999998876   777666 66777788889999999999999999999999999


Q ss_pred             cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH
Q psy18160        115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY  194 (373)
Q Consensus       115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~  194 (373)
                      |++++|||++++.+|+.+..|+..+...                    ....++|++||+||+|+... +.+..+++.++
T Consensus        97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~  155 (201)
T 3oes_A           97 HGYVLVYSVTSLHSFQVIESLYQKLHEG--------------------HGKTRVPVVLVGNKADLSPE-REVQAVEGKKL  155 (201)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHC-------------------------CCCEEEEEECTTCGGG-CCSCHHHHHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECccCccc-cccCHHHHHHH
Confidence            9999999999999999999999988762                    23357899999999999765 67888999999


Q ss_pred             HHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       195 ~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      ++.++++++++||++|.||+++|++|++.+.+...
T Consensus       156 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~  190 (201)
T 3oes_A          156 AESWGATFMESSARENQLTQGIFTKVIQEIARVEN  190 (201)
T ss_dssp             HHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999998875443

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.6e-27  Score=209.58  Aligned_cols=160  Identities=44%  Similarity=0.695  Sum_probs=144.0

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ...++++++|.   |||||+++|++..+...   |+|.++..+.+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            34689999998   99999999999987654   8898888888888888999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||++++.+|+.+..|+..+..                     ....++|++||+||+|+.+. +.+..++++++++..
T Consensus       101 lV~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piiiv~NK~Dl~~~-~~v~~~~~~~~~~~~  158 (192)
T 2fg5_A          101 IVYDITKQDSFYTLKKWVKELKE---------------------HGPENIVMAIAGNKCDLSDI-REVPLKDAKEYAESI  158 (192)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHH---------------------HSCTTCEEEEEEECGGGGGG-CCSCHHHHHHHHHTT
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHH---------------------hCCCCCcEEEEEECcccccc-cccCHHHHHHHHHHc
Confidence            99999999999999999998877                     33467899999999999754 567888999999999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      +++++++||+++.||+++|++|.+.+.+
T Consensus       159 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          159 GAIVVETSAKNAINIEELFQGISRQIPP  186 (192)
T ss_dssp             TCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred             CCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence            9999999999999999999999988764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.95  E-value=2.2e-27  Score=204.93  Aligned_cols=159  Identities=35%  Similarity=0.644  Sum_probs=143.2

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|.   |||||+++|+++.+...   |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   92 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV   92 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            4589999998   99999999999988766   88888888899999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++++.+|+.+..|+..+..                     ....++|+++|+||+|+.+. +.+..+++.++++..+
T Consensus        93 v~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~  150 (179)
T 2y8e_A           93 VYDITNTNSFHQTSKWIDDVRT---------------------ERGSDVIIMLVGNKTDLSDK-RQVSTEEGERKAKELN  150 (179)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHH---------------------HHTTSSEEEEEEECGGGGGG-CCSCHHHHHHHHHHHT
T ss_pred             EEECCCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECCccccc-CcCCHHHHHHHHHHcC
Confidence            9999999999999999988876                     23357899999999999765 5678888999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ++++++||+++.|++++|++|.+.+.+
T Consensus       151 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          151 VMFIETSAKAGYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             CEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999999999987753

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.95  E-value=8.7e-28  Score=211.46  Aligned_cols=162  Identities=33%  Similarity=0.571  Sum_probs=139.9

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      +....++++++|.   |||||+++|+++.+...   |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|+
T Consensus        22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (192)
T 2il1_A           22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG  101 (192)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            3455688999997   99999999999988765   88888888899999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE  196 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~  196 (373)
                      +|+|||++++.+|+.+..|+..+..                     ....++|++||+||+|+.+. +.+..++++++++
T Consensus       102 iilV~D~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilV~NK~Dl~~~-~~v~~~~~~~~~~  159 (192)
T 2il1_A          102 IILVYDITKKETFDDLPKWMKMIDK---------------------YASEDAELLLVGNKLDCETD-REITRQQGEKFAQ  159 (192)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECGGGGGG-CCSCHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECcccccc-cccCHHHHHHHHH
Confidence            9999999999999999999888876                     34467999999999999765 5678888999998


Q ss_pred             Hc-CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        197 EN-GLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       197 ~~-~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .. +++++++||++|.||+++|++|++.+.+
T Consensus       160 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          160 QITGMRFCEASAKDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             TSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            75 7899999999999999999999988764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.95  E-value=2e-27  Score=207.77  Aligned_cols=168  Identities=26%  Similarity=0.414  Sum_probs=145.6

Q ss_pred             CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEE-EEEEEECCE---------EEEEEEEeCCCccccc
Q psy18160         41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFI-TQTVCLDDV---------TIRFEIWDTAGQERYH  104 (373)
Q Consensus        41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~-~~~i~~~~~---------~v~l~i~Dt~G~e~~~  104 (373)
                      ..+....++++++|.   |||||+++|+++.+...   |++.++. .+.+.+++.         .+.+.+|||+|++++.
T Consensus         5 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   84 (195)
T 3bc1_A            5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR   84 (195)
T ss_dssp             -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH
T ss_pred             ccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH
Confidence            344556789999997   99999999999988765   8888887 667777765         7899999999999999


Q ss_pred             ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc
Q psy18160        105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR  184 (373)
Q Consensus       105 ~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~  184 (373)
                      .++..+++++|++++|||++++.+++.+..|+..+...                    ....++|++||+||+|+.+. +
T Consensus        85 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~  143 (195)
T 3bc1_A           85 SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH--------------------AYSENPDIVLCGNKSDLEDQ-R  143 (195)
T ss_dssp             HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH--------------------SSSSSCCEEEEEECTTCGGG-C
T ss_pred             HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECcccccc-c
Confidence            99999999999999999999999999999999988762                    12267899999999999764 5


Q ss_pred             ccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        185 CVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       185 ~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      .+..+++.++++.++++++++||+++.||+++|++|.+.+.++..
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  188 (195)
T 3bc1_A          144 AVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRME  188 (195)
T ss_dssp             CSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            678889999999999999999999999999999999998876544

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=209.68  Aligned_cols=162  Identities=23%  Similarity=0.300  Sum_probs=136.2

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      .....++++++|.   |||||+++|+++.|...   |++.++ ...+.+++..+.+++|||+|+++|..+ ..+++++|+
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~   94 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA   94 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence            3446689999998   99999999999988765   888776 466788999999999999999999886 679999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE  196 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~  196 (373)
                      +++|||++++.+|+.+..|+..+....                  .....++|++||+||+|+.+. +.+..+++.++++
T Consensus        95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~------------------~~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~  155 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSSYLELLALHA------------------KETQRSIPALLLGNKLDMAQY-RQVTKAEGVALAG  155 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHH------------------HHHCCCCCEEEEEECGGGGGG-CSSCHHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHh------------------hccCCCCCEEEEEECcchhhc-CccCHHHHHHHHH
Confidence            999999999999999999998887620                  001257899999999999765 6788899999999


Q ss_pred             HcCCeEEEEcC-CCCCCHHHHHHHHHHHcc
Q psy18160        197 ENGLLFMETSA-KTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       197 ~~~~~~~evSa-k~~~gI~~lf~~L~~~i~  225 (373)
                      .++++++++|| +++.||+++|+.|++.+.
T Consensus       156 ~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          156 RFGCLFFEVSACLDFEHVQHVFHEAVREAR  185 (187)
T ss_dssp             HHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred             HcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence            99999999999 899999999999998775

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.95  E-value=1.1e-27  Score=211.86  Aligned_cols=163  Identities=29%  Similarity=0.507  Sum_probs=135.8

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      .....++++++|.   |||||+++|++..+...   |+|.++..+.+.+++..+.+.||||+|++++..++..+++++|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            3445689999998   99999999999988655   88888888889999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC-----CCcccCHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT-----SRRCVEYSEG  191 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~-----~~~~v~~~e~  191 (373)
                      +|+|||++++.+|+.+..|+..+..                     ....++|++||+||+|+.+     ..+.+..+++
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~  162 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIED---------------------AAHETVPIMLVGNKADIRDTAATEGQKCVPGHFG  162 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHH---------------------HC---CCEEEEEECGGGHHHHHHTTCCCCCHHHH
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECcccccccccccccccCHHHH
Confidence            9999999999999999999988876                     2345789999999999952     2266888899


Q ss_pred             HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .++++..+++++++||++|.||+++|++|++.+.+
T Consensus       163 ~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          163 EKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             HHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999988753

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.95  E-value=1.9e-27  Score=210.80  Aligned_cols=166  Identities=35%  Similarity=0.570  Sum_probs=142.8

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      ....++++++|.   |||||+++|++..+...   |++.++....+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            345689999997   99999999999988765   888888888888999899999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH-
Q psy18160        118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE-  196 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~-  196 (373)
                      |+|||++++.+|+.+..|+..+......                 ....++|++||+||+|+.+  +.+..+++.++++ 
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----------------~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~  145 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASP-----------------RDPENFPFVVLGNKIDLEN--RQVATKRAQAWCYS  145 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCC-----------------SSGGGSCEEEEEECTTSSC--CCSCHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhccc-----------------ccCCCCcEEEEEECCCCcc--cccCHHHHHHHHHh
Confidence            9999999999999999999887662100                 1124789999999999973  5677888888887 


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      ..+++++++||++|.||+++|++|++.+.+..
T Consensus       146 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  177 (207)
T 1vg8_A          146 KNNIPYFETSAKEAINVEQAFQTIARNALKQE  177 (207)
T ss_dssp             TTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            66789999999999999999999999887654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2.8e-27  Score=208.03  Aligned_cols=165  Identities=24%  Similarity=0.391  Sum_probs=143.4

Q ss_pred             cccCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhc
Q psy18160         38 MMSGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYY  111 (373)
Q Consensus        38 ~~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~  111 (373)
                      .|+..+....++++++|.   |||||+++|+++.+...   |++..+ .+.+.+++..+.+.+|||+|+++|..++..++
T Consensus         9 ~m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   87 (194)
T 2atx_A            9 SMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY   87 (194)
T ss_dssp             CCSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGC
T ss_pred             ccCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhc
Confidence            345555567789999998   99999999999988765   777665 56777888889999999999999999999999


Q ss_pred             cCCcEEEEEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC--------
Q psy18160        112 RNAQAAIIVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS--------  182 (373)
Q Consensus       112 ~~ad~iilv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~--------  182 (373)
                      +++|++++|||++++.+|+.+. .|+..+...                      .+++|++||+||+|+.+.        
T Consensus        88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----------------------~~~~piilv~nK~Dl~~~~~~~~~~~  145 (194)
T 2atx_A           88 PMTDVFLICFSVVNPASFQNVKEEWVPELKEY----------------------APNVPFLLIGTQIDLRDDPKTLARLN  145 (194)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH----------------------STTCCEEEEEECTTSTTCHHHHHHHT
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh----------------------CCCCCEEEEEEChhhcccccchhhcc
Confidence            9999999999999999999997 798888761                      247899999999999763        


Q ss_pred             ---CcccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        183 ---RRCVEYSEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       183 ---~~~v~~~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                         .+.+..+++.++++.+++ +++++||++|.||+++|++|++.+.
T Consensus       146 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          146 DMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             TTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence               146788999999999998 8999999999999999999998765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.95  E-value=4.3e-27  Score=205.96  Aligned_cols=161  Identities=14%  Similarity=0.239  Sum_probs=137.3

Q ss_pred             CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      .+....++++++|.   |||||+++|+++.|...  +.+.++ .+.+.+++..+.+++|||+|+++|.     +++++|+
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~   88 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA   88 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence            44556799999998   99999999999998876  224344 5888999999999999999999876     7889999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC-CCcccCHHHHHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT-SRRCVEYSEGEAYA  195 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~-~~~~v~~~e~~~~~  195 (373)
                      +++|||++++.+|+.+..|+..+...                    ....++|++|||||+|+.. ..+.++.+++.+++
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~  148 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYNYFLRLCSF--------------------RNASEVPMVLVGTQDAISAANPRVIDDSRARKLS  148 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTT--------------------SCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECcccccccccccCHHHHHHHH
Confidence            99999999999999999999988762                    1225789999999999942 23678899999999


Q ss_pred             HHcC-CeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        196 EENG-LLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       196 ~~~~-~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      +.++ ++|+++||++|.||+++|++|++.+.+++
T Consensus       149 ~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          149 TDLKRCTYYETCATYGLNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             HHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             HHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence            9997 89999999999999999999999887543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.95  E-value=5.1e-27  Score=206.46  Aligned_cols=161  Identities=20%  Similarity=0.386  Sum_probs=141.4

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      ....++++++|.   |||||+++|+++.+...   |++.++. ..+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   98 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV   98 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence            445689999997   99999999999988655   7777764 5678899999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-CcccCHHHHHHHH
Q psy18160        118 IIVYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-RRCVEYSEGEAYA  195 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-~~~v~~~e~~~~~  195 (373)
                      ++|||++++.+|+.+ ..|+..+..                      ..+++|++||+||+|+.+. .+.+..+++.+++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~----------------------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~  156 (194)
T 3reg_A           99 LLCFAVNNRTSFDNISTKWEPEIKH----------------------YIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC  156 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHH----------------------HCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHH----------------------hCCCCCEEEEEEChhhccCCCCcccHHHHHHHH
Confidence            999999999999997 678887766                      2357899999999999753 3568889999999


Q ss_pred             HHcCCe-EEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        196 EENGLL-FMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       196 ~~~~~~-~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +.++++ ++++||++|.||+++|++|++.+.++
T Consensus       157 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  189 (194)
T 3reg_A          157 QKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN  189 (194)
T ss_dssp             HHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred             HhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence            999998 99999999999999999999988754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2.4e-27  Score=208.79  Aligned_cols=164  Identities=23%  Similarity=0.328  Sum_probs=140.6

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      ....++++++|.   |||||+++|+++.+...   |++..+ ...+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            345689999997   99999999999988755   666554 45677888999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160        118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE  197 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~  197 (373)
                      ++|||++++.+|+.+..|+..+....                   ....++|++||+||+|+.+  +.+..+++.++++.
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~  142 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIK-------------------GSVEDIPVMLVGNKCDETQ--REVDTREAQAVAQE  142 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHH-------------------SCGGGSCEEEEEECTTCSS--CSSCHHHHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHh-------------------cCCCCCCEEEEEECccCCc--cccCHHHHHHHHHH
Confidence            99999999999999998887776520                   1124789999999999975  55778889999999


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      ++++++++||++|.||+++|++|++.+.++..
T Consensus       143 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  174 (199)
T 2gf0_A          143 WKCAFMETSAKMNYNVKELFQELLTLETRRNM  174 (199)
T ss_dssp             HTCEEEECBTTTTBSHHHHHHHHHHHCSSSCE
T ss_pred             hCCeEEEEecCCCCCHHHHHHHHHHHHhhhhc
Confidence            99999999999999999999999998876544

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.95  E-value=2.4e-27  Score=202.48  Aligned_cols=158  Identities=29%  Similarity=0.504  Sum_probs=142.8

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|.   |||||+++|+++.+...   |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   83 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL   83 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence            4588999997   99999999999988765   88888988999999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++++.+++.+..|+..+...                     . .+.|+++|+||+|+.+. +.+..+++.++++.++
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~---------------------~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~  140 (168)
T 1z2a_A           84 VFSTTDRESFEAISSWREKVVAE---------------------V-GDIPTALVQNKIDLLDD-SCIKNEEAEGLAKRLK  140 (168)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH---------------------H-CSCCEEEEEECGGGGGG-CSSCHHHHHHHHHHHT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh---------------------C-CCCCEEEEEECcccCcc-cccCHHHHHHHHHHcC
Confidence            99999999999999999888762                     1 57899999999999764 5678888999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ++++++||+++.|++++|++|.+.+.+
T Consensus       141 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          141 LRFYRTSVKEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             CEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             CeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999999999987753

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.95  E-value=1.5e-27  Score=212.79  Aligned_cols=161  Identities=27%  Similarity=0.505  Sum_probs=137.5

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ...++++++|.   |||||+++|+++.|...   |++..+ ...+.+++..+.+.+|||+|+++|..++..+++++|+++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            45689999998   99999999999988765   777665 466778888999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc-------ccCHHH
Q psy18160        119 IVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR-------CVEYSE  190 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~-------~v~~~e  190 (373)
                      +|||++++.+|+.+. .|+..+...                      .+++|++||+||+|+.+...       .+..++
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~----------------------~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~  143 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRF----------------------APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQ  143 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH----------------------CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh----------------------CCCCCEEEEEeCHHhhhCccccccccCCCCHHH
Confidence            999999999999997 798888762                      24789999999999966411       247888


Q ss_pred             HHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        191 GEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       191 ~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      +.++++.++. +|+++||++|.||+++|++|++.+.+..
T Consensus       144 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          144 GEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             HHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence            9999999996 9999999999999999999999887543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.95  E-value=3.3e-27  Score=206.79  Aligned_cols=161  Identities=32%  Similarity=0.533  Sum_probs=140.7

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCccccc-ccchhhccCCcE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH-TLAPMYYRNAQA  116 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~-~l~~~~~~~ad~  116 (373)
                      ....++++++|.   |||||+++|+++.+...   |++.++..+.+.+++..+.+.+|||+|++++. .++..+++++|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            345689999997   99999999999988765   88888988999999999999999999999998 889999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE  196 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~  196 (373)
                      +++|||++++.+|+.+..|+..+...                    ....++|++||+||+|+.+. +.+..+++.++++
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~  155 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQH--------------------LLANDIPRILVGNKCDLRSA-IQVPTDLAQKFAD  155 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH--------------------CCCSCCCEEEEEECTTCGGG-CCSCHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECcccccc-ceeCHHHHHHHHH
Confidence            99999999999999999999988772                    22467899999999999765 5678889999999


Q ss_pred             HcCCeEEEEcCCCC---CCHHHHHHHHHHHcc
Q psy18160        197 ENGLLFMETSAKTA---MNVNEIFVEIAKKLP  225 (373)
Q Consensus       197 ~~~~~~~evSak~~---~gI~~lf~~L~~~i~  225 (373)
                      .++++++++||+++   .||+++|++|++.+.
T Consensus       156 ~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          156 THSMPLFETSAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             HTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred             HcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence            99999999999999   999999999987764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.2e-26  Score=203.32  Aligned_cols=161  Identities=35%  Similarity=0.585  Sum_probs=144.3

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ...++++++|.   |||||+++|++..+...   |++.++..+.+.+++..+.+.||||+|++++..++..+++++|+++
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            34589999997   99999999999988765   8888888889999999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||++++.+++.+..|+..+...                    ....++|++||+||+|+.+  +.+..+++.++++.+
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~  150 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELETY--------------------CTRNDIVNMLVGNKIDKEN--REVDRNEGLKFARKH  150 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTC--------------------CSCSCCEEEEEEECTTSSS--CCSCHHHHHHHHHHT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh--------------------cCcCCCcEEEEEECCcCcc--cccCHHHHHHHHHHc
Confidence            999999999999999999888662                    1235789999999999954  567888899999999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +++++++||+++.||+++|++|++.+.+.
T Consensus       151 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (195)
T 1x3s_A          151 SMLFIEASAKTCDGVQCAFEELVEKIIQT  179 (195)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             CCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999988754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.95  E-value=7.5e-27  Score=201.53  Aligned_cols=164  Identities=26%  Similarity=0.480  Sum_probs=142.7

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      ....++++++|.   |||||+++|++..+...   |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            345688999998   99999999999988765   888888888999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH-
Q psy18160        118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE-  196 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~-  196 (373)
                      ++|||++++.+++.+..|+..+.....                 .....++|+++|+||+|+.+  +.+..+++.++++ 
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------------~~~~~~~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~  144 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYAD-----------------VKEPESFPFVILGNKIDISE--RQVSTEEAQAWCRD  144 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHT-----------------CSCTTTSCEEEEEECTTCSS--CSSCHHHHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHcc-----------------ccccCCCcEEEEEECCcccc--cccCHHHHHHHHHh
Confidence            999999999999999999988876211                 01236789999999999973  5688889999988 


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ..+++++++||++|.||+++|++|++.+.+
T Consensus       145 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          145 NGDYPYFETSAKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             TTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             cCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            567899999999999999999999998864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.95  E-value=7.2e-27  Score=203.59  Aligned_cols=161  Identities=26%  Similarity=0.438  Sum_probs=139.0

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|.   |||||+++|++..+...   |.+ +.....+.+++..+.+.+|||+|++++..++..+++.+|++++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            4578999998   99999999999987765   554 4445778889999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++++.+|+.+..|+..+...                    ....++|+++|+||+|+.+  +.+..+++.++++.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~~~  139 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRV--------------------KDSEDVPMVLVGNKCDLPS--RTVDTKQAQDLARSYG  139 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH--------------------TTCSCCCEEEEEECTTSSS--CSSCHHHHHHHHHHHT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCcEEEEEECccCcc--cccCHHHHHHHHHHcC
Confidence            99999999999999999888763                    2346789999999999975  5678889999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      ++++++||++|.||+++|++|++.+.+...
T Consensus       140 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  169 (189)
T 4dsu_A          140 IPFIETSAKTRQGVDDAFYTLVREIRKHKE  169 (189)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999998876543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.95  E-value=5.5e-27  Score=204.67  Aligned_cols=160  Identities=26%  Similarity=0.443  Sum_probs=137.9

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      +...++++++|.   |||||+++|++..+...   |++.++ .+.+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            345689999998   99999999999988765   777666 46678888899999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------Ccc
Q psy18160        118 IIVYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRC  185 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~  185 (373)
                      ++|||++++.+|+.+ ..|+..+...                      .+++|++||+||+|+.+.           .+.
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~----------------------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  140 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEF----------------------CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTP  140 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH----------------------CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHH----------------------CCCCCEEEEEEcchhhcchhhHhhhhhcccCC
Confidence            999999999999998 6888887661                      257899999999999642           256


Q ss_pred             cCHHHHHHHHHHcC-CeEEEEcCC-CCCCHHHHHHHHHHHcch
Q psy18160        186 VEYSEGEAYAEENG-LLFMETSAK-TAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       186 v~~~e~~~~~~~~~-~~~~evSak-~~~gI~~lf~~L~~~i~~  226 (373)
                      ++.+++.++++.++ .+|+++||+ ++.||+++|+.|++.+.+
T Consensus       141 v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          141 VSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             CCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence            88899999999988 799999999 689999999999987753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.95  E-value=3.7e-27  Score=203.96  Aligned_cols=167  Identities=31%  Similarity=0.513  Sum_probs=131.6

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC-CEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~-~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      ....++++++|.   |||||+++|++..+...   |++.++....+.++ +..+.+.+|||+|++++..++..+++++|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            345689999997   99999999999988765   78888888888887 667889999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE  196 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~  196 (373)
                      +++|||++++.+|+.+..|+..+.....                 .....++|++||+||+|+....+.+..+++.++++
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------------~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~  147 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHAN-----------------VNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK  147 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHC-----------------CSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhc-----------------ccCcCCCcEEEEEECCccccccccCCHHHHHHHHH
Confidence            9999999999999999999988876211                 01236789999999999965546678888999988


Q ss_pred             -HcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        197 -ENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       197 -~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                       ..+.+++++||++|.||+++|++|++.+.++
T Consensus       148 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          148 SLGDIPLFLTSAKNAINVDTAFEEIARSALQQ  179 (182)
T ss_dssp             HTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             hcCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence             4568999999999999999999999988654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.95  E-value=9.3e-27  Score=198.64  Aligned_cols=157  Identities=28%  Similarity=0.457  Sum_probs=138.1

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .++++++|.   |||||+++|.++.+...   |++..+ .+.+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            478999997   99999999999988765   777665 46677888899999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc-C
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN-G  199 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~-~  199 (373)
                      ||++++.+|+.+..|+..+...                    ....++|+++|+||+|+.+. +.+..+++.++++.+ +
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~  140 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRV--------------------KDTEDVPMILVGNKCDLEDE-RVVGKEQGQNLARQWCN  140 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH--------------------HCCSCCCEEEEEECTTCGGG-CCSCHHHHHHHHHHTTS
T ss_pred             EECCCHHHHHHHHHHHHHHHHh--------------------hCcCCCcEEEEEECcccccc-ccCCHHHHHHHHHHccC
Confidence            9999999999999998888762                    23467899999999999765 667888999999987 7


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++++++||++|.|++++|++|++.+.
T Consensus       141 ~~~~~~Sa~~~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          141 CAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             CEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             CcEEEecCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999988764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.95  E-value=2.9e-26  Score=201.73  Aligned_cols=159  Identities=39%  Similarity=0.665  Sum_probs=139.8

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEE----------------------------
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVT----------------------------   89 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~----------------------------   89 (373)
                      ....++++++|.   |||||+++|++..+...   |++.++..+.+.+++..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            345689999997   99999999999988765   88888888888887765                            


Q ss_pred             ---------EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhh
Q psy18160         90 ---------IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKEL  160 (373)
Q Consensus        90 ---------v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~  160 (373)
                               +.+.||||+|++++..++..+++.+|++++|||++++.+++.+..|+..+...                  
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~------------------  145 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS------------------  145 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH------------------
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh------------------
Confidence                     89999999999999999999999999999999999999999999999888762                  


Q ss_pred             hhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        161 QRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       161 ~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                           .+.|+++|+||+| ... +.+..+++.++++..+++++++||+++.||+++|++|++.+.++
T Consensus       146 -----~~~piilv~NK~D-~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          146 -----SNYIIILVANKID-KNK-FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             -----SCCEEEEEEECTT-CC--CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             -----CCCcEEEEEECCC-ccc-ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence                 2389999999999 333 66888999999999999999999999999999999999887643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=1.7e-26  Score=205.66  Aligned_cols=164  Identities=37%  Similarity=0.610  Sum_probs=144.1

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      +....++++++|.   |||||+++|++..+...   |++.++....+.+++..+.+.+|||+|++++..++..+++.+|+
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG   95 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            3345689999997   99999999999988655   88888888899999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE  196 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~  196 (373)
                      +++|||++++.+|+.+..|+..+..                     ....++|++||+||+|+..  +.+..+++.++++
T Consensus        96 ii~v~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~  152 (213)
T 3cph_A           96 IILVYDVTDERTFTNIKQWFKTVNE---------------------HANDEAQLLLVGNKSDMET--RVVTADQGEALAK  152 (213)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHH---------------------HTTTCSEEEEEEECTTCSS--CCSCHHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECCCCcc--cccCHHHHHHHHH
Confidence            9999999999999999999988876                     2345789999999999943  5678888999999


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      .++++++++||+++.||+++|++|.+.+.++..
T Consensus       153 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  185 (213)
T 3cph_A          153 ELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID  185 (213)
T ss_dssp             HHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999998876543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1e-26  Score=205.03  Aligned_cols=164  Identities=29%  Similarity=0.390  Sum_probs=140.6

Q ss_pred             CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCC
Q psy18160         41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNA  114 (373)
Q Consensus        41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~a  114 (373)
                      .+.....++++++|.   |||||+++|+++.+...   |++.++ .+.+.+++..+.+.+|||+|+++ ..++..+++.+
T Consensus        22 ~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~   99 (196)
T 2atv_A           22 SMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWG   99 (196)
T ss_dssp             -----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHC
T ss_pred             ccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccC
Confidence            334456789999998   99999999999988765   777655 56678899999999999999998 77889999999


Q ss_pred             cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH
Q psy18160        115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY  194 (373)
Q Consensus       115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~  194 (373)
                      |++++|||++++.+|+.+..|+..+...                    ....++|++||+||+|+.+. +.+..+++.++
T Consensus       100 d~iilv~D~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~NK~Dl~~~-~~v~~~~~~~~  158 (196)
T 2atv_A          100 EGFVLVYDITDRGSFEEVLPLKNILDEI--------------------KKPKNVTLILVGNKADLDHS-RQVSTEEGEKL  158 (196)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHH--------------------HTTSCCCEEEEEECGGGGGG-CCSCHHHHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHh--------------------hCCCCCcEEEEEECcccccc-cccCHHHHHHH
Confidence            9999999999999999999999888762                    22357899999999999765 66888999999


Q ss_pred             HHHcCCeEEEEcCCCCC-CHHHHHHHHHHHcchh
Q psy18160        195 AEENGLLFMETSAKTAM-NVNEIFVEIAKKLPKK  227 (373)
Q Consensus       195 ~~~~~~~~~evSak~~~-gI~~lf~~L~~~i~~~  227 (373)
                      ++.++++++++||++|. ||+++|++|++.+.++
T Consensus       159 ~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~  192 (196)
T 2atv_A          159 ATELACAFYECSACTGEGNITEIFYELCREVRRR  192 (196)
T ss_dssp             HHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence            99999999999999999 9999999999988754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.95  E-value=1.5e-26  Score=204.46  Aligned_cols=163  Identities=21%  Similarity=0.337  Sum_probs=134.7

Q ss_pred             CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCc
Q psy18160         42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQ  115 (373)
Q Consensus        42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad  115 (373)
                      ......++++++|.   |||||+++|+++.|...   |++..+ ...+.+++..+.+.+|||+|+++|..++..+++++|
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            34456789999998   99999999999887655   666555 567788999999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------C
Q psy18160        116 AAIIVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------R  183 (373)
Q Consensus       116 ~iilv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~  183 (373)
                      ++++|||++++.+|+.+. .|+..+...                      .+++|++||+||+|+...           .
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----------------------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~  151 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCH----------------------CPKAPIILVGTQSDLREDVKVLIELDKCKE  151 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH----------------------CSSSCEEEEEECGGGGGCHHHHHHHHTTTC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHh----------------------CCCCCEEEEEECHhhhhchhhhhhhccccc
Confidence            999999999999999997 798887762                      247899999999999652           2


Q ss_pred             cccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        184 RCVEYSEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       184 ~~v~~~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +.+..+++..+++.+++ +|+++||++|.||+++|++|++.+.+.
T Consensus       152 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          152 KPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             CCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence            56788899999999997 999999999999999999999988654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.95  E-value=1.6e-26  Score=203.70  Aligned_cols=160  Identities=26%  Similarity=0.323  Sum_probs=134.5

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCc--CcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCccc-ccccchhhccCCcEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVV--FYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQER-YHTLAPMYYRNAQAAI  118 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~--~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~-~~~l~~~~~~~ad~ii  118 (373)
                      .++++++|.   |||||+++|++..  |...  ++|.++..+.+.+++..+.+.+|||+|++. +..+.+.+++.+|+++
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i   85 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL   85 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEE
Confidence            578999998   9999999999643  3333  778888888899999999999999999876 5667888999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||++++.||+.+..|+..+...                    ....++|+++|+||+|+... +.+..+++..++..+
T Consensus        86 ~v~dv~~~~s~~~~~~~~~~l~~~--------------------~~~~~~piilV~NK~Dl~~~-r~v~~~~~~~~a~~~  144 (192)
T 2cjw_A           86 IVYSITDRASFEKASELRIQLRRA--------------------RQTEDIPIILVGNKSDLVRX-REVSVSEGRAXAVVF  144 (192)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH--------------------TTTSCCCEEEEEECTTCGGG-CCSCHHHHHHHHHHT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh--------------------hCCCCCeEEEEEechhhhcc-ccccHHHHHHHHHHh
Confidence            999999999999999998877652                    12357899999999999754 668888888899999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +++|+++||++|.||+++|++|++.+...
T Consensus       145 ~~~~~e~SA~~g~~v~~lf~~l~~~~~~~  173 (192)
T 2cjw_A          145 DXKFIETSAAVQHNVKELFEGIVRQVRLR  173 (192)
T ss_dssp             TCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCceEEeccccCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999988543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.95  E-value=1.6e-26  Score=196.95  Aligned_cols=157  Identities=26%  Similarity=0.439  Sum_probs=136.0

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .++++++|.   |||||+++|++..+...   |.+..+ ...+.+++..+.+.+|||+|++++..++..+++.+|++++|
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            478999997   99999999999987665   666555 45678899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.+|+.+..|+..+...                    ....++|+++|+||+|+.+. +.+..+++.++++.+++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~  141 (168)
T 1u8z_A           83 FSITEMESFAATADFREQILRV--------------------KEDENVPFLLVGNKSDLEDK-RQVSVEEAKNRADQWNV  141 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHH--------------------HCCTTSCEEEEEECGGGGGG-CCSCHHHHHHHHHHHTC
T ss_pred             EECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCcEEEEEECcccccc-CccCHHHHHHHHHHcCC
Confidence            9999999999999999888762                    22357899999999999765 56888899999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +++++||+++.|++++|++|++.+.
T Consensus       142 ~~~~~Sa~~~~gi~~l~~~l~~~i~  166 (168)
T 1u8z_A          142 NYVETSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999998775

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.95  E-value=5.2e-27  Score=210.09  Aligned_cols=164  Identities=28%  Similarity=0.459  Sum_probs=143.0

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCE----------EEEEEEEeCCCcccccccch
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDV----------TIRFEIWDTAGQERYHTLAP  108 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~----------~v~l~i~Dt~G~e~~~~l~~  108 (373)
                      ...++++++|.   |||||+++|++..+...   |++.++..+.+.+++.          .+.+.||||+|+++|..++.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            44688999997   99999999999988765   8888888888888776          78999999999999999999


Q ss_pred             hhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160        109 MYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY  188 (373)
Q Consensus       109 ~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~  188 (373)
                      .+++.+|++|+|||++++.+|+.+..|+..+...                    ....++|++||+||+|+.+. +.+..
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~--------------------~~~~~~piilV~NK~Dl~~~-~~v~~  161 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN--------------------AYCENPDIVLIGNKADLPDQ-REVNE  161 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCC--------------------CTTTCCEEEEEEECTTCGGG-CCSCH
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh--------------------cCcCCCCEEEEEECCccccc-cccCH
Confidence            9999999999999999999999999998766541                    11267999999999999765 56788


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       189 ~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      +++.++++.++++++++||+++.||+++|++|++.+.++..
T Consensus       162 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  202 (217)
T 2f7s_A          162 RQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME  202 (217)
T ss_dssp             HHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            89999999999999999999999999999999998876543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.94  E-value=1.2e-26  Score=206.91  Aligned_cols=160  Identities=26%  Similarity=0.443  Sum_probs=138.2

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      ....++++++|.   |||||+++|++..+...   |++.++ .+.+.+++..+.+.||||+|+++|..++..+++++|++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  103 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV  103 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence            345689999998   99999999999988765   777766 46677888899999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------Ccc
Q psy18160        118 IIVYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRC  185 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~  185 (373)
                      |+|||++++.+|+.+ ..|+..+...                      .+++|++|||||+|+.+.           .+.
T Consensus       104 ilv~D~~~~~s~~~~~~~~~~~i~~~----------------------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  161 (205)
T 1gwn_A          104 LICFDISRPETLDSVLKKWKGEIQEF----------------------CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTP  161 (205)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH----------------------CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHH----------------------CCCCCEEEEEechhhccchhhhhhhcccccCC
Confidence            999999999999999 6898887661                      257899999999999642           256


Q ss_pred             cCHHHHHHHHHHcC-CeEEEEcCC-CCCCHHHHHHHHHHHcch
Q psy18160        186 VEYSEGEAYAEENG-LLFMETSAK-TAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       186 v~~~e~~~~~~~~~-~~~~evSak-~~~gI~~lf~~L~~~i~~  226 (373)
                      ++.+++.++++.++ .+|+++||+ ++.||+++|+.|++.+.+
T Consensus       162 v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          162 VSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            88889999999988 699999999 689999999999987753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.94  E-value=2.9e-26  Score=199.23  Aligned_cols=162  Identities=26%  Similarity=0.430  Sum_probs=141.5

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ...++++++|.   |||||+++|++..+...   |.+..+ ...+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   94 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence            35689999997   99999999999988665   666555 466788999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||++++.+|+.+..|+..+...                    ....++|++||+||+|+.+. +.+..+++.++++.+
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~  153 (187)
T 2a9k_A           95 CVFSITEMESFAATADFREQILRV--------------------KEDENVPFLLVGNKSDLEDK-RQVSVEEAKNRAEQW  153 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH--------------------HCCTTCCEEEEEECGGGGGG-CCSCHHHHHHHHHHT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECcccccc-CccCHHHHHHHHHHc
Confidence            999999999999999999888762                    22357899999999999765 568888999999999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      +++++++||+++.||+++|++|.+.+.+++
T Consensus       154 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  183 (187)
T 2a9k_A          154 NVNYVETSAKTRANVDKVFFDLMREIRARK  183 (187)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999886543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.94  E-value=2.2e-26  Score=195.90  Aligned_cols=157  Identities=32%  Similarity=0.468  Sum_probs=138.4

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .++++++|.   |||||+++|+++.+...   |++..+ .+.+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            478999998   99999999999988765   655443 67788899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.+++.+..|+..+...                    ....+.|+++|+||+|+.+. +.+..+++.++++.+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~  140 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRV--------------------KRYEKVPVILVGNKVDLESE-REVSSSEGRALAEEWGC  140 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHH--------------------TTTSCCCEEEEEECGGGGGG-CCSCHHHHHHHHHHHTS
T ss_pred             EeCCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECCccccc-ccCCHHHHHHHHHHhCC
Confidence            9999999999999998888762                    22357899999999998654 56788889999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +++++||++|.|++++|++|++.+.
T Consensus       141 ~~~~~Sa~~~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          141 PFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             CEEEecCCCCcCHHHHHHHHHHHHh
Confidence            9999999999999999999988764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.94  E-value=3.7e-27  Score=206.74  Aligned_cols=163  Identities=15%  Similarity=0.195  Sum_probs=134.6

Q ss_pred             CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--------------ceeeeEEEEEE-EECCEEEEEEEEeCCCccc
Q psy18160         41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY--------------LFSAAFITQTV-CLDDVTIRFEIWDTAGQER  102 (373)
Q Consensus        41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--------------Tig~~~~~~~i-~~~~~~v~l~i~Dt~G~e~  102 (373)
                      .......++++++|.   |||||++.+.+. +...              |++.++..+.+ .+++..+.+++|||+|+++
T Consensus         8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   86 (198)
T 3t1o_A            8 FANREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF   86 (198)
T ss_dssp             TTTTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred             hhccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence            344556789999997   999999665543 3322              66666665555 6678889999999999999


Q ss_pred             ccccchhhccCCcEEEEEEECC------CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeC
Q psy18160        103 YHTLAPMYYRNAQAAIIVYDIT------NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNK  176 (373)
Q Consensus       103 ~~~l~~~~~~~ad~iilv~D~~------~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK  176 (373)
                      |..++..+++++|++|+|||++      +.++|+.+.+|+..+..                      ...++|++||+||
T Consensus        87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~----------------------~~~~~piilv~NK  144 (198)
T 3t1o_A           87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL----------------------TLDDVPIVIQVNK  144 (198)
T ss_dssp             CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC----------------------CTTSSCEEEEEEC
T ss_pred             HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc----------------------ccCCCCEEEEEEc
Confidence            9999999999999999999999      55677777777766532                      4478999999999


Q ss_pred             CCCCCCCcccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        177 ADLPTSRRCVEYSEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       177 ~Dl~~~~~~v~~~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      +|+.+.   +..+++.++++.+++ +++++||++|.||+++|++|++.+.++..
T Consensus       145 ~Dl~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          145 RDLPDA---LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             TTSTTC---CCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             hhcccc---cCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            999764   788899999999999 99999999999999999999998876543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.94  E-value=5.5e-27  Score=207.69  Aligned_cols=161  Identities=21%  Similarity=0.378  Sum_probs=111.3

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhC--cCcCc---ceeeeEEEEEEEECCE--EEEEEEEeCCCcccccccchhhccCC
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINV--VFYPY---LFSAAFITQTVCLDDV--TIRFEIWDTAGQERYHTLAPMYYRNA  114 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~--~~~~~---Tig~~~~~~~i~~~~~--~v~l~i~Dt~G~e~~~~l~~~~~~~a  114 (373)
                      ...++++++|.   |||||+++|++.  .+...   |++.++..+.+.+++.  .+.+.+|||+|++++..++..+++++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            34589999997   999999999998  77654   8888888888888887  89999999999999999999999999


Q ss_pred             cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCC---CCCeEEEEEeCCCCCC-CCcccCHHH
Q psy18160        115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP---PNIVIALAGNKADLPT-SRRCVEYSE  190 (373)
Q Consensus       115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~piilVgnK~Dl~~-~~~~v~~~e  190 (373)
                      |++++|||++++.+|+.+..|+..+...                     ..   .++|++||+||+|+.+ . +.+..++
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~---------------------~~~~~~~~piilv~nK~Dl~~~~-~~v~~~~  155 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSA---------------------RPDRERPLRAVLVANKTDLPPQR-HQVRLDM  155 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHH---------------------CSCTTSCCEEEEEEECC--------CCCHHH
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHh---------------------hcccccCCcEEEEEECcccchhh-ccCCHHH
Confidence            9999999999999999999999988772                     22   5889999999999976 4 6788899


Q ss_pred             HHHHHHHcCCeEEEEcCCC-CCCHHHHHHHHHHHcchh
Q psy18160        191 GEAYAEENGLLFMETSAKT-AMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       191 ~~~~~~~~~~~~~evSak~-~~gI~~lf~~L~~~i~~~  227 (373)
                      +.++++.++++++++||++ +.||+++|++|++.+.+.
T Consensus       156 ~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~  193 (208)
T 2yc2_C          156 AQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRN  193 (208)
T ss_dssp             HHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence            9999999999999999999 999999999999987654

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.94  E-value=8.1e-28  Score=212.76  Aligned_cols=160  Identities=36%  Similarity=0.663  Sum_probs=134.7

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ...++++++|.   |||||+++|++..+...   |++.++..+.+.+++..+.+.||||+|++++..++..+++++|+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            45688999997   99999999999988776   8888888899999999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||++++.+|+.+..|+..+..                     ....++|++||+||+|+.+. +.+..+++.++++.+
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~p~ilv~nK~Dl~~~-~~v~~~~~~~~~~~~  168 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQWLQEIDR---------------------YASENVNKLLVGNKCDLTTK-KVVDYTTAKEFADSL  168 (199)
T ss_dssp             ECC-CCCSHHHHHHHHHHHHHHS---------------------CC-CCSEEEEC-CCSSCC---CCCCSCC-CHHHHTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHH---------------------hccCCCCEEEEEECccCCcc-ccCCHHHHHHHHHHc
Confidence            99999999999999999998876                     34468999999999999765 567777788899999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      +++++++||+++.||+++|++|++.+.+
T Consensus       169 ~~~~~~vSA~~g~gv~~l~~~l~~~l~~  196 (199)
T 3l0i_B          169 GIPFLETSAKNATNVEQSFMTMAAEIKK  196 (199)
T ss_dssp             TCCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999887754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.94  E-value=4.9e-26  Score=197.78  Aligned_cols=158  Identities=25%  Similarity=0.456  Sum_probs=137.9

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|.   |||||+++|+++.+...   |++..+ ...+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            3578999997   99999999999888765   666554 5677889999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccC
Q psy18160        120 VYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVE  187 (373)
Q Consensus       120 v~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~  187 (373)
                      |||++++.+|+.+. .|+..+...                      .+++|+++|+||+|+.+.           .+.+.
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~----------------------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~  140 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHH----------------------CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPIT  140 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH----------------------STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCC
T ss_pred             EEECCChhhHHHHHHHHHHHHHHh----------------------CCCCCEEEEeEcccccccchhhhhhcccccccCC
Confidence            99999999999997 688887761                      237899999999999653           14578


Q ss_pred             HHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        188 YSEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       188 ~~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .+++.++++.++. +++++||++|.||+++|++|++.+.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          141 YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence            8889999999997 99999999999999999999998863

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.94  E-value=3.4e-26  Score=204.94  Aligned_cols=161  Identities=23%  Similarity=0.444  Sum_probs=120.6

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      ....++++++|.   |||||+++|+++.+...   |++..+ .+.+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  109 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL  109 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence            345689999998   99999999999887655   665554 56778899999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------cc
Q psy18160        118 IIVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RC  185 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------~~  185 (373)
                      ++|||++++.+|+.+. .|+..+...                      .+++|++||+||+|+....           +.
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~~~~~~----------------------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  167 (214)
T 2j1l_A          110 LLCFDVTSPNSFDNIFNRWYPEVNHF----------------------CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEP  167 (214)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH----------------------CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHh----------------------CCCCCEEEEEEChhhhccchhhhhhcccccCc
Confidence            9999999999999997 788887661                      2578999999999997642           35


Q ss_pred             cCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        186 VEYSEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       186 v~~~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +..+++.++++.+++ +++++||++|.||+++|++|++.+.+.
T Consensus       168 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          168 VTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             CCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence            778889999999997 999999999999999999999988643

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.94  E-value=2.9e-25  Score=194.22  Aligned_cols=160  Identities=26%  Similarity=0.448  Sum_probs=129.5

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ...++++++|.   |||||+++|+++.+...   |.+..+ .+.+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            35689999997   99999999999987765   665544 467788999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||++++.+++.+..|+..+...                    ....++|+++|+||+|+..  +.+..+++.++++.+
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~  155 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRV--------------------KDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAKSY  155 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH--------------------HTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHH--------------------hCCCCCeEEEEEECCcCCc--ccCCHHHHHHHHHHc
Confidence            999999999999999999888762                    1235789999999999976  457788999999999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +++++++||+++.|++++|++|++.+.+.
T Consensus       156 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  184 (190)
T 3con_A          156 GIPFIETSAKTRQGVEDAFYTLVREIRQY  184 (190)
T ss_dssp             TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=6.9e-26  Score=193.97  Aligned_cols=160  Identities=26%  Similarity=0.319  Sum_probs=136.5

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      +.++++++|.   |||||+++|+++.+...   |++..+ ...+..++..+.+.+|||+|++++..++..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            3578999998   99999999999887654   666555 4566778888999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++++.+++.+..|+..+....                   ...+++|+++|+||+|+.+. +.+..+++..+++..+
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~-------------------~~~~~~pii~v~nK~Dl~~~-~~v~~~~~~~~~~~~~  140 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIK-------------------GDVESIPIMLVGNKCDESPS-REVQSSEAEALARTWK  140 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHH-------------------C---CCCEEEEEECGGGGGG-CCSCHHHHHHHHHHHT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHh-------------------CCCCCCCEEEEEEccccccc-cccCHHHHHHHHHHhC
Confidence            999999999999999888776621                   12257899999999999765 5677888899999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ++++++||++|.|++++|++|.+.+.+
T Consensus       141 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~  167 (172)
T 2erx_A          141 CAFMETSAKLNHNVKELFQELLNLEKR  167 (172)
T ss_dssp             CEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred             CeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            999999999999999999999987753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.94  E-value=1.8e-25  Score=198.02  Aligned_cols=157  Identities=26%  Similarity=0.444  Sum_probs=136.8

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|.   |||||+++|.++.+...   |++.++. ..+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence            4589999998   99999999999988765   7776664 457889999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------cccC
Q psy18160        120 VYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RCVE  187 (373)
Q Consensus       120 v~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------~~v~  187 (373)
                      |||++++.+|+.+ ..|+..+...                      .+++|++||+||+|+.+..           +.+.
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~----------------------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~  160 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKHF----------------------CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVR  160 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH----------------------STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh----------------------CCCCCEEEEEecHHhhcCccchhhhcccccCcCC
Confidence            9999999999999 5788777661                      2478999999999997641           3477


Q ss_pred             HHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        188 YSEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       188 ~~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      .+++.++++..+. +++++||++|.||+++|++|++.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          161 SEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            8889999999998 8999999999999999999988764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.94  E-value=1.4e-26  Score=200.73  Aligned_cols=157  Identities=25%  Similarity=0.485  Sum_probs=123.3

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|.   |||||+++|.++.+...   |++..+ ...+.+++..+.+++|||+|++++..++..+++++|++++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   85 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence            4579999997   99999999999987665   666444 2345567788889999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc---------ccCHH
Q psy18160        120 VYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR---------CVEYS  189 (373)
Q Consensus       120 v~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~---------~v~~~  189 (373)
                      |||++++.+|+.+. .|+..+..                     . .+++|+++|+||+|+.+...         .+..+
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~---------------------~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~  143 (182)
T 3bwd_D           86 AFSLISKASYENVSKKWIPELKH---------------------Y-APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTV  143 (182)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHH---------------------H-CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHH---------------------h-CCCCCEEEEEechhhhcCcccccccccCCCCCHH
Confidence            99999999999997 68888776                     2 24789999999999966421         14778


Q ss_pred             HHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        190 EGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       190 e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++.++++.++. +++++||++|.||+++|++|++.+.
T Consensus       144 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          144 QGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             HHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            89999999996 9999999999999999999998765

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.94  E-value=5e-25  Score=187.03  Aligned_cols=156  Identities=26%  Similarity=0.445  Sum_probs=136.8

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .++++++|.   |||||++++.+..+...   |.+..+ .+.+.+++..+.+.+|||+|++++..++..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            368999997   99999999999987765   655444 56778899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.+++.+..|+..+...                    ....++|+++|+||+|+.+  +.+..+++.++++.+++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~--------------------~~~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~  139 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRV--------------------KDSDDVPMVLVGNKSDLAA--RTVESRQAQDLARSYGI  139 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHH--------------------HTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTC
T ss_pred             EECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCcEEEEEEchhhhh--cccCHHHHHHHHHHcCC
Confidence            9999999999999999888762                    2234789999999999976  45778889999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +++++||+++.|++++|++|++.+.
T Consensus       140 ~~~~~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          140 PYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             CEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             eEEEecCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999998775

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.94  E-value=2.7e-26  Score=206.25  Aligned_cols=164  Identities=26%  Similarity=0.422  Sum_probs=143.2

Q ss_pred             ccCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhcc
Q psy18160         39 MSGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYR  112 (373)
Q Consensus        39 ~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~  112 (373)
                      +........++++++|.   |||||+++|+.+.+...   |+|.++....+.+++..+.+.+|||+|++++..++..+++
T Consensus         7 ~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   86 (221)
T 3gj0_A            7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI   86 (221)
T ss_dssp             CSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred             ccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHh
Confidence            34445566799999998   99999999888877655   8888888888999999999999999999999999999999


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH
Q psy18160        113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE  192 (373)
Q Consensus       113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~  192 (373)
                      ++|++++|||++++.+|+.+..|+..+...                      .+++|++||+||+|+.+.  .+. .+..
T Consensus        87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----------------------~~~~p~ilv~nK~Dl~~~--~~~-~~~~  141 (221)
T 3gj0_A           87 QAQCAIIMFDVTSRVTYKNVPNWHRDLVRV----------------------CENIPIVLCGNKVDIKDR--KVK-AKSI  141 (221)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHHH----------------------STTCCEEEEEECTTSSSC--SSC-GGGC
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHh----------------------CCCCCEEEEEECCccccc--ccc-HHHH
Confidence            999999999999999999999999998772                      247899999999999764  222 2566


Q ss_pred             HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        193 AYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       193 ~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      .+++..+++++++||++|.||+++|++|++.+...
T Consensus       142 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~  176 (221)
T 3gj0_A          142 VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  176 (221)
T ss_dssp             CHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            78888999999999999999999999999988754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.94  E-value=7.2e-26  Score=202.75  Aligned_cols=164  Identities=26%  Similarity=0.330  Sum_probs=138.3

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC-CEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~-~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      ....++++++|.   |||||+++|+++.+...   |++.++....+..+ +..+.+.+|||+|++++..++..+++++|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            345689999998   99999999999888765   77777665555554 445889999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE  196 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~  196 (373)
                      +++|||++++.+++.+..|+..+..                     ....++|++||+||+|+.+. +.+..+++.++++
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~  145 (218)
T 4djt_A           88 AILFFDVTSRITCQNLARWVKEFQA---------------------VVGNEAPIVVCANKIDIKNR-QKISKKLVMEVLK  145 (218)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHH---------------------HHCSSSCEEEEEECTTCC-----CCHHHHHHHTT
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECCCCccc-cccCHHHHHHHHH
Confidence            9999999999999999999998877                     23356899999999999765 5688888989999


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      ..+++++++||++|.||+++|++|++.+.+...
T Consensus       146 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~  178 (218)
T 4djt_A          146 GKNYEYFEISAKTAHNFGLPFLHLARIFTGRPD  178 (218)
T ss_dssp             TCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred             HcCCcEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999998875543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=3e-25  Score=197.51  Aligned_cols=157  Identities=25%  Similarity=0.453  Sum_probs=134.1

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .++++++|.   |||||+++|+++.+...   |++.++. ..+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  103 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC  103 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEE
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEE
Confidence            578999998   99999999999988765   6666664 4577899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------cccCH
Q psy18160        121 YDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RCVEY  188 (373)
Q Consensus       121 ~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------~~v~~  188 (373)
                      ||++++.+|+.+ ..|+..+...                      .+++|+++|+||+|+....           +.+..
T Consensus       104 ~d~~~~~s~~~~~~~~~~~~~~~----------------------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~  161 (207)
T 2fv8_A          104 FSVDSPDSLENIPEKWVPEVKHF----------------------CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRT  161 (207)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHH----------------------STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCH
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh----------------------CCCCCEEEEEEchhhhccccchhhhhhcccCCCCH
Confidence            999999999999 5788777651                      2578999999999996531           34778


Q ss_pred             HHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        189 SEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       189 ~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      +++.++++..+. +++++||++|.||+++|++|++.+.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          162 DDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             HHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            889999999988 89999999999999999999998764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.93  E-value=1.9e-25  Score=198.62  Aligned_cols=158  Identities=25%  Similarity=0.450  Sum_probs=133.8

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      ....++++++|.   |||||+++|+++.+...   |++ +.....+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            456789999998   99999999999988765   555 44466778889999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------cc
Q psy18160        118 IIVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RC  185 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------~~  185 (373)
                      ++|||++++.+|+.+. .|+..+..                     . .+++|++||+||+|+.+..           +.
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~---------------------~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  163 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRH---------------------H-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP  163 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHH---------------------H-CSSCCEEEEEECHHHHTCHHHHHHHHHTTCCC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHH---------------------h-CCCCCEEEEEechhhccchhhhhhhhcccccc
Confidence            9999999999999997 78888776                     2 2678999999999997641           23


Q ss_pred             cCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        186 VEYSEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       186 v~~~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      +..+++.++++..+. +++++||++|.||+++|++|++.+
T Consensus       164 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          164 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            778889999999986 599999999999999999998764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.93  E-value=1.2e-26  Score=230.13  Aligned_cols=214  Identities=14%  Similarity=0.054  Sum_probs=137.6

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcc--------cccccchhhccCC
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQE--------RYHTLAPMYYRNA  114 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e--------~~~~l~~~~~~~a  114 (373)
                      .+++++|.   |||||+|+|++..+...  ++|.+.......+......+.+|||+|++        ++...+..++++|
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a   83 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA   83 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence            47888887   99999999999887654  67765544444443334568999999986        5666778889999


Q ss_pred             cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH
Q psy18160        115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY  194 (373)
Q Consensus       115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~  194 (373)
                      |++++|+|++++.++.+  .|+..+.+                       ..+.|++||+||+|+.....     ++.++
T Consensus        84 d~il~vvD~~~~~~~~d--~~~~~~l~-----------------------~~~~pvilv~NK~D~~~~~~-----~~~~~  133 (436)
T 2hjg_A           84 DVIIFMVNGREGVTAAD--EEVAKILY-----------------------RTKKPVVLAVNKLDNTEMRA-----NIYDF  133 (436)
T ss_dssp             SEEEEEEETTTCSCHHH--HHHHHHHT-----------------------TCCSCEEEEEECCCC----------CCCSS
T ss_pred             CEEEEEEeCCCCCCHHH--HHHHHHHH-----------------------HcCCCEEEEEECccCccchh-----hHHHH
Confidence            99999999998776554  23333222                       24789999999999865311     11223


Q ss_pred             HHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccceeecccCC
Q psy18160        195 AEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTMANSN  273 (373)
Q Consensus       195 ~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~  273 (373)
                      + .+++ +++++||++|.|++++++++.+.+.+....                                           
T Consensus       134 ~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~-------------------------------------------  169 (436)
T 2hjg_A          134 Y-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPET-------------------------------------------  169 (436)
T ss_dssp             G-GGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSS-------------------------------------------
T ss_pred             H-HcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccc-------------------------------------------
Confidence            3 3455 789999999999999999998877521000                                           


Q ss_pred             CCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCccc--ccccCCccccccccceeeeecceeeeCC
Q psy18160        274 NSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFH--EYQESTIGGECQSSHSISFSMPTKNRLN  351 (373)
Q Consensus       274 ~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~--~~~~~Tig~~~~~~~~~~~~~~~~~v~~  351 (373)
                                        ...+..+|++++|.++||||||+++++++.+.  ..+.+ +.        .++....+..+|
T Consensus       170 ------------------~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~g-tT--------~d~~~~~~~~~~  222 (436)
T 2hjg_A          170 ------------------KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAG-TT--------RDAVDTSFTYNQ  222 (436)
T ss_dssp             ------------------CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC------------------CCEEEEETT
T ss_pred             ------------------cccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCC-ce--------eeeeEEEEEECC
Confidence                              00112479999999999999999999988763  33433 34        344445666777


Q ss_pred             eEEEEEehhhHHH
Q psy18160        352 NNVPITFVWVIMM  364 (373)
Q Consensus       352 ~~~~l~iw~~~~~  364 (373)
                      ..  +.|||+|-+
T Consensus       223 ~~--~~l~DT~G~  233 (436)
T 2hjg_A          223 QE--FVIVDTAGM  233 (436)
T ss_dssp             EE--EEETTHHHH
T ss_pred             eE--EEEEECCCc
Confidence            65  889999864

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.93  E-value=4.7e-25  Score=195.18  Aligned_cols=151  Identities=13%  Similarity=0.146  Sum_probs=119.8

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      ..+++++|.   |||||+++|.++.+...  |++.+  ...+.+++  +.+.+|||+|+++++.++..+++++|++++||
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~  100 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLV  100 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence            468999997   99999999999887655  66665  35677777  78999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH----
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE----  197 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~----  197 (373)
                      |++++.+|+.+..|+..+...                    ....++|+++|+||+|+..   .++.+++.+++..    
T Consensus       101 D~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~  157 (198)
T 1f6b_A          101 DCADHERLLESKEELDSLMTD--------------------ETIANVPILILGNKIDRPE---AISEERLREMFGLYGQT  157 (198)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTC--------------------GGGTTSCEEEEEECTTSTT---CCCHHHHHHHHTCTTTC
T ss_pred             ECCCHHHHHHHHHHHHHHHhC--------------------cccCCCcEEEEEECCCccc---cCCHHHHHHHhCccccc
Confidence            999999999999998887651                    1235789999999999965   3677777776652    


Q ss_pred             -------------cCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        198 -------------NGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       198 -------------~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                                   .+++++++||++|.||+++|++|++.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          158 TGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             CCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             ccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence                         345799999999999999999998654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.93  E-value=1.3e-24  Score=191.15  Aligned_cols=167  Identities=14%  Similarity=0.161  Sum_probs=124.2

Q ss_pred             CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcC-c---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccC
Q psy18160         41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYP-Y---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRN  113 (373)
Q Consensus        41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~-~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~  113 (373)
                      ..+.....+++++|.   |||||+++|++..+.. .   |+|..  ...+..  ..+.+.+|||+|++++..++..++++
T Consensus        11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~   86 (199)
T 4bas_A           11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN--VETFEK--GRVAFTVFDMGGAKKFRGLWETYYDN   86 (199)
T ss_dssp             -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE--EEEEEE--TTEEEEEEEECCSGGGGGGGGGGCTT
T ss_pred             ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee--EEEEEe--CCEEEEEEECCCCHhHHHHHHHHHhc
Confidence            345667789999998   9999999999999887 3   77744  334443  45779999999999999999999999


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhc--CCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160        114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRM--APPNIVIALAGNKADLPTSRRCVEYSEG  191 (373)
Q Consensus       114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~piilVgnK~Dl~~~~~~v~~~e~  191 (373)
                      +|++|+|||++++.+|+.+..|+..+...               ..+...  ...++|++||+||+|+...   ...++.
T Consensus        87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~  148 (199)
T 4bas_A           87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKH---------------EDIRRELPGGGRVPFLFFANKMDAAGA---KTAAEL  148 (199)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTS---------------HHHHSBCTTSCBCCEEEEEECTTSTTC---CCHHHH
T ss_pred             CCEEEEEEECCcHHHHHHHHHHHHHHHhC---------------hhhhhcccccCCCCEEEEEECcCCCCC---CCHHHH
Confidence            99999999999999999999998887651               000000  1137899999999999765   222222


Q ss_pred             HH------HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        192 EA------YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       192 ~~------~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      .+      +++..+++++++||++|.||+++|++|++.+.++..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          149 VEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             HHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             HHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence            11      124467889999999999999999999998876543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.92  E-value=1.1e-24  Score=191.44  Aligned_cols=150  Identities=15%  Similarity=0.216  Sum_probs=125.7

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .++++++|.   |||||+++|.++.+...  |++..  ...+.+++  +.+.+|||+|++++..++..+++++|++++||
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   98 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV   98 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence            468999997   99999999999988766  66664  46777777  77999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH----
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE----  197 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~----  197 (373)
                      |++++.+|+.+..|+..+...                    ....++|+++|+||+|+..   .++.+++.+++..    
T Consensus        99 d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~  155 (190)
T 1m2o_B           99 DAADPERFDEARVELDALFNI--------------------AELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTT  155 (190)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTC--------------------GGGTTCCEEEEEECTTSTT---CCCHHHHHHHTTCSSCC
T ss_pred             ECCChHHHHHHHHHHHHHHcc--------------------hhhcCCCEEEEEECCCCcC---CCCHHHHHHHhCCcccc
Confidence            999999999999998887651                    1235789999999999975   3566776665432    


Q ss_pred             --------cCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        198 --------NGLLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       198 --------~~~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                              .+++++++||++|.||+++|++|++.
T Consensus       156 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          156 GSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             C---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence                    34679999999999999999999764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.92  E-value=5.9e-25  Score=188.32  Aligned_cols=154  Identities=19%  Similarity=0.232  Sum_probs=124.5

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..++++++|.   |||||+++|.++.+...  |++..  .+.+.+++  +.+.+|||+|++++..++..+++++|++++|
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   81 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFN--VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   81 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEE--EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccc--eEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence            4589999998   99999999999988766  66643  45666664  6789999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH-----HH
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA-----YA  195 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~-----~~  195 (373)
                      ||++++.+|..+..|+..+...                    ....++|+++|+||+|+.+.   ...++..+     ++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~  138 (171)
T 1upt_A           82 VDSCDRDRIGISKSELVAMLEE--------------------EELRKAILVVFANKQDMEQA---MTSSEMANSLGLPAL  138 (171)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTC--------------------GGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGC
T ss_pred             EECCCHHHHHHHHHHHHHHHhc--------------------hhhCCCEEEEEEECCCCcCC---CCHHHHHHHhCchhc
Confidence            9999999999999888777551                    12257899999999999764   22222222     22


Q ss_pred             HHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       196 ~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      +..+++++++||++|.||+++|++|++.+.+
T Consensus       139 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          139 KDRKWQIFKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             TTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             cCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence            3346689999999999999999999988764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.92  E-value=7.5e-25  Score=190.92  Aligned_cols=155  Identities=17%  Similarity=0.159  Sum_probs=123.2

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ...++++++|.   |||||+++|.+..+...  |+|.  ..+.+.+++  +.+.+|||+|++++..++..+++++|++++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            34689999997   99999999999877654  6663  345667764  678999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH----
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA----  195 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~----  195 (373)
                      |||++++.+|+.+..|+..+...                    ....++|+++|+||+|+.+.   ...++..+..    
T Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~  146 (181)
T 1fzq_A           90 VIDSADRKRFEETGQELTELLEE--------------------EKLSCVPVLIFANKQDLLTA---APASEIAEGLNLHT  146 (181)
T ss_dssp             EEETTCGGGHHHHHHHHHHHTTC--------------------GGGTTCCEEEEEECTTSTTC---CCHHHHHHHTTGGG
T ss_pred             EEECcCHHHHHHHHHHHHHHHhC--------------------hhhcCCCEEEEEECcCcccC---CCHHHHHHHhCchh
Confidence            99999999999999888776541                    12357899999999999764   2333332221    


Q ss_pred             -HHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        196 -EENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       196 -~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                       ...+++++++||++|.||+++|++|++.+.+
T Consensus       147 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          147 IRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             CCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred             ccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence             1234679999999999999999999988764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.92  E-value=2.3e-25  Score=189.72  Aligned_cols=152  Identities=18%  Similarity=0.229  Sum_probs=120.1

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      ++++++|.   |||||+++|+++.+...  |++..  ...+..+  .+.+.+|||+|++++..++..+++++|++++|||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC--EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCcee--EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            47899997   99999999999888765  66633  3445444  4679999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH-----HHH
Q psy18160        123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY-----AEE  197 (373)
Q Consensus       123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~-----~~~  197 (373)
                      ++++.+|+.+..|+..+...                    ....++|+++|+||+|+.+.   ...++..+.     ++.
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~  133 (164)
T 1r8s_A           77 SNDRERVNEAREELMRMLAE--------------------DELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRH  133 (164)
T ss_dssp             TTCGGGHHHHHHHHHHHHTC--------------------GGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSS
T ss_pred             CCCHHHHHHHHHHHHHHHhc--------------------hhhcCCeEEEEEECcCCcCC---CCHHHHHHHhCcccccC
Confidence            99999999999998877651                    12357899999999999654   222332221     122


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        198 NGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .+++++++||++|.||+++|++|++.+.+
T Consensus       134 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          134 RNWYIQATCATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             CCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             ccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence            34679999999999999999999988764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.92  E-value=3.4e-24  Score=187.72  Aligned_cols=155  Identities=19%  Similarity=0.173  Sum_probs=125.9

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCc-CcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVV-FYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA  117 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~-~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i  117 (373)
                      ...++++++|.   |||||+++|++.. +...   |++  +..+.+.+++  +.+.+|||+|++++..++..+++++|++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            45689999998   9999999999987 4443   665  4456677765  6789999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCC--CCCeEEEEEeCCCCCCCCcccCHHHHHHHH
Q psy18160        118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP--PNIVIALAGNKADLPTSRRCVEYSEGEAYA  195 (373)
Q Consensus       118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilVgnK~Dl~~~~~~v~~~e~~~~~  195 (373)
                      ++|||++++.+|+.+..|+..+...                    ...  .++|++||+||+|+...   +..+++.+++
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~  151 (190)
T 2h57_A           95 IFVIDSSDRLRMVVAKEELDTLLNH--------------------PDIKHRRIPILFFANKMDLRDA---VTSVKVSQLL  151 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHS--------------------TTTTTSCCCEEEEEECTTSTTC---CCHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhC--------------------hhhccCCCeEEEEEeCcCcccC---CCHHHHHHHh
Confidence            9999999999999999998887761                    111  57899999999999653   4556666655


Q ss_pred             H-----HcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        196 E-----ENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       196 ~-----~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .     ..+++++++||++|.||+++|++|.+.+.+
T Consensus       152 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          152 CLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             ChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            3     235789999999999999999999988753

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.92  E-value=1.9e-25  Score=197.05  Aligned_cols=160  Identities=19%  Similarity=0.252  Sum_probs=123.8

Q ss_pred             CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEE--E-CCEEEEEEEEeCCCcccccccc---hhh
Q psy18160         41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVC--L-DDVTIRFEIWDTAGQERYHTLA---PMY  110 (373)
Q Consensus        41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~--~-~~~~v~l~i~Dt~G~e~~~~l~---~~~  110 (373)
                      ..+....++++++|.   |||||++++.+. +... |++.++..+.+.  + ++..+.+++|||+|+++|..+.   ..+
T Consensus        14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             ------CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             CcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            345566789999998   999999987764 4444 666555444443  3 3567889999999999998877   899


Q ss_pred             ccCCcEEEEEEECCCH--hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC------
Q psy18160        111 YRNAQAAIIVYDITNQ--DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS------  182 (373)
Q Consensus       111 ~~~ad~iilv~D~~~~--~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~------  182 (373)
                      ++++|++|+|||++++  +++..+..|+..+..                      ..+++|++|||||+|+.+.      
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~piilv~nK~Dl~~~~~~~~~  150 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYK----------------------VNPDMNFEVFIHKVDGLSDDHKIET  150 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHH----------------------HCTTCEEEEEEECGGGSCHHHHHHH
T ss_pred             cccCCEEEEEEECCCchHHHHHHHHHHHHHHHh----------------------cCCCCcEEEEEeccccCchhhhhHH
Confidence            9999999999999997  677777777776643                      2358999999999998652      


Q ss_pred             CcccCHHHHHHHHH----HcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        183 RRCVEYSEGEAYAE----ENGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       183 ~~~v~~~e~~~~~~----~~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      .+.+..+++.++++    .++++|+++||++ .||+++|+.|++.+
T Consensus       151 ~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          151 QRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             HHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence            24566667788888    6788999999999 99999999999875

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.92  E-value=1.2e-23  Score=186.02  Aligned_cols=160  Identities=38%  Similarity=0.575  Sum_probs=142.1

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .++++++|.   |||||++++++..+...   |+|.++....+.+++..+.+.+||++|++++..++..++++++++++|
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v   84 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   84 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEE
Confidence            578999997   99999999999988755   888888888999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||+++..+|+++..|+..+..                     ....+.|+++|+||+|+.+. +.+..+++.+++...++
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~i~~v~nK~Dl~~~-~~~~~~~a~~l~~~~~~  142 (199)
T 2f9l_A           85 YDIAKHLTYENVERWLKELRD---------------------HADSNIVIMLVGNKSDLRHL-RAVPTDEARAFAEKNNL  142 (199)
T ss_dssp             EETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCGGG-CCSCHHHHHHHHHHTTC
T ss_pred             EECcCHHHHHHHHHHHHHHHH---------------------hcCCCCeEEEEEECcccccc-cCcCHHHHHHHHHHcCC
Confidence            999999999999889887765                     23357899999999999764 56778889999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      .++++||+++.|++++|+.|.+.+.+..
T Consensus       143 ~~~d~Sal~~~~i~~l~~~l~~~~~~~~  170 (199)
T 2f9l_A          143 SFIETSALDSTNVEEAFKNILTEIYRIV  170 (199)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887543

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.92  E-value=8.2e-25  Score=192.62  Aligned_cols=155  Identities=17%  Similarity=0.227  Sum_probs=119.4

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ....++++++|.   |||||+++|+++.+...  |++  +..+.+..++  +.+.+|||+|++++..++..+++++|+++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            345689999997   99999999999888755  665  4445566654  67899999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH----
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY----  194 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~----  194 (373)
                      +|||++++.+|+.+..|+..+...                    ....++|++||+||+|+.+.   ...++..+.    
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~  158 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQE--------------------DELRDAVLLVFANKQDMPNA---MPVSELTDKLGLQ  158 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTC--------------------GGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcc--------------------cccCCCeEEEEEECCCCCCC---CCHHHHHHHhCcc
Confidence            999999999999999998887651                    12357899999999999654   223332221    


Q ss_pred             -HHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        195 -AEENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       195 -~~~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                       ++..+++++++||++|.||+++|++|++.+.
T Consensus       159 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          159 HLRSRTWYVQATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             GCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred             cccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence             1223457999999999999999999998875

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=2.1e-24  Score=188.56  Aligned_cols=154  Identities=14%  Similarity=0.170  Sum_probs=122.5

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..++++++|.   |||||+++|+++.+...  |+|..  .+.+.+++  +.+.+|||+|++++..++..+++++|++++|
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   90 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   90 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            3589999998   99999999998888744  76644  34566665  7789999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH----
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE----  196 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~----  196 (373)
                      ||++++++|+.+..|+..+...                    ....+.|+++|+||+|+.+.   ...++..+...    
T Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~  147 (187)
T 1zj6_A           91 VDSTDRERISVTREELYKMLAH--------------------EDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSI  147 (187)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTS--------------------GGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGC
T ss_pred             EeCCCHHHHHHHHHHHHHHHhc--------------------hhhCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhh
Confidence            9999999999999998887651                    11357899999999999753   34455444332    


Q ss_pred             -HcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        197 -ENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       197 -~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                       ..+++++++||++|.||+++|++|++.+..
T Consensus       148 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (187)
T 1zj6_A          148 KDHQWHIQACCALTGEGLCQGLEWMMSRLKI  178 (187)
T ss_dssp             CSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred             cCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence             345689999999999999999999988764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.92  E-value=8.1e-25  Score=217.08  Aligned_cols=213  Identities=17%  Similarity=0.099  Sum_probs=140.1

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc--ceee--eEEEEEEEECCEEEEEEEEeCCCcccc---------cccchhhcc
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSA--AFITQTVCLDDVTIRFEIWDTAGQERY---------HTLAPMYYR  112 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~e~~---------~~l~~~~~~  112 (373)
                      +++++|.   |||||+|||++.++...  +.|+  ++....+.+++..  +.+|||+|++..         ...+..+++
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   80 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMIR   80 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHHH
Confidence            6788887   99999999999876533  3333  4455677777764  689999998752         344567899


Q ss_pred             CCcEEEEEEECCCHhhHHH--HHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160        113 NAQAAIIVYDITNQDTFGR--AKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE  190 (373)
Q Consensus       113 ~ad~iilv~D~~~~~Sf~~--i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e  190 (373)
                      +||++++|+|+++..++.+  +.+|+.   .                        .+.|++||+||+|+...   . ..+
T Consensus        81 ~ad~il~V~D~~~~~~~~d~~i~~~l~---~------------------------~~~p~ilv~NK~D~~~~---~-~~~  129 (439)
T 1mky_A           81 EADLVLFVVDGKRGITKEDESLADFLR---K------------------------STVDTILVANKAENLRE---F-ERE  129 (439)
T ss_dssp             TCSEEEEEEETTTCCCHHHHHHHHHHH---H------------------------HTCCEEEEEESCCSHHH---H-HHH
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHH---H------------------------cCCCEEEEEeCCCCccc---c-HHH
Confidence            9999999999987655443  223322   2                        25799999999998431   1 122


Q ss_pred             H-HHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccceee
Q psy18160        191 G-EAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILT  268 (373)
Q Consensus       191 ~-~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~~~  268 (373)
                      + .+++ .+++ +++++||++|.|++++|+++++.+.+......  ..                                
T Consensus       130 ~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~--~~--------------------------------  174 (439)
T 1mky_A          130 VKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLE--SK--------------------------------  174 (439)
T ss_dssp             THHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSS--SC--------------------------------
T ss_pred             HHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccch--hc--------------------------------
Confidence            3 4444 4566 78999999999999999999988753210000  00                                


Q ss_pred             cccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCcc--cccccCCccccccccceeeeecce
Q psy18160        269 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQF--HEYQESTIGGECQSSHSISFSMPT  346 (373)
Q Consensus       269 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~  346 (373)
                                             ......+|++++|++|+|||||++++++..+  ...+..| .        .+.....
T Consensus       175 -----------------------~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gt-T--------~d~~~~~  222 (439)
T 1mky_A          175 -----------------------PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGT-T--------RDPVDDE  222 (439)
T ss_dssp             -----------------------CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC---------------CCEE
T ss_pred             -----------------------cccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCC-c--------CCceEEE
Confidence                                   0001237999999999999999999998764  3334333 3        3444466


Q ss_pred             eeeCCeEEEEEehhhHH
Q psy18160        347 KNRLNNNVPITFVWVIM  363 (373)
Q Consensus       347 ~~v~~~~~~l~iw~~~~  363 (373)
                      +.++|++  +.+||++-
T Consensus       223 i~~~g~~--~~l~Dt~G  237 (439)
T 1mky_A          223 VFIDGRK--YVFVDTAG  237 (439)
T ss_dssp             EEETTEE--EEESSCSC
T ss_pred             EEECCEE--EEEEECCC
Confidence            7778874  67899863

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.92  E-value=2.4e-24  Score=187.41  Aligned_cols=155  Identities=15%  Similarity=0.178  Sum_probs=122.7

Q ss_pred             CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      .+....++++++|.   |||||+++|+++.+...  |+|...  +.+.+++  +.+.+|||+|++++..++..+++++|+
T Consensus        16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (181)
T 2h17_A           16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF   91 (181)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            34456689999997   99999999999988444  777554  4566665  778999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH-
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA-  195 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~-  195 (373)
                      +++|||++++.+|+.+..|+..+...                    ....++|++||+||+|+.+.   ...++..+.. 
T Consensus        92 ii~v~D~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~  148 (181)
T 2h17_A           92 VIVVVDSTDRERISVTREELYKMLAH--------------------EDLRKAGLLIFANKQDVKEC---MTVAEISQFLK  148 (181)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTC--------------------GGGTTCEEEEEEECTTSTTC---CCHHHHHHHTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhC--------------------hhhCCCeEEEEEECCCcccC---CCHHHHHHHhC
Confidence            99999999999999999988877651                    12367899999999999653   3444444432 


Q ss_pred             ----HHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        196 ----EENGLLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       196 ----~~~~~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                          +..+++++++||++|.||+++|++|++.
T Consensus       149 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          149 LTSIKDHQWHIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             GGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred             cccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence                2245689999999999999999998754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.91  E-value=2.5e-23  Score=183.01  Aligned_cols=158  Identities=37%  Similarity=0.583  Sum_probs=140.5

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ...++++++|.   |||||+++|++..+...   |++.++....+.+++..+.+++||++|++++..++..+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            34588999997   99999999999988755   8888998899999999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||+++..+|+++..|+..+..                     ....+.|+++|+||+|+.+. +.+..+++.+++...
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~i~~v~nK~Dl~~~-~~~~~~~a~~l~~~~  164 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRD---------------------HADSNIVIMLVGNKSDLRHL-RAVPTDEARAFAEKN  164 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECGGGGGG-CCSCHHHHHHHHHHT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECcccccc-cccCHHHHHHHHHHc
Confidence            99999999999999889887665                     23357899999999999764 557788899999999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      ++.++++||+++.|++++|+.|.+.+
T Consensus       165 ~~~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          165 GLSFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999999998764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.91  E-value=2.9e-24  Score=188.08  Aligned_cols=155  Identities=16%  Similarity=0.240  Sum_probs=123.5

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ...++++++|.   |||||+++|+++.+...   |++.++.  .+..+  .+.+.+|||+|++++..++..+++++|+++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            35689999997   99999999999988754   7777654  34444  467899999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH---
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA---  195 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~---  195 (373)
                      +|||++++.+|+.+..|+..+...                    ....++|++||+||+|+...   ...++..+..   
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~  152 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDK--------------------PQLQGIPVLVLGNKRDLPGA---LDEKELIEKMNLS  152 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTC--------------------GGGTTCCEEEEEECTTSTTC---CCHHHHHHHTTGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhC--------------------cccCCCCEEEEEECCCCccC---CCHHHHHHHhChh
Confidence            999999999999999988877651                    12357899999999999754   2233322211   


Q ss_pred             --HHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        196 --EENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       196 --~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                        ...+++++++||++|.||+++|++|++.+.+
T Consensus       153 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          153 AIQDREICCYSISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             GCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred             hhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence              1234679999999999999999999988764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.91  E-value=1.1e-23  Score=183.51  Aligned_cols=155  Identities=14%  Similarity=0.137  Sum_probs=124.4

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ...++++++|.   |||||+++|+++.....  |++..  .+.+.+++  +.+.+|||+|++++..++..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            35689999998   99999999998883333  66643  45666664  678999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH---
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE---  196 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~---  196 (373)
                      |||++++.+|+.+..|+..+...                    ....++|+++|+||+|+.+.   ...++..+...   
T Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~  148 (186)
T 1ksh_A           92 VVDSADRQRMQDCQRELQSLLVE--------------------ERLAGATLLIFANKQDLPGA---LSCNAIQEALELDS  148 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTC--------------------GGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGG
T ss_pred             EEECcCHHHHHHHHHHHHHHHhC--------------------hhcCCCcEEEEEeCccCCCC---CCHHHHHHHhChhh
Confidence            99999999999999998877651                    12357899999999999764   33344333221   


Q ss_pred             --HcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        197 --ENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       197 --~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                        ..+++++++||++|.||+++|++|.+.+.+
T Consensus       149 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  180 (186)
T 1ksh_A          149 IRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  180 (186)
T ss_dssp             CCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence              345689999999999999999999988764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.91  E-value=3.7e-25  Score=193.32  Aligned_cols=157  Identities=12%  Similarity=0.230  Sum_probs=121.5

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhC--cCcCc---ceeeeEEEEEEEE---CCEEEEEEEEeCCCcccccccchhhccCCc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINV--VFYPY---LFSAAFITQTVCL---DDVTIRFEIWDTAGQERYHTLAPMYYRNAQ  115 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~--~~~~~---Tig~~~~~~~i~~---~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad  115 (373)
                      .++++++|.   |||||+++|++.  .+...   |+|.++..+.+.+   ++..+.+.+|||+|+++|..+++.+++++|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            368999998   999999999985  44433   8888887666654   346788999999999999999999999999


Q ss_pred             EEEEEEECCCH-hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccC---HHHH
Q psy18160        116 AAIIVYDITNQ-DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE---YSEG  191 (373)
Q Consensus       116 ~iilv~D~~~~-~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~---~~e~  191 (373)
                      ++++|||++++ .+|+.+..|+..+...                      .+++|++|||||+|+.+. +.+.   .+.+
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~----------------------~~~~piilv~nK~Dl~~~-~~~~~~~~~~~  138 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR----------------------ASSSPVILVGTHLDVSDE-KQRKACMSKIT  138 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHH----------------------CTTCEEEEEEECGGGCCH-HHHHHHHHHHH
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhh----------------------CCCCcEEEEEECCCcccc-hhhHHHHHHHH
Confidence            99999999997 5899999999887661                      247899999999999754 3332   2345


Q ss_pred             HHHHHHcCCe----EEEEcCCCCC-CHHHHHHHHHHHcch
Q psy18160        192 EAYAEENGLL----FMETSAKTAM-NVNEIFVEIAKKLPK  226 (373)
Q Consensus       192 ~~~~~~~~~~----~~evSak~~~-gI~~lf~~L~~~i~~  226 (373)
                      .++++.++++    ++++||+++. +++++++.|.+.+.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          139 KELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             HHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence            5666667776    9999999997 999999999887764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.91  E-value=2.4e-23  Score=197.81  Aligned_cols=157  Identities=25%  Similarity=0.448  Sum_probs=137.4

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..++++++|.   |||||+++|+++.+...   |++..+ ...+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            3479999997   99999999999988655   666555 5677889999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccC
Q psy18160        120 VYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVE  187 (373)
Q Consensus       120 v~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~  187 (373)
                      |||++++.+|+.+. .|+..+...                      .+++|++||+||+|+...           .+.+.
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~----------------------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~  290 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHH----------------------CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPIT  290 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH----------------------CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCC
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhh----------------------CCCCcEEEEEEchhcccccchhhhcccccccccc
Confidence            99999999999987 688877661                      237899999999998653           25688


Q ss_pred             HHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        188 YSEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       188 ~~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      .+++.++++..++ +++++||++|.||+++|+.|++.+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  329 (332)
T 2wkq_A          291 YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  329 (332)
T ss_dssp             HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence            8899999999997 9999999999999999999998775

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=7.4e-24  Score=183.81  Aligned_cols=156  Identities=15%  Similarity=0.187  Sum_probs=122.1

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ...++++++|.   |||||++++.++++...  |+|..  ...+.+++  +.+.+|||+|++++..++..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            34589999997   99999999999888544  77644  35566665  678999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH---
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE---  196 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~---  196 (373)
                      |||++++.+|+.+..|+..+...                    ....+.|+++|+||+|+.+.   ...++..+...   
T Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~  148 (183)
T 1moz_A           92 VVDSTDKDRMSTASKELHLMLQE--------------------EELQDAALLVFANKQDQPGA---LSASEVSKELNLVE  148 (183)
T ss_dssp             EEETTCTTTHHHHHHHHHHHTTS--------------------STTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHcC--------------------hhhCCCeEEEEEECCCCCCC---CCHHHHHHHhCccc
Confidence            99999999999999988877651                    12467899999999999654   34444444332   


Q ss_pred             --HcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        197 --ENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       197 --~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                        ..+++++++||++|.||+++|++|.+.+.++
T Consensus       149 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          149 LKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             CCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             ccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence              1245799999999999999999999988654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.91  E-value=2.7e-24  Score=188.05  Aligned_cols=154  Identities=20%  Similarity=0.210  Sum_probs=123.9

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..++++++|.   |||||+++|.++.+...  |++..  .+.+.+++  +.+.+|||+|++++..++..+++++|++++|
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   96 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV   96 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence            4589999997   99999999998887655  66644  44566654  6789999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH-----HH
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA-----YA  195 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~-----~~  195 (373)
                      ||++++++|+.+..|+..+...                    ....++|+++|+||+|+.+.   ...++..+     .+
T Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~  153 (189)
T 2x77_A           97 VDSTDRDRMGVAKHELYALLDE--------------------DELRKSLLLIFANKQDLPDA---ASEAEIAEQLGVSSI  153 (189)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTC--------------------STTTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGC
T ss_pred             EeCCCHHHHHHHHHHHHHHHhh--------------------hhcCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhc
Confidence            9999999999999888777551                    23357899999999999764   22233222     12


Q ss_pred             HHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       196 ~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      +..+++++++||+++.||+++|++|.+.+.+
T Consensus       154 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  184 (189)
T 2x77_A          154 MNRTWTIVKSSSKTGDGLVEGMDWLVERLRE  184 (189)
T ss_dssp             CSSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEccCCCccCHHHHHHHHHHHHHh
Confidence            2335689999999999999999999988864

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.84  E-value=5.7e-26  Score=201.49  Aligned_cols=160  Identities=26%  Similarity=0.461  Sum_probs=134.6

Q ss_pred             CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCc
Q psy18160         42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQ  115 (373)
Q Consensus        42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad  115 (373)
                      ......++++++|.   |||||+++|+++.+...   |++..+ ...+.+++..+.+++|||+|++++..++..+++++|
T Consensus        25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  103 (204)
T 3th5_A           25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD  103 (204)
Confidence            34456789999997   99999999999888665   665444 456677888899999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------
Q psy18160        116 AAIIVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------  183 (373)
Q Consensus       116 ~iilv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------  183 (373)
                      ++++|||++++.+|+.+. .|+..+..                      ..+++|++||+||+|+.+..           
T Consensus       104 ~iilv~D~~~~~s~~~~~~~~~~~l~~----------------------~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~  161 (204)
T 3th5_A          104 VFLICFSLVSPASFENVRAKWYPEVRH----------------------HCPNTPIILVGTKLDLRDDKDTIEKLKEKKL  161 (204)
Confidence            999999999999999987 78777655                      12378999999999997542           


Q ss_pred             cccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        184 RCVEYSEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       184 ~~v~~~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      +.+..+++.++++..++ +++++||++|.||+++|++|++.+
T Consensus       162 ~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          162 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            24667778888988887 899999999999999999988754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=8.5e-25  Score=217.94  Aligned_cols=215  Identities=13%  Similarity=0.042  Sum_probs=139.5

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCC--------cccccccchhhccC
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAG--------QERYHTLAPMYYRN  113 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G--------~e~~~~l~~~~~~~  113 (373)
                      ..+++++|.   |||||+|+|++.++...  ++|.++......+......+.+|||+|        ++++...+..++++
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~  102 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE  102 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence            357888887   99999999999888754  777777666666655556799999999        77788888889999


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160        114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA  193 (373)
Q Consensus       114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~  193 (373)
                      +|++|+|+|..+..+..  ..|+..+.+                       ..+.|++||+||+|+.+. +    ++..+
T Consensus       103 ad~il~VvD~~~~~~~~--d~~l~~~l~-----------------------~~~~pvilV~NK~D~~~~-~----~~~~e  152 (456)
T 4dcu_A          103 ADVIIFMVNGREGVTAA--DEEVAKILY-----------------------RTKKPVVLAVNKLDNTEM-R----ANIYD  152 (456)
T ss_dssp             CSEEEEEEESSSCSCHH--HHHHHHHHT-----------------------TCCSCEEEEEECC--------------CC
T ss_pred             CCEEEEEEeCCCCCChH--HHHHHHHHH-----------------------HcCCCEEEEEECccchhh-h----hhHHH
Confidence            99999999987644332  233333322                       157899999999998643 1    11112


Q ss_pred             HHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccceeecccC
Q psy18160        194 YAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTMANS  272 (373)
Q Consensus       194 ~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~~~~~~~  272 (373)
                      +. .+++ .++++||++|.|++++++.+.+.+......                                          
T Consensus       153 ~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~------------------------------------------  189 (456)
T 4dcu_A          153 FY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPET------------------------------------------  189 (456)
T ss_dssp             SG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCSS------------------------------------------
T ss_pred             HH-HcCCCceEEeecccccchHHHHHHHHhhccccccc------------------------------------------
Confidence            22 2233 568999999999999999998765421000                                          


Q ss_pred             CCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCc-ccccccCCccccccccceeeeecceeeeCC
Q psy18160        273 NNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQ-FHEYQESTIGGECQSSHSISFSMPTKNRLN  351 (373)
Q Consensus       273 ~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~-f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~  351 (373)
                                         ......+|++++|++++|||||+++++... +.....+++.        .++....+..++
T Consensus       190 -------------------~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt--------~~~~~~~~~~~~  242 (456)
T 4dcu_A          190 -------------------KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTT--------RDAVDTSFTYNQ  242 (456)
T ss_dssp             -------------------CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC--------------CTTSEEEEETT
T ss_pred             -------------------ccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeE--------EEEEEEEEEECC
Confidence                               001124799999999999999999999654 3333334444        344445566677


Q ss_pred             eEEEEEehhhHH
Q psy18160        352 NNVPITFVWVIM  363 (373)
Q Consensus       352 ~~~~l~iw~~~~  363 (373)
                      .  .++|||+|-
T Consensus       243 ~--~~~l~DT~G  252 (456)
T 4dcu_A          243 Q--EFVIVDTAG  252 (456)
T ss_dssp             E--EEEETTGGG
T ss_pred             c--eEEEEECCC
Confidence            6  788999985

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.89  E-value=3e-24  Score=202.85  Aligned_cols=151  Identities=17%  Similarity=0.182  Sum_probs=116.8

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcC-----c-ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc---cchhhccCCcE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYP-----Y-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT---LAPMYYRNAQA  116 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~-----~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~---l~~~~~~~ad~  116 (373)
                      |++++|+   |||||++++.++.+..     . |+|.++..    ++ ..+.++||||+|||+|..   +++.||+++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            5788887   9999999988664432     1 88877642    23 348899999999999974   46899999999


Q ss_pred             EEEEEECCCH--hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC------cccCH
Q psy18160        117 AIIVYDITNQ--DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR------RCVEY  188 (373)
Q Consensus       117 iilv~D~~~~--~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~------~~v~~  188 (373)
                      +|+|||++++  +++..+.+|+..+..                      ..+++|++|||||+|+.++.      |.+..
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~----------------------~~~~ipillvgNK~DL~~~~~R~~~~R~V~~  133 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYK----------------------VNPSINIEVLIHKVDGLSEDFKVDAQRDIMQ  133 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHH----------------------HCTTCEEEEECCCCCSSCSHHHHHHHHHHHH
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhh----------------------cCCCCcEEEEEECcccCchhhhhhHHHHhhH
Confidence            9999999998  223333333443333                      23689999999999997642      45777


Q ss_pred             HHHHHHHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        189 SEGEAYAEE----NGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       189 ~e~~~~~~~----~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      ++++++|+.    ++++|+|+||++ .||.++|..+++.+...
T Consensus       134 ~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          134 RTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             HHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred             HHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHhh
Confidence            888888886    688999999997 69999999999888654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.89  E-value=2e-23  Score=186.32  Aligned_cols=160  Identities=14%  Similarity=0.102  Sum_probs=112.6

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCE-EEEEEEEeCCCcccccc-cchhhccCCcEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDV-TIRFEIWDTAGQERYHT-LAPMYYRNAQAA  117 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~-~v~l~i~Dt~G~e~~~~-l~~~~~~~ad~i  117 (373)
                      ...++++++|.   |||||+++|+++.|...  +++.++.  .+.+++. .+.+.+|||+|+++|.. ++..+++++|++
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            34578999997   99999999999988776  5555554  3666654 68899999999999988 889999999999


Q ss_pred             EEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc-CHHHHHHH-
Q psy18160        118 IIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV-EYSEGEAY-  194 (373)
Q Consensus       118 ilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v-~~~e~~~~-  194 (373)
                      ++|||+++.. ++..+.+|+..+...                  ......++|++||+||+|+....... ..+...+. 
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l  144 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLID------------------SMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKEL  144 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHH------------------HHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhh------------------hhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHH
Confidence            9999999864 566665544443220                  00123578999999999997642110 00111111 


Q ss_pred             -------------------------------HH-Hc--CCeEEEEcCCCC------CCHHHHHHHHHHHc
Q psy18160        195 -------------------------------AE-EN--GLLFMETSAKTA------MNVNEIFVEIAKKL  224 (373)
Q Consensus       195 -------------------------------~~-~~--~~~~~evSak~~------~gI~~lf~~L~~~i  224 (373)
                                                     +. .+  +++|+|+||++|      .||+++|++|++.+
T Consensus       145 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          145 NTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             HHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             HHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence                                           11 11  567999999999      99999999998753

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.89  E-value=3.7e-24  Score=197.30  Aligned_cols=159  Identities=17%  Similarity=0.240  Sum_probs=120.8

Q ss_pred             CCCcEEEEEEc-----------C-ChhHHHHHhhh---CcCcCc---ce-eeeEEEEEEE--------------ECCEEE
Q psy18160         44 QSDCMAQIWLK-----------D-RVDCMTQIVIN---VVFYPY---LF-SAAFITQTVC--------------LDDVTI   90 (373)
Q Consensus        44 ~~~~i~ivvlG-----------~-GKTsLl~rl~~---~~~~~~---Ti-g~~~~~~~i~--------------~~~~~v   90 (373)
                      ....++++++|           + |||||+++|++   +.+...   |+ +.++..+.+.              +++..+
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence            44568999999           6 99999999999   455443   33 4444333222              467889


Q ss_pred             EEEEEe-----------------------CCCcccccccchhhcc---------------------CCcEEEEEEECCCH
Q psy18160         91 RFEIWD-----------------------TAGQERYHTLAPMYYR---------------------NAQAAIIVYDITNQ  126 (373)
Q Consensus        91 ~l~i~D-----------------------t~G~e~~~~l~~~~~~---------------------~ad~iilv~D~~~~  126 (373)
                      .++|||                       ++|+++|..++..+++                     +||++|+|||++++
T Consensus        96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~  175 (255)
T 3c5h_A           96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG  175 (255)
T ss_dssp             CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred             EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence            999999                       8889999999999988                     89999999999998


Q ss_pred             --hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH-cCCeEE
Q psy18160        127 --DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-NGLLFM  203 (373)
Q Consensus       127 --~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~-~~~~~~  203 (373)
                        .||+.+.+|+..+...                    ....++|++||+||+|+.+. +.+  +++.++++. .+++++
T Consensus       176 ~~~s~~~~~~~l~~i~~~--------------------~~~~~~piilV~NK~Dl~~~-~~v--~~~~~~~~~~~~~~~~  232 (255)
T 3c5h_A          176 MNRNFDDQLKFVSNLYNQ--------------------LAKTKKPIVVVLTKCDEGVE-RYI--RDAHTFALSKKNLQVV  232 (255)
T ss_dssp             ---CHHHHHHHHHHHHHH--------------------HHHTTCCEEEEEECGGGBCH-HHH--HHHHHHHHTSSSCCEE
T ss_pred             chhhHHHHHHHHHHHHHH--------------------hccCCCCEEEEEEccccccc-HHH--HHHHHHHHhcCCCeEE
Confidence              9999999999888651                    12257899999999999654 333  577788876 478999


Q ss_pred             EEcCCCCCCHHHHHHHHHHHcc
Q psy18160        204 ETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       204 evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++||++|.||+++|++|++.+.
T Consensus       233 e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          233 ETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHhc
Confidence            9999999999999999988663

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.88  E-value=1.1e-22  Score=174.39  Aligned_cols=147  Identities=16%  Similarity=0.126  Sum_probs=113.5

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCccccc------ccchhhcc--
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH------TLAPMYYR--  112 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~------~l~~~~~~--  112 (373)
                      ..+++++|.   |||||+++|++..+...   +.+.++....+.+++  ..+.+|||+|++++.      .+...+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            368899997   99999999998776544   334455555666766  468999999999875      34466765  


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH
Q psy18160        113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE  192 (373)
Q Consensus       113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~  192 (373)
                      ++|++++|+|+++.++   ...|+..+.+                        .++|+++|+||+|+... +.+.. ++.
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~------------------------~~~p~ilv~nK~Dl~~~-~~~~~-~~~  131 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLME------------------------MGANLLLALNKMDLAKS-LGIEI-DVD  131 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHH------------------------TTCCEEEEEECHHHHHH-TTCCC-CHH
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHh------------------------cCCCEEEEEEchHhccc-cChhh-HHH
Confidence            8999999999988543   3456666554                        36899999999998543 33332 467


Q ss_pred             HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        193 AYAEENGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       193 ~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      ++++.++++++++||++|.||+++|++|++.+
T Consensus       132 ~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          132 KLEKILGVKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             HHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             HHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence            88888899999999999999999999998876

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.87  E-value=4.5e-22  Score=190.06  Aligned_cols=155  Identities=18%  Similarity=0.224  Sum_probs=118.6

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ...++++++|.   |||||+++|.+..+...  |++..+  ..+..++  +.+.||||+|+++|..++..+++.+|++|+
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            35678999998   99999999999988766  666554  3444444  679999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH----
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA----  195 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~----  195 (373)
                      |||++++.+|+.+..|+..+...                    ....++|++||+||+|+.+.   ...++.....    
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilV~NK~Dl~~~---~~~~~i~~~~~~~~  295 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAE--------------------DELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHS  295 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTC--------------------GGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTCTT
T ss_pred             EEECCchHHHHHHHHHHHHHHhh--------------------hccCCCeEEEEEECccCCcc---cCHHHHHHHhchhh
Confidence            99999999999999887776541                    23358999999999999764   2233332221    


Q ss_pred             -HHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        196 -EENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       196 -~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                       +..+++++++||++|.||+++|+.|++.+.+
T Consensus       296 ~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          296 LRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             CCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred             hhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence             1234579999999999999999999988764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.87  E-value=1e-21  Score=185.82  Aligned_cols=157  Identities=17%  Similarity=0.249  Sum_probs=126.6

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhC--cCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccc-----cccchhhcc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINV--VFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERY-----HTLAPMYYR  112 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~--~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~-----~~l~~~~~~  112 (373)
                      .++++++|.   |||||+++|+++  .+...    |++.++.  .+.+++ .+.+.+|||+|++++     ..++..+++
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   79 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ   79 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence            478999997   999999999987  33321    7777665  444554 578999999999998     788999999


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-Ccc----cC
Q psy18160        113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-RRC----VE  187 (373)
Q Consensus       113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-~~~----v~  187 (373)
                      ++|++++|||++++++|+++..|...+...                  . ...+++|++||+||+|+.+. .+.    +.
T Consensus        80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l------------------~-~~~~~~piilv~NK~Dl~~~~~r~~~~~v~  140 (307)
T 3r7w_A           80 MVQVLIHVFDVESTEVLKDIEIFAKALKQL------------------R-KYSPDAKIFVLLHKMDLVQLDKREELFQIM  140 (307)
T ss_dssp             TCSEEEEEEETTCSCHHHHHHHHHHHHHHH------------------H-HHCTTCEEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHH------------------H-HhCCCCeEEEEEecccccchhhhhHHHHHH
Confidence            999999999999999999998776655441                  1 12367999999999999762 133    56


Q ss_pred             HHHHHHHHHHcC---CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        188 YSEGEAYAEENG---LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       188 ~~e~~~~~~~~~---~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .+++.++++.+|   ++++++||++ .++.++|..++..+..
T Consensus       141 ~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          141 MKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             HHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence            678889999987   7899999999 8999999999887653

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.86  E-value=4.9e-21  Score=172.96  Aligned_cols=158  Identities=14%  Similarity=0.083  Sum_probs=113.8

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCc------cc----ccccch
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQ------ER----YHTLAP  108 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~------e~----~~~l~~  108 (373)
                      ...++++++|.   |||||+++|++..+...   ....+.....+..++  +.+.+|||+|+      ++    +.. ..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~  103 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-IT  103 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence            45689999997   99999999999987633   111223233334444  57899999999      43    222 23


Q ss_pred             hhccCCcEEEEEEECCCHhhHHH--HHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160        109 MYYRNAQAAIIVYDITNQDTFGR--AKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV  186 (373)
Q Consensus       109 ~~~~~ad~iilv~D~~~~~Sf~~--i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v  186 (373)
                      .++..+|++++|||++++.+|..  ...|+..+..                      ..+++|+++|+||+|+.+. +.+
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~----------------------~~~~~piilv~nK~Dl~~~-~~~  160 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKS----------------------VFSNKSIVIGFNKIDKCNM-DSL  160 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHT----------------------CC-CCCEEEEEECGGGCC---CC
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHH----------------------hhcCCcEEEEEeCcccCCc-hhh
Confidence            45788999999999999988752  2345555543                      2247899999999999765 445


Q ss_pred             CHH---HHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        187 EYS---EGEAYAEENG--LLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       187 ~~~---e~~~~~~~~~--~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      ..+   .+.++++..+  ++++++||++|.||+++|++|++.+.+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          161 SIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             CHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence            443   4667777777  89999999999999999999999886543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.86  E-value=5.8e-23  Score=193.84  Aligned_cols=131  Identities=15%  Similarity=0.057  Sum_probs=108.6

Q ss_pred             hHHHHHhhhCcCc-Cc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHh-hHHHH
Q psy18160         58 DCMTQIVINVVFY-PY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD-TFGRA  132 (373)
Q Consensus        58 TsLl~rl~~~~~~-~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~-Sf~~i  132 (373)
                      .+|+.+|+.+.|. ..   |+|..+. ..+..++   .+++|||  +++|..+++.+++++|++|+|||++++. +|+.+
T Consensus        31 ~sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l  104 (301)
T 1u0l_A           31 GERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII  104 (301)
T ss_dssp             CCEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH
T ss_pred             CcEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH
Confidence            3799999999997 44   9995553 3332333   6899999  9999999999999999999999999997 79999


Q ss_pred             HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC--CeEEEEcCCCC
Q psy18160        133 KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG--LLFMETSAKTA  210 (373)
Q Consensus       133 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~--~~~~evSak~~  210 (373)
                      .+|+..+..                        .++|++||+||+||.+. +.+  +++.++++.++  ++++++||++|
T Consensus       105 ~~~l~~~~~------------------------~~~piilv~NK~DL~~~-~~v--~~~~~~~~~~~~~~~~~~~SAktg  157 (301)
T 1u0l_A          105 DKFLVLAEK------------------------NELETVMVINKMDLYDE-DDL--RKVRELEEIYSGLYPIVKTSAKTG  157 (301)
T ss_dssp             HHHHHHHHH------------------------TTCEEEEEECCGGGCCH-HHH--HHHHHHHHHHTTTSCEEECCTTTC
T ss_pred             HHHHHHHHH------------------------CCCCEEEEEeHHHcCCc-hhH--HHHHHHHHHHhhhCcEEEEECCCC
Confidence            999987755                        47899999999999754 322  55777888777  89999999999


Q ss_pred             CCHHHHHHHHH
Q psy18160        211 MNVNEIFVEIA  221 (373)
Q Consensus       211 ~gI~~lf~~L~  221 (373)
                      .||+++|..+.
T Consensus       158 ~gv~~lf~~l~  168 (301)
T 1u0l_A          158 MGIEELKEYLK  168 (301)
T ss_dssp             TTHHHHHHHHS
T ss_pred             cCHHHHHHHhc
Confidence            99999998763

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.86  E-value=2.6e-21  Score=166.75  Aligned_cols=149  Identities=17%  Similarity=0.140  Sum_probs=113.8

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ...++++++|.   |||||+++|++..+...   +++.++....+.+++..  +.+|||+|++++..++..+++.+|+++
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            34578999997   99999999999988765   45555555667777754  679999999999999999999999999


Q ss_pred             EEEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH
Q psy18160        119 IVYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA  195 (373)
Q Consensus       119 lv~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~  195 (373)
                      +|||+++   +.+++.+    ..+..                        .++|+++|+||+|+.+.    ..++.....
T Consensus        84 ~v~d~~~~~~~~~~~~l----~~~~~------------------------~~~p~ilv~nK~Dl~~~----~~~~~~~~~  131 (178)
T 2lkc_A           84 LVVAADDGVMPQTVEAI----NHAKA------------------------ANVPIIVAINKMDKPEA----NPDRVMQEL  131 (178)
T ss_dssp             EEEETTCCCCHHHHHHH----HHHGG------------------------GSCCEEEEEETTTSSCS----CHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHH----HHHHh------------------------CCCCEEEEEECccCCcC----CHHHHHHHH
Confidence            9999988   4444332    22222                        46899999999999653    223333332


Q ss_pred             HHc-------C--CeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        196 EEN-------G--LLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       196 ~~~-------~--~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      ...       +  ++++++||++|.||+++|++|++.+...
T Consensus       132 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          132 MEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME  172 (178)
T ss_dssp             TTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred             HhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence            222       2  5899999999999999999999887643

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.86  E-value=1.8e-21  Score=169.52  Aligned_cols=152  Identities=16%  Similarity=0.141  Sum_probs=118.7

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCccccc------ccchhhcc-
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH------TLAPMYYR-  112 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~------~l~~~~~~-  112 (373)
                      ..++++++|.   |||||+++|++..+...   +++.++....+.+++  +.+.+|||+|++++.      .++..+++ 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            4578999997   99999999998765444   445556666777766  668999999999885      34666765 


Q ss_pred             -CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160        113 -NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG  191 (373)
Q Consensus       113 -~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~  191 (373)
                       .+|++++|+|.++   ++....|+..+..                        .++|+++|+||+|+... +.+. +++
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~------------------------~~~piilv~nK~Dl~~~-~~~~-~~~  134 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLYLTLQLME------------------------MGANLLLALNKMDLAKS-LGIE-IDV  134 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHHHHHHHHT------------------------TTCCEEEEEECHHHHHH-TTCC-CCH
T ss_pred             cCCCEEEEEecchh---HHHHHHHHHHHHh------------------------cCCCEEEEEEhhhcccc-ccch-HHH
Confidence             5999999999875   5556667766654                        46899999999998643 2233 356


Q ss_pred             HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      .++++.++++++++||+++.||+++|++|++.+....
T Consensus       135 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          135 DKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             HHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence            7888888999999999999999999999998886543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.85  E-value=1.6e-21  Score=170.94  Aligned_cols=157  Identities=12%  Similarity=0.068  Sum_probs=110.1

Q ss_pred             cCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCC----------cccc
Q psy18160         40 SGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAG----------QERY  103 (373)
Q Consensus        40 ~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G----------~e~~  103 (373)
                      +..+....++++++|.   |||||+++|++..|...   +++.+.......+++   .+.+|||+|          ++.+
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~   92 (195)
T 1svi_A           16 EQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAW   92 (195)
T ss_dssp             GGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHH
T ss_pred             hhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHH
Confidence            3445556789999997   99999999999875543   555444444445554   489999999          7888


Q ss_pred             cccchhhccCC---cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCC
Q psy18160        104 HTLAPMYYRNA---QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP  180 (373)
Q Consensus       104 ~~l~~~~~~~a---d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~  180 (373)
                      ..++..+++.+   |++++|+|++++.++.+.. ++..+..                        .++|+++|+||+|+.
T Consensus        93 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~------------------------~~~p~i~v~nK~Dl~  147 (195)
T 1svi_A           93 GRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY------------------------YGIPVIVIATKADKI  147 (195)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH------------------------TTCCEEEEEECGGGS
T ss_pred             HHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH------------------------cCCCEEEEEECcccC
Confidence            88888888877   9999999999988776643 2222222                        467999999999997


Q ss_pred             CCCcccCH--HHHHH-HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        181 TSRRCVEY--SEGEA-YAEENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       181 ~~~~~v~~--~e~~~-~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +. +.+..  +++.+ ++...+.+++++||+++.||+++|++|.+.+.
T Consensus       148 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          148 PK-GKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CG-GGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             Ch-HHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence            64 22221  22332 32234678999999999999999999988764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.85  E-value=9.1e-22  Score=171.46  Aligned_cols=160  Identities=15%  Similarity=0.076  Sum_probs=118.7

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCC-----------cccccccchhhcc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAG-----------QERYHTLAPMYYR  112 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G-----------~e~~~~l~~~~~~  112 (373)
                      ++++++|.   |||||+++|++..+... +.+.++....+.++    .+.+|||+|           ++++..++..+++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~   77 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE   77 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence            57889997   99999999999988765 33433333444444    588999999           7788888888898


Q ss_pred             C-CcEEEEEEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160        113 N-AQAAIIVYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE  190 (373)
Q Consensus       113 ~-ad~iilv~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e  190 (373)
                      + ++++++||++.|..+|..+ ..|...-..         .........   ....++|+++|+||+|+... +   .++
T Consensus        78 ~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~---------~~~~~~~~~---~~~~~~piilv~nK~Dl~~~-~---~~~  141 (190)
T 2cxx_A           78 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEI---------PIDVEFYQF---LRELDIPTIVAVNKLDKIKN-V---QEV  141 (190)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCC---------CHHHHHHHH---HHHTTCCEEEEEECGGGCSC-H---HHH
T ss_pred             hhhccCCEEEEEEcchhhhhHHHhhhccCcc---------HHHHHHHHH---HHhcCCceEEEeehHhccCc-H---HHH
Confidence            8 9999999999999999887 567542000         000000000   11257899999999999764 2   567


Q ss_pred             HHHHHHHcCCe-------EEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        191 GEAYAEENGLL-------FMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       191 ~~~~~~~~~~~-------~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +.++++.++++       ++++||++|.||+++|++|++.+.+.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          142 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence            78888888874       79999999999999999999988654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.84  E-value=3.9e-21  Score=162.74  Aligned_cols=144  Identities=17%  Similarity=0.062  Sum_probs=104.2

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccc-------cccchhhccC
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERY-------HTLAPMYYRN  113 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~-------~~l~~~~~~~  113 (373)
                      .+++++|.   |||||+++|.+..+...    +...++....+..++.  .+.+|||+|++.+       ...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            57888887   99999999999876532    3334455566777775  5789999999873       3445667899


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160        114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA  193 (373)
Q Consensus       114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~  193 (373)
                      +|++++|||++++.+...  .|+..+..                     .  .++|+++|+||+|+.+.     .+++.+
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~---------------------~--~~~p~ilv~nK~Dl~~~-----~~~~~~  129 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLR---------------------R--KGKPVILVATKVDDPKH-----ELYLGP  129 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHH---------------------H--HTCCEEEEEECCCSGGG-----GGGCGG
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHH---------------------h--cCCCEEEEEECcccccc-----hHhHHH
Confidence            999999999998654332  22222222                     0  36799999999999653     133445


Q ss_pred             HHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        194 YAEENGL-LFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       194 ~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      ++ .+++ +++++||++|.|++++|++|++.+
T Consensus       130 ~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          130 LY-GLGFGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             GG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             HH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence            55 5677 899999999999999999998875

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.84  E-value=4.3e-21  Score=165.84  Aligned_cols=148  Identities=17%  Similarity=0.156  Sum_probs=110.5

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc--------hhhc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA--------PMYY  111 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~--------~~~~  111 (373)
                      ..+++++|.   |||||+++|++..+...    +.+.++....+.+++..  +.+|||+|++++....        ..++
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQEI   81 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHHH
Confidence            368999997   99999999998865322    34456667788888754  7899999997653221        2358


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160        112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG  191 (373)
Q Consensus       112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~  191 (373)
                      +++|++++|||++++.+++. ..|+..+..                     ....++|+++|+||+|+.+...       
T Consensus        82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~---------------------~~~~~~p~ilv~NK~Dl~~~~~-------  132 (172)
T 2gj8_A           82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIA---------------------RLPAKLPITVVRNKADITGETL-------  132 (172)
T ss_dssp             HTCSEEEEEEETTTCCCCSH-HHHCHHHHH---------------------HSCTTCCEEEEEECHHHHCCCC-------
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---------------------hcccCCCEEEEEECccCCcchh-------
Confidence            89999999999999888763 467666655                     2335789999999999854311       


Q ss_pred             HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                       .+++..+.+++++||++|.||+++|++|.+.+..
T Consensus       133 -~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          133 -GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             -EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred             -hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence             1122246789999999999999999999987753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.83  E-value=2.7e-20  Score=162.54  Aligned_cols=156  Identities=14%  Similarity=0.129  Sum_probs=114.7

Q ss_pred             cCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCC----------ccccc
Q psy18160         40 SGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAG----------QERYH  104 (373)
Q Consensus        40 ~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G----------~e~~~  104 (373)
                      ...+....++++++|.   |||||+++|++..+...  +.+.+........+.   .+.+|||+|          ++.+.
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~   92 (195)
T 3pqc_A           16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWK   92 (195)
T ss_dssp             TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHH
T ss_pred             hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHH
Confidence            3445566789999997   99999999999985554  555444333333443   477999999          77788


Q ss_pred             ccchhhccCC---cEEEEEEECCCHhhHH--HHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160        105 TLAPMYYRNA---QAAIIVYDITNQDTFG--RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL  179 (373)
Q Consensus       105 ~l~~~~~~~a---d~iilv~D~~~~~Sf~--~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl  179 (373)
                      .++..+++.+   |++++|+|.++..+..  .+.+|+   ..                        .++|+++|+||+|+
T Consensus        93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~---~~------------------------~~~p~i~v~nK~Dl  145 (195)
T 3pqc_A           93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWM---KS------------------------LNIPFTIVLTKMDK  145 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH------------------------TTCCEEEEEECGGG
T ss_pred             HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHH---HH------------------------cCCCEEEEEEChhc
Confidence            8888888776   9999999998764333  333333   22                        26799999999999


Q ss_pred             CCCC-cccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        180 PTSR-RCVEYSEGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       180 ~~~~-~~v~~~e~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      .+.. +....+++.+++...+ ++++++||++|.||+++|++|.+.+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          146 VKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             SCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             CChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            6531 2344455666666644 78999999999999999999998775

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.82  E-value=1.1e-20  Score=191.82  Aligned_cols=158  Identities=15%  Similarity=0.203  Sum_probs=120.9

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEE------EEE--CCEEEEEEEEeCCCcccccccchh
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQT------VCL--DDVTIRFEIWDTAGQERYHTLAPM  109 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~------i~~--~~~~v~l~i~Dt~G~e~~~~l~~~  109 (373)
                      ....++++++|.   |||||++++++..|...   |+|.++..+.      +.+  ++..+.+.+|||+|++.|..+...
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            345689999997   99999999999988765   8888876542      222  334678999999999999999999


Q ss_pred             hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160        110 YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS  189 (373)
Q Consensus       110 ~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~  189 (373)
                      +++++|++|+|||+++.   +.+..|+..+...                      .++.|++||+||+|+... +.+..+
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~----------------------~~~~pvilV~NK~Dl~~~-~~v~~~  171 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKY----------------------GGKSPVIVVMNKIDENPS-YNIEQK  171 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHH----------------------SSSCCEEEEECCTTTCTT-CCCCHH
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHh----------------------CCCCCEEEEEECCCcccc-cccCHH
Confidence            99999999999999765   4566788877762                      246899999999999765 667888


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       190 e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      ++.+++...+.+++++||++|.||+++|+.|++.+.+.
T Consensus       172 ~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          172 KINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             HHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTCT
T ss_pred             HHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhcc
Confidence            88889888999999999999999999999999887653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.82  E-value=3.1e-20  Score=171.31  Aligned_cols=149  Identities=13%  Similarity=0.054  Sum_probs=113.0

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc-ceee--eEEEEEEEECCEEEEEEEEeCCCccccccc------chhhc--
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY-LFSA--AFITQTVCLDDVTIRFEIWDTAGQERYHTL------APMYY--  111 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l------~~~~~--  111 (373)
                      ..++++++|.   |||||+|+|++..+... ..|.  +.....+..++  ..+.+|||+|++.+...      ...++  
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            3578999997   99999999999876544 2333  33333444444  67899999999888753      35666  


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160        112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG  191 (373)
Q Consensus       112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~  191 (373)
                      ..+|++++|+|+++.++..   .|...+..                        .++|+++|+||+|+... +.+.. ++
T Consensus        82 ~~~d~ii~V~D~t~~~~~~---~~~~~l~~------------------------~~~pvilv~NK~Dl~~~-~~i~~-~~  132 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQSL---YLLLEILE------------------------MEKKVILAMTAIDEAKK-TGMKI-DR  132 (258)
T ss_dssp             SCCSEEEEEEETTSCHHHH---HHHHHHHT------------------------TTCCEEEEEECHHHHHH-TTCCB-CH
T ss_pred             cCCCEEEEEeCCCchhhHH---HHHHHHHh------------------------cCCCEEEEEECcCCCCc-cchHH-HH
Confidence            5899999999999866433   35555544                        36899999999998643 33332 46


Q ss_pred             HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      .++++.++++++++||++|.||+++|+.|.+.+.
T Consensus       133 ~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          133 YELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence            7888999999999999999999999999988654

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.81  E-value=2.1e-20  Score=173.69  Aligned_cols=149  Identities=15%  Similarity=0.100  Sum_probs=114.7

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCccccc------ccchhhcc--CC
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH------TLAPMYYR--NA  114 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~------~l~~~~~~--~a  114 (373)
                      .++++++|.   |||||+|+|++..+... ..|.++..+...++. .+.+.+|||+|++.+.      .+.+.|+.  .+
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~   81 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA   81 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence            468899997   99999999998764433 445544445555665 5679999999999886      45667776  69


Q ss_pred             cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH
Q psy18160        115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY  194 (373)
Q Consensus       115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~  194 (373)
                      |++++|+|+++.+++   ..|...+..                        .++|+++|+||+|+... +.+. .++.++
T Consensus        82 d~vi~V~D~t~~e~~---~~~~~~l~~------------------------~~~p~ilv~NK~Dl~~~-~~~~-~~~~~l  132 (272)
T 3b1v_A           82 DSILNVVDATNLERN---LYLTTQLIE------------------------TGIPVTIALNMIDVLDG-QGKK-INVDKL  132 (272)
T ss_dssp             SEEEEEEEGGGHHHH---HHHHHHHHH------------------------TCSCEEEEEECHHHHHH-TTCC-CCHHHH
T ss_pred             CEEEEEecCCchHhH---HHHHHHHHh------------------------cCCCEEEEEEChhhCCc-CCcH-HHHHHH
Confidence            999999999886543   345555544                        46899999999998643 2233 356778


Q ss_pred             HHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       195 ~~~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++.++++++++||++|.||+++|++|++.+.
T Consensus       133 ~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          133 SYHLGVPVVATSALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             HHHHTSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred             HHHcCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence            8889999999999999999999999988654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.81  E-value=1.1e-19  Score=171.99  Aligned_cols=159  Identities=12%  Similarity=0.033  Sum_probs=121.2

Q ss_pred             CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeee--EEEEEEEECCEEEEEEEEeCCCccccc----------
Q psy18160         42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAA--FITQTVCLDDVTIRFEIWDTAGQERYH----------  104 (373)
Q Consensus        42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~--~~~~~i~~~~~~v~l~i~Dt~G~e~~~----------  104 (373)
                      +++...-+++++|.   |||||+|+|++.++...  +.+.+  .....+..+ ....+.||||+|+.++.          
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence            34556678999997   99999999999988754  22221  112223333 14678899999996654          


Q ss_pred             ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc
Q psy18160        105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR  184 (373)
Q Consensus       105 ~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~  184 (373)
                      .....+++.+|++++|+|+++..++.+...|+..+..                        .++|+++|+||+|+... +
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~------------------------~~~pvilV~NK~Dl~~~-~  138 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP------------------------LNKPVIVVINKIDKIGP-A  138 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG------------------------GCCCEEEEEECGGGSSS-G
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh------------------------cCCCEEEEEECccCCCC-H
Confidence            4567788999999999999998888887777766654                        46899999999999733 4


Q ss_pred             ccCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        185 CVEYSEGEAYAEENG--LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       185 ~v~~~e~~~~~~~~~--~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ....+...++.+.++  .+++++||++|.|++++|+.|.+.+..
T Consensus       139 ~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          139 KNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             GGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred             HHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence            455666777888775  789999999999999999999998864

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.80  E-value=1e-19  Score=162.95  Aligned_cols=162  Identities=10%  Similarity=-0.015  Sum_probs=110.2

Q ss_pred             cCCCCCCcEEEEEEcC---ChhHHHHHhhhCcC-cCc--ceeeeEEEEEEEEC-CEEEEEEEEeCCC----------ccc
Q psy18160         40 SGKRQSDCMAQIWLKD---RVDCMTQIVINVVF-YPY--LFSAAFITQTVCLD-DVTIRFEIWDTAG----------QER  102 (373)
Q Consensus        40 ~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~-~~~--Tig~~~~~~~i~~~-~~~v~l~i~Dt~G----------~e~  102 (373)
                      ...+....++++++|.   |||||+++|++..+ ...  +.|.+.......+. .....+.||||+|          ++.
T Consensus        22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~  101 (223)
T 4dhe_A           22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH  101 (223)
T ss_dssp             GGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred             hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence            3445556789999998   99999999999873 222  44443333344443 3346689999999          455


Q ss_pred             ccccchhhccC---CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160        103 YHTLAPMYYRN---AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL  179 (373)
Q Consensus       103 ~~~l~~~~~~~---ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl  179 (373)
                      +..+...|++.   +|++++|+|+++..+.. ...|+..+..                        .++|+++|+||+|+
T Consensus       102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~------------------------~~~p~i~v~nK~Dl  156 (223)
T 4dhe_A          102 WEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP------------------------TGKPIHSLLTKCDK  156 (223)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG------------------------GCCCEEEEEECGGG
T ss_pred             HHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh------------------------cCCCEEEEEecccc
Confidence            56667777766   78899999998754422 2234444433                        46799999999998


Q ss_pred             CCCCccc--CHHHHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        180 PTSRRCV--EYSEGEAYAEE-------NGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       180 ~~~~~~v--~~~e~~~~~~~-------~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      ... +..  ..++..+....       .+.+++++||++|.||+++|++|.+.+...
T Consensus       157 ~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          157 LTR-QESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             SCH-HHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             CCh-hhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence            653 111  11222232332       457899999999999999999999888643

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.79  E-value=3e-20  Score=166.04  Aligned_cols=147  Identities=18%  Similarity=0.160  Sum_probs=104.4

Q ss_pred             ccCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchh
Q psy18160         39 MSGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPM  109 (373)
Q Consensus        39 ~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~  109 (373)
                      |..+.....++++++|.   |||||+++|++..+...      +++.++         ..+.+.+|||+|++++..++..
T Consensus         4 ~~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~   74 (218)
T 1nrj_B            4 MGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSD   74 (218)
T ss_dssp             ------CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHH
T ss_pred             CCCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHH
Confidence            33444556789999997   99999999999987653      333222         3456899999999999999999


Q ss_pred             hccC----CcEEEEEEECC-CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc
Q psy18160        110 YYRN----AQAAIIVYDIT-NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR  184 (373)
Q Consensus       110 ~~~~----ad~iilv~D~~-~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~  184 (373)
                      +++.    +|++++|||++ ++.+|..+..|+..+....                 ......++|++||+||+|+... +
T Consensus        75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~p~ilv~nK~Dl~~~-~  136 (218)
T 1nrj_B           75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSIT-----------------ESSCENGIDILIACNKSELFTA-R  136 (218)
T ss_dssp             HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHH-----------------HHHSTTCCCEEEEEECTTSTTC-C
T ss_pred             HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcc-----------------cccccCCCCEEEEEEchHhccc-C
Confidence            9887    99999999999 8899999998888776510                 0013467999999999999765 3


Q ss_pred             ccC------HHHHHHHHHHcCCeEEEEcCCCCCC
Q psy18160        185 CVE------YSEGEAYAEENGLLFMETSAKTAMN  212 (373)
Q Consensus       185 ~v~------~~e~~~~~~~~~~~~~evSak~~~g  212 (373)
                      .+.      .+++.+++...+.+++++||+++.+
T Consensus       137 ~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          137 PPSKIKDALESEIQKVIERRKKSLNEVERKINEE  170 (218)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             CHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            333      4556777777788999999998875

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.78  E-value=2.3e-19  Score=165.25  Aligned_cols=144  Identities=14%  Similarity=0.055  Sum_probs=110.9

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc----------cchhhc-
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT----------LAPMYY-  111 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~----------l~~~~~-  111 (373)
                      +++++|.   |||||+|+|++..+...   +.+.+.....+.+++.  .+.+|||||+..+..          +.+.|+ 
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~   80 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSVI   80 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence            6888887   99999999999875544   4445566677777775  688999999988764          556677 


Q ss_pred             -cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160        112 -RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE  190 (373)
Q Consensus       112 -~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e  190 (373)
                       +++|++++|+|+++.+++..+..|   +..                        .++|+++|+||+|+... +.+.. .
T Consensus        81 ~~~~d~vi~VvDas~~~~~~~l~~~---l~~------------------------~~~pvilv~NK~Dl~~~-~~~~~-~  131 (256)
T 3iby_A           81 DLEYDCIINVIDACHLERHLYLTSQ---LFE------------------------LGKPVVVALNMMDIAEH-RGISI-D  131 (256)
T ss_dssp             HSCCSEEEEEEEGGGHHHHHHHHHH---HTT------------------------SCSCEEEEEECHHHHHH-TTCEE-C
T ss_pred             hCCCCEEEEEeeCCCchhHHHHHHH---HHH------------------------cCCCEEEEEEChhcCCc-CCcHH-H
Confidence             899999999999987665544332   222                        36899999999998643 22221 2


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       191 ~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                      ...+++.++++++++||++|.|++++|+.|.+.
T Consensus       132 ~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          132 TEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             HHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            456778889999999999999999999999875

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.77  E-value=7.9e-19  Score=173.83  Aligned_cols=155  Identities=14%  Similarity=0.081  Sum_probs=114.5

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCc----------ccccccc
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQ----------ERYHTLA  107 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~----------e~~~~l~  107 (373)
                      ...++++++|.   |||||+|+|++..+...    +.+.+.....+.+++..  +.||||+|+          |+|..++
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHH
Confidence            45689999997   99999999999876522    33344445566777754  789999998          5555444


Q ss_pred             h-hhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160        108 P-MYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV  186 (373)
Q Consensus       108 ~-~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v  186 (373)
                      . .+++.+|++++|+|++++.++++. +|+..+..                        .+.|+++|+||+|+.+. +.+
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~------------------------~~~~iiiv~NK~Dl~~~-~~~  304 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE------------------------AGKAVVIVVNKWDAVDK-DES  304 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH------------------------TTCEEEEEEECGGGSCC-CTT
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH------------------------cCCcEEEEEECccCCCc-chH
Confidence            4 478899999999999998888776 47666655                        47899999999999765 334


Q ss_pred             CHHHHHH-HHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        187 EYSEGEA-YAEE----NGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       187 ~~~e~~~-~~~~----~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      ..++..+ +.+.    .+.+++++||++|.||+++|+.+.+.+...
T Consensus       305 ~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          305 TMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             HHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence            4444332 2232    357999999999999999999998877643

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.76  E-value=1.3e-18  Score=173.16  Aligned_cols=157  Identities=14%  Similarity=0.098  Sum_probs=117.3

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCC----------ccccccc
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAG----------QERYHTL  106 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G----------~e~~~~l  106 (373)
                      ....++++++|.   |||||+++|++......    +.+.+.....+.+++.  .+.||||+|          +|+|..+
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            345688999997   99999999997753322    3333433456667775  688999999          7777776


Q ss_pred             chh-hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc
Q psy18160        107 APM-YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC  185 (373)
Q Consensus       107 ~~~-~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~  185 (373)
                      +.. +++.+|++++|+|+++..+.. ..+|+..+..                        .+.|++||+||+|+.+. +.
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~------------------------~~~~~ilv~NK~Dl~~~-~~  323 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE------------------------AGKAVVIVVNKWDAVDK-DE  323 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH------------------------TTCEEEEEEECGGGSCC-CS
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH------------------------cCCCEEEEEEChhcCCC-ch
Confidence            654 788999999999998754422 2345555544                        46899999999999765 55


Q ss_pred             cCHHHHHHHHHHc-----CCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        186 VEYSEGEAYAEEN-----GLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       186 v~~~e~~~~~~~~-----~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      +..+++.+.++..     +.+++++||++|.||+++|+.+.+.+....
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~  371 (456)
T 4dcu_A          324 STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS  371 (456)
T ss_dssp             SHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence            6677777777665     578999999999999999999998876543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.76  E-value=3.3e-19  Score=175.11  Aligned_cols=156  Identities=13%  Similarity=0.076  Sum_probs=114.3

Q ss_pred             CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc------
Q psy18160         41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA------  107 (373)
Q Consensus        41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~------  107 (373)
                      ..+....++++++|.   |||||+++|++..+...    ....+...+.+.+.+.. .+.+|||+|++++..+.      
T Consensus        28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~  106 (423)
T 3qq5_A           28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEK  106 (423)
T ss_dssp             C---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHH
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHH
Confidence            345567789999997   99999999999887533    23334445666676542 68999999999887653      


Q ss_pred             -hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160        108 -PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV  186 (373)
Q Consensus       108 -~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v  186 (373)
                       ..+++++|++++|||+...+   ....|+..+..                        .++|+++|+||+|+... +..
T Consensus       107 ~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~------------------------~~~piIvV~NK~Dl~~~-~~~  158 (423)
T 3qq5_A          107 ARRVFYRADCGILVTDSAPTP---YEDDVVNLFKE------------------------MEIPFVVVVNKIDVLGE-KAE  158 (423)
T ss_dssp             HHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHH------------------------TTCCEEEECCCCTTTTC-CCT
T ss_pred             HHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHh------------------------cCCCEEEEEeCcCCCCc-cHH
Confidence             44788999999999994333   23456666665                        37899999999999775 222


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        187 EYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       187 ~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                        +.+.++++.++++++++||++|.|++++|+.|.+.+.+.
T Consensus       159 --~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          159 --ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             --HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             --HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence              566677777889999999999999999999999998654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.76  E-value=5.4e-19  Score=164.43  Aligned_cols=149  Identities=13%  Similarity=0.057  Sum_probs=110.9

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc----------chhh
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL----------APMY  110 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l----------~~~~  110 (373)
                      .++++++|.   |||||+|+|++..+...   +...+.....+..++.  .+.+|||||++.+...          ...|
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            478999997   99999999999876444   3444555666666664  4678999999887632          3333


Q ss_pred             c--cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160        111 Y--RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY  188 (373)
Q Consensus       111 ~--~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~  188 (373)
                      +  +.+|++++|+|+++.++...   |...+..                        .++|+++|+||+|+.+. +.+. 
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~------------------------~~~p~ivv~NK~Dl~~~-~~~~-  131 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLY---LTLQLLE------------------------LGIPCIVALNMLDIAEK-QNIR-  131 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHH---HHHHHHH------------------------HTCCEEEEEECHHHHHH-TTEE-
T ss_pred             HhhcCCCEEEEEecCCChHHHHH---HHHHHHh------------------------cCCCEEEEEECccchhh-hhHH-
Confidence            3  79999999999998665443   3333433                        26799999999998543 2221 


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       189 ~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .+..++++.++++++++||++|.|++++|+.|.+.+..
T Consensus       132 ~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~~  169 (274)
T 3i8s_A          132 IEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKAN  169 (274)
T ss_dssp             ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            23467788889999999999999999999999877653

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.76  E-value=2.4e-18  Score=159.60  Aligned_cols=150  Identities=17%  Similarity=0.059  Sum_probs=115.1

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc------cchhhc--c
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT------LAPMYY--R  112 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~------l~~~~~--~  112 (373)
                      .++++++|.   |||||+++|++..+...   +++.+.....+.+++..  +.+|||||+..+..      +...|+  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            468899997   99999999999877443   55556666677777754  88999999988876      566666  6


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH
Q psy18160        113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE  192 (373)
Q Consensus       113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~  192 (373)
                      ++|++++|+|+++.+   ....|...+..                       ...+|+++|+||+|+.+. +.+.. +..
T Consensus        81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~-----------------------~~~~p~ilv~NK~Dl~~~-~~~~~-~~~  132 (271)
T 3k53_A           81 NADVIVDIVDSTCLM---RNLFLTLELFE-----------------------MEVKNIILVLNKFDLLKK-KGAKI-DIK  132 (271)
T ss_dssp             CCSEEEEEEEGGGHH---HHHHHHHHHHH-----------------------TTCCSEEEEEECHHHHHH-HTCCC-CHH
T ss_pred             CCcEEEEEecCCcch---hhHHHHHHHHh-----------------------cCCCCEEEEEEChhcCcc-cccHH-HHH
Confidence            899999999998854   23334444444                       123899999999998543 22222 266


Q ss_pred             HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        193 AYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       193 ~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .+++.++++++++||++|.|++++|+.+.+.+..
T Consensus       133 ~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~  166 (271)
T 3k53_A          133 KMRKELGVPVIPTNAKKGEGVEELKRMIALMAEG  166 (271)
T ss_dssp             HHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            7888899999999999999999999999887653

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.74  E-value=1.1e-17  Score=166.88  Aligned_cols=150  Identities=13%  Similarity=0.070  Sum_probs=97.0

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc--------hhhc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA--------PMYY  111 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~--------~~~~  111 (373)
                      .++++++|.   |||||+|+|++.+....    +.+.++....+.+++  +.+.+|||+|++++...+        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            478999997   99999999999864332    334455556777777  468999999998766443        3468


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160        112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG  191 (373)
Q Consensus       112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~  191 (373)
                      +.+|++++|+|++++.+++.+..+...+..                     .  .+.|+++|+||+|+... ..+   +.
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~---------------------l--~~~piIvV~NK~Dl~~~-~~~---~~  363 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAA---------------------H--PAAKFLTVANKLDRAAN-ADA---LI  363 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHH---------------------C--TTSEEEEEEECTTSCTT-THH---HH
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHh---------------------c--CCCCEEEEEECcCCCCc-cch---hH
Confidence            999999999999999888655444443333                     1  26899999999999765 222   22


Q ss_pred             HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +++.+....+++++||++|.||+++|++|.+.+.
T Consensus       364 ~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          364 RAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             HHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence            3454443478999999999999999999998775

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.74  E-value=6.4e-18  Score=159.23  Aligned_cols=150  Identities=16%  Similarity=0.088  Sum_probs=104.8

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceee--eEEEEEEEECCEEEEEEEEeCCCccc--------ccccchh
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSA--AFITQTVCLDDVTIRFEIWDTAGQER--------YHTLAPM  109 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~e~--------~~~l~~~  109 (373)
                      ....+++++|.   |||||+|+|++.++...  ..+.  +.....+..+  ...+.+|||||+.+        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            45567888887   99999999999988643  1111  1111122223  46789999999876        3445567


Q ss_pred             hccCCcEEEEEEECCCHhhHHHHHHHH-HHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160        110 YYRNAQAAIIVYDITNQDTFGRAKSWV-KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY  188 (373)
Q Consensus       110 ~~~~ad~iilv~D~~~~~Sf~~i~~~l-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~  188 (373)
                      +++.+|++++|||++++.+..  ..|+ ..+..                     . .++.|+++|+||+|+... +.   
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~---------------------~-~~~~p~ilV~NK~Dl~~~-~~---  134 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPE--DELVARALKP---------------------L-VGKVPILLVGNKLDAAKY-PE---  134 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGG---------------------G-TTTSCEEEEEECGGGCSS-HH---
T ss_pred             HHhcCCEEEEEEECCCCCChH--HHHHHHHHHh---------------------h-cCCCCEEEEEECcccCCc-hH---
Confidence            899999999999999875544  3443 33433                     1 247899999999998653 11   


Q ss_pred             HHHHHHHHHc-C-CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        189 SEGEAYAEEN-G-LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       189 ~e~~~~~~~~-~-~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                       +..+.++.+ + .+++++||++|.|++++|+.|.+.+.
T Consensus       135 -~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          135 -EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP  172 (301)
T ss_dssp             -HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred             -HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence             022333332 3 47899999999999999999988765

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.72  E-value=6.2e-18  Score=162.41  Aligned_cols=142  Identities=16%  Similarity=0.199  Sum_probs=113.1

Q ss_pred             HHhhhCcCcCc----------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCC------
Q psy18160         62 QIVINVVFYPY----------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN------  125 (373)
Q Consensus        62 ~rl~~~~~~~~----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~------  125 (373)
                      .|+....|.+.          |+|...  ..+.++  .+.+++|||+||++++.+|..|+++++++|||||+++      
T Consensus       159 ~ri~~~~Y~PT~~Dil~~~~~T~Gi~~--~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~  234 (353)
T 1cip_A          159 DRIAQPNYIPTQQDVLRTRVKTTGIVE--THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLA  234 (353)
T ss_dssp             HHHTSTTCCCCHHHHHTCCCCCCSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEET
T ss_pred             HHHhcCCCCCCccccccccCceeceEE--EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECcccccccc
Confidence            55666666553          677653  456665  4789999999999999999999999999999999999      


Q ss_pred             ----HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC--------------cccC
Q psy18160        126 ----QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR--------------RCVE  187 (373)
Q Consensus       126 ----~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~--------------~~v~  187 (373)
                          ..++++...|+..+...                    ....++|++|||||+|+....              ..++
T Consensus       235 ed~~~nr~~e~~~~~~~i~~~--------------------~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~  294 (353)
T 1cip_A          235 EDEEMNRMHESMKLFDSICNN--------------------KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNT  294 (353)
T ss_dssp             TEEEEEHHHHHHHHHHHHHTC--------------------GGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSC
T ss_pred             ccchhhhHHHHHHHHHHHHcC--------------------ccccCCcEEEEEECcCchhhhccccchhhcccccCCCCC
Confidence                46788888888887651                    123579999999999985321              1367


Q ss_pred             HHHHHHHHH-----------HcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        188 YSEGEAYAE-----------ENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       188 ~~e~~~~~~-----------~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      .+++.+++.           ..++.+++|||+++.||+++|.++++.+.+.
T Consensus       295 ~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~  345 (353)
T 1cip_A          295 YEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  345 (353)
T ss_dssp             HHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence            888888887           3567899999999999999999999988653

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.72  E-value=1.5e-17  Score=161.62  Aligned_cols=142  Identities=15%  Similarity=0.156  Sum_probs=110.3

Q ss_pred             HHhhhCcCcCc----------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCC------
Q psy18160         62 QIVINVVFYPY----------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN------  125 (373)
Q Consensus        62 ~rl~~~~~~~~----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~------  125 (373)
                      .|+....+.+.          |+|.++  +.+.+++  +.++||||+||++|+.+|..|+++++++|||||+++      
T Consensus       183 ~ri~~~~Y~PT~~Dil~~r~~TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~  258 (402)
T 1azs_C          183 DVIKQDDYVPSDQDLLRCRVLTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIR  258 (402)
T ss_dssp             HHHTCTTCCCCHHHHHHCCCCCCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCT
T ss_pred             HHhhccccCCccccccccccceeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccc
Confidence            44455555554          777765  4666665  789999999999999999999999999999999999      


Q ss_pred             ----HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc---c------------
Q psy18160        126 ----QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC---V------------  186 (373)
Q Consensus       126 ----~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~---v------------  186 (373)
                          ..+|+++..|+..+...                    ....++|++|||||+|+... +.   +            
T Consensus       259 ed~~~ns~~e~~~~~~~i~~~--------------------~~~~~~piiLvgNK~DL~~~-ki~~~~~~l~~~fp~y~~  317 (402)
T 1azs_C          259 EDNQTNRLQEALNLFKSIWNN--------------------RWLRTISVILFLNKQDLLAE-KVLAGKSKIEDYFPEFAR  317 (402)
T ss_dssp             TTSCSBHHHHHHHHHHHHHTC--------------------TTCSSCCEEEEEECHHHHHH-HHHHCSSCGGGTCGGGGT
T ss_pred             cccccchHHHHHHHHHHHHhc--------------------ccCCCCeEEEEEEChhhhhh-hhcccccchhhccccccc
Confidence                88999999999888761                    12367899999999998543 21   1            


Q ss_pred             ---------------CHHHHHHHH-----HH--------cCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        187 ---------------EYSEGEAYA-----EE--------NGLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       187 ---------------~~~e~~~~~-----~~--------~~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                                     +.+++..|+     +.        .++.+++|||+++.||+++|..+.+.+.+..
T Consensus       318 ~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~~  387 (402)
T 1azs_C          318 YTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  387 (402)
T ss_dssp             CCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence                           135566653     22        2456789999999999999999988876543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.71  E-value=8.9e-18  Score=158.32  Aligned_cols=96  Identities=18%  Similarity=0.113  Sum_probs=82.5

Q ss_pred             cccccccchhhccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCC
Q psy18160        100 QERYHTLAPMYYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD  178 (373)
Q Consensus       100 ~e~~~~l~~~~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~D  178 (373)
                      ++++..+.+.+++++|++++|||++++. ++..+.+|+..+..                        .++|++||+||+|
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~------------------------~~~~~ilV~NK~D  121 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY------------------------FKVEPVIVFNKID  121 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH------------------------TTCEEEEEECCGG
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh------------------------CCCCEEEEEEccc
Confidence            7899999999999999999999999986 99999999987765                        5789999999999


Q ss_pred             CCCCCcccC-HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q psy18160        179 LPTSRRCVE-YSEGEAYAEENGLLFMETSAKTAMNVNEIFVEI  220 (373)
Q Consensus       179 l~~~~~~v~-~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L  220 (373)
                      +.+. +.++ .++..++++..+++++++||+++.|++++|..+
T Consensus       122 L~~~-~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l  163 (302)
T 2yv5_A          122 LLNE-EEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYL  163 (302)
T ss_dssp             GCCH-HHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHT
T ss_pred             CCCc-cccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhc
Confidence            9754 2223 456677788889999999999999999999765

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.71  E-value=1.1e-17  Score=160.66  Aligned_cols=145  Identities=13%  Similarity=0.138  Sum_probs=108.2

Q ss_pred             HHHhhhCcCcCc----------ceeeeEEEEEEEECC----EEEEEEEEeCCCcccccccchhhccCCcEEEEEEECC--
Q psy18160         61 TQIVINVVFYPY----------LFSAAFITQTVCLDD----VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDIT--  124 (373)
Q Consensus        61 l~rl~~~~~~~~----------Tig~~~~~~~i~~~~----~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~--  124 (373)
                      +.|+....+.+.          |.|...  ..+.+++    +.+.+++|||+||++|+.+|..|+++++++|+|||++  
T Consensus       142 ~~ri~~~~Y~PT~~D~~~~r~~T~Gi~e--~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~y  219 (354)
T 2xtz_A          142 LKRLSDINYIPTKEDVLYARVRTTGVVE--IQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEY  219 (354)
T ss_dssp             HHHHHSTTCCCCHHHHHHCCCCCCSEEE--EEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGT
T ss_pred             HHHHhcCCCCCCchheeeecccccceee--EEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECccc
Confidence            455666666654          455442  3444565    6789999999999999999999999999999999998  


Q ss_pred             --------CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc--c--------
Q psy18160        125 --------NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC--V--------  186 (373)
Q Consensus       125 --------~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~--v--------  186 (373)
                              +..+|+++..|+..+...                    ...+++|++|||||+|+..+ +.  +        
T Consensus       220 dq~l~e~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piiLvgNK~DL~~~-k~~~v~l~~~~~f  278 (354)
T 2xtz_A          220 DQTLFEDEQKNRMMETKELFDWVLKQ--------------------PCFEKTSFMLFLNKFDIFEK-KVLDVPLNVCEWF  278 (354)
T ss_dssp             TCBCSSCTTSBHHHHHHHHHHHHHTC--------------------GGGSSCEEEEEEECHHHHHH-HTTTSCGGGSGGG
T ss_pred             ccccccccchhHHHHHHHHHHHHHhc--------------------cccCCCeEEEEEECcchhhh-hcccccccccccc
Confidence                    788999999998887651                    12357899999999998532 11  1        


Q ss_pred             -----------CHHHHHHHHHH----------------cCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        187 -----------EYSEGEAYAEE----------------NGLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       187 -----------~~~e~~~~~~~----------------~~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                                 +.+++.+++..                ..+.+++|||+++.||+++|.++.+.+.+..
T Consensus       279 p~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~~~  347 (354)
T 2xtz_A          279 RDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRN  347 (354)
T ss_dssp             TTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHHHH
Confidence                       24677777543                1244689999999999999999998886543

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.71  E-value=6.4e-17  Score=165.16  Aligned_cols=153  Identities=16%  Similarity=0.214  Sum_probs=111.0

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCc--Cc---------C----c-ceeeeEEEEEEEE-----CCEEEEEEEEeCCCcc
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVV--FY---------P----Y-LFSAAFITQTVCL-----DDVTIRFEIWDTAGQE  101 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~--~~---------~----~-Tig~~~~~~~i~~-----~~~~v~l~i~Dt~G~e  101 (373)
                      ...+++++|.   |||||+++|+...  +.         +    . +.|.++....+.+     ++..+.++||||||++
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            3457788886   9999999998631  11         1    0 3344443333333     5667899999999999


Q ss_pred             cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160        102 RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT  181 (373)
Q Consensus       102 ~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  181 (373)
                      +|...+..+++.+|++|+|+|+++..+++....|.....                         .++|+++|+||+|+..
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-------------------------~~ipiIvViNKiDl~~  137 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-------------------------MDLEVVPVLNKIDLPA  137 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-------------------------TTCEEEEEEECTTSTT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-------------------------CCCCEEEeeeccCccc
Confidence            999999999999999999999999877777776765443                         3679999999999976


Q ss_pred             CCcccCHHHHHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        182 SRRCVEYSEGEAYAEENGLL---FMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       182 ~~~~v~~~e~~~~~~~~~~~---~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      . +  ..+...++.+.+++.   ++++||++|.||+++|+.|.+.+..
T Consensus       138 a-~--~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          138 A-D--PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             C-C--HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             c-c--HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence            4 1  233345666777764   9999999999999999999988864

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.71  E-value=4.6e-17  Score=162.46  Aligned_cols=146  Identities=14%  Similarity=0.106  Sum_probs=110.2

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcc-cccc--------cchhhc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQE-RYHT--------LAPMYY  111 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e-~~~~--------l~~~~~  111 (373)
                      ++++++|.   |||||+|+|++.++...    +...++....+.+++.  .+.+|||+|+. ++..        ....++
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            78999998   99999999999865422    3334555567777774  47899999988 6543        234678


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160        112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG  191 (373)
Q Consensus       112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~  191 (373)
                      +.+|++|+|+|++++.++++.. +++.+                          .+.|+++|+||+|+.+.   ++.+++
T Consensus       322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l--------------------------~~~piivV~NK~DL~~~---~~~~~~  371 (482)
T 1xzp_A          322 EKADIVLFVLDASSPLDEEDRK-ILERI--------------------------KNKRYLVVINKVDVVEK---INEEEI  371 (482)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHH-HHHHH--------------------------TTSSEEEEEEECSSCCC---CCHHHH
T ss_pred             hcccEEEEEecCCCCCCHHHHH-HHHHh--------------------------cCCCEEEEEECcccccc---cCHHHH
Confidence            8999999999999988876543 22211                          36799999999999653   445555


Q ss_pred             HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .+++. .+.+++++||++|.||+++|++|.+.+..
T Consensus       372 ~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          372 KNKLG-TDRHMVKISALKGEGLEKLEESIYRETQE  405 (482)
T ss_dssp             HHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred             HHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            55443 34689999999999999999999987763

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.70  E-value=5.1e-17  Score=156.68  Aligned_cols=153  Identities=14%  Similarity=0.085  Sum_probs=114.4

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc---------cch
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT---------LAP  108 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~---------l~~  108 (373)
                      ..++++++|.   |||||++++++..+...     |.+..  ...+..++  ..+.+|||+|...+..         ...
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~  241 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGIN--VGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAIL  241 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEE--EEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeecee--EEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHH
Confidence            4568888887   99999999998875432     33322  23343443  5689999999865421         112


Q ss_pred             hhccCCcEEEEEEECCCHh--hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160        109 MYYRNAQAAIIVYDITNQD--TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV  186 (373)
Q Consensus       109 ~~~~~ad~iilv~D~~~~~--Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v  186 (373)
                      .+...+|++++|+|+++..  +++...+|+..+...                     . .+.|+++|+||+|+... .  
T Consensus       242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~---------------------~-~~~piilV~NK~Dl~~~-~--  296 (357)
T 2e87_A          242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGE---------------------F-KDLPFLVVINKIDVADE-E--  296 (357)
T ss_dssp             GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHH---------------------T-TTSCEEEEECCTTTCCH-H--
T ss_pred             HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHh---------------------c-CCCCEEEEEECcccCCh-H--
Confidence            3445799999999999877  788888888887661                     1 27899999999999653 2  


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        187 EYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       187 ~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      ..+++.++++..+++++++||++|+||+++|++|.+.+...
T Consensus       297 ~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          297 NIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             HHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            23556677778889999999999999999999999887543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.69  E-value=3.5e-16  Score=153.23  Aligned_cols=160  Identities=11%  Similarity=0.070  Sum_probs=112.2

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc------ceeeeEEE---EEE---------EE---CCEEEEEEEEeCCC
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY------LFSAAFIT---QTV---------CL---DDVTIRFEIWDTAG   99 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~------Tig~~~~~---~~i---------~~---~~~~v~l~i~Dt~G   99 (373)
                      ....++++++|.   |||||+++|++......      +++.....   ..+         ..   ......+.+|||+|
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG   84 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG   84 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence            445689999997   99999999998544332      11100000   000         00   11236799999999


Q ss_pred             cccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160        100 QERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL  179 (373)
Q Consensus       100 ~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl  179 (373)
                      +++|......+++.+|++++|+|+++..++....+|+..+...                       ...|+++|+||+|+
T Consensus        85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-----------------------~~~~iivviNK~Dl  141 (403)
T 3sjy_A           85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-----------------------GVKNLIIVQNKVDV  141 (403)
T ss_dssp             CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-----------------------TCCCEEEEEECGGG
T ss_pred             cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-----------------------CCCCEEEEEECccc
Confidence            9999999999999999999999999887777777777666541                       22489999999999


Q ss_pred             CCCCcc-cCHHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        180 PTSRRC-VEYSEGEAYAEEN---GLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       180 ~~~~~~-v~~~e~~~~~~~~---~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .+.... ...++..++.+..   +++++++||++|.||+++++.|.+.+..
T Consensus       142 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          142 VSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             SCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             cchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence            753110 1112233333222   5689999999999999999999987754

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.69  E-value=2.9e-17  Score=155.75  Aligned_cols=142  Identities=14%  Similarity=0.167  Sum_probs=111.3

Q ss_pred             HHhhhCcCcCc----------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECC-------
Q psy18160         62 QIVINVVFYPY----------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDIT-------  124 (373)
Q Consensus        62 ~rl~~~~~~~~----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~-------  124 (373)
                      .|+....|.+.          |+|..  ...+.+++  +.+++|||+||++++.+|..|+++++++|+|||++       
T Consensus       133 ~Ri~~~~Y~PT~~Dilr~r~~TiGi~--~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~  208 (327)
T 3ohm_A          133 DRVADPSYLPTQQDVLRVRVPTTGII--EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLV  208 (327)
T ss_dssp             HHHHSTTCCCCHHHHTTCCCCCCSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCS
T ss_pred             HHHhccCCCccccchhcccCceeeEE--EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECcccccccc
Confidence            46666677665          77754  34555554  78999999999999999999999999999999665       


Q ss_pred             ---CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC---------------ccc
Q psy18160        125 ---NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR---------------RCV  186 (373)
Q Consensus       125 ---~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~---------------~~v  186 (373)
                         +..++++...|+..+...                    ....++|++|+|||+|+....               +.+
T Consensus       209 d~~~~nr~~es~~~~~~i~~~--------------------~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~  268 (327)
T 3ohm_A          209 ESDNENRMEESKALFRTIITY--------------------PWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQR  268 (327)
T ss_dssp             SCTTSBHHHHHHHHHHHHHTS--------------------GGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSS
T ss_pred             ccccHhHHHHHHHHHHHHhhh--------------------hccCCceEEEEEECchhhhhhhccchHhhhchhccCCCC
Confidence               567788877777777551                    223579999999999986431               146


Q ss_pred             CHHHHHHHHH----------HcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        187 EYSEGEAYAE----------ENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       187 ~~~e~~~~~~----------~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +.+++.++..          ..++.++++||+++.||+++|..+.+.+.++
T Consensus       269 ~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~  319 (327)
T 3ohm_A          269 DAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  319 (327)
T ss_dssp             CHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence            7888888843          3556789999999999999999999988754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.69  E-value=4.7e-17  Score=156.82  Aligned_cols=144  Identities=12%  Similarity=0.117  Sum_probs=107.8

Q ss_pred             HHHhhhCcCcCc----------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCC-----
Q psy18160         61 TQIVINVVFYPY----------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN-----  125 (373)
Q Consensus        61 l~rl~~~~~~~~----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~-----  125 (373)
                      +.|+....|.+.          |+|.+.  ..+.+++  +.+++|||+||++++.+|..|+++++++|||||+++     
T Consensus       166 ~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l  241 (362)
T 1zcb_A          166 LDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL  241 (362)
T ss_dssp             HHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEE
T ss_pred             HHHHhcCCCCCChhhhhhccCCccceEE--EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccc
Confidence            667777777765          677664  4566664  789999999999999999999999999999999999     


Q ss_pred             -----HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC---------------cc
Q psy18160        126 -----QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR---------------RC  185 (373)
Q Consensus       126 -----~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~---------------~~  185 (373)
                           ..+|++...|+..+...                    ....++|++|++||+|+..+.               ..
T Consensus       242 ~ed~~~n~~~es~~~~~~i~~~--------------------~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~  301 (362)
T 1zcb_A          242 MEDRQTNRLTESLNIFETIVNN--------------------RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDP  301 (362)
T ss_dssp             TTEEEEEHHHHHHHHHHHHHTC--------------------GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCT
T ss_pred             cccccccHHHHHHHHHHHHhcc--------------------hhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCC
Confidence                 77999999898887651                    123578999999999985321               12


Q ss_pred             cCHHHHHHHHH-----------HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        186 VEYSEGEAYAE-----------ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       186 v~~~e~~~~~~-----------~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      ++.+++.+++.           ..++.+++|||+++.||+++|.++.+.+.+..
T Consensus       302 ~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~  355 (362)
T 1zcb_A          302 HCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  355 (362)
T ss_dssp             TCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence            67788887762           34578999999999999999999998887543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.69  E-value=3.1e-17  Score=156.99  Aligned_cols=151  Identities=19%  Similarity=0.186  Sum_probs=114.8

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcc----cccccchhhccC---
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQE----RYHTLAPMYYRN---  113 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e----~~~~l~~~~~~~---  113 (373)
                      +++++|.   |||||++++++.++...     |.....  ..+.+++. ..+.||||+|+.    ++..+...|++.   
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~--g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~  236 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL--GMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIER  236 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE--EEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceE--EEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence            5778886   99999999998764322     444443  24555542 368899999964    345566667654   


Q ss_pred             CcEEEEEEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160        114 AQAAIIVYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE  190 (373)
Q Consensus       114 ad~iilv~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e  190 (373)
                      +|++|+|+|+++   +.+++.+..|+.++..+.                   ....+.|++||+||+|+...     .+.
T Consensus       237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~-------------------~~l~~~p~ilV~NK~Dl~~~-----~e~  292 (342)
T 1lnz_A          237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN-------------------LRLTERPQIIVANKMDMPEA-----AEN  292 (342)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC-------------------SSTTTSCBCBEEECTTSTTH-----HHH
T ss_pred             ccEEEEEEECCcccccChHHHHHHHHHHHHHhh-------------------hhhcCCCEEEEEECccCCCC-----HHH
Confidence            999999999998   789999999998887721                   11257899999999998653     244


Q ss_pred             HHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        191 GEAYAEENG--LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       191 ~~~~~~~~~--~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ..++++.+.  .+++++||+++.||+++|++|.+.+.+
T Consensus       293 ~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          293 LEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN  330 (342)
T ss_dssp             HHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             HHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence            666777776  689999999999999999999988864

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.68  E-value=1.5e-16  Score=162.29  Aligned_cols=154  Identities=16%  Similarity=0.200  Sum_probs=112.8

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCc--CcC-------------c-ceeeeEEE--EEEEE---CCEEEEEEEEeCCCc
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVV--FYP-------------Y-LFSAAFIT--QTVCL---DDVTIRFEIWDTAGQ  100 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~--~~~-------------~-Tig~~~~~--~~i~~---~~~~v~l~i~Dt~G~  100 (373)
                      +...+++++|.   |||||+++|+...  +..             . ..|.++..  ..+.+   ++..+.++||||+|+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            34567788886   9999999998631  110             0 12222211  12222   566789999999999


Q ss_pred             ccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCC
Q psy18160        101 ERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP  180 (373)
Q Consensus       101 e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~  180 (373)
                      ++|...+..+++.+|++|+|+|+++..+++....|.....                         .++|+++|+||+|+.
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-------------------------~~ipiIvviNKiDl~  138 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-------------------------QDLVIIPVINKIDLP  138 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-------------------------TTCEEEEEEECTTST
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-------------------------CCCCEEEEEeccCcc
Confidence            9999888899999999999999999888877777755432                         368999999999997


Q ss_pred             CCCcccCHHHHHHHHHHcCC---eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        181 TSRRCVEYSEGEAYAEENGL---LFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       181 ~~~~~v~~~e~~~~~~~~~~---~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .. +  ..+...++.+.+++   +++++||++|.||+++|+.|++.+..
T Consensus       139 ~a-~--~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          139 SA-D--VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             TC-C--HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             cc-C--HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence            64 1  22334556666676   48999999999999999999988864

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.68  E-value=5.7e-16  Score=151.98  Aligned_cols=155  Identities=14%  Similarity=0.106  Sum_probs=105.4

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhC---cCcCc-----ceeeeEEEEEEEE-------------C--C----EEEEEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINV---VFYPY-----LFSAAFITQTVCL-------------D--D----VTIRFEI   94 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~---~~~~~-----Tig~~~~~~~i~~-------------~--~----~~v~l~i   94 (373)
                      ...++++++|.   |||||+++|.+.   .+...     |++..|....+..             +  +    ....+.|
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            34688999997   999999999854   23222     6666665444432             1  1    2378999


Q ss_pred             EeCCCcccccccchhhccCCcEEEEEEECCC----HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeE
Q psy18160         95 WDTAGQERYHTLAPMYYRNAQAAIIVYDITN----QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVI  170 (373)
Q Consensus        95 ~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~----~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi  170 (373)
                      |||+|+++|.......+..+|++|+|+|+++    +.+++.+..|    ..                     .  ...|+
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~---------------------l--~~~~i  138 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EI---------------------L--GIDKI  138 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HH---------------------T--TCCCE
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HH---------------------c--CCCeE
Confidence            9999999988777777888999999999985    4455544322    22                     1  22479


Q ss_pred             EEEEeCCCCCCCCc-ccCHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        171 ALAGNKADLPTSRR-CVEYSEGEAYAEE---NGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       171 ilVgnK~Dl~~~~~-~v~~~e~~~~~~~---~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ++|+||+|+.+..+ ....+++.++++.   .+++++++||++|.||+++++.|.+.+..
T Consensus       139 ivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          139 IIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             EEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             EEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            99999999976422 2345566777665   35789999999999999999999987753

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.68  E-value=1.4e-16  Score=153.74  Aligned_cols=154  Identities=13%  Similarity=0.028  Sum_probs=104.7

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcc---------cccccchhhccC
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQE---------RYHTLAPMYYRN  113 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e---------~~~~l~~~~~~~  113 (373)
                      .++++|.   |||||+|++++..+...   ....++....+.+++.  .+.+|||+|.-         .|.... ..++.
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~  257 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY  257 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence            4778886   99999999999876432   1122344567888874  57899999972         232222 24789


Q ss_pred             CcEEEEEEECCCHh--hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160        114 AQAAIIVYDITNQD--TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG  191 (373)
Q Consensus       114 ad~iilv~D~~~~~--Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~  191 (373)
                      +|++++|+|++++.  .++.+..|...+..                     ....+.|+++|+||+|+.+.......+.+
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~---------------------l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~  316 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQSSFEILRE---------------------IGVSGKPILVTLNKIDKINGDLYKKLDLV  316 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHHH---------------------HTCCSCCEEEEEECGGGCCSCHHHHHHHH
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHHHH---------------------hCcCCCCEEEEEECCCCCCchHHHHHHHH
Confidence            99999999999876  56666666555544                     23457899999999998653100111233


Q ss_pred             HHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        192 EAYAEEN---GLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       192 ~~~~~~~---~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ..+++.+   +.+++++||+++.|++++++.|.+.+..
T Consensus       317 ~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          317 EKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             HHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence            3445555   2468999999999999999999887653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.66  E-value=1e-15  Score=151.60  Aligned_cols=155  Identities=18%  Similarity=0.138  Sum_probs=105.4

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc----------
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA----------  107 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~----------  107 (373)
                      ...++++++|.   |||||+|++++..+...    +.+.+.....+.++|..  +.+|||+|+.++....          
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHH
Confidence            35689999997   99999999999875322    22234445667788864  6899999985433221          


Q ss_pred             --hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc
Q psy18160        108 --PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC  185 (373)
Q Consensus       108 --~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~  185 (373)
                        ..+++.+|++++|+|+++..++++. ++...+..                        .+.|+++|+||+|+.+. +.
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~------------------------~~~~~ilv~NK~Dl~~~-~~  309 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER------------------------RGRASVVVFNKWDLVVH-RE  309 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH------------------------TTCEEEEEEECGGGSTT-GG
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH------------------------cCCCEEEEEECccCCCc-hh
Confidence              2467889999999999987666542 23333333                        46899999999999764 33


Q ss_pred             cCHHHHHH-HHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        186 VEYSEGEA-YAEE----NGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       186 v~~~e~~~-~~~~----~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      ...++..+ +.+.    .+.+++++||++|.||+++|+.+.+.+...
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          310 KRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             GCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            44444332 2232    357899999999999999999998876543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.65  E-value=7.7e-16  Score=152.38  Aligned_cols=151  Identities=13%  Similarity=0.102  Sum_probs=101.0

Q ss_pred             CCCCCcEEEEEEcC---ChhHHHHHhhhCcC-------------------------------cCc---ceeeeEEEEEEE
Q psy18160         42 KRQSDCMAQIWLKD---RVDCMTQIVINVVF-------------------------------YPY---LFSAAFITQTVC   84 (373)
Q Consensus        42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~-------------------------------~~~---Tig~~~~~~~i~   84 (373)
                      .+....++++++|.   |||||+++|+...-                               ...   .++.+.....+.
T Consensus        12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~   91 (439)
T 3j2k_7           12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE   91 (439)
T ss_pred             CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence            34556789999997   99999999954311                               111   223333333444


Q ss_pred             ECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhh---HH---HHHHHHHHHHhhCCCCCCcccccchhHH
Q psy18160         85 LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT---FG---RAKSWVKELQRMAPPNIDTFGRAKSWVK  158 (373)
Q Consensus        85 ~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~S---f~---~i~~~l~~i~~~~~~~~~~~~~~~~~~~  158 (373)
                      .+  ...+.||||||+++|......+++.+|++|+|+|+++...   |+   ...+.+..+..                 
T Consensus        92 ~~--~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-----------------  152 (439)
T 3j2k_7           92 TE--KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-----------------  152 (439)
T ss_pred             cC--CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-----------------
Confidence            44  3578999999999999888889999999999999988532   21   11122222222                 


Q ss_pred             hhhhcCCCCCe-EEEEEeCCCCCCCC-----cccCHHHHHHHHHHcC------CeEEEEcCCCCCCHHHHHH
Q psy18160        159 ELQRMAPPNIV-IALAGNKADLPTSR-----RCVEYSEGEAYAEENG------LLFMETSAKTAMNVNEIFV  218 (373)
Q Consensus       159 ~~~~~~~~~~p-iilVgnK~Dl~~~~-----~~v~~~e~~~~~~~~~------~~~~evSak~~~gI~~lf~  218 (373)
                             .++| +++|+||+|+....     .....++...+++.++      ++++++||++|.|++++++
T Consensus       153 -------~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          153 -------AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             -------cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence                   2455 99999999985420     1112234455665555      4699999999999999654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.64  E-value=1.3e-16  Score=158.50  Aligned_cols=147  Identities=12%  Similarity=0.068  Sum_probs=98.4

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc--------hhhc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA--------PMYY  111 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~--------~~~~  111 (373)
                      .++++++|.   |||||+|+|++.++...    +.+.++....+.+++.  .+.+|||+|..++....        ..++
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            468999997   99999999998865432    3333444456667774  46899999986654433        3367


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160        112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG  191 (373)
Q Consensus       112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~  191 (373)
                      +.+|++++|+|++++.++.. ..|+..+                          ...|+++|+||+|+... +.+.  +.
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l--------------------------~~~piivV~NK~Dl~~~-~~~~--~~  351 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQV--------------------------KHRPLILVMNKIDLVEK-QLIT--SL  351 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHH--------------------------TTSCEEEEEECTTSSCG-GGST--TC
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhc--------------------------cCCcEEEEEECCCCCcc-hhhH--HH
Confidence            89999999999998776654 3344333                          23599999999999764 2222  11


Q ss_pred             HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      .++.  .+.+++++||++|.|++++|+.|.+.+...
T Consensus       352 ~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~  385 (462)
T 3geh_A          352 EYPE--NITQIVHTAAAQKQGIDSLETAILEIVQTG  385 (462)
T ss_dssp             CCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred             HHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            1111  356899999999999999999999887643

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.64  E-value=6.1e-16  Score=154.77  Aligned_cols=148  Identities=16%  Similarity=0.117  Sum_probs=107.5

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCc----C---cCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhh
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVV----F---YPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMY  110 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~----~---~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~  110 (373)
                      ..++++++|.   |||||+++|.+..    +   ...     |+...+  ..+.+++  ..+.+|||+|+++|......+
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~--~~~~~~~--~~i~iiDtPGh~~~~~~~~~~   93 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGF--SAFKLEN--YRITLVDAPGHADLIRAVVSA   93 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CC--CEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecce--EEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence            4688999997   9999999999876    2   222     333322  3445555  568999999999998888889


Q ss_pred             ccCCcEEEEEEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc-cc
Q psy18160        111 YRNAQAAIIVYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR-CV  186 (373)
Q Consensus       111 ~~~ad~iilv~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~-~v  186 (373)
                      ++.+|++++|+|+++   +.+++.+.    .+..                        .++|+++|+||+|+.+..+ ..
T Consensus        94 ~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~------------------------~~ip~IvviNK~Dl~~~~~~~~  145 (482)
T 1wb1_A           94 ADIIDLALIVVDAKEGPKTQTGEHML----ILDH------------------------FNIPIIVVITKSDNAGTEEIKR  145 (482)
T ss_dssp             TTSCCEEEEEEETTTCSCHHHHHHHH----HHHH------------------------TTCCBCEEEECTTSSCHHHHHH
T ss_pred             HhhCCEEEEEEecCCCccHHHHHHHH----HHHH------------------------cCCCEEEEEECCCcccchhHHH
Confidence            999999999999988   45554433    2222                        3578899999999975311 12


Q ss_pred             CHHHHHHHHHHc----CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        187 EYSEGEAYAEEN----GLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       187 ~~~e~~~~~~~~----~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ..+++.++++..    +.+++++||++|.||+++++.|.+.+.
T Consensus       146 ~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          146 TEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             HHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            234455666665    578999999999999999999988764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.64  E-value=4.1e-16  Score=146.84  Aligned_cols=152  Identities=17%  Similarity=0.093  Sum_probs=105.5

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceee--eEEEEEEEECCEEEEEEEEeCCCcc---------cccccchh
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSA--AFITQTVCLDDVTIRFEIWDTAGQE---------RYHTLAPM  109 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~e---------~~~~l~~~  109 (373)
                      ...+++++|.   |||||+|++++..+...  ..+.  +.....+..++  ..+.+|||+|++         .+......
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            3457888887   99999999999876533  1111  11112233333  568899999987         34455667


Q ss_pred             hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160        110 YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS  189 (373)
Q Consensus       110 ~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~  189 (373)
                      +++.+|++++|+|.++   +....+|+.....                       ..+.|+++|+||+|+... +....+
T Consensus        85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-----------------------~~~~P~ilvlNK~D~~~~-~~~~~~  137 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR-----------------------EGKAPVILAVNKVDNVQE-KADLLP  137 (301)
T ss_dssp             CCCCEEEEEEEEETTC---CCHHHHHHHHHHH-----------------------SSSSCEEEEEESTTTCCC-HHHHHH
T ss_pred             HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-----------------------hcCCCEEEEEECcccCcc-HHHHHH
Confidence            8899999999999976   3333334333222                       146899999999998652 222234


Q ss_pred             HHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        190 EGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       190 e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ...++++.+++ .++++||+++.|++++++.+...+..
T Consensus       138 ~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          138 HLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             HHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             HHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence            45556666676 79999999999999999999887753

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.64  E-value=2.2e-15  Score=147.95  Aligned_cols=155  Identities=16%  Similarity=0.138  Sum_probs=108.9

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhC---cCcCc-----ceeeeEEEEEEEEC---------------C----EEEEEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINV---VFYPY-----LFSAAFITQTVCLD---------------D----VTIRFEI   94 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~---~~~~~-----Tig~~~~~~~i~~~---------------~----~~v~l~i   94 (373)
                      ...++++++|.   |||||+++|++.   .+...     |+...+....+...               +    ....+.|
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            45678889997   999999999853   23222     66666654444221               1    1378999


Q ss_pred             EeCCCcccccccchhhccCCcEEEEEEECCC----HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeE
Q psy18160         95 WDTAGQERYHTLAPMYYRNAQAAIIVYDITN----QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVI  170 (373)
Q Consensus        95 ~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~----~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi  170 (373)
                      |||+|+++|.......+..+|++|+|+|+++    +.+++.+..|    ..                     .  ...|+
T Consensus        88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~---------------------~--~~~~i  140 (410)
T 1kk1_A           88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QI---------------------I--GQKNI  140 (410)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HH---------------------H--TCCCE
T ss_pred             EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HH---------------------c--CCCcE
Confidence            9999999988777777788999999999985    3455544322    22                     0  13479


Q ss_pred             EEEEeCCCCCCCCc-ccCHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        171 ALAGNKADLPTSRR-CVEYSEGEAYAEE---NGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       171 ilVgnK~Dl~~~~~-~v~~~e~~~~~~~---~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ++|+||+|+.+... ....+++.++++.   .+++++++||++|.||+++++.|.+.+..
T Consensus       141 ivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          141 IIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             EEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             EEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            99999999976311 1223445555554   35789999999999999999999987753

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.64  E-value=2.8e-16  Score=157.40  Aligned_cols=147  Identities=15%  Similarity=0.052  Sum_probs=96.3

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcC--cC-----------------------------c-ceeeeEEEEEEEECCEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVF--YP-----------------------------Y-LFSAAFITQTVCLDDVT   89 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~--~~-----------------------------~-Tig~~~~~~~i~~~~~~   89 (373)
                      ...++++++|.   |||||+++|+....  ..                             . ..|.++......++...
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            45689999998   99999999986511  10                             0 12333322333344445


Q ss_pred             EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHH------HHHHHHHHhhCCCCCCcccccchhHHhhhhc
Q psy18160         90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRA------KSWVKELQRMAPPNIDTFGRAKSWVKELQRM  163 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i------~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      +.+.||||+|+++|......+++.+|++|+|+|+++..++..+      .+.+..+..                      
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~----------------------  168 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS----------------------  168 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH----------------------
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH----------------------
Confidence            6799999999999999999999999999999999987654321      112222222                      


Q ss_pred             CCCCCeEEEEEeCCCCCCCCcccCHHHH----HHHHHHcC-----CeEEEEcCCCCCCHHH
Q psy18160        164 APPNIVIALAGNKADLPTSRRCVEYSEG----EAYAEENG-----LLFMETSAKTAMNVNE  215 (373)
Q Consensus       164 ~~~~~piilVgnK~Dl~~~~~~v~~~e~----~~~~~~~~-----~~~~evSak~~~gI~~  215 (373)
                       ....|++||+||+|+.+. +....++.    .++++..+     ++++++||++|.||++
T Consensus       169 -~~~~~iIvviNK~Dl~~~-~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          169 -LGIHNLIIAMNKMDNVDW-SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             -TTCCCEEEEEECGGGGTT-CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             -cCCCcEEEEEECcCcccc-hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence             123469999999999763 22333333    33444443     5799999999999975

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.63  E-value=1.1e-15  Score=140.46  Aligned_cols=159  Identities=14%  Similarity=0.089  Sum_probs=103.1

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCc-CcCc---c-eeeeEEEEEEEECCEEEEEEEEeCCCcccccccc--------
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVV-FYPY---L-FSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA--------  107 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~-~~~~---T-ig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~--------  107 (373)
                      ....++++++|.   |||||+++|++.. +...   + +..+.....+..++.  .+.||||||+..+....        
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR--EIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE--EEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC--EEEEEECcCCCCCCCCHHHHHHHHH
Confidence            445689999997   9999999999887 3322   2 334444455566664  58899999987654322        


Q ss_pred             ---hhhccCCcEEEEEEECCCHhhH-HHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC
Q psy18160        108 ---PMYYRNAQAAIIVYDITNQDTF-GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR  183 (373)
Q Consensus       108 ---~~~~~~ad~iilv~D~~~~~Sf-~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~  183 (373)
                         ..+++.+|++++|+|+++.... ..+.+|+..+..                     .....++++++.||+|+... 
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~i~vv~nK~Dl~~~-  154 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFG---------------------EDAMGHTIVLFTHKEDLNGG-  154 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHC---------------------GGGGGGEEEEEECGGGGTTC-
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhC---------------------chhhccEEEEEEcccccCCc-
Confidence               2367899999999999862222 223333333321                     01123345555559999743 


Q ss_pred             cccCH-------HHHHHHHHHcCCe---E--EEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        184 RCVEY-------SEGEAYAEENGLL---F--METSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       184 ~~v~~-------~e~~~~~~~~~~~---~--~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                       .+..       +++.++++..+..   +  +++||+++.|++++|+.|.+.+...
T Consensus       155 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          155 -SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             -CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence             1222       3355566666643   2  7899999999999999999887643

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.63  E-value=2.5e-16  Score=154.34  Aligned_cols=156  Identities=14%  Similarity=0.106  Sum_probs=110.7

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhC--------cCcCc----------ceeeeEEEEEEEECCEEEEEEEEeCCCcccc
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINV--------VFYPY----------LFSAAFITQTVCLDDVTIRFEIWDTAGQERY  103 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~--------~~~~~----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~  103 (373)
                      ...++++++|.   |||||+++|++.        .|...          +.|.++....+.++.....+.||||+|+++|
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            35688999997   999999999973        22210          2333322233444444467899999999999


Q ss_pred             cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCC
Q psy18160        104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTS  182 (373)
Q Consensus       104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~  182 (373)
                      ......+++.+|++|+|+|+++.... ...+|+..+..                        .++| +++|+||+|+...
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~------------------------~~ip~iivviNK~Dl~~~  143 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ------------------------VGVPYIVVFMNKVDMVDD  143 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH------------------------TTCCCEEEEEECGGGCCC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH------------------------cCCCEEEEEEECccccCc
Confidence            88888899999999999999886543 33455555544                        3567 8999999999742


Q ss_pred             Ccc--cCHHHHHHHHHHcC-----CeEEEEcCCCCCC------------------HHHHHHHHHHHcc
Q psy18160        183 RRC--VEYSEGEAYAEENG-----LLFMETSAKTAMN------------------VNEIFVEIAKKLP  225 (373)
Q Consensus       183 ~~~--v~~~e~~~~~~~~~-----~~~~evSak~~~g------------------I~~lf~~L~~~i~  225 (373)
                      ...  ...+++.++++.++     .+++++||++|.|                  ++++++.|...+.
T Consensus       144 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            111  11235666777766     5899999999987                  7888888877665

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.63  E-value=1.6e-16  Score=151.11  Aligned_cols=141  Identities=16%  Similarity=0.176  Sum_probs=108.1

Q ss_pred             HHhhhCcCcCc----------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECC-------
Q psy18160         62 QIVINVVFYPY----------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDIT-------  124 (373)
Q Consensus        62 ~rl~~~~~~~~----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~-------  124 (373)
                      .|+....|.+.          |+|...  ..+.++  .+.+++|||+||++++.+|..|+++++++|||||++       
T Consensus       127 ~Ri~~~~Y~PT~~Dil~~~~~TiGi~~--~~~~~~--~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~  202 (340)
T 4fid_A          127 KRIAMEDYVPTEEDLIHNRTKTTGIHE--YDFVVK--DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLY  202 (340)
T ss_dssp             HHHSSTTCCCCHHHHHHSCCCCCSCEE--EEEESS--SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC
T ss_pred             HHHhcccCCccccceeecccceeeeEE--EEEEee--eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccc
Confidence            44555566554          777654  344444  478999999999999999999999999999999998       


Q ss_pred             ---CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC--------------cccC
Q psy18160        125 ---NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR--------------RCVE  187 (373)
Q Consensus       125 ---~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~--------------~~v~  187 (373)
                         +..+|++...|+..+...                    ....++|++|+|||+|+....              ....
T Consensus       203 e~~~~nr~~es~~~~~~i~~~--------------------~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~  262 (340)
T 4fid_A          203 EDGNTSRLTESIAVFKDIMTN--------------------EFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDN  262 (340)
T ss_dssp             --CCSBHHHHHHHHHHHHHHC--------------------GGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTC
T ss_pred             cccccchHHHHHHHHHHHhhh--------------------hccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCC
Confidence               678899888888887651                    223678999999999985420              1124


Q ss_pred             HHHHHHHHHH-c--------------------------CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        188 YSEGEAYAEE-N--------------------------GLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       188 ~~e~~~~~~~-~--------------------------~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .+++.+++.. .                          .+.++++||++..||+.+|..+.+.+.+
T Consensus       263 ~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          263 AVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence            6666555432 2                          3668999999999999999999998876

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.62  E-value=8.3e-16  Score=134.18  Aligned_cols=116  Identities=15%  Similarity=0.138  Sum_probs=86.2

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccC----Cc
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRN----AQ  115 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~----ad  115 (373)
                      ...++++++|.   |||||+++|++..+...  +....     +..+...+.+.+|||+|++.+...+..+++.    +|
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  120 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL-----SAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK  120 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCc-----eeeeecCCeEEEEECCCCchHHHHHHHHHHhhcccCC
Confidence            45578999997   99999999999987653  11100     0111134568999999999998888888876    89


Q ss_pred             EEEEEEECC-CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160        116 AAIIVYDIT-NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       116 ~iilv~D~~-~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  182 (373)
                      ++++|||++ ++.+|..+..|+..+....                 ......++|+++|+||+|+...
T Consensus       121 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~p~ilv~nK~Dl~~~  171 (193)
T 2ged_A          121 GLIFMVDSTVDPKKLTTTAEFLVDILSIT-----------------ESSCENGIDILIACNKSELFTA  171 (193)
T ss_dssp             EEEEEEETTCCHHHHHHHHHHHHHHHHHH-----------------HHHSTTCCCEEEEEECTTSTTC
T ss_pred             EEEEEEECCCCchhHHHHHHHHHHHHhhh-----------------hhccccCCCEEEEEEchHhcCC
Confidence            999999999 8999999998887776510                 0002357899999999999765

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.62  E-value=1.9e-17  Score=166.77  Aligned_cols=152  Identities=14%  Similarity=0.067  Sum_probs=106.5

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .+++++|.   |||||+++|.+..+...   +++.++....+.+++ ...+.||||||++.|..++..+++.+|++++|+
T Consensus         5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVV   83 (537)
T 3izy_P            5 PVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILVV   83 (537)
T ss_dssp             CBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEEE
Confidence            57888887   99999999998776544   333333223333322 235889999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH---HHHc
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY---AEEN  198 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~---~~~~  198 (373)
                      |+++....+....| ..+..                        .++|++||+||+|+.+.......++..++   +..+
T Consensus        84 Da~dg~~~qt~e~l-~~~~~------------------------~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~  138 (537)
T 3izy_P           84 AADDGVMKQTVESI-QHAKD------------------------AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDY  138 (537)
T ss_dssp             BSSSCCCHHHHHHH-HHHHT------------------------TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCS
T ss_pred             ECCCCccHHHHHHH-HHHHH------------------------cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhc
Confidence            99986655444322 22222                        46799999999999753221111222211   1111


Q ss_pred             --CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        199 --GLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       199 --~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                        .++++++||++|.|++++|+.|...+.
T Consensus       139 ~~~~~iv~vSAktG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          139 GGDVQAVHVSALTGENMMALAEATIALAE  167 (537)
T ss_dssp             SSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred             CCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence              247999999999999999999987654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.62  E-value=9.2e-16  Score=154.79  Aligned_cols=110  Identities=13%  Similarity=0.023  Sum_probs=78.3

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhh------------------CcCcCc-----ceeeeE--EEEEEEECCEEEEEEEEeC
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVIN------------------VVFYPY-----LFSAAF--ITQTVCLDDVTIRFEIWDT   97 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~------------------~~~~~~-----Tig~~~--~~~~i~~~~~~v~l~i~Dt   97 (373)
                      ...+++++|.   |||||+++|+.                  ..+...     ..|.+.  ....+.+++  +.+.||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence            4567888886   99999999961                  111110     111111  122334444  67899999


Q ss_pred             CCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCC
Q psy18160         98 AGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKA  177 (373)
Q Consensus        98 ~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~  177 (373)
                      ||+++|...+..+++.+|++|+|+|+++..+.....-| ..+..                        .++|+++|+||+
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~------------------------~~iPiivviNK~  144 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL------------------------RHTPIMTFINKM  144 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT------------------------TTCCEEEEEECT
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH------------------------cCCCEEEEEeCC
Confidence            99999999999999999999999999987776665544 33333                        468999999999


Q ss_pred             CCCCC
Q psy18160        178 DLPTS  182 (373)
Q Consensus       178 Dl~~~  182 (373)
                      |+...
T Consensus       145 Dl~~~  149 (528)
T 3tr5_A          145 DRDTR  149 (528)
T ss_dssp             TSCCS
T ss_pred             CCccc
Confidence            99653

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.61  E-value=9.1e-16  Score=149.99  Aligned_cols=154  Identities=13%  Similarity=0.073  Sum_probs=107.6

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhC-------cCcC---------c-ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINV-------VFYP---------Y-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL  106 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~-------~~~~---------~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l  106 (373)
                      .++++++|.   |||||+++|++.       .|..         . ..|.+.....+.++.....+.||||+|+++|...
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~   82 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence            478999997   999999999974       1211         0 1222222223334434467889999999999888


Q ss_pred             chhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCCCcc
Q psy18160        107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTSRRC  185 (373)
Q Consensus       107 ~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~~~~  185 (373)
                      ...+++.+|++|+|+|+++....+..+ ++..+..                        .++| +++|+||+|+.+....
T Consensus        83 ~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~------------------------~~vp~iivviNK~Dl~~~~~~  137 (397)
T 1d2e_A           83 MITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQ------------------------IGVEHVVVYVNKADAVQDSEM  137 (397)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHH------------------------TTCCCEEEEEECGGGCSCHHH
T ss_pred             HHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHH------------------------cCCCeEEEEEECcccCCCHHH
Confidence            888899999999999999854333322 2233333                        3567 7899999999753111


Q ss_pred             --cCHHHHHHHHHHcC-----CeEEEEcCCCCCC----------HHHHHHHHHHHcc
Q psy18160        186 --VEYSEGEAYAEENG-----LLFMETSAKTAMN----------VNEIFVEIAKKLP  225 (373)
Q Consensus       186 --v~~~e~~~~~~~~~-----~~~~evSak~~~g----------I~~lf~~L~~~i~  225 (373)
                        ...+++.++++.++     ++++++||++|.|          ++++++.|.+.+.
T Consensus       138 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          138 VELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence              12345667777776     5899999999765          8999999988775

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.61  E-value=4.6e-15  Score=134.66  Aligned_cols=162  Identities=7%  Similarity=0.059  Sum_probs=104.9

Q ss_pred             CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCc-----------c
Q psy18160         41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQ-----------E  101 (373)
Q Consensus        41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~-----------e  101 (373)
                      +.+....++++++|.   |||||+|+|++..+...     +++.++....+.+++.  .+.||||||.           +
T Consensus        23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~  100 (239)
T 3lxx_A           23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSK  100 (239)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHH
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHH
Confidence            334556789999997   99999999999887554     2333444556666664  5789999994           3


Q ss_pred             cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160        102 RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT  181 (373)
Q Consensus       102 ~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  181 (373)
                      ++......+++++|++|+|+|+++....  ...|+..+...                 .  ......|++||+||+|+..
T Consensus       101 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~-----------------~--~~~~~~~~iiv~nK~D~~~  159 (239)
T 3lxx_A          101 EIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKM-----------------F--GERARSFMILIFTRKDDLG  159 (239)
T ss_dssp             HHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHH-----------------H--HHHHGGGEEEEEECGGGC-
T ss_pred             HHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHH-----------------h--hhhccceEEEEEeCCccCC
Confidence            4444555567789999999998754331  12233333220                 0  0012358999999999865


Q ss_pred             CCcccC------HHHHHHHHHHcCCeEEEEcCCCC-----CCHHHHHHHHHHHcch
Q psy18160        182 SRRCVE------YSEGEAYAEENGLLFMETSAKTA-----MNVNEIFVEIAKKLPK  226 (373)
Q Consensus       182 ~~~~v~------~~e~~~~~~~~~~~~~evSak~~-----~gI~~lf~~L~~~i~~  226 (373)
                      . +.+.      .+.++++++..+..|+.+++..+     .++.++|..+...+.+
T Consensus       160 ~-~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          160 D-TNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             ------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-ccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            4 2222      24577888888888888887744     6899999988777654

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.61  E-value=1.6e-16  Score=153.46  Aligned_cols=153  Identities=15%  Similarity=0.139  Sum_probs=90.0

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCc-CcCc-----------ceeeeEEEEEEEECCEEEEEEEEeCCCc-------cccc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVV-FYPY-----------LFSAAFITQTVCLDDVTIRFEIWDTAGQ-------ERYH  104 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~-~~~~-----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~-------e~~~  104 (373)
                      .++++++|.   |||||++++++.. +...           |++.++....+..++..+.+.+|||+|+       +.+.
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~  116 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK  116 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence            367888887   9999999976543 3211           4555554444555677789999999999       7888


Q ss_pred             ccch-------hhccCCcEE-----------EEEEECCC-HhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcC
Q psy18160        105 TLAP-------MYYRNAQAA-----------IIVYDITN-QDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMA  164 (373)
Q Consensus       105 ~l~~-------~~~~~ad~i-----------ilv~D~~~-~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  164 (373)
                      .++.       .|+++++++           +++|++++ ..++..+. .|+..+                         
T Consensus       117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-------------------------  171 (361)
T 2qag_A          117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-------------------------  171 (361)
T ss_dssp             CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-------------------------
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-------------------------
Confidence            8876       777766554           37777765 45555554 333322                         


Q ss_pred             CCCCeEEEEEeCCCCCCCCcccCH--HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        165 PPNIVIALAGNKADLPTSRRCVEY--SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       165 ~~~~piilVgnK~Dl~~~~~~v~~--~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ..++|+++|+||+|+... +.+..  +++.++++.++++++++||+++.+ ++.|..+.+.+.+
T Consensus       172 ~~~~piIlV~NK~Dl~~~-~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~  233 (361)
T 2qag_A          172 HNKVNIVPVIAKADTLTL-KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA  233 (361)
T ss_dssp             CS-SCEEEEEECCSSSCH-HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred             ccCCCEEEEEECCCCCCH-HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence            257899999999999764 33333  466777777889999999999999 8888888877754

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.60  E-value=2.9e-15  Score=148.12  Aligned_cols=151  Identities=16%  Similarity=0.051  Sum_probs=100.7

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCcC---cC------------cce-------------------eeeEEEEEEEE
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVVF---YP------------YLF-------------------SAAFITQTVCL   85 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~---~~------------~Ti-------------------g~~~~~~~i~~   85 (373)
                      .....++++++|.   |||||+++|++..-   ..            .|.                   |.+.......+
T Consensus        20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~   99 (434)
T 1zun_B           20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   99 (434)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence            3445688999997   99999999986541   10            011                   11111111122


Q ss_pred             CCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCC
Q psy18160         86 DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP  165 (373)
Q Consensus        86 ~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (373)
                      ......+.||||+|+++|......+++.+|++|+|+|+++.... ...+++..+..                     .  
T Consensus       100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~---------------------~--  155 (434)
T 1zun_B          100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASL---------------------L--  155 (434)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHH---------------------T--
T ss_pred             ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---------------------c--
Confidence            22345689999999999988888889999999999999886432 23334444433                     1  


Q ss_pred             CCCeEEEEEeCCCCCCCCcc---cCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHH
Q psy18160        166 PNIVIALAGNKADLPTSRRC---VEYSEGEAYAEENG-----LLFMETSAKTAMNVNEIF  217 (373)
Q Consensus       166 ~~~piilVgnK~Dl~~~~~~---v~~~e~~~~~~~~~-----~~~~evSak~~~gI~~lf  217 (373)
                      ...|+++|+||+|+.+....   ...++..++++.++     ++++++||++|.||+++|
T Consensus       156 ~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~  215 (434)
T 1zun_B          156 GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS  215 (434)
T ss_dssp             TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred             CCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence            12369999999999753111   12345666777777     679999999999999853

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.59  E-value=4.4e-16  Score=153.99  Aligned_cols=157  Identities=13%  Similarity=0.060  Sum_probs=103.4

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhC--cCcCc------------------------------ceeeeEEEEEEEECCEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINV--VFYPY------------------------------LFSAAFITQTVCLDDVT   89 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~--~~~~~------------------------------Tig~~~~~~~i~~~~~~   89 (373)
                      ...++++++|.   |||||+++|+..  .+...                              ..|.+.......++...
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            34688999997   999999999864  22210                              01111111122233344


Q ss_pred             EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160         90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV  169 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (373)
                      ..+.||||+|+++|......+++.+|++|+|+|+++ .+|+.+..|..+..++           ..+..     ...-.|
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~-----------~~~~~-----~~~~~~  146 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREH-----------IILAK-----TMGLDQ  146 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHH-----------HHHHH-----HTTCTT
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHH-----------HHHHH-----HcCCCe
Confidence            679999999999999888899999999999999998 7888665544333321           00000     012236


Q ss_pred             EEEEEeCCCCCCCC-c----ccCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHH
Q psy18160        170 IALAGNKADLPTSR-R----CVEYSEGEAYAEENG-----LLFMETSAKTAMNVNEIFV  218 (373)
Q Consensus       170 iilVgnK~Dl~~~~-~----~v~~~e~~~~~~~~~-----~~~~evSak~~~gI~~lf~  218 (373)
                      +++|+||+|+.+.. +    ....+++.++++.++     ++++++||++|.|+.+++.
T Consensus       147 iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          147 LIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             CEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             EEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            89999999997521 1    122455677777776     6799999999999986543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.58  E-value=1.9e-15  Score=140.28  Aligned_cols=155  Identities=14%  Similarity=0.103  Sum_probs=90.6

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcC----------c-ceeeeEEEEEEEECCEEEEEEEEeCCCccc-------cc
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYP----------Y-LFSAAFITQTVCLDDVTIRFEIWDTAGQER-------YH  104 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~----------~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~-------~~  104 (373)
                      ..++++++|.   |||||+|++++.....          . |++.++....+..++..+.+.+|||+|...       +.
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            4578999997   9999999977654322          2 666677666666667678999999999732       22


Q ss_pred             ccc-------hhhcc-------------CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcC
Q psy18160        105 TLA-------PMYYR-------------NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMA  164 (373)
Q Consensus       105 ~l~-------~~~~~-------------~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  164 (373)
                      .+.       ..|++             .+|+++++++.+...-...-..++..+.                        
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~------------------------  142 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH------------------------  142 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT------------------------
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh------------------------
Confidence            232       33333             2789999997765221111122333321                        


Q ss_pred             CCCCeEEEEEeCCCCCCCCc-ccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        165 PPNIVIALAGNKADLPTSRR-CVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       165 ~~~~piilVgnK~Dl~~~~~-~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                       ..+|+++|+||+|+..... ....+.+.+.....+++++++||++++|+++++++|.+.+.
T Consensus       143 -~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          143 -EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             -TTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred             -ccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence             1789999999999864311 01112345556677899999999999999999999987664

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.58  E-value=6e-15  Score=150.64  Aligned_cols=151  Identities=19%  Similarity=0.120  Sum_probs=103.4

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc-------ceeeeEEEEEE------------EECCEEEEEEEEeCCCccccc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY-------LFSAAFITQTV------------CLDDVTIRFEIWDTAGQERYH  104 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~-------Tig~~~~~~~i------------~~~~~~v~l~i~Dt~G~e~~~  104 (373)
                      ..+++++|.   |||||+++|.+..+...       ++|..+.....            .++.....+.||||||++.|.
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~   84 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT   84 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence            357888887   99999999998765432       34433321100            000011248999999999999


Q ss_pred             ccchhhccCCcEEEEEEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160        105 TLAPMYYRNAQAAIIVYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT  181 (373)
Q Consensus       105 ~l~~~~~~~ad~iilv~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  181 (373)
                      .++..+++.+|++|+|+|+++   +.+++.+..    +..                        .++|+++|+||+|+..
T Consensus        85 ~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~------------------------~~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           85 TLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM------------------------YRTPFVVAANKIDRIH  136 (594)
T ss_dssp             TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH------------------------TTCCEEEEEECGGGST
T ss_pred             HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH------------------------cCCeEEEEeccccccc
Confidence            999999999999999999999   667665442    222                        4689999999999964


Q ss_pred             CCccc-----------CHH-----------HHHHHHHHcC---------------CeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        182 SRRCV-----------EYS-----------EGEAYAEENG---------------LLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       182 ~~~~v-----------~~~-----------e~~~~~~~~~---------------~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      .....           ..+           +........+               .+++++||++|.||++++++|...+
T Consensus       137 ~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~  216 (594)
T 1g7s_A          137 GWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA  216 (594)
T ss_dssp             TCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence            21100           000           1111122222               3799999999999999999998766


Q ss_pred             c
Q psy18160        225 P  225 (373)
Q Consensus       225 ~  225 (373)
                      .
T Consensus       217 ~  217 (594)
T 1g7s_A          217 Q  217 (594)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.57  E-value=2.9e-15  Score=144.94  Aligned_cols=143  Identities=7%  Similarity=-0.049  Sum_probs=102.8

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCcceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCC
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN  125 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~  125 (373)
                      +++++|.   |||||+++|+....   |++..+.  .+..++  ..+.||||||+++|.......++.+|++|+|+| + 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~gi---Ti~~~~~--~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-   93 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKKGT---SSDITMY--NNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-   93 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEEEE---ESSSEEE--EECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCE---EEEeeEE--EEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-
Confidence            7888887   99999999991110   5554442  333333  468999999999998777778899999999999 4 


Q ss_pred             HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeE-EEEEe-CCCCCCCCcccCH--HHHHHHHHHcC--
Q psy18160        126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVI-ALAGN-KADLPTSRRCVEY--SEGEAYAEENG--  199 (373)
Q Consensus       126 ~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilVgn-K~Dl~~~~~~v~~--~e~~~~~~~~~--  199 (373)
                      ...+....+++..+..                        .++|. ++++| |+|+ +. +.+..  +++.++++..+  
T Consensus        94 ~g~~~qt~e~~~~~~~------------------------~~i~~~ivvvNNK~Dl-~~-~~~~~~~~~i~~~l~~~~~~  147 (370)
T 2elf_A           94 QGLDAHTGECIIALDL------------------------LGFKHGIIALTRSDST-HM-HAIDELKAKLKVITSGTVLQ  147 (370)
T ss_dssp             TCCCHHHHHHHHHHHH------------------------TTCCEEEEEECCGGGS-CH-HHHHHHHHHHHHHTTTSTTT
T ss_pred             CCCcHHHHHHHHHHHH------------------------cCCCeEEEEEEeccCC-CH-HHHHHHHHHHHHHHHhcCCC
Confidence            3445555566655544                        24565 88899 9999 43 22222  44555555443  


Q ss_pred             -CeEEE--EcCCC---CCCHHHHHHHHHHHcch
Q psy18160        200 -LLFME--TSAKT---AMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       200 -~~~~e--vSak~---~~gI~~lf~~L~~~i~~  226 (373)
                       +++++  +||++   +.|++++++.|.+.+..
T Consensus       148 ~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          148 DWECISLNTNKSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             TCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             ceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence             68999  99999   99999999999887653

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.57  E-value=3.3e-16  Score=156.19  Aligned_cols=149  Identities=15%  Similarity=0.138  Sum_probs=89.0

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhh--CcCcC--------------------------------c--ceeeeEEEEEEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVIN--VVFYP--------------------------------Y--LFSAAFITQTVC   84 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~--~~~~~--------------------------------~--Tig~~~~~~~i~   84 (373)
                      ....++++++|.   |||||+++|+.  +.+..                                .  |++..+  ..+.
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~--~~~~  117 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR--AYFE  117 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C--CEEE
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee--EEEe
Confidence            456789999997   99999999974  22210                                0  332221  2333


Q ss_pred             ECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCH---hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhh
Q psy18160         85 LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ---DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQ  161 (373)
Q Consensus        85 ~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~---~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                      .++  ..+.||||+|+++|......+++.+|++|+|+|+++.   .+|+...+|.+.+..                    
T Consensus       118 ~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~--------------------  175 (467)
T 1r5b_A          118 TEH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL--------------------  175 (467)
T ss_dssp             CSS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHH--------------------
T ss_pred             cCC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHH--------------------
Confidence            444  5689999999999998888889999999999999986   344432233322222                    


Q ss_pred             hcCCCCCe-EEEEEeCCCCCCCC--c---ccCHHHHHHHHHHc-C------CeEEEEcCCCCCCHHHHH
Q psy18160        162 RMAPPNIV-IALAGNKADLPTSR--R---CVEYSEGEAYAEEN-G------LLFMETSAKTAMNVNEIF  217 (373)
Q Consensus       162 ~~~~~~~p-iilVgnK~Dl~~~~--~---~v~~~e~~~~~~~~-~------~~~~evSak~~~gI~~lf  217 (373)
                       ....++| ++||+||+|+....  .   ....++..++++.. +      ++++++||++|.|++++|
T Consensus       176 -~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          176 -ARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             -HHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             -HHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence             0113566 99999999996421  0   11233566677666 3      569999999999998765

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.55  E-value=5.9e-15  Score=157.77  Aligned_cols=157  Identities=15%  Similarity=0.058  Sum_probs=108.9

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCc-------Cc---------Cc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccc
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVV-------FY---------PY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERY  103 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~-------~~---------~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~  103 (373)
                      ....++++++|.   |||||+++|++..       +.         .. +.|.++....+.++.....+.||||||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            345688999997   9999999998741       10         01 3444333333445445567899999999999


Q ss_pred             cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCC
Q psy18160        104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTS  182 (373)
Q Consensus       104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~  182 (373)
                      ......+++.+|++|+|+|+++....+ ..+++..+..                        .++| ++||+||+|+.+.
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~------------------------lgIP~IIVVINKiDLv~d  427 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ------------------------VGVPYIIVFLNKCDMVDD  427 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH------------------------HTCSCEEEEEECCTTCCC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH------------------------cCCCeEEEEEeecccccc
Confidence            888888999999999999999864332 2334444433                        2567 8999999999753


Q ss_pred             Ccc--cCHHHHHHHHHHcC-----CeEEEEcCCCC--------CCHHHHHHHHHHHcc
Q psy18160        183 RRC--VEYSEGEAYAEENG-----LLFMETSAKTA--------MNVNEIFVEIAKKLP  225 (373)
Q Consensus       183 ~~~--v~~~e~~~~~~~~~-----~~~~evSak~~--------~gI~~lf~~L~~~i~  225 (373)
                      ...  ...+++.++++.++     ++++++||++|        .||+++++.|...+.
T Consensus       428 ~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          428 EELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             hhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            111  12345667777776     58999999999        468999999887665

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.54  E-value=2e-16  Score=158.10  Aligned_cols=147  Identities=14%  Similarity=0.159  Sum_probs=100.2

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..+++++|.   |||||+++|.+..+...   ++..+.....+..++  ..+.||||||++.|..++..+++.+|++++|
T Consensus         4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV   81 (501)
T 1zo1_I            4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVLV   81 (501)
T ss_dssp             CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence            357888887   99999999998765543   111111112233344  3578999999999999999999999999999


Q ss_pred             EECCCH---hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-cccCHH--HHHHH
Q psy18160        121 YDITNQ---DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-RCVEYS--EGEAY  194 (373)
Q Consensus       121 ~D~~~~---~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-~~v~~~--e~~~~  194 (373)
                      +|+++.   .+.+.+    ..+..                        .++|+++++||+|+.... ..+..+  +...+
T Consensus        82 Vda~~g~~~qT~e~l----~~~~~------------------------~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~  133 (501)
T 1zo1_I           82 VAADDGVMPQTIEAI----QHAKA------------------------AQVPVVVAVNKIDKPEADPDRVKNELSQYGIL  133 (501)
T ss_dssp             EETTTBSCTTTHHHH----HHHHH------------------------TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCC
T ss_pred             eecccCccHHHHHHH----HHHHh------------------------cCceEEEEEEeccccccCHHHHHHHHHHhhhh
Confidence            999883   344332    22222                        467899999999996531 111100  00011


Q ss_pred             HHHcC--CeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        195 AEENG--LLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       195 ~~~~~--~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                      +..++  ++++++||++|.||+++|+.|...
T Consensus       134 ~~~~~~~~~~v~vSAktG~gI~eLle~I~~~  164 (501)
T 1zo1_I          134 PEEWGGESQFVHVSAKAGTGIDELLDAILLQ  164 (501)
T ss_dssp             TTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred             HHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence            22223  689999999999999999998643

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.54  E-value=1.2e-15  Score=151.76  Aligned_cols=143  Identities=13%  Similarity=0.053  Sum_probs=98.2

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhC--cCcC--------------------------------c--ceeeeEEEEEEEEC
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINV--VFYP--------------------------------Y--LFSAAFITQTVCLD   86 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~--~~~~--------------------------------~--Tig~~~~~~~i~~~   86 (373)
                      ..++++++|.   |||||+++|++.  .+..                                .  |+...+  ..+.. 
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~--~~~~~-   82 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL--WKFET-   82 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC--EEEEC-
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE--EEEec-
Confidence            4688999997   999999999864  1210                                0  333332  22333 


Q ss_pred             CEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHh---hHH---HHHHHHHHHHhhCCCCCCcccccchhHHhh
Q psy18160         87 DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD---TFG---RAKSWVKELQRMAPPNIDTFGRAKSWVKEL  160 (373)
Q Consensus        87 ~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~---Sf~---~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~  160 (373)
                       ....+.||||||+++|......+++.+|++|+|+|+++..   +|+   ...+++..+..                   
T Consensus        83 -~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-------------------  142 (458)
T 1f60_A           83 -PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-------------------  142 (458)
T ss_dssp             -SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-------------------
T ss_pred             -CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-------------------
Confidence             3457999999999999988888999999999999998753   332   22222222222                   


Q ss_pred             hhcCCCCC-eEEEEEeCCCCCCCCc---ccCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHH
Q psy18160        161 QRMAPPNI-VIALAGNKADLPTSRR---CVEYSEGEAYAEENG-----LLFMETSAKTAMNVNEI  216 (373)
Q Consensus       161 ~~~~~~~~-piilVgnK~Dl~~~~~---~v~~~e~~~~~~~~~-----~~~~evSak~~~gI~~l  216 (373)
                           .++ +++||+||+|+.+...   ....+++.++++.++     ++++++||++|.|+.++
T Consensus       143 -----~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          143 -----LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             -----TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             -----cCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence                 244 4999999999963211   112345666667666     58999999999999754

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.54  E-value=3.4e-15  Score=153.25  Aligned_cols=149  Identities=16%  Similarity=0.098  Sum_probs=97.6

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--------------------------------ceeeeEEEEEEEECCE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY--------------------------------LFSAAFITQTVCLDDV   88 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--------------------------------Tig~~~~~~~i~~~~~   88 (373)
                      ....++++++|.   |||||+++|++......                                ..|.++......+...
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            445789999997   99999999986532110                                1222221222223233


Q ss_pred             EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHh---hHH---HHHHHHHHHHhhCCCCCCcccccchhHHhhhh
Q psy18160         89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD---TFG---RAKSWVKELQRMAPPNIDTFGRAKSWVKELQR  162 (373)
Q Consensus        89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~---Sf~---~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      ...+.||||||+++|......+++.+|++|+|+|+++..   +|.   ...+.+..+..                     
T Consensus       244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~---------------------  302 (611)
T 3izq_1          244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---------------------  302 (611)
T ss_dssp             SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT---------------------
T ss_pred             CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH---------------------
Confidence            467899999999999998889999999999999998742   110   11111111111                     


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCcccCH----HHHHHHHHHcC-----CeEEEEcCCCCCCHHHH
Q psy18160        163 MAPPNIVIALAGNKADLPTSRRCVEY----SEGEAYAEENG-----LLFMETSAKTAMNVNEI  216 (373)
Q Consensus       163 ~~~~~~piilVgnK~Dl~~~~~~v~~----~e~~~~~~~~~-----~~~~evSak~~~gI~~l  216 (373)
                        ....|++||+||+|+.+. +....    +++..++...+     ++++++||++|.||+++
T Consensus       303 --lgi~~iIVVvNKiDl~~~-~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          303 --LGIHNLIIAMNKMDNVDW-SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             --TTCCEEEEEEECTTTTTT-CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             --cCCCeEEEEEecccccch-hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence              123469999999999763 22222    23444555544     58999999999999876

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.52  E-value=2.2e-15  Score=141.06  Aligned_cols=110  Identities=15%  Similarity=0.068  Sum_probs=74.8

Q ss_pred             EEEEEEeCCCcc-------------cccccchhhccCCcEEE-EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccch
Q psy18160         90 IRFEIWDTAGQE-------------RYHTLAPMYYRNAQAAI-IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKS  155 (373)
Q Consensus        90 v~l~i~Dt~G~e-------------~~~~l~~~~~~~ad~ii-lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~  155 (373)
                      ..+.||||||..             .+..+...|++.+++++ +|+|+++..+..+...|+..+..              
T Consensus       125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~--------------  190 (299)
T 2aka_B          125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--------------  190 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT--------------
T ss_pred             CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC--------------
Confidence            568999999964             34556778888888777 69999876554444344444322              


Q ss_pred             hHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH--cC-CeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        156 WVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE--NG-LLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       156 ~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~--~~-~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                                .+.|+++|+||+|+.+. +....+........  .+ .+++++||+++.|++++|+.|.+..
T Consensus       191 ----------~~~~~i~V~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          191 ----------QGQRTIGVITKLDLMDE-GTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             ----------TCSSEEEEEECGGGSCT-TCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             ----------CCCeEEEEEEccccCCC-CchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence                      46899999999999764 22222222110001  12 3678999999999999999988743

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.51  E-value=4.8e-14  Score=146.24  Aligned_cols=110  Identities=13%  Similarity=-0.021  Sum_probs=77.8

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc-------------------ceeeeEEEEEEEECCEEEEEEEEeCCCcccc
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY-------------------LFSAAFITQTVCLDDVTIRFEIWDTAGQERY  103 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~-------------------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~  103 (373)
                      ...+++++|.   |||||+++|++......                   ..+.++..+...+....+.++||||+|+++|
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f   87 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF   87 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence            4467888886   99999999994332200                   1122332333333334578999999999999


Q ss_pred             cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCC
Q psy18160        104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP  180 (373)
Q Consensus       104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~  180 (373)
                      ......+++.+|++++|+|+++....... +++..+..                        .++|+++|+||+|+.
T Consensus        88 ~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~------------------------~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           88 VGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER------------------------LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH------------------------TTCCEEEEEECGGGC
T ss_pred             HHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH------------------------ccCCEEEEecCCchh
Confidence            98899999999999999999876543332 34444433                        368999999999986

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.50  E-value=4.4e-14  Score=124.91  Aligned_cols=151  Identities=12%  Similarity=0.064  Sum_probs=97.7

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCccc----------ccccch
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQER----------YHTLAP  108 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~----------~~~l~~  108 (373)
                      ....+++++|.   |||||++++++..+...   +.|..+....+.+++   .+.+|||+|...          +.....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            34568999997   99999999998874322   555544334444444   467999999742          222233


Q ss_pred             hhc---cCCcEEEEEEECCCHhhHHH--HHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC
Q psy18160        109 MYY---RNAQAAIIVYDITNQDTFGR--AKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR  183 (373)
Q Consensus       109 ~~~---~~ad~iilv~D~~~~~Sf~~--i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~  183 (373)
                      .++   +.++++++++|++++.++..  +.+|+   ..                        .+.|+++|+||+|+....
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~------------------------~~~~~~~v~nK~D~~s~~  153 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD------------------------SNIAVLVLLTKADKLASG  153 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH------------------------TTCCEEEEEECGGGSCHH
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH------------------------cCCCeEEEEecccCCCch
Confidence            344   57899999999988765432  22232   22                        357899999999986531


Q ss_pred             -cccCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        184 -RCVEYSEGEAYAEENG--LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       184 -~~v~~~e~~~~~~~~~--~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                       ++...+.+.+++...+  +.++++||+++.|++++++.|.+.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          154 ARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             HHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence             1122345556665554  57899999999999999999987654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.50  E-value=5.9e-15  Score=151.03  Aligned_cols=164  Identities=15%  Similarity=0.147  Sum_probs=89.0

Q ss_pred             cccCCCCCCcEEEEEEcC---ChhHHHHHhhhCc-------------------------------CcCc-ceeeeEEEEE
Q psy18160         38 MMSGKRQSDCMAQIWLKD---RVDCMTQIVINVV-------------------------------FYPY-LFSAAFITQT   82 (373)
Q Consensus        38 ~~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~-------------------------------~~~~-Tig~~~~~~~   82 (373)
                      .+........++++++|.   |||||+++|+...                               +... ..|.+.....
T Consensus       168 ~~~~~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~  247 (592)
T 3mca_A          168 IFEQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVAS  247 (592)
T ss_dssp             GGGGSCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------
T ss_pred             HhhhccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeE
Confidence            344455667889999997   9999999996421                               0000 1122222222


Q ss_pred             EEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHh---hH---HHHHHHHHHHHhhCCCCCCcccccchh
Q psy18160         83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD---TF---GRAKSWVKELQRMAPPNIDTFGRAKSW  156 (373)
Q Consensus        83 i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~---Sf---~~i~~~l~~i~~~~~~~~~~~~~~~~~  156 (373)
                      ..+......+.||||+|+++|......+++.+|++|+|+|+++..   .+   ....+.+..+..               
T Consensus       248 ~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---------------  312 (592)
T 3mca_A          248 TTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---------------  312 (592)
T ss_dssp             -----------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---------------
T ss_pred             EEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---------------
Confidence            223333467899999999999998888999999999999998532   11   001111122222               


Q ss_pred             HHhhhhcCCCCCe-EEEEEeCCCCCCCCcc---cCHHHHHHHH-HHcCC-----eEEEEcCCCCCCHH------------
Q psy18160        157 VKELQRMAPPNIV-IALAGNKADLPTSRRC---VEYSEGEAYA-EENGL-----LFMETSAKTAMNVN------------  214 (373)
Q Consensus       157 ~~~~~~~~~~~~p-iilVgnK~Dl~~~~~~---v~~~e~~~~~-~~~~~-----~~~evSak~~~gI~------------  214 (373)
                               .++| +|||+||+|+.+....   ...++...++ +..++     +++++||++|.||.            
T Consensus       313 ---------lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~  383 (592)
T 3mca_A          313 ---------LGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK  383 (592)
T ss_dssp             ---------SSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCC
T ss_pred             ---------cCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccc
Confidence                     2444 9999999998652111   1122334444 44454     79999999999998            


Q ss_pred             --HHHHHHHHHcc
Q psy18160        215 --EIFVEIAKKLP  225 (373)
Q Consensus       215 --~lf~~L~~~i~  225 (373)
                        .|++.|...+.
T Consensus       384 g~~Lle~l~~~~p  396 (592)
T 3mca_A          384 GPTLLSALDQLVP  396 (592)
T ss_dssp             SCCHHHHHHTSCC
T ss_pred             hHHHHHHHHhhcc
Confidence              67777765443

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.45  E-value=1.7e-13  Score=126.32  Aligned_cols=113  Identities=11%  Similarity=0.031  Sum_probs=80.3

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ce--eeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhcc------
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LF--SAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYR------  112 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Ti--g~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~------  112 (373)
                      ..++++++|.   |||||+++|++..+...  ..  ........+..++.  .+.||||||++++..+...+++      
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            4589999997   99999999999886433  11  22233344555654  6899999999988877666654      


Q ss_pred             ---CCcEEEEEEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCC--CCeEEEEEeCCCCCCC
Q psy18160        113 ---NAQAAIIVYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP--NIVIALAGNKADLPTS  182 (373)
Q Consensus       113 ---~ad~iilv~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~piilVgnK~Dl~~~  182 (373)
                         ++|++++|+|++... +... ..|+..+...                     ...  ..|+++|+||+|+...
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~---------------------~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQT---------------------FGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHH---------------------HCGGGGGGEEEEEECTTCCCS
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHH---------------------hchhhhcCEEEEEeCcccCCC
Confidence               889999999997654 4333 3566666551                     112  2489999999998643

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.43  E-value=5.7e-13  Score=134.48  Aligned_cols=112  Identities=12%  Similarity=0.026  Sum_probs=73.7

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCc--Cc----------------C----c-ceeeeEEEEEEEECCEEEEEEEEeCCC
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVV--FY----------------P----Y-LFSAAFITQTVCLDDVTIRFEIWDTAG   99 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~--~~----------------~----~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G   99 (373)
                      ...+++++|.   |||||+++|+...  +.                .    . +.|.++....+.++...+.+.||||+|
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            4578888887   9999999999631  10                0    0 122221111122222336789999999


Q ss_pred             cccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160        100 QERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL  179 (373)
Q Consensus       100 ~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl  179 (373)
                      +++|......+++.+|++|+|+|+++...... ..++..+.                        ..++|+++|+||+|+
T Consensus        92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~------------------------~~~ipiivviNK~Dl  146 (529)
T 2h5e_A           92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR------------------------LRDTPILTFMNKLDR  146 (529)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT------------------------TTTCCEEEEEECTTS
T ss_pred             ChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH------------------------HcCCCEEEEEcCcCC
Confidence            99999888899999999999999987543221 22222222                        247899999999998


Q ss_pred             CCC
Q psy18160        180 PTS  182 (373)
Q Consensus       180 ~~~  182 (373)
                      ...
T Consensus       147 ~~~  149 (529)
T 2h5e_A          147 DIR  149 (529)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            653

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.43  E-value=4.8e-13  Score=139.25  Aligned_cols=111  Identities=17%  Similarity=0.140  Sum_probs=80.2

Q ss_pred             CCCCcEEEEEEcC---ChhHHHHHhhhCc--C------cC------------c---ceeeeEEEEEEEECCEEEEEEEEe
Q psy18160         43 RQSDCMAQIWLKD---RVDCMTQIVINVV--F------YP------------Y---LFSAAFITQTVCLDDVTIRFEIWD   96 (373)
Q Consensus        43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~--~------~~------------~---Tig~~~~~~~i~~~~~~v~l~i~D   96 (373)
                      +.....+++++|.   |||||+++|+...  +      ..            .   |++...  ..+.+++  +.+.|||
T Consensus         8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~--~~~~~~~--~~i~liD   83 (691)
T 1dar_A            8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAV--TTCFWKD--HRINIID   83 (691)
T ss_dssp             CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCE--EEEEETT--EEEEEEC
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccce--EEEEECC--eEEEEEE
Confidence            3455678888887   9999999998421  1      00            0   333222  2333343  6789999


Q ss_pred             CCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeC
Q psy18160         97 TAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNK  176 (373)
Q Consensus        97 t~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK  176 (373)
                      |+|+.+|...+..+++.+|++|+|+|+++..++.....|.. +..                        .++|+++|+||
T Consensus        84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~------------------------~~~p~ivviNK  138 (691)
T 1dar_A           84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK------------------------YKVPRIAFANK  138 (691)
T ss_dssp             CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH------------------------TTCCEEEEEEC
T ss_pred             CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH------------------------cCCCEEEEEEC
Confidence            99999999999999999999999999999887776665543 333                        37899999999


Q ss_pred             CCCCCC
Q psy18160        177 ADLPTS  182 (373)
Q Consensus       177 ~Dl~~~  182 (373)
                      +|+...
T Consensus       139 iD~~~~  144 (691)
T 1dar_A          139 MDKTGA  144 (691)
T ss_dssp             TTSTTC
T ss_pred             CCcccC
Confidence            998653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.42  E-value=4.2e-14  Score=133.06  Aligned_cols=153  Identities=12%  Similarity=0.100  Sum_probs=83.3

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhC-cCcCc-----------ceeeeEEEEEEEECCEEEEEEEEeCCCc-------cccc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINV-VFYPY-----------LFSAAFITQTVCLDDVTIRFEIWDTAGQ-------ERYH  104 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~-~~~~~-----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~-------e~~~  104 (373)
                      .++++++|.   |||||++++.+. .+...           |++.......+..++....+.+|||+|+       +++.
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~   97 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK   97 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence            367889996   999999998875 33321           2221111112222445678999999998       6677


Q ss_pred             ccch-------hhccCCc-------------EEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcC
Q psy18160        105 TLAP-------MYYRNAQ-------------AAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMA  164 (373)
Q Consensus       105 ~l~~-------~~~~~ad-------------~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  164 (373)
                      .+..       .++++++             +++++.+.+. .+++.+..  +.+..                     . 
T Consensus        98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~---------------------l-  152 (301)
T 2qnr_A           98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKA---------------------I-  152 (301)
T ss_dssp             THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHH---------------------H-
T ss_pred             HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHH---------------------H-
Confidence            6665       5555443             2333333222 23443331  22222                     1 


Q ss_pred             CCCCeEEEEEeCCCCCCCCcc--cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        165 PPNIVIALAGNKADLPTSRRC--VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       165 ~~~~piilVgnK~Dl~~~~~~--v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ....|+++|+||.|+... +.  +..+++.++++.++++++++||+++ |++++|..+++.+..
T Consensus       153 ~~~~~iilV~~K~Dl~~~-~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          153 HNKVNIVPVIAKADTLTL-KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             TTTSCEEEEECCGGGSCH-HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred             HhcCCEEEEEEeCCCCCH-HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence            136789999999998753 22  2346788899999999999999999 999999999988753

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.40  E-value=3.4e-13  Score=132.05  Aligned_cols=153  Identities=14%  Similarity=0.114  Sum_probs=82.9

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc-----------ceeeeEEEEEEEECCEEEEEEEEeCCCccccc-------c
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY-----------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH-------T  105 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~-----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~-------~  105 (373)
                      .+.++++|.   |||||+++|++..+...           |++.++....+..++....+.+||++|...+.       .
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~  110 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP  110 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence            367788887   99999999998876311           33322222222234445579999999986542       1


Q ss_pred             ------------------cchhhccCCcEEEEEEECCCH-hhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCC
Q psy18160        106 ------------------LAPMYYRNAQAAIIVYDITNQ-DTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAP  165 (373)
Q Consensus       106 ------------------l~~~~~~~ad~iilv~D~~~~-~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (373)
                                        +.+.+++++++.+++|+.+.. .++..+. .|+..+.                         
T Consensus       111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-------------------------  165 (418)
T 2qag_C          111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-------------------------  165 (418)
T ss_dssp             HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-------------------------
Confidence                              234456677776677776553 3555544 4554432                         


Q ss_pred             CCCeEEEEEeCCCCCCCCcccCH--HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        166 PNIVIALAGNKADLPTSRRCVEY--SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       166 ~~~piilVgnK~Dl~~~~~~v~~--~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      .++|+|+|+||+|+... +.+..  +++.+++..++++++++||+++.+++++|..+...++
T Consensus       166 ~~v~iIlVinK~Dll~~-~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          166 EKVNIIPLIAKADTLTP-EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             TTSEEEEEEESTTSSCH-HHHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred             ccCcEEEEEEcccCccH-HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence            36899999999998654 34443  5677888889999999999999999999988887665

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.39  E-value=9e-14  Score=134.02  Aligned_cols=107  Identities=15%  Similarity=0.110  Sum_probs=76.6

Q ss_pred             EEEEEeCCCcccc-------------cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhH
Q psy18160         91 RFEIWDTAGQERY-------------HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWV  157 (373)
Q Consensus        91 ~l~i~Dt~G~e~~-------------~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~  157 (373)
                      .+.+|||||..++             ..+...|++++|++|+|+|..+.....  ..|+..+..                
T Consensus       137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~----------------  198 (360)
T 3t34_A          137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISRE----------------  198 (360)
T ss_dssp             SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHH----------------
T ss_pred             CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHH----------------
Confidence            5889999998876             556778899999999999876543221  233443433                


Q ss_pred             HhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q psy18160        158 KELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIA  221 (373)
Q Consensus       158 ~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~  221 (373)
                           ....+.|+++|+||+|+.+. +....+.+..++..++.+|+++|++++.++++.+..+.
T Consensus       199 -----~~~~~~~~i~V~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~  256 (360)
T 3t34_A          199 -----VDPSGDRTFGVLTKIDLMDK-GTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA  256 (360)
T ss_dssp             -----SCTTCTTEEEEEECGGGCCT-TCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred             -----hcccCCCEEEEEeCCccCCC-cccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence                 23356799999999999764 33444445445555678899999999999887765543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.39  E-value=6.3e-13  Score=122.94  Aligned_cols=115  Identities=11%  Similarity=0.050  Sum_probs=76.8

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchh-------h--c
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPM-------Y--Y  111 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~-------~--~  111 (373)
                      ..++++++|.   |||||+|+|++..+...  +.+.++....+.++...+.+.+|||+|++++..+...       +  .
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~  117 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD  117 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence            3579999997   99999999999886433  2332222222333333467899999999887654332       1  3


Q ss_pred             cCCcEEEEEEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCC--CCeEEEEEeCCCCCCC
Q psy18160        112 RNAQAAIIVYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP--NIVIALAGNKADLPTS  182 (373)
Q Consensus       112 ~~ad~iilv~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~piilVgnK~Dl~~~  182 (373)
                      +.+|++++|+|++.. ++... .+|+..+...                     ...  ..|+++|+||+|+...
T Consensus       118 ~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~---------------------~~~~~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          118 KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDS---------------------FGKGIWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             CEECEEEEEEESSCC-CCCHHHHHHHHHHHHH---------------------HCGGGGGGEEEEEECCSCCCG
T ss_pred             CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHH---------------------hCcccccCEEEEEECcccCCc
Confidence            479999999999753 34433 3666666541                     112  2699999999998654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.39  E-value=2.2e-12  Score=134.45  Aligned_cols=110  Identities=15%  Similarity=0.070  Sum_probs=78.0

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhC--cCc------------C------c---ceeeeEEEEEEEEC-----CEEEEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINV--VFY------------P------Y---LFSAAFITQTVCLD-----DVTIRFE   93 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~--~~~------------~------~---Tig~~~~~~~i~~~-----~~~v~l~   93 (373)
                      ....+++++|.   |||||+++|+..  .+.            .      .   |+....  ..+.++     +..+.+.
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA--TTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeece--EEEEECCccccCCceeEE
Confidence            45567888886   999999999753  111            0      0   222221  223332     3448899


Q ss_pred             EEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEE
Q psy18160         94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALA  173 (373)
Q Consensus        94 i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilV  173 (373)
                      ||||+|+++|...+..+++.+|++|+|+|+++.........| ..+..                        .++|+++|
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~------------------------~~ip~ilv  140 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK------------------------YKVPRIAF  140 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH------------------------cCCCEEEE
Confidence            999999999998899999999999999999987665544433 22222                        46899999


Q ss_pred             EeCCCCCC
Q psy18160        174 GNKADLPT  181 (373)
Q Consensus       174 gnK~Dl~~  181 (373)
                      +||+|+..
T Consensus       141 iNKiD~~~  148 (704)
T 2rdo_7          141 VNKMDRMG  148 (704)
T ss_pred             EeCCCccc
Confidence            99999864

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.39  E-value=6.3e-13  Score=138.44  Aligned_cols=111  Identities=17%  Similarity=0.172  Sum_probs=77.7

Q ss_pred             EEEEEeCCCccc---ccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCC
Q psy18160         91 RFEIWDTAGQER---YHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPN  167 (373)
Q Consensus        91 ~l~i~Dt~G~e~---~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (373)
                      .+.||||||...   .......+++++|++|+|+|++++.+..+...|...+..                        .+
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~------------------------~~  230 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG------------------------RG  230 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT------------------------SC
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh------------------------hC
Confidence            488999999754   344566788999999999999988887776655443322                        35


Q ss_pred             CeEEEEEeCCCCCCCCcccCHH---H-------HHH-----HHHH--------cCCeEEEEcCC--------------CC
Q psy18160        168 IVIALAGNKADLPTSRRCVEYS---E-------GEA-----YAEE--------NGLLFMETSAK--------------TA  210 (373)
Q Consensus       168 ~piilVgnK~Dl~~~~~~v~~~---e-------~~~-----~~~~--------~~~~~~evSak--------------~~  210 (373)
                      .|+++|+||+|+... ..++.+   +       ..+     +...        ...+++++||+              ++
T Consensus       231 ~~iiiVlNK~Dl~~~-~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~  309 (695)
T 2j69_A          231 LTVFFLVNAWDQVRE-SLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDG  309 (695)
T ss_dssp             CCEEEEEECGGGGGG-GCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTT
T ss_pred             CCEEEEEECcccccc-cccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhc
Confidence            689999999998643 111111   1       111     1111        12369999999              99


Q ss_pred             CCHHHHHHHHHHHcch
Q psy18160        211 MNVNEIFVEIAKKLPK  226 (373)
Q Consensus       211 ~gI~~lf~~L~~~i~~  226 (373)
                      .|+++++..|.+.+..
T Consensus       310 ~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          310 TGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             SSHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            9999999999876643

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.37  E-value=2.6e-12  Score=125.76  Aligned_cols=152  Identities=14%  Similarity=0.067  Sum_probs=105.3

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCccc----ccccchhh---ccC
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQER----YHTLAPMY---YRN  113 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~----~~~l~~~~---~~~  113 (373)
                      .++++|.   |||||++++++......     |....  ...+.+++ ...+.+||++|..+    +..+...+   +..
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~--~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er  235 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPN--LGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIAR  235 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCE--EEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecce--eeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence            3667776   99999999998753221     33322  23445554 24578999999743    33333333   347


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160        114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA  193 (373)
Q Consensus       114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~  193 (373)
                      ++.+++++|++ ..++..+..|..++..+.              .     .....|.+||+||+|+...   ...++..+
T Consensus       236 a~~lL~vvDls-~~~~~~ls~g~~el~~la--------------~-----aL~~~P~ILVlNKlDl~~~---~~~~~l~~  292 (416)
T 1udx_A          236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYD--------------P-----ALLRRPSLVALNKVDLLEE---EAVKALAD  292 (416)
T ss_dssp             SSEEEEEEETT-SCHHHHHHHHHHHHHHHC--------------H-----HHHHSCEEEEEECCTTSCH---HHHHHHHH
T ss_pred             HHhhhEEeCCc-cCCHHHHHHHHHHHHHHh--------------H-----HhhcCCEEEEEECCChhhH---HHHHHHHH
Confidence            99999999998 667777777766665420              0     0124688999999998652   23344555


Q ss_pred             HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       194 ~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .++..+.+++++||++++|+++++++|.+.+.+
T Consensus       293 ~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~  325 (416)
T 1udx_A          293 ALAREGLAVLPVSALTGAGLPALKEALHALVRS  325 (416)
T ss_dssp             HHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHhcCCeEEEEECCCccCHHHHHHHHHHHHHh
Confidence            556667899999999999999999999998864

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.37  E-value=8.1e-13  Score=124.53  Aligned_cols=111  Identities=15%  Similarity=0.122  Sum_probs=69.4

Q ss_pred             EEEEEEeCCCccc-------------ccccchhhccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccch
Q psy18160         90 IRFEIWDTAGQER-------------YHTLAPMYYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKS  155 (373)
Q Consensus        90 v~l~i~Dt~G~e~-------------~~~l~~~~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~  155 (373)
                      ..+.||||+|..+             +......+++.+|++++|+|.++.. .......++..+.               
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~---------------  195 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---------------  195 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---------------
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC---------------
Confidence            4689999999753             4456677889999999999974432 1111112222221               


Q ss_pred             hHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCC------CCCHHHHHHHHHHHcc
Q psy18160        156 WVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT------AMNVNEIFVEIAKKLP  225 (373)
Q Consensus       156 ~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~------~~gI~~lf~~L~~~i~  225 (373)
                               ..+.|+++|+||+|+... .....+.+.......+..++++|+.+      +.|++++++.+.+.+.
T Consensus       196 ---------~~~~~~i~v~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~  261 (315)
T 1jwy_B          196 ---------PEGKRTIGVITKLDLMDK-GTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK  261 (315)
T ss_dssp             ---------SSCSSEEEEEECTTSSCS-SCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             ---------CCCCcEEEEEcCcccCCc-chHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence                     246899999999999764 22112222211111225677777654      6889999998887765

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.36  E-value=1.9e-12  Score=134.89  Aligned_cols=110  Identities=15%  Similarity=0.074  Sum_probs=79.7

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhh--CcCcC--------------------c-ceeeeEEEEEEEECCEEEEEEEEeC
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVIN--VVFYP--------------------Y-LFSAAFITQTVCLDDVTIRFEIWDT   97 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~--~~~~~--------------------~-Tig~~~~~~~i~~~~~~v~l~i~Dt   97 (373)
                      .....+++++|.   |||||+++|+.  +.+..                    . |+....  ..+.+++  +.+.||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~--~~~~~~~--~~i~liDT   82 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAA--TTAAWEG--HRVNIIDT   82 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSE--EEEEETT--EEEEEECC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeee--EEEEECC--eeEEEEEC
Confidence            345677888887   99999999995  22210                    0 222221  2334444  67899999


Q ss_pred             CCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCC
Q psy18160         98 AGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKA  177 (373)
Q Consensus        98 ~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~  177 (373)
                      +|+.+|...+..+++.+|++|+|+|+++..++.....|. .+..                        .++|+++|+||+
T Consensus        83 PG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~------------------------~~~p~ilviNK~  137 (693)
T 2xex_A           83 PGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT------------------------YGVPRIVFVNKM  137 (693)
T ss_dssp             CCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH------------------------TTCCEEEEEECT
T ss_pred             cCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH------------------------cCCCEEEEEECC
Confidence            999999999999999999999999999887776665553 3333                        367999999999


Q ss_pred             CCCCC
Q psy18160        178 DLPTS  182 (373)
Q Consensus       178 Dl~~~  182 (373)
                      |+...
T Consensus       138 Dl~~~  142 (693)
T 2xex_A          138 DKLGA  142 (693)
T ss_dssp             TSTTC
T ss_pred             Ccccc
Confidence            98653

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.34  E-value=4.6e-13  Score=129.38  Aligned_cols=96  Identities=23%  Similarity=0.269  Sum_probs=73.2

Q ss_pred             CcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCC
Q psy18160         99 GQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD  178 (373)
Q Consensus        99 G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~D  178 (373)
                      ..++|..+.+.+++.+|++++|+|++++.     ..|...+.+                     . ..+.|+++|+||+|
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~---------------------~-~~~~p~ilV~NK~D  107 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHR---------------------F-VGNNKVLLVGNKAD  107 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHH---------------------H-SSSSCEEEEEECGG
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHH---------------------H-hCCCcEEEEEEChh
Confidence            56889999999999999999999999853     345444444                     2 23789999999999


Q ss_pred             CCCCCcccCHHHHHH----HHHHcCC---eEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        179 LPTSRRCVEYSEGEA----YAEENGL---LFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       179 l~~~~~~v~~~e~~~----~~~~~~~---~~~evSak~~~gI~~lf~~L~~~  223 (373)
                      +.+.  .+..++..+    +++..|+   +++++||++|.|++++++.|.+.
T Consensus       108 L~~~--~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          108 LIPK--SVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             GSCT--TSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cCCc--ccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            9753  233344433    3667787   79999999999999999988654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.31  E-value=5.8e-15  Score=132.35  Aligned_cols=57  Identities=19%  Similarity=0.097  Sum_probs=46.0

Q ss_pred             CeEEEEEeCCCCCCCCcccCHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        168 IVIALAGNKADLPTSRRCVEYSEGEAYAEEN--GLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       168 ~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~--~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      .|.++|+||+|+.+. +.+..+++.++++..  +.+++++||++|.|++++|+.|.+.+.
T Consensus       165 ~~~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          165 TADLIVINKIDLADA-VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             TCSEEEEECGGGHHH-HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCEEEEeccccCch-hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence            466999999998643 235667777777765  578999999999999999999988764

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.30  E-value=9.1e-12  Score=121.38  Aligned_cols=168  Identities=18%  Similarity=0.121  Sum_probs=87.8

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEE-------------------EECC-EEEEEEEEeCCC
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTV-------------------CLDD-VTIRFEIWDTAG   99 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i-------------------~~~~-~~v~l~i~Dt~G   99 (373)
                      ++++++|.   |||||+|++++......     |+........+                   .+++ ..+.+++|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            36888887   99999999998863211     33333222111                   1233 257899999999


Q ss_pred             ccc----ccccch---hhccCCcEEEEEEECCCH-----------hhHHHHHHHHHHHHhh----CCCCCCc--------
Q psy18160        100 QER----YHTLAP---MYYRNAQAAIIVYDITNQ-----------DTFGRAKSWVKELQRM----APPNIDT--------  149 (373)
Q Consensus       100 ~e~----~~~l~~---~~~~~ad~iilv~D~~~~-----------~Sf~~i~~~l~~i~~~----~~~~~~~--------  149 (373)
                      +.+    ...+..   .+++++|++++|+|+++.           +++.++..|..++...    .....+.        
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~~~  160 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQ  160 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTTSS
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Confidence            854    233333   347899999999999886           5566555444443221    0000000        


Q ss_pred             ------------------ccccc-------------hhHHh----hhh-cCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160        150 ------------------FGRAK-------------SWVKE----LQR-MAPPNIVIALAGNKADLPTSRRCVEYSEGEA  193 (373)
Q Consensus       150 ------------------~~~~~-------------~~~~~----~~~-~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~  193 (373)
                                        .....             .|..+    +.. ......|+++|+||+|+. . . ...++..+
T Consensus       161 ~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-~-~-~~l~~l~~  237 (397)
T 1wxq_A          161 KIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA-S-D-EQIKRLVR  237 (397)
T ss_dssp             CCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-C-H-HHHHHHHH
T ss_pred             CccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCcccc-c-h-HHHHHHHH
Confidence                              00000             01000    000 001248999999999986 2 1 11233333


Q ss_pred             HHHHcCCeEEEEcCCCCCCHHHHHH
Q psy18160        194 YAEENGLLFMETSAKTAMNVNEIFV  218 (373)
Q Consensus       194 ~~~~~~~~~~evSak~~~gI~~lf~  218 (373)
                      .+...+.+++++||+.+.++.++++
T Consensus       238 ~~~~~~~~vv~iSA~~e~~l~~L~~  262 (397)
T 1wxq_A          238 EEEKRGYIVIPTSAAAELTLRKAAK  262 (397)
T ss_dssp             HHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred             HHhhcCCcEEEEeccchhhHHHHHh
Confidence            3333477899999999999887655

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.29  E-value=7.9e-13  Score=123.14  Aligned_cols=138  Identities=16%  Similarity=0.105  Sum_probs=92.7

Q ss_pred             EeCCCcc-cccccchhhccCCcEEEEEEECCCHhhHH--HHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEE
Q psy18160         95 WDTAGQE-RYHTLAPMYYRNAQAAIIVYDITNQDTFG--RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIA  171 (373)
Q Consensus        95 ~Dt~G~e-~~~~l~~~~~~~ad~iilv~D~~~~~Sf~--~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pii  171 (373)
                      -+.||+. +........++.+|++++|+|+.++.+..  .+.+|+                             .+.|.+
T Consensus         4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-----------------------------~~kp~i   54 (282)
T 1puj_A            4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-----------------------------KNKPRI   54 (282)
T ss_dssp             -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-----------------------------SSSCEE
T ss_pred             cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-----------------------------CCCCEE
Confidence            3456664 33344556788999999999999987654  233321                             367999


Q ss_pred             EEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCC
Q psy18160        172 LAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCC  251 (373)
Q Consensus       172 lVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc  251 (373)
                      +|+||+|+.+.   ...+...++.+..+++++++||+++.|++++++.+.+.+..+.......+                
T Consensus        55 lVlNK~DL~~~---~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~----------------  115 (282)
T 1puj_A           55 MLLNKADKADA---AVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKG----------------  115 (282)
T ss_dssp             EEEECGGGSCH---HHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTT----------------
T ss_pred             EEEECcccCCH---HHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcC----------------
Confidence            99999999652   11233344555567899999999999999999988776653321000000                


Q ss_pred             CcceeeeecccccceeecccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCc
Q psy18160        252 NTQFVQCKYKSSIHILTMANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQ  321 (373)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~  321 (373)
                                                               .....++++++|.+|||||||+|++.+..
T Consensus       116 -----------------------------------------~~~~~~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          116 -----------------------------------------VKPRAIRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             -----------------------------------------CCCCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             -----------------------------------------CCCCCceEEEEecCCCchHHHHHHHhcCc
Confidence                                                     00123788999999999999999998654

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.28  E-value=8e-12  Score=132.70  Aligned_cols=121  Identities=12%  Similarity=0.092  Sum_probs=86.1

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhC------------cCcCc---------ceeeeEEEEEEE------------ECCE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINV------------VFYPY---------LFSAAFITQTVC------------LDDV   88 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~------------~~~~~---------Tig~~~~~~~i~------------~~~~   88 (373)
                      ....+++++|.   |||||+++|+..            .+...         |++.......+.            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            34567888887   999999999864            22110         444333322333            2445


Q ss_pred             EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160         89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI  168 (373)
Q Consensus        89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (373)
                      .+.++||||+|+++|...+..+++.+|++|+|+|+++..+++....|... ..                        .++
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~------------------------~~~  151 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQA-LG------------------------ERI  151 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHH-HH------------------------TTC
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH-HH------------------------cCC
Confidence            78899999999999999999999999999999999998888776555432 22                        368


Q ss_pred             eEEEEEeCCCCCCCCcccCHHH
Q psy18160        169 VIALAGNKADLPTSRRCVEYSE  190 (373)
Q Consensus       169 piilVgnK~Dl~~~~~~v~~~e  190 (373)
                      |+++|+||+|+...+...+.++
T Consensus       152 p~ilviNK~D~~~~e~~~~~~e  173 (842)
T 1n0u_A          152 KPVVVINKVDRALLELQVSKED  173 (842)
T ss_dssp             EEEEEEECHHHHHHTSCCCHHH
T ss_pred             CeEEEEECCCcchhhhccCHHH
Confidence            9999999999863222334443

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.27  E-value=4.5e-12  Score=112.96  Aligned_cols=146  Identities=11%  Similarity=0.045  Sum_probs=91.2

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEE------------EEEEEECC------------------EEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFI------------TQTVCLDD------------------VTI   90 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~------------~~~i~~~~------------------~~v   90 (373)
                      ...++++|.   |||||+++|+.......   ++..++.            ...+.++.                  ..+
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC  109 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence            357777776   99999999997632211   2211110            01112211                  124


Q ss_pred             EEEEEeCCCcccccccchhh-ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160         91 RFEIWDTAGQERYHTLAPMY-YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV  169 (373)
Q Consensus        91 ~l~i~Dt~G~e~~~~l~~~~-~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (373)
                      .+.+|||+|+-.    .+.+ ...++++++|+|+++...  ....+...                           .+.|
T Consensus       110 d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---------------------------~~~~  156 (221)
T 2wsm_A          110 DLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGDD--VVEKHPEI---------------------------FRVA  156 (221)
T ss_dssp             SEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTT--HHHHCHHH---------------------------HHTC
T ss_pred             CEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcch--hhhhhhhh---------------------------hhcC
Confidence            578999998511    1111 236789999999876532  11111111                           1357


Q ss_pred             EEEEEeCCCCCCCCcccCHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        170 IALAGNKADLPTSRRCVEYSEGEAYAEEN--GLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       170 iilVgnK~Dl~~~~~~v~~~e~~~~~~~~--~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .++|+||+|+.+. +....++..++++..  +.+++++||++|.|++++|++|.+.+..
T Consensus       157 ~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          157 DLIVINKVALAEA-VGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             SEEEEECGGGHHH-HTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             CEEEEecccCCcc-hhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            8999999998542 224566676666654  4789999999999999999999987754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.24  E-value=1.8e-12  Score=125.29  Aligned_cols=98  Identities=23%  Similarity=0.294  Sum_probs=72.0

Q ss_pred             CCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCC
Q psy18160         98 AGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKA  177 (373)
Q Consensus        98 ~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~  177 (373)
                      ..+++|.++...+++.++++++|+|++++.+     .|...+.+                     . ..+.|+++|+||+
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~---------------------~-l~~~piilV~NK~  108 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPR---------------------F-AADNPILLVGNKA  108 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHH---------------------H-CTTSCEEEEEECG
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHH---------------------H-hCCCCEEEEEECh
Confidence            3588999999999999999999999998763     23333333                     2 2367999999999


Q ss_pred             CCCCCCcccCHHHHHH----HHHHcCC---eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        178 DLPTSRRCVEYSEGEA----YAEENGL---LFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       178 Dl~~~~~~v~~~e~~~----~~~~~~~---~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      |+.+.  ....+...+    +++..|+   +++.+||++|.|++++++.+.+..
T Consensus       109 DLl~~--~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          109 DLLPR--SVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             GGSCT--TCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             hcCCC--ccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            99753  233334433    3566676   789999999999999999886543

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.24  E-value=2.7e-13  Score=130.31  Aligned_cols=108  Identities=15%  Similarity=0.108  Sum_probs=65.6

Q ss_pred             EEEEEEeCCCcc-------------cccccchhhccCCcEEEEE-EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccch
Q psy18160         90 IRFEIWDTAGQE-------------RYHTLAPMYYRNAQAAIIV-YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKS  155 (373)
Q Consensus        90 v~l~i~Dt~G~e-------------~~~~l~~~~~~~ad~iilv-~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~  155 (373)
                      ..+.||||||..             .+..+...|+++++.++++ .|.+....-.+...++..+                
T Consensus       130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~----------------  193 (353)
T 2x2e_A          130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV----------------  193 (353)
T ss_dssp             CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH----------------
T ss_pred             CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh----------------
Confidence            568999999963             3445667788777655554 5554322212222233322                


Q ss_pred             hHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH--HHHHcC-CeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        156 WVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA--YAEENG-LLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       156 ~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~--~~~~~~-~~~~evSak~~~gI~~lf~~L~~  222 (373)
                              ...+.|+++|+||+|+.+... ...+....  +...++ .+++++||+++.|++++++.+.+
T Consensus       194 --------~~~~~~~i~V~NK~Dl~~~~~-~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          194 --------DPQGQRTIGVITKLDLMDEGT-DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             --------CTTCTTEEEEEECGGGSCTTC-CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             --------CcCCCceEEEeccccccCcch-hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence                    235789999999999975421 11111110  011123 25788999999999999999876

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.18  E-value=2.9e-12  Score=114.65  Aligned_cols=60  Identities=33%  Similarity=0.522  Sum_probs=45.5

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|+++||||+|++||+.+.|...|.||+|        .+|..+.+.+++..++|+|||+|
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig--------~d~~~k~~~~~~~~v~l~iwDta   70 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG--------IDFLSKTMYLEDRTIRLQLWDTA   70 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC------------------CEEEEEECSSCEEEEEEECCS
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccc--------eEEEEEEEEecceEEEEEEEECC
Confidence            3469999999999999999999999999999999999        78877888899999999999986

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.12  E-value=7e-11  Score=103.75  Aligned_cols=111  Identities=9%  Similarity=-0.021  Sum_probs=70.7

Q ss_pred             CCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeC
Q psy18160         97 TAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNK  176 (373)
Q Consensus        97 t~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK  176 (373)
                      .+||++++.+|+.||.++|++|||+|.+|++-++ ..+-+.++.......                ....++|++|.+||
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee----------------~~L~gapLLVlANK  171 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPA----------------FGSSGRPLLVLSCI  171 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTT----------------SSCSCSCEEEEEEE
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcch----------------hhhCCCeEEEEeCC
Confidence            3589999999999999999999999999986443 222222222211100                11257899999999


Q ss_pred             C-CCCCCCcccCHHHHHHHHH----HcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        177 A-DLPTSRRCVEYSEGEAYAE----ENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       177 ~-Dl~~~~~~v~~~e~~~~~~----~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      . |++..   .+..++.+...    ...+.+..|||++|+|+.+.++||.+.+..+
T Consensus       172 qqDlp~A---ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          172 SQGDVKR---MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             SSTTSCB---CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             CcCccCC---CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            5 77543   55555443221    1235689999999999999999998877643

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.11  E-value=8.1e-11  Score=119.37  Aligned_cols=119  Identities=12%  Similarity=0.070  Sum_probs=79.0

Q ss_pred             ccCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcC---c-ceeeeEEEEEEEECCE-----------------------
Q psy18160         39 MSGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYP---Y-LFSAAFITQTVCLDDV-----------------------   88 (373)
Q Consensus        39 ~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~---~-Tig~~~~~~~i~~~~~-----------------------   88 (373)
                      +.........+++++|.   |||||+|+|++..+..   . ..+.+. ...+..++.                       
T Consensus        57 l~~~~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~  135 (550)
T 2qpt_A           57 LEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPF  135 (550)
T ss_dssp             CCSTTTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEEEECCSSSEEECCC----------------
T ss_pred             cccccccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEEEEECCcccccCCceeeecCcccHHHHhhh
Confidence            33344556788999997   9999999999998741   1 111110 001111000                       


Q ss_pred             --------E---------EEEEEEeCCCccc-----------ccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHH
Q psy18160         89 --------T---------IRFEIWDTAGQER-----------YHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ  140 (373)
Q Consensus        89 --------~---------v~l~i~Dt~G~e~-----------~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~  140 (373)
                              .         ..+.||||+|...           |...+..+++.+|++++|+|+++.........|+..+.
T Consensus       136 g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~  215 (550)
T 2qpt_A          136 GNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR  215 (550)
T ss_dssp             --CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT
T ss_pred             cccccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH
Confidence                    0         2588999999865           44566678899999999999987554455556655543


Q ss_pred             hhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160        141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  182 (373)
                      .                        .+.|+++|+||+|+...
T Consensus       216 ~------------------------~~~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          216 G------------------------HEDKIRVVLNKADMVET  233 (550)
T ss_dssp             T------------------------CGGGEEEEEECGGGSCH
T ss_pred             h------------------------cCCCEEEEEECCCccCH
Confidence            3                        35789999999998653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=99.11  E-value=6.3e-12  Score=115.81  Aligned_cols=140  Identities=11%  Similarity=0.027  Sum_probs=90.3

Q ss_pred             cchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc
Q psy18160        106 LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC  185 (373)
Q Consensus       106 l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~  185 (373)
                      .....++++|++++|+|+.++.+.....                          +. ..  +.|.++|.||+|+.+.   
T Consensus        14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~--------------------------l~-ll--~k~~iivlNK~DL~~~---   61 (262)
T 3cnl_A           14 QIKDLLRLVNTVVEVRDARAPFATSAYG--------------------------VD-FS--RKETIILLNKVDIADE---   61 (262)
T ss_dssp             HHHHHHTTCSEEEEEEETTSTTTTSCTT--------------------------SC-CT--TSEEEEEEECGGGSCH---
T ss_pred             HHHHHHhhCCEEEEEeeCCCCCcCcChH--------------------------HH-hc--CCCcEEEEECccCCCH---
Confidence            4456688999999999999876532110                          00 01  6799999999999653   


Q ss_pred             cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccc
Q psy18160        186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIH  265 (373)
Q Consensus       186 v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~  265 (373)
                      ...+...++.+..++++ .+||+++.|++++++.+...+                                         
T Consensus        62 ~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~~~-----------------------------------------   99 (262)
T 3cnl_A           62 KTTKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFDRL-----------------------------------------   99 (262)
T ss_dssp             HHHHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCCTT-----------------------------------------
T ss_pred             HHHHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHHhh-----------------------------------------
Confidence            11233445566678888 999999999998876542100                                         


Q ss_pred             eeecccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecc
Q psy18160        266 ILTMANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMP  345 (373)
Q Consensus       266 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~  345 (373)
                                                      ++++++|.+|+|||||++++....+. ...++.|.        .....
T Consensus       100 --------------------------------~~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~--------T~~~~  138 (262)
T 3cnl_A          100 --------------------------------ARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGI--------TKGIQ  138 (262)
T ss_dssp             --------------------------------CEEEEEESTTSSHHHHHHHHHTTCC-------------------CCSC
T ss_pred             --------------------------------hheEEeCCCCCCHHHHHHHHhccccc-ccCCCCCC--------ccceE
Confidence                                            47799999999999999999866543 23455662        22222


Q ss_pred             eeeeCCeEEEEEehhhHH
Q psy18160        346 TKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       346 ~~~v~~~~~~l~iw~~~~  363 (373)
                      .+.++.   .+.|||.+-
T Consensus       139 ~~~~~~---~~~l~DtpG  153 (262)
T 3cnl_A          139 WFSLEN---GVKILDTPG  153 (262)
T ss_dssp             EEECTT---SCEEESSCE
T ss_pred             EEEeCC---CEEEEECCC
Confidence            333332   578888764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.10  E-value=8.2e-10  Score=105.84  Aligned_cols=159  Identities=12%  Similarity=-0.004  Sum_probs=94.7

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCE---------------EEEEEEEeCCCccccc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDV---------------TIRFEIWDTAGQERYH  104 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~---------------~v~l~i~Dt~G~e~~~  104 (373)
                      ++++++|.   |||||+|++++..+...     |++....  .+.+++.               ...+++|||+|+.++.
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            57888886   99999999999764322     4444332  3444442               1579999999998753


Q ss_pred             ----ccch---hhccCCcEEEEEEECCCH----------hhHHHHHHHHHHHH---------------hh-CCCCC----
Q psy18160        105 ----TLAP---MYYRNAQAAIIVYDITNQ----------DTFGRAKSWVKELQ---------------RM-APPNI----  147 (373)
Q Consensus       105 ----~l~~---~~~~~ad~iilv~D~~~~----------~Sf~~i~~~l~~i~---------------~~-~~~~~----  147 (373)
                          .+..   .+++++|++++|+|+++.          ++++++..+..++.               +. .....    
T Consensus        81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~  160 (363)
T 1jal_A           81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKF  160 (363)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHH
Confidence                3333   347899999999999862          34555443333321               10 00000    


Q ss_pred             --Ccccccc------------hhHHh----hhhc-CCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCC
Q psy18160        148 --DTFGRAK------------SWVKE----LQRM-APPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAK  208 (373)
Q Consensus       148 --~~~~~~~------------~~~~~----~~~~-~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak  208 (373)
                        ..+....            .|..+    +... .....|+++++||.|..-. .....+.+.+++...+.+++++||+
T Consensus       161 ~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~-~n~~~~~v~~~~~~~~~~~i~~sA~  239 (363)
T 1jal_A          161 ELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFE-NNPYLDRVREIAAKEGAVVVPVCAA  239 (363)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSS-SCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             HHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEeccccccc-ccHHHHHHHHHHHHcCCCEEEechH
Confidence              0000000            12111    2212 2345899999999996432 2244566778888889999999976


Q ss_pred             C
Q psy18160        209 T  209 (373)
Q Consensus       209 ~  209 (373)
                      .
T Consensus       240 ~  240 (363)
T 1jal_A          240 I  240 (363)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.06  E-value=7.8e-11  Score=113.25  Aligned_cols=103  Identities=11%  Similarity=0.052  Sum_probs=67.9

Q ss_pred             EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160         90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV  169 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (373)
                      +.+.||||+|...   .....+..+|++++|+|....+.+..+.                             ....+.|
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~-----------------------------~~~~~~p  219 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK-----------------------------KGVLELA  219 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC-----------------------------TTSGGGC
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH-----------------------------HhHhhcC
Confidence            5688999999432   2334468999999999986544321111                             0112458


Q ss_pred             EEEEEeCCCCCCCCcccCHHHHHHHHHH---c-------CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        170 IALAGNKADLPTSRRCVEYSEGEAYAEE---N-------GLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       170 iilVgnK~Dl~~~~~~v~~~e~~~~~~~---~-------~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      .++|+||+|+... .... ....++...   .       +.+++++||++|.||++++++|.+.+..
T Consensus       220 ~ivVlNK~Dl~~~-~~~~-~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          220 DIVVVNKADGEHH-KEAR-LAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             SEEEEECCCGGGH-HHHH-HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCcCh-hHHH-HHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            8999999998542 1111 111122221   1       4689999999999999999999887754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.06  E-value=1.7e-11  Score=115.17  Aligned_cols=93  Identities=16%  Similarity=0.113  Sum_probs=69.4

Q ss_pred             ccccccchhhccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160        101 ERYHTLAPMYYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL  179 (373)
Q Consensus       101 e~~~~l~~~~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl  179 (373)
                      ++...+.+..++++|.+++|+|+.++. +...+.+++..+..                        .++|++||.||+||
T Consensus        74 ~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~------------------------~~~~~vivlnK~DL  129 (307)
T 1t9h_A           74 ERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA------------------------NDIQPIICITKMDL  129 (307)
T ss_dssp             CCSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT------------------------TTCEEEEEEECGGG
T ss_pred             chhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH------------------------CCCCEEEEEECCcc
Confidence            444556677889999999999998765 55667777766554                        57899999999999


Q ss_pred             CCCCcc--cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q psy18160        180 PTSRRC--VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFV  218 (373)
Q Consensus       180 ~~~~~~--v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~  218 (373)
                      .+. ..  ...++..++++..|++++.+||+++.|+++++.
T Consensus       130 ~~~-~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          130 IED-QDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             CCC-HHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred             Cch-hhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHh
Confidence            764 11  013445556666789999999999999887654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.99  E-value=7.5e-10  Score=106.58  Aligned_cols=168  Identities=17%  Similarity=0.071  Sum_probs=95.8

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECC-------------------EEEEEEEEeCCCc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDD-------------------VTIRFEIWDTAGQ  100 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~-------------------~~v~l~i~Dt~G~  100 (373)
                      ++++++|.   |||||+|++++......     |+......  +.+.+                   ....+++|||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~--~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV--VPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE--EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee--EecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            35778886   99999999998652111     34333322  22222                   2357999999999


Q ss_pred             cccc----ccch---hhccCCcEEEEEEECCCH----------hhHHHHHHHHHHHH---------------h-------
Q psy18160        101 ERYH----TLAP---MYYRNAQAAIIVYDITNQ----------DTFGRAKSWVKELQ---------------R-------  141 (373)
Q Consensus       101 e~~~----~l~~---~~~~~ad~iilv~D~~~~----------~Sf~~i~~~l~~i~---------------~-------  141 (373)
                      .++.    .+..   .+++.+|++++|+|+++.          +.+.++..+..++.               .       
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~  159 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRE  159 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchh
Confidence            7653    2333   347899999999999862          22333322111110               0       


Q ss_pred             -------------hCCCCCCcccccchhHHh----hhhcC-CCCCeEEEEEeCCCCC--CCCcccCHHHHHHHHHHcCCe
Q psy18160        142 -------------MAPPNIDTFGRAKSWVKE----LQRMA-PPNIVIALAGNKADLP--TSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       142 -------------~~~~~~~~~~~~~~~~~~----~~~~~-~~~~piilVgnK~Dl~--~~~~~v~~~e~~~~~~~~~~~  201 (373)
                                   ......+.  ....|..+    +.... ....|+++++||.|..  +..+....+.+.++++..+.+
T Consensus       160 ~~~~~~~l~~~~~~L~~~~~~--~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~  237 (368)
T 2dby_A          160 RLPLLEAAEGLYVHLQEGKPA--RTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAE  237 (368)
T ss_dssp             GHHHHHHHHHHHHHHHTTCCG--GGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCE
T ss_pred             HHHHHHHHHHHHHHHhcCCCc--ccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCe
Confidence                         00000000  00011111    11111 2347999999999842  210124566778888888999


Q ss_pred             EEEEcCCCCCCHHHHHHH
Q psy18160        202 FMETSAKTAMNVNEIFVE  219 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~  219 (373)
                      ++++||+.+.++.++++.
T Consensus       238 vv~iSAk~E~el~eL~~~  255 (368)
T 2dby_A          238 VVVVSARLEAELAELSGE  255 (368)
T ss_dssp             EEEECHHHHHHHHTSCHH
T ss_pred             EEEeechhHHHHHHhchH
Confidence            999999987666666544

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.96  E-value=8.5e-10  Score=111.75  Aligned_cols=74  Identities=15%  Similarity=0.082  Sum_probs=57.4

Q ss_pred             EEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhh
Q psy18160         82 TVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQ  161 (373)
Q Consensus        82 ~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                      .+.+++  +.++|+||||+..|..-....++-+|++|+|+|+.+.---+...-| ..+.+                    
T Consensus        94 ~~~~~~--~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~--------------------  150 (548)
T 3vqt_A           94 QFPYRD--RVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM--------------------  150 (548)
T ss_dssp             EEEETT--EEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH--------------------
T ss_pred             EEEECC--EEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH--------------------
Confidence            344555  5689999999999999899999999999999999876544443334 33333                    


Q ss_pred             hcCCCCCeEEEEEeCCCCCCC
Q psy18160        162 RMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       162 ~~~~~~~piilVgnK~Dl~~~  182 (373)
                          .++|++++.||+|....
T Consensus       151 ----~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          151 ----RATPVMTFVNKMDREAL  167 (548)
T ss_dssp             ----TTCCEEEEEECTTSCCC
T ss_pred             ----hCCceEEEEecccchhc
Confidence                57899999999998653

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.96  E-value=6.7e-10  Score=102.15  Aligned_cols=108  Identities=7%  Similarity=-0.068  Sum_probs=74.3

Q ss_pred             CCCcccccccchhhccCCcEEEEEEECCCHhhHH---HHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEE
Q psy18160         97 TAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFG---RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALA  173 (373)
Q Consensus        97 t~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~---~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilV  173 (373)
                      .+||+..+.+|+.||.++|++|+|+|.+|++.++   ++.+....+..                    .....++|++|.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e--------------------~~~l~~apLLVf  253 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDP--------------------AFGSSGRPLLVL  253 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCH--------------------HHHCTTCCEEEE
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcc--------------------hhhcCCCeEEEE
Confidence            4789999999999999999999999999987543   22211111111                    001257899999


Q ss_pred             EeC-CCCCCCCcccCHHHHHHHHH----HcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        174 GNK-ADLPTSRRCVEYSEGEAYAE----ENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       174 gnK-~Dl~~~~~~v~~~e~~~~~~----~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +|| .|++..   .+..++.+...    ...+.+..|||.+|+|+.+.++||.+.+..+
T Consensus       254 ANKkQDlp~A---ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          254 SCISQGDVKR---MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             EEESSTTSCB---CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             eCCcccccCC---CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            997 588653   55555433221    1235689999999999999999999988644

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.91  E-value=1.6e-09  Score=98.98  Aligned_cols=109  Identities=14%  Similarity=0.024  Sum_probs=68.1

Q ss_pred             EEEEEEeCCCcccccccch------hhccCCcEEEEEEECCCHh---hHHHHHHHHHHHHhhCCCCCCcccccchhHHhh
Q psy18160         90 IRFEIWDTAGQERYHTLAP------MYYRNAQAAIIVYDITNQD---TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKEL  160 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~l~~------~~~~~ad~iilv~D~~~~~---Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~  160 (373)
                      +.+.||||+|+.++.....      ..+.. +++++++|.....   .+.....+......                   
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~-------------------  168 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL-------------------  168 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH-------------------
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc-------------------
Confidence            4688999999876543322      24456 8888888875433   33222211111111                   


Q ss_pred             hhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH----------------------------HHHHcC--CeEEEEcCCCC
Q psy18160        161 QRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA----------------------------YAEENG--LLFMETSAKTA  210 (373)
Q Consensus       161 ~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~----------------------------~~~~~~--~~~~evSak~~  210 (373)
                          ..+.|+++|+||+|+... ..  .++..+                            +++.++  .+++++||+++
T Consensus       169 ----~~~~p~~iv~NK~D~~~~-~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~  241 (262)
T 1yrb_A          169 ----RLGATTIPALNKVDLLSE-EE--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTR  241 (262)
T ss_dssp             ----HHTSCEEEEECCGGGCCH-HH--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTC
T ss_pred             ----ccCCCeEEEEeccccccc-cc--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCc
Confidence                135789999999998653 11  111111                            123333  47999999999


Q ss_pred             CCHHHHHHHHHHHcc
Q psy18160        211 MNVNEIFVEIAKKLP  225 (373)
Q Consensus       211 ~gI~~lf~~L~~~i~  225 (373)
                      .|+++++++|.+.+.
T Consensus       242 ~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          242 EGFEDLETLAYEHYC  256 (262)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhc
Confidence            999999999987764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.91  E-value=7e-10  Score=106.14  Aligned_cols=86  Identities=14%  Similarity=0.058  Sum_probs=61.4

Q ss_pred             hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160        110 YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS  189 (373)
Q Consensus       110 ~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~  189 (373)
                      .+.++|.+++|.+.....+...+.+|+.....                        .++|++||.||+||.+.......+
T Consensus       127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~------------------------~~~~~iivlNK~DL~~~~~~~~~~  182 (358)
T 2rcn_A          127 IAANIDQIVIVSAILPELSLNIIDRYLVGCET------------------------LQVEPLIVLNKIDLLDDEGMDFVN  182 (358)
T ss_dssp             EEECCCEEEEEEESTTTCCHHHHHHHHHHHHH------------------------HTCEEEEEEECGGGCCHHHHHHHH
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHh------------------------cCCCEEEEEECccCCCchhHHHHH
Confidence            46899999999776533466677788776655                        367889999999997631000122


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q psy18160        190 EGEAYAEENGLLFMETSAKTAMNVNEIFVE  219 (373)
Q Consensus       190 e~~~~~~~~~~~~~evSak~~~gI~~lf~~  219 (373)
                      +....++..|++++.+||+++.|++++...
T Consensus       183 ~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~  212 (358)
T 2rcn_A          183 EQMDIYRNIGYRVLMVSSHTQDGLKPLEEA  212 (358)
T ss_dssp             HHHHHHHTTTCCEEECBTTTTBTHHHHHHH
T ss_pred             HHHHHHHhCCCcEEEEecCCCcCHHHHHHh
Confidence            233444567899999999999999988754

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.87  E-value=1.1e-08  Score=97.91  Aligned_cols=102  Identities=11%  Similarity=0.041  Sum_probs=61.2

Q ss_pred             EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160         90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV  169 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (373)
                      +.+.++||+|...   -.......+|++++|+|.++....+.+..   .+                          -..|
T Consensus       167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i--------------------------l~~~  214 (349)
T 2www_A          167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI--------------------------IEMA  214 (349)
T ss_dssp             CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-----------------------------------------CCSC
T ss_pred             CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH--------------------------HhcC
Confidence            4578999999531   12345678999999999986543221110   01                          1347


Q ss_pred             EEEEEeCCCCCCCCcccCHHHHHHHHH----------HcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        170 IALAGNKADLPTSRRCVEYSEGEAYAE----------ENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       170 iilVgnK~Dl~~~~~~v~~~e~~~~~~----------~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      .++|+||+|+.+. ... .....++..          .+..+++.+||+++.|+++++++|.+.+.
T Consensus       215 ~ivVlNK~Dl~~~-~~~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          215 DLVAVTKSDGDLI-VPA-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             SEEEECCCSGGGH-HHH-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CEEEEeeecCCCc-hhH-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            7999999998532 000 011122221          12457899999999999999999987654

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.79  E-value=5.3e-09  Score=108.85  Aligned_cols=106  Identities=13%  Similarity=0.076  Sum_probs=67.8

Q ss_pred             EEEEEeCCCccc-------------ccccchhhc-cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchh
Q psy18160         91 RFEIWDTAGQER-------------YHTLAPMYY-RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSW  156 (373)
Q Consensus        91 ~l~i~Dt~G~e~-------------~~~l~~~~~-~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~  156 (373)
                      .+.|+||||...             ...+...|+ ..+|++++|+|+++...-.+...++..+..               
T Consensus       151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~---------------  215 (772)
T 3zvr_A          151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP---------------  215 (772)
T ss_dssp             SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT---------------
T ss_pred             ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh---------------
Confidence            477999999543             222344455 478999999999875433333233333322               


Q ss_pred             HHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH----cC-CeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        157 VKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE----NG-LLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       157 ~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~----~~-~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                               .+.|+++|.||+|+.+.. .... ...+ .+.    ++ .+++.+||++|.|++++++.+.+.
T Consensus       216 ---------~g~pvIlVlNKiDlv~~~-~~~~-~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          216 ---------QGQRTIGVITKLDLMDEG-TDAR-DVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             ---------TCSSEEEEEECTTSSCTT-CCSH-HHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             ---------cCCCEEEEEeCcccCCcc-hhhH-HHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence                     468999999999997642 1211 1111 001    12 256789999999999999988763

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.78  E-value=6.9e-09  Score=99.02  Aligned_cols=103  Identities=17%  Similarity=0.043  Sum_probs=64.0

Q ss_pred             EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160         90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV  169 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (373)
                      +.+.||||+|.....   ....+.+|++++|+|.+....+..+..   ..                          .+.|
T Consensus       149 ~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~--------------------------~~~p  196 (341)
T 2p67_A          149 YDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK---GL--------------------------MEVA  196 (341)
T ss_dssp             CSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH---HH--------------------------HHHC
T ss_pred             CCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHH---hh--------------------------hccc
Confidence            468899999965432   234689999999999875432111100   00                          1357


Q ss_pred             EEEEEeCCCCCCCCcccC--HHHHHHHHHHc-------CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        170 IALAGNKADLPTSRRCVE--YSEGEAYAEEN-------GLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       170 iilVgnK~Dl~~~~~~v~--~~e~~~~~~~~-------~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      .++|+||+|+... ....  .++..+.....       ..+++++||++|.|++++++.|.+.+.
T Consensus       197 ~ivv~NK~Dl~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          197 DLIVINKDDGDNH-TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             SEEEECCCCTTCH-HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCh-HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            8999999998642 1111  01222222222       357899999999999999999988664

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.78  E-value=3.8e-08  Score=102.83  Aligned_cols=69  Identities=17%  Similarity=0.172  Sum_probs=54.3

Q ss_pred             EEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCC
Q psy18160         88 VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPN  167 (373)
Q Consensus        88 ~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (373)
                      +.+.++|+||||+..|..-....++-+|++|+|+|+.+.-..+...-|.. +.+                        .+
T Consensus        83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~-a~~------------------------~~  137 (709)
T 4fn5_A           83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ-ANK------------------------YG  137 (709)
T ss_dssp             CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH------------------------HT
T ss_pred             CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH-HHH------------------------cC
Confidence            35789999999999999988899999999999999987554333333333 333                        37


Q ss_pred             CeEEEEEeCCCCCC
Q psy18160        168 IVIALAGNKADLPT  181 (373)
Q Consensus       168 ~piilVgnK~Dl~~  181 (373)
                      +|++++.||.|...
T Consensus       138 lp~i~~iNKiDr~~  151 (709)
T 4fn5_A          138 VPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCEEEEEECSSSTT
T ss_pred             CCeEEEEccccccC
Confidence            89999999999754

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.74  E-value=2.1e-09  Score=110.99  Aligned_cols=70  Identities=16%  Similarity=0.103  Sum_probs=53.2

Q ss_pred             EEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCC
Q psy18160         88 VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPN  167 (373)
Q Consensus        88 ~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (373)
                      +.+.++|+||||+..|.......++-+|++|+|+|+.+.-.-+...-| ..+.+                        .+
T Consensus        65 ~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~------------------------~~  119 (638)
T 3j25_A           65 ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRK------------------------MG  119 (638)
T ss_dssp             SSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHH------------------------HT
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHH------------------------cC
Confidence            346689999999999999888999999999999999875433332223 33333                        36


Q ss_pred             CeEEEEEeCCCCCCC
Q psy18160        168 IVIALAGNKADLPTS  182 (373)
Q Consensus       168 ~piilVgnK~Dl~~~  182 (373)
                      +|.+++.||+|....
T Consensus       120 lp~i~~INKmDr~~a  134 (638)
T 3j25_A          120 IPTIFFINKIDQNGI  134 (638)
T ss_dssp             CSCEECCEECCSSSC
T ss_pred             CCeEEEEeccccccC
Confidence            788999999997543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.71  E-value=3.9e-09  Score=91.43  Aligned_cols=60  Identities=18%  Similarity=0.301  Sum_probs=52.9

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ....+|++++|++++|||+|+++|+.+.|...|.||+|        .+|. +.+.+++..+.++|||++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~   77 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLE--------DTYS-SEETVDHQPVHLRVMDTA   77 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc--------ceee-EEEEECCEEEEEEEEECC
Confidence            34569999999999999999999999999999999999        6664 667789999999999986

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.67  E-value=7.6e-09  Score=88.70  Aligned_cols=61  Identities=30%  Similarity=0.432  Sum_probs=38.8

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      +..+|++++|++++|||+|+++|+.+.|...+.||+|        .+|..+.+.+++..+.++|||++-
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~Dt~G   66 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIG--------IDFKIRTIELDGKRIKLQIWDTAG   66 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHC--------EEEEEEEEEETTEEEEEEEEEC--
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--------ceeEEEEEEECCEEEEEEEEcCCC
Confidence            3568999999999999999999999999999999999        788777888899999999999873

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.65  E-value=6.6e-09  Score=91.40  Aligned_cols=62  Identities=32%  Similarity=0.458  Sum_probs=56.2

Q ss_pred             ccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       293 ~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+..+|++++|++++|||+|+++|+.+.|...+.+|+|        .+|..+.+.+++..+.++|||++
T Consensus        22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~l~Dt~   83 (201)
T 2ew1_A           22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG--------VDFMIKTVEINGEKVKLQIWDTA   83 (201)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccc--------eeEEEEEEEECCEEEEEEEEECC
Confidence            345679999999999999999999999999999999999        78877888899999999999985

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.65  E-value=7.6e-09  Score=89.67  Aligned_cols=63  Identities=33%  Similarity=0.435  Sum_probs=56.3

Q ss_pred             cccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        292 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       292 ~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+..+|++++|++++|||+|+++++.+.|...+.+|+|        .+|..+.+.+++..+.+.|||++
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~   82 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG--------VEFSTRTVMLGTAAVKAQIWDTA   82 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSS--------EEEEEEEEEETTEEEEEEEEEES
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--------eeEEEEEEEECCEEEEEEEEeCC
Confidence            3345679999999999999999999999999999999999        78877788889999999999975

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.64  E-value=5e-09  Score=91.89  Aligned_cols=61  Identities=38%  Similarity=0.535  Sum_probs=45.9

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+..+|++++|++++|||+|+++++.+.|...+.+|+|        .+|..+.+.+++..+.++|||++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~Dt~   86 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIG--------VDFTMKTLEIQGKRVKLQIWDTA   86 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC------------------CEEEEEEEETTEEEEEEEECCT
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcc--------eEEEEEEEEECCEEEEEEEEECC
Confidence            45579999999999999999999999999999999999        77776778889999999999975

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.63  E-value=8.4e-09  Score=88.00  Aligned_cols=57  Identities=23%  Similarity=0.259  Sum_probs=50.9

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++|+.+.|.. |.||+|        ..+ .+.+.+++..+.++|||++
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~--------~~~-~~~~~~~~~~~~l~i~Dt~   62 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES--------EQY-KKEMLVDGQTHLVLIREEA   62 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS--------SEE-EEEEEETTEEEEEEEEECS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc--------eeE-EEEEEECCEEEEEEEEECC
Confidence            35899999999999999999999999987 889999        555 4778889999999999985

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.63  E-value=8.9e-09  Score=89.47  Aligned_cols=64  Identities=23%  Similarity=0.409  Sum_probs=48.6

Q ss_pred             ccccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       291 ~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +...+..+|++++|++++|||+|+++++.+.|...+.+|+|        .++..+.+.+++..+.+.|||++
T Consensus        20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~l~Dt~   83 (192)
T 2il1_A           20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVG--------VDFKIKTVELRGKKIRLQIWDTA   83 (192)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTT--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccc--------eeEEEEEEEECCeEEEEEEEeCC
Confidence            34445679999999999999999999999999999999999        77777888889999999999975

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.61  E-value=1e-08  Score=89.17  Aligned_cols=60  Identities=32%  Similarity=0.468  Sum_probs=55.2

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+|++++|++|+|||||++++....|...+.||+|        .+|....+.++|+.+.++|||++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~--------~~~~~~~i~~~g~~~~~~i~Dt~   86 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--------VEFATRSIQVDGKTIKAQIWDTA   86 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--------eEEEEEEEEECCEEEEEEEEECC
Confidence            4568999999999999999999999999999999999        88877888899999999999975

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.61  E-value=1.1e-08  Score=88.87  Aligned_cols=60  Identities=25%  Similarity=0.310  Sum_probs=53.5

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ....+|++++|++++|||+|+++++.+.|...|.||+|        .++. +.+.+++..+.++|||++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~   79 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF--------ENFS-HVMKYKNEEFILHLWDTA   79 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSE--------EEEE-EEEEETTEEEEEEEEEEC
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeee--------eeeE-EEEEECCEEEEEEEEECC
Confidence            34569999999999999999999999999999999999        6665 677889999999999975

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.60  E-value=1.3e-08  Score=88.06  Aligned_cols=59  Identities=19%  Similarity=0.193  Sum_probs=52.3

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ....+|++++|++++|||+|+++|+.+.|...|.||.+         +|. +.+.+++..+.++|||++
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~---------~~~-~~~~~~~~~~~l~i~Dt~   75 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG---------RFK-KEIVVDGQSYLLLIRDEG   75 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE---------EEE-EEEEETTEEEEEEEEECS
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc---------eEE-EEEEECCEEEEEEEEECC
Confidence            34569999999999999999999999999999999954         665 788899999999999985

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.60  E-value=9.4e-09  Score=91.15  Aligned_cols=60  Identities=17%  Similarity=0.269  Sum_probs=50.8

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ....+|++++|++++|||+|+++|+.+.|...|.||+|        .+|. +.+.+++..+.++|||++
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~   83 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF--------ENYT-ACLETEEQRVELSLWDTS   83 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSE--------EEEE-EEEEC--CEEEEEEEEEC
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeee--------eeEE-EEEEECCEEEEEEEEECC
Confidence            34569999999999999999999999999999999999        6664 777889999999999975

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.60  E-value=1.2e-08  Score=88.36  Aligned_cols=62  Identities=24%  Similarity=0.441  Sum_probs=50.4

Q ss_pred             ccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       293 ~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .....+|++++|++++|||+|+++++.+.|...+.+|+|        .++..+.+.+++..+.++|||++
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~   78 (191)
T 2a5j_A           17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--------VEFGARMVNIDGKQIKLQIWDTA   78 (191)
T ss_dssp             TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CC--------SSEEEEEEEETTEEEEEEEECCT
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--------ceeEEEEEEECCEEEEEEEEECC
Confidence            345679999999999999999999999999999999999        66766777889999999999985

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.59  E-value=1.3e-08  Score=86.57  Aligned_cols=59  Identities=36%  Similarity=0.517  Sum_probs=54.2

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++++.+.|...+.+|++        .++..+.+.+++..+.+.|||++
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~Dt~   71 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG--------IDFLSKTMYLEDRTVRLQLWDTA   71 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee--------eEEEEEEEEECCeEEEEEEEECC
Confidence            458999999999999999999999999999999999        77777788889999999999975

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.59  E-value=1.2e-08  Score=88.28  Aligned_cols=59  Identities=29%  Similarity=0.522  Sum_probs=53.7

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++++.+.|...+.+|+|        .++..+.+.+++..+.+.|||++
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~Dt~   77 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG--------VDFRERAVDIDGERIKIQLWDTA   77 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCS--------CCEEEEEEEETTEEEEEEEEECC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcc--------eEEEEEEEEECCEEEEEEEEECC
Confidence            468999999999999999999999999999999999        67766778889999999999974

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.58  E-value=1.3e-08  Score=85.92  Aligned_cols=60  Identities=35%  Similarity=0.515  Sum_probs=54.3

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+|++++|++++|||+|+++++.+.|...+.||+|        .++..+.+.+++..+.+.|||++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~Dt~   63 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG--------ASFLTKKLNIGGKRVNLAIWDTA   63 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCS--------CEEEEEEEESSSCEEEEEEEECC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccc--------eEEEEEEEEECCEEEEEEEEECC
Confidence            3568999999999999999999999999999999999        77776778889999999999975

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.57  E-value=1.9e-08  Score=86.95  Aligned_cols=62  Identities=29%  Similarity=0.481  Sum_probs=55.2

Q ss_pred             ccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       293 ~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+..+|++++|++++|||+|+++++.+.|...+.+|+|        .+|..+.+.+++..+.+.|||++
T Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~Dt~   79 (189)
T 2gf9_A           18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG--------IDFKVKTVYRHDKRIKLQIWDTA   79 (189)
T ss_dssp             TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCC--------CEEEEEEEEETTEEEEEEEEECC
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcee--------EEEEEEEEEECCeEEEEEEEeCC
Confidence            345679999999999999999999999999999999999        77766777889999999999975

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.57  E-value=1.5e-06  Score=83.67  Aligned_cols=176  Identities=10%  Similarity=0.054  Sum_probs=103.0

Q ss_pred             hhhhhhhhhhhccCCCCcccccc--C----CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEE
Q psy18160         18 ALTVRVLKLKTQIPKGNWFSMMS--G----KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTV   83 (373)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i   83 (373)
                      .++.+..+++.++.......--.  +    -..+....++++|-   |||||+|++++......     |+.  .....+
T Consensus        37 ~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~--~~~g~~  114 (376)
T 4a9a_A           37 QLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLV--TVPGVI  114 (376)
T ss_dssp             HHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCC--EEEEEE
T ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceee--eeeEEE
Confidence            56777777776653322111100  1    13455678888886   99999999998764333     443  334566


Q ss_pred             EECCEEEEEEEEeCCCcccccc----cch---hhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchh
Q psy18160         84 CLDDVTIRFEIWDTAGQERYHT----LAP---MYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSW  156 (373)
Q Consensus        84 ~~~~~~v~l~i~Dt~G~e~~~~----l~~---~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~  156 (373)
                      .+++.  .++++||||.-+-..    +..   ..++.||++++|+|++++..  ....+..++....             
T Consensus       115 ~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~-------------  177 (376)
T 4a9a_A          115 RYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVG-------------  177 (376)
T ss_dssp             EETTE--EEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTT-------------
T ss_pred             EeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhh-------------
Confidence            77774  578999999643221    222   24678999999999998743  2222223333310             


Q ss_pred             HHhhhhcCCCCCeEEEEEeCCCCCCC-------CcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q psy18160        157 VKELQRMAPPNIVIALAGNKADLPTS-------RRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFV  218 (373)
Q Consensus       157 ~~~~~~~~~~~~piilVgnK~Dl~~~-------~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~  218 (373)
                            ......|.+++.||.|....       ....+.++...+...+.+.--++-...+...+++.+
T Consensus       178 ------~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d  240 (376)
T 4a9a_A          178 ------IRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLID  240 (376)
T ss_dssp             ------EEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHH
T ss_pred             ------HhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHHH
Confidence                  11235677889999996421       123556677777777665433333344556666654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.56  E-value=1.7e-08  Score=85.73  Aligned_cols=60  Identities=30%  Similarity=0.397  Sum_probs=50.7

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|++++|||+|+++++.+.|...+.||+|        .++..+.+.+++..+.+.|||++
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~Dt~   64 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG--------VEFLNKDLEVDGHFVTMQIWDTA   64 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCS--------EEEEEEEEEETTEEEEEEEEECC
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee--------eeEEEEEEEECCEEEEEEEEeCC
Confidence            3568999999999999999999999999999999999        77777788889999999999975

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.55  E-value=2.1e-08  Score=86.79  Aligned_cols=60  Identities=33%  Similarity=0.490  Sum_probs=55.2

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+|++++|++++|||+|+++++.+.|...+.+|++        .++....+.+++..+.+.|||++
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~Dt~   73 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG--------VDFKIRTIELDGKTIKLQIWDTA   73 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc--------ceEEEEEEEECCEEEEEEEEECC
Confidence            4568999999999999999999999999999999999        78877888889999999999975

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.54  E-value=1.7e-08  Score=89.03  Aligned_cols=60  Identities=18%  Similarity=0.278  Sum_probs=52.8

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ....+|++++|++++|||+|+++|+.+.|...|.||++        .++. +.+.+++..+.++|||++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~   84 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF--------ENYT-ASFEIDTQRIELSLWDTS   84 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE--------EEEE-EEEESSSSEEEEEEEEEC
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc--------eeEE-EEEEECCEEEEEEEEeCC
Confidence            34569999999999999999999999999999999999        6664 677889999999999975

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.54  E-value=1.7e-08  Score=88.02  Aligned_cols=61  Identities=33%  Similarity=0.471  Sum_probs=55.0

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+..+|++++|++++|||+|+++++.+.|...+.+|++        .++....+.+++..+.+.|||++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~Dt~   90 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG--------VDFKIRTIELDGKTIKLQIWDTA   90 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHC--------CSEEEEEEEETTEEEEEEEECCT
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc--------ceEEEEEEEECCEEEEEEEEECC
Confidence            35679999999999999999999999999999999999        67777778889999999999986

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.54  E-value=1e-08  Score=87.34  Aligned_cols=59  Identities=31%  Similarity=0.390  Sum_probs=52.1

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCC-eEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLN-NNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~-~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|++++..+.|...|.||+|        .++..+.+.+++ ..+.++|||++
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~~Dt~   64 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG--------LDFFLRRITLPGNLNVTLQIWDIG   64 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTT--------SSEEEEEEEETTTEEEEEEEEECT
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCcee--------EEEEEEEEEeCCCCEEEEEEEECC
Confidence            458999999999999999999999999999999999        666667777776 78999999985

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.53  E-value=1.8e-08  Score=89.80  Aligned_cols=60  Identities=32%  Similarity=0.471  Sum_probs=48.6

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+|++++|++++|||+|+++|+.+.|...+.||+|        .+|..+.+.+++..+.++|||++
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~   70 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIG--------VEFATRTLEIEGKRIKAQIWDTA   70 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------C--------CSEEEEEEEETTEEEEEEEECCT
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--------ceeEEEEEEECCEEEEEEEEECC
Confidence            4568999999999999999999999999999999999        67766777889999999999986

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.52  E-value=1.9e-08  Score=87.89  Aligned_cols=61  Identities=25%  Similarity=0.120  Sum_probs=48.8

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ....+|++++|+++||||||+++|+...+...+.||++        .++..+.+.+++..+.|.|||++
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~Dt~   80 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENP--------EDTYERRIMVDKEEVTLVVYDIW   80 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSC--------TTEEEEEEEETTEEEEEEEECCC
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcc--------cceEEEEEEECCEEEEEEEEecC
Confidence            34569999999999999999999986655555667777        45555677789999999999974

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.52  E-value=1.7e-08  Score=88.18  Aligned_cols=60  Identities=32%  Similarity=0.483  Sum_probs=44.3

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|++++|||+|+++++.+.|...+.+|+|        .++..+.+.+++..+.++|||++
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~Dt~   85 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLG--------VDFQMKTLIVDGERTVLQLWDTA   85 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC------------------CEEEEEEETTEEEEEEEEECT
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCcc--------ceeEEEEEEECCEEEEEEEEECC
Confidence            4468999999999999999999999999999999999        67766778889999999999975

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.52  E-value=2.3e-08  Score=87.99  Aligned_cols=58  Identities=21%  Similarity=0.190  Sum_probs=51.7

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++|+.+.|...|.||+|        .++. ..+.+++..+.++|||++
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~   65 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--------DNFS-ANVAVDGQIVNLGLWDTA   65 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSC--------CCEE-EEEECSSCEEEEEEECCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccc--------eeEE-EEEEECCEEEEEEEEECC
Confidence            458999999999999999999999999999999999        5553 667789999999999975

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.52  E-value=2.3e-08  Score=84.00  Aligned_cols=59  Identities=29%  Similarity=0.464  Sum_probs=53.3

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|++++..+.|...+.||+|        .++..+.+.+++..+.+.|||++
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~Dt~   62 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIG--------VDFLERQIQVNDEDVRLMLWDTA   62 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCS--------SSEEEEEEEETTEEEEEEEECCT
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceE--------EEEEEEEEEECCEEEEEEEEcCC
Confidence            458999999999999999999999999999999999        66666777789999999999986

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.51  E-value=3.5e-08  Score=83.96  Aligned_cols=60  Identities=33%  Similarity=0.486  Sum_probs=52.2

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+|++++|++++|||+|+++++.+.|...+.+|++        .++....+.+++..+.+.|||++
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~Dt~   66 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG--------VDFKIRTVEINGEKVKLQIWDTA   66 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBS--------EEEEEEEEEETTEEEEEEEEEET
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCce--------eEEEEEEEEECCEEEEEEEEcCC
Confidence            4568999999999999999999999999999999999        78877888889999999999986

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.51  E-value=1.8e-08  Score=88.09  Aligned_cols=61  Identities=23%  Similarity=0.401  Sum_probs=43.4

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+..+|++++|++++|||+|+++++.+.|...+.+|+|        .+|..+.+.+++..+.+.|||++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~l~Dt~   82 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIG--------VEFGSRVVNVGGKTVKLQIWDTA   82 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC--------------------CCEEEEEEEETTEEEEEEEECCT
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCccc--------ceeEEEEEEECCeeeEEEEEcCC
Confidence            34579999999999999999999999999999999999        67766777889999999999986

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.51  E-value=2.9e-08  Score=83.41  Aligned_cols=59  Identities=61%  Similarity=0.839  Sum_probs=54.0

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++++.+.|...+.+|+|        .++..+.+.+++..+.+.|||++
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~D~~   63 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG--------AAFLTQTVCLDDTTVKFEIWDTA   63 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--------eEEEEEEEEECCEEEEEEEEeCC
Confidence            468999999999999999999999999999999999        77777778889999999999974

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.51  E-value=2.4e-08  Score=85.91  Aligned_cols=59  Identities=19%  Similarity=0.274  Sum_probs=52.4

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|++++|||+|++++..+.|...|.||++        .++. +.+.+++..+.++|||++
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~   63 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF--------ENYT-ASFEIDTQRIELSLWDTS   63 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE--------EEEE-EEEECSSCEEEEEEEEEC
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--------eeEE-EEEEECCEEEEEEEEECC
Confidence            3468999999999999999999999999999999999        6664 677889999999999975

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.51  E-value=2.7e-08  Score=87.17  Aligned_cols=60  Identities=33%  Similarity=0.460  Sum_probs=54.4

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+|++++|++++|||+|++++..+.|...|.||+|        .+|..+.+.+++..+.+.|||++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~Dt~   65 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG--------VDFKIKTVELDGKTVKLQIWDTA   65 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSC--------CCEEEEEEEETTEEEEEEEECCT
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--------ceeEEEEEEECCEEEEEEEEeCC
Confidence            3568999999999999999999999999999999999        67766778889999999999986

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.51  E-value=2.5e-08  Score=87.07  Aligned_cols=59  Identities=32%  Similarity=0.497  Sum_probs=51.4

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++|+|||||++++++..|...+.||+|        .++....+.++|..+.++|||++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~--------~~~~~~~i~~~g~~~~~~i~Dt~   62 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--------VEFATRSIQVDGKTIKAQIWDTA   62 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCS--------CEEEEEEEEETTEEEEEEEEECS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--------eeEEEEEEEECCEEEEEEEEECC
Confidence            358999999999999999999999999999999999        77777888899999999999976

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.51  E-value=3e-08  Score=85.03  Aligned_cols=60  Identities=23%  Similarity=0.394  Sum_probs=54.6

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+|++++|++++|||+|+++++.+.|...+.+|+|        .++..+.+.+++..+.+.|||++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~Dt~   67 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIG--------VEFGSKIINVGGKYVKLQIWDTA   67 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSE--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--------eEEEEEEEEECCEEEEEEEEeCC
Confidence            4568999999999999999999999999999999999        77777788889999999999974

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.51  E-value=2.6e-08  Score=86.78  Aligned_cols=59  Identities=25%  Similarity=0.222  Sum_probs=44.5

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|++++|||+|+++|+.+.|...|.||++        ..+. +.+.+++..+.++|||++
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~   76 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAF--------DNFS-AVVSVDGRPVRLQLCDTA   76 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC--------CCSS--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--------ceeE-EEEEECCEEEEEEEEECC
Confidence            4568999999999999999999999999999999999        6664 677889999999999985

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.51  E-value=3.1e-08  Score=85.53  Aligned_cols=60  Identities=33%  Similarity=0.510  Sum_probs=54.8

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|++++|||+|+++++.+.|...+.+|+|        .++..+.+.+++..+.+.|||++
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~   72 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG--------VDFKVKTISVDGNKAKLAIWDTA   72 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccc--------eEEEEEEEEECCeEEEEEEEeCC
Confidence            3468999999999999999999999999999999999        78877888889999999999975

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.51  E-value=3e-08  Score=84.20  Aligned_cols=61  Identities=21%  Similarity=0.349  Sum_probs=54.2

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+..+|++++|++++|||+|+++++.+.|...+.+|+|        .++..+.+.+++..+.+.|||++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~Dt~   72 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG--------VEFGTRIIEVSGQKIKLQIWDTA   72 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCC--------CCEEEEEEEETTEEEEEEEEECT
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--------eEEEEEEEEECCeEEEEEEEECC
Confidence            34569999999999999999999999999999999999        66666777789999999999975

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.50  E-value=3.6e-08  Score=86.09  Aligned_cols=60  Identities=27%  Similarity=0.472  Sum_probs=54.6

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+|++++|++++|||+|+++++.+.|...+.+|+|        .+|..+.+.+++..+.++|||++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~Dt~   65 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG--------IDFKVKTIYRNDKRIKLQIWDTA   65 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc--------eeEEEEEEEECCeEEEEEEEECC
Confidence            3468999999999999999999999999999999999        77877788889999999999975

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.50  E-value=3.2e-08  Score=83.13  Aligned_cols=58  Identities=45%  Similarity=0.570  Sum_probs=53.2

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+++++.+.|...+.||+|        .++..+.+.+++..+.+.|||++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~D~~   60 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG--------AAFLTQRVTINEHTVKFEIWDTA   60 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--------eeEEEEEEEECCEEEEEEEEECC
Confidence            58999999999999999999999999999999999        77777778889999999999975

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.50  E-value=3.6e-08  Score=84.43  Aligned_cols=60  Identities=27%  Similarity=0.402  Sum_probs=54.2

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ....+|++++|++++|||+|+++++.+.|...|.+|++        .++ .+.+.+++..+.++|||++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~l~i~Dt~   74 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE--------DSY-LKHTEIDNQWAILDVLDTA   74 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCC--------EEE-EEEEEETTEEEEEEEEECC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc--------cee-EEEEEeCCcEEEEEEEECC
Confidence            34579999999999999999999999999999999999        777 4788899999999999975

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.48  E-value=2.3e-08  Score=84.17  Aligned_cols=58  Identities=34%  Similarity=0.523  Sum_probs=46.1

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+++++.+.|...+.||+|        .++..+.+.+++..+.+.|||++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~D~~   60 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG--------IDFKIKTVDINGKKVKLQIWDTA   60 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC---------------CCEEEEEEESSSCEEEEEEECCT
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccc--------eeEEEEEEEECCEEEEEEEEeCC
Confidence            58999999999999999999999999999999999        66766777789999999999986

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.48  E-value=4.4e-08  Score=85.47  Aligned_cols=59  Identities=22%  Similarity=0.330  Sum_probs=23.6

Q ss_pred             cceEEEEEccCccccceeeEEeeeC--cccccccCCccccccccceeeeecceeeeCCe--EEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRG--QFHEYQESTIGGECQSSHSISFSMPTKNRLNN--NVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~--~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~--~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++++.+  .|...|.+|+|        .++..+.+.+++.  .+.+.|||++
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~l~Dt~   81 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSG--------VEVVVAPVTIPDTTVSVELFLLDTA   81 (208)
T ss_dssp             EEEEEEEC------------------------------------------CEEEECTTSSEEEEEEEEETT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccc--------eEEEEEEEEECCcccEEEEEEEECC
Confidence            4689999999999999999999999  89999999999        6777777888888  9999999986

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.48  E-value=3.2e-08  Score=85.79  Aligned_cols=60  Identities=37%  Similarity=0.426  Sum_probs=54.5

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+|++++|++++|||+|+++++.+.|...+.||+|        .++..+.+.+++..+.+.|||++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~Dt~   80 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG--------ASFMTKTVPCGNELHKFLIWDTA   80 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSS--------EEEEEEEEECSSSEEEEEEEEEC
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcc--------eeEEEEEEEeCCEEEEEEEEcCC
Confidence            4569999999999999999999999999999999999        77777778889999999999985

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.47  E-value=3.4e-08  Score=85.54  Aligned_cols=59  Identities=19%  Similarity=0.225  Sum_probs=52.3

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|++++|||+|+++++.+.|...|.||++        .++. +.+.+++..+.++|||++
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~D~~   74 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF--------DHYA-VSVTVGGKQYLLGLYDTA   74 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC--------CCEE-EEEESSSCEEEEEEECCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--------ceeE-EEEEECCEEEEEEEEECC
Confidence            3568999999999999999999999999999999999        5553 667789999999999975

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.46  E-value=4e-08  Score=85.84  Aligned_cols=60  Identities=27%  Similarity=0.359  Sum_probs=54.4

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|++++|||+|+++++.+.|...|.+|+|        .++....+.+++..+.+.|||++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~Dt~   65 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG--------ADFLTKEVMVDDRLVTMQIWDTA   65 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCS--------EEEEEEEEESSSCEEEEEEEEEC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc--------ceEEEEEEEECCEEEEEEEEeCC
Confidence            3568999999999999999999999999999999999        77777788889999999999985

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.46  E-value=3.7e-08  Score=84.00  Aligned_cols=61  Identities=48%  Similarity=0.571  Sum_probs=53.7

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +...+|++++|++++|||+|+++++.+.|...+.+|+|        .++..+.+.+++..+.+.|||++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~Dt~   69 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIG--------AAFFSQTLAVNDATVKFEIWDTA   69 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSC--------CSEEEEEEEETTEEEEEEEEECC
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCce--------eEEEEEEEEECCEEEEEEEEeCC
Confidence            34568999999999999999999999999999999999        66666777789999999999975

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.46  E-value=5e-08  Score=82.92  Aligned_cols=58  Identities=24%  Similarity=0.299  Sum_probs=53.0

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++++.+.|...|.+|++        .++. +.+.+++..+.+.|||++
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~~~Dt~   65 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE--------DSYT-KICSVDGIPARLDILDTA   65 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcC--------ceEE-EEEEECCEEEEEEEEECC
Confidence            458999999999999999999999999999999999        7775 778889999999999975

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.46  E-value=3.4e-08  Score=87.68  Aligned_cols=59  Identities=25%  Similarity=0.271  Sum_probs=46.6

Q ss_pred             ccceEEEEEccCccccceeeEEeee--CcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVR--GQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~--~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|+++||||||++||+.  ..|...+. |+|        .++..+.+.++|..+.+.+||++
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~-~~g--------~d~~~~~i~~~~~~~~l~~~Dt~   95 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLG--------EDTYERTLMVDGESATIILLDMW   95 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CC--------TTEEEEEEEETTEEEEEEEECCT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC-ccc--------eeeEEEEEEECCeeeEEEEeecC
Confidence            4468999999999999999999985  44566664 578        56656778899999999999986

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.46  E-value=4.6e-08  Score=83.59  Aligned_cols=58  Identities=31%  Similarity=0.408  Sum_probs=53.0

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++++.+.|...|.||++        ..+ .+.+.+++..+.++|||++
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~~~l~Dt~   62 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE--------NTF-TKLITVNGQEYHLQLVDTA   62 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC--------EEE-EEEEEETTEEEEEEEEECC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCcc--------ccE-EEEEEECCEEEEEEEEeCC
Confidence            468999999999999999999999999999999999        677 4778889999999999975

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.45  E-value=9.7e-09  Score=88.98  Aligned_cols=64  Identities=28%  Similarity=0.408  Sum_probs=56.2

Q ss_pred             cccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        292 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       292 ~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      .+.+..+|++++|++++|||+|+++|+.+.|...+.+|+|        .++..+.+.+++..+.++|||++-
T Consensus        18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~G   81 (191)
T 3dz8_A           18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG--------IDFKVKTVYRHEKRVKLQIWDTAG   81 (191)
T ss_dssp             TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEET--------TTEEEEEEEETTTTEEEEEECHHH
T ss_pred             cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCee--------eEEEEEEEEECCEEEEEEEEeCCC
Confidence            3446789999999999999999999999999999999999        666667777889999999999863

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.45  E-value=2.8e-08  Score=87.80  Aligned_cols=61  Identities=25%  Similarity=0.329  Sum_probs=52.9

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCe----------EEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNN----------NVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~----------~~~l~iw~~~  362 (373)
                      .+..+|++++|++++|||+|+++|+.+.|...+.+|+|        .+|..+.+.+++.          .+.++|||++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~   92 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVG--------IDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTA   92 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEE--------EEEEEEEEEEEC-------CCEEEEEEEEEEEE
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCcee--------EEEEEEEEEECCccccccccCceeEEEEEEECC
Confidence            35579999999999999999999999999999999999        6776667777777          8999999985

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.45  E-value=5.5e-08  Score=81.80  Aligned_cols=59  Identities=34%  Similarity=0.419  Sum_probs=53.7

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++++.+.|...+.||+|        .++..+.+.+++..+.+.|||++
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~Dt~   63 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG--------ASFMTKTVQYQNELHKFLIWDTA   63 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcee--------EEEEEEEEEECCeEEEEEEEcCC
Confidence            458999999999999999999999999999999999        77776777889999999999974

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.44  E-value=4.4e-08  Score=86.91  Aligned_cols=61  Identities=23%  Similarity=0.367  Sum_probs=55.1

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ....+|++++|++++|||||+++|+.+.|...|.+|+|        .++....+.+++..+.+.|||++
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~   72 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--------VEVHPLVFHTNRGPIKFNVWDTA   72 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTT--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--------eeEEEEEEEECCEEEEEEEEeCC
Confidence            34569999999999999999999999999999999999        77777778889999999999975

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.43  E-value=5e-07  Score=85.95  Aligned_cols=103  Identities=12%  Similarity=0.056  Sum_probs=61.7

Q ss_pred             EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160         90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV  169 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (373)
                      +.+.|+||+|...-   .......+|.+++++|....+..+.+...   +                          ...|
T Consensus       148 ~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i--------------------------~~~~  195 (337)
T 2qm8_A          148 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---I--------------------------FELA  195 (337)
T ss_dssp             CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---H--------------------------HHHC
T ss_pred             CCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---H--------------------------hccc
Confidence            45789999996432   12345789999999998654321111100   0                          1234


Q ss_pred             EEEEEeCCCCCCCCcccCHHHHHHHHHHc----------CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        170 IALAGNKADLPTSRRCVEYSEGEAYAEEN----------GLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       170 iilVgnK~Dl~~~~~~v~~~e~~~~~~~~----------~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      .++|.||+|+... ........+++....          ..+++.+||+++.|++++++.|.+...
T Consensus       196 ~ivvlNK~Dl~~~-~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          196 DMIAVNKADDGDG-ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             SEEEEECCSTTCC-HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             cEEEEEchhccCc-hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5777799997542 111111223332211          346889999999999999999887654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.43  E-value=5.4e-08  Score=84.23  Aligned_cols=50  Identities=52%  Similarity=0.719  Sum_probs=42.4

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeE
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNN  353 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~  353 (373)
                      ..+|++++|++++|||||+++++.+.|...+.||+|        .++..+.+.+++..
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~   55 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIG--------ASFCTYVVNLNDIN   55 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCS--------CEEEEEEEETTC--
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCcccc--------ceeEEEEEEecCcc
Confidence            468999999999999999999999999999999999        66666666677766

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.43  E-value=6.6e-08  Score=82.32  Aligned_cols=60  Identities=30%  Similarity=0.422  Sum_probs=52.5

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCccc-ccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFH-EYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~-~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+|++++|++++|||+|+++++.+.|. ..+.||+|        .++....+.+++..+.++|||++
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~Dt~   68 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVG--------IDFRNKVLDVDGVKVKLQMWDTA   68 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCS--------CEEEEEEEEETTEEEEEEEEECC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCcee--------eEEEEEEEEECCEEEEEEEEeCC
Confidence            45689999999999999999999999885 57899999        67766667789999999999975

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.42  E-value=5.9e-08  Score=81.34  Aligned_cols=57  Identities=33%  Similarity=0.470  Sum_probs=51.5

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+++++.+.|...|.||++        .++. +.+.+++..+.+.|||++
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~l~D~~   59 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE--------DSYR-KQVEVDCQQCMLEILDTA   59 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSE--------EEEE-EEEESSSCEEEEEEEEEC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcc--------ceEE-EEEEECCEEEEEEEEECC
Confidence            48999999999999999999999999999999999        6664 677789999999999975

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.42  E-value=2.7e-08  Score=85.75  Aligned_cols=58  Identities=17%  Similarity=0.260  Sum_probs=36.2

Q ss_pred             ceEEEEEccCccccceeeEEeeeC--cccccccCCccccccccceeeeecceeee---CCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRG--QFHEYQESTIGGECQSSHSISFSMPTKNR---LNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~--~f~~~~~~Tig~~~~~~~~~~~~~~~~~v---~~~~~~l~iw~~~  362 (373)
                      .+|++++|++|||||||+++|+..  .|...|.||+|        ++|....+.+   ++..+.++|||++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g--------~~~~~~~~~~~~~~~~~~~~~i~Dt~   64 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVG--------IDVKDWPIQIRDKRKRDLVLNVWDFA   64 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CS--------EEEEEEEC---------CEEEEEEEC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceecc--------EEeEEeeeccccCCCCceEEEEEecC
Confidence            479999999999999999999984  68888999999        6665444443   4678999999986

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.42  E-value=6.5e-08  Score=85.54  Aligned_cols=59  Identities=24%  Similarity=0.280  Sum_probs=45.2

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      ..+|++++|++++|||+|+++|+.+.|...|.||++        ..+. +.+.+++..+.+.|||++-
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~l~l~Dt~G   91 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF--------ERYM-VNLQVKGKPVHLHIWDTAG   91 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------CCCCC--------EEEE-EEEEETTEEEEEEEEEC--
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc--------eeEE-EEEEECCEEEEEEEEECCC
Confidence            358999999999999999999999999999999998        6664 6788899999999999863

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.42  E-value=7.3e-08  Score=83.72  Aligned_cols=58  Identities=24%  Similarity=0.381  Sum_probs=52.3

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++++.+.|...|.||++        .++. +.+.+++..+.++|||++
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~l~Dt~   84 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE--------STYR-HQATIDDEVVSMEILDTA   84 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCC--------ceEE-EEEEECCEEEEEEEEECC
Confidence            458999999999999999999999999999999999        6664 667889999999999975

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.41  E-value=6.8e-08  Score=82.58  Aligned_cols=57  Identities=21%  Similarity=0.237  Sum_probs=51.4

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+++++.+.|...|.+|++        ..+. ..+.+++..+.++|||++
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~   61 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--------DNYS-ANVMVDGKPVNLGLWDTA   61 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC--------CEEE-EEEEETTEEEEEEEECCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccc--------ceeE-EEEEECCEEEEEEEEECC
Confidence            58999999999999999999999999999999998        5553 667789999999999975

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.41  E-value=7.4e-08  Score=82.82  Aligned_cols=60  Identities=27%  Similarity=0.428  Sum_probs=51.6

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeee-cceeeeCCe---------EEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFS-MPTKNRLNN---------NVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~-~~~~~v~~~---------~~~l~iw~~~  362 (373)
                      +..+|++++|++++|||+|+++++.+.|...+.||+|        .+|. .+.+.+++.         .+.+.|||++
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   78 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVG--------IDFREKRVVYRANGPDGAVGRGQRIHLQLWDTA   78 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCS--------EEEEEEEEEECTTSCCCSSCCCEEEEEEEEEEC
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccc--------eeeeeEEEEEecCCcccccccCcEEEEEEEeCC
Confidence            4568999999999999999999999999999999999        6665 455666766         8999999974

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.41  E-value=3.1e-08  Score=85.51  Aligned_cols=60  Identities=17%  Similarity=0.200  Sum_probs=50.6

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccc-----------cCCccccccccceeeeeccee-eeCCeEEEEEehhh
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQ-----------ESTIGGECQSSHSISFSMPTK-NRLNNNVPITFVWV  361 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~-----------~~Tig~~~~~~~~~~~~~~~~-~v~~~~~~l~iw~~  361 (373)
                      ....+|++++|++++|||+|+ +++.+.|...|           .||+|        .++..+.+ .+++..+.++|||+
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~i~Dt   81 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLF--------FDFLPLDIGEVKGFKTRFHLYTV   81 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEE--------EEECCSSCCCSSSCEEEEEEEEC
T ss_pred             cccccEEEEECCCCCCHHHHH-HHHHhhcccccccccccccccccccee--------eeecccccccccCCceEEEEEeC
Confidence            345799999999999999999 78888888774           56888        77776667 78999999999997


Q ss_pred             H
Q psy18160        362 I  362 (373)
Q Consensus       362 ~  362 (373)
                      +
T Consensus        82 ~   82 (198)
T 3t1o_A           82 P   82 (198)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.40  E-value=7.6e-08  Score=84.45  Aligned_cols=59  Identities=34%  Similarity=0.521  Sum_probs=53.0

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++++.+.|...+.||+|        .++....+.+++..+.+.|||++
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~Dt~   77 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG--------IDFKIKTVDINGKKVKLQLWDTA   77 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCS--------CCEEEEEEEETTEEEEEEEECCT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCccc--------ceEEEEEEEECCEEEEEEEEeCC
Confidence            458999999999999999999999999999999999        67766777889999999999985

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.39  E-value=9.8e-08  Score=81.57  Aligned_cols=59  Identities=27%  Similarity=0.354  Sum_probs=52.1

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|++++|||+|+++++.+.|...|.+|++        ..+. +.+.+++..+.+.|||++
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~l~Dt~   74 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA--------DSYR-KKVVLDGEEVQIDILDTA   74 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccc--------eEEE-EEEEECCEEEEEEEEECC
Confidence            3468999999999999999999999999999999999        6664 667789999999999975

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.39  E-value=1e-07  Score=83.10  Aligned_cols=59  Identities=27%  Similarity=0.354  Sum_probs=52.5

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|++++|||+|+++++.+.|...|.+|++        ..+. ..+.+++..+.+.|||++
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~l~Dt~   70 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA--------DSYR-KKVVLDGEEVQIDILDTA   70 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--------eEEE-EEEEECCEEEEEEEEcCC
Confidence            3468999999999999999999999999999999999        6664 677789999999999975

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.38  E-value=1.2e-07  Score=82.93  Aligned_cols=58  Identities=24%  Similarity=0.328  Sum_probs=51.5

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|++++..+.|...|.||++        .++. ..+.+++..+.++|||++
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~   81 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF--------ENYI-ADIEVDGKQVELALWDTA   81 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSC--------CCCE-EEEEETTEEEEEEEECCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCccc--------ceEE-EEEEECCEEEEEEEEECC
Confidence            468999999999999999999999999999999999        5554 456789999999999975

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.38  E-value=1e-07  Score=82.14  Aligned_cols=60  Identities=23%  Similarity=0.383  Sum_probs=52.4

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ....+|++++|++|+|||||+++++.+.|...+.+|++        ..+. +.+.+++..+.+.|||++
T Consensus        18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~l~Dt~   77 (190)
T 3con_A           18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE--------DSYR-KQVVIDGETCLLDILDTA   77 (190)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred             ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccc--------eEEE-EEEEECCEEEEEEEEECC
Confidence            34568999999999999999999999999999999998        5664 677889999999999975

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.38  E-value=1.1e-07  Score=79.52  Aligned_cols=57  Identities=30%  Similarity=0.422  Sum_probs=51.3

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+++++.+.|...+.+|++        ..+ .+.+.+++..+.+.|||++
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~l~D~~   59 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE--------DFY-RKEIEVDSSPSVLEILDTA   59 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC--------EEE-EEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc--------eeE-EEEEEECCEEEEEEEEECC
Confidence            48999999999999999999999999999999998        445 4778889999999999975

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.38  E-value=8.2e-08  Score=84.32  Aligned_cols=59  Identities=22%  Similarity=0.330  Sum_probs=45.5

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|++++|||+|+++++.+.|...|.||++        .++. ..+.+++..+.+.|||++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~   81 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVF--------ENYV-ADIEVDGKQVELALWDTA   81 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------C--------CEEE-EEEEETTEEEEEEEEECT
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCccc--------ceEE-EEEEECCEEEEEEEEECC
Confidence            3468999999999999999999999999999999999        6664 557789999999999985

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.37  E-value=6.2e-08  Score=84.62  Aligned_cols=59  Identities=27%  Similarity=0.381  Sum_probs=49.1

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|++++|||+|+++++.+.|...|.+|++        .++ .+.+.+++..+.+.|||++
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~~~l~Dt~   80 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVE--------NTY-SKIVTLGKDEFHLHLVDTA   80 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSE--------EEE-EEEEC----CEEEEEEEEC
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccc--------eEE-EEEEEECCEEEEEEEEECC
Confidence            3468999999999999999999999999999999999        667 4777788999999999975

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.35  E-value=7.4e-08  Score=83.80  Aligned_cols=58  Identities=26%  Similarity=0.305  Sum_probs=45.0

Q ss_pred             cceEEEEEccCccccceeeEEeee--CcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVR--GQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~--~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|+++||||||+++|++  ..|...+. ++|        .++..+.+.++|..+.+.+||++
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~l~~~Dt~   64 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLG--------EDTYERTLMVDGESATIILLDMW   64 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----G-GGC--------TTEEEEEEEETTEEEEEEEECCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-ccc--------eeEEEEEEEECCeEEEEEEEEec
Confidence            358999999999999999999985  45666664 577        56556778889999999999985

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.35  E-value=6e-08  Score=82.53  Aligned_cols=60  Identities=25%  Similarity=0.371  Sum_probs=48.8

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeC-CeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRL-NNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~-~~~~~l~iw~~~  362 (373)
                      ...+|++++|++++|||+|+++++.+.|...+.||+|        .++..+.+.++ +..+.+.|||++
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~Dt~   66 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIG--------ADFLTKEVTVDGDKVATMQVWDTA   66 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CC--------CSCEEEEECCSSSCCEEEEEECCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccc--------eEEEEEEEEEcCCcEEEEEEEECC
Confidence            3468999999999999999999999999999999999        56655666677 778999999986

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.35  E-value=1.4e-07  Score=78.94  Aligned_cols=57  Identities=28%  Similarity=0.347  Sum_probs=51.3

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|++++..+.|...+.+|++        .++. ..+.+++..+.+.|||++
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~l~D~~   60 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA--------DSYR-KKVVLDGEEVQIDILDTA   60 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcc--------eEEE-EEEEECCEEEEEEEEECC
Confidence            48999999999999999999999999999999999        5664 667789999999999975

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.34  E-value=3.5e-08  Score=84.24  Aligned_cols=58  Identities=22%  Similarity=0.216  Sum_probs=35.9

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++++.+.|...|.||++        ..+. ..+.+++..+.++|||++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~   64 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF--------DNFS-ANVVVNGATVNLGLWDTA   64 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------CB-CCCC-------CEEECCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeee--------eeEE-EEEEECCEEEEEEEEECC
Confidence            358999999999999999999999999999999999        5554 556778999999999975

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.34  E-value=1.4e-07  Score=81.70  Aligned_cols=58  Identities=31%  Similarity=0.473  Sum_probs=51.5

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++++.+.|...|.||++        ..+. +.+.+++..+.+.|||++
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~l~Dt~   64 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIE--------DTYR-QVISCDKSVCTLQITDTT   64 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccc--------ccee-EEEEECCEEEEEEEEeCC
Confidence            458999999999999999999999999999999999        5554 566789999999999985

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.33  E-value=2.7e-07  Score=89.28  Aligned_cols=81  Identities=9%  Similarity=-0.047  Sum_probs=46.9

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCE---------------EEEEEEEeCCCcccc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDV---------------TIRFEIWDTAGQERY  103 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~---------------~v~l~i~Dt~G~e~~  103 (373)
                      ..+++++|.   |||||+|++++..+...     |++...  ..+.+++.               ...+++|||+|..++
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~--g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNE--SRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-------------CCSE--EEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCcee--EEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            357888886   99999999998865332     444333  34455442               235899999998875


Q ss_pred             cc-------cchhhccCCcEEEEEEECCCHhhH
Q psy18160        104 HT-------LAPMYYRNAQAAIIVYDITNQDTF  129 (373)
Q Consensus       104 ~~-------l~~~~~~~ad~iilv~D~~~~~Sf  129 (373)
                      .+       .+..+++++|++++|+|+++..++
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC------
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence            54       345678999999999999865443

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.66  E-value=7.1e-08  Score=84.39  Aligned_cols=59  Identities=19%  Similarity=0.170  Sum_probs=52.1

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|++++|||+|+++|+.+.|...+.+|++        ..+ ...+.+++..+.++|||++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~l~i~Dt~   86 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--------DNY-SANVMVDGKPVNLGLWDTA   86 (204)
Confidence            3468999999999999999999999999999999998        555 3667788999999999986

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.31  E-value=1.3e-07  Score=82.87  Aligned_cols=59  Identities=19%  Similarity=0.170  Sum_probs=49.8

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|++++|||+|+++|+.+.|...+.+|++        ..+ ...+.+++..+.++|||++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~l~i~Dt~   86 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--------DNY-SANVMVDGKPVNLGLWDTA   86 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE--------EEE-EEEEECC-CEEEEEEEEEC
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec--------cee-EEEEEECCEEEEEEEEECC
Confidence            4468999999999999999999999999999999998        445 4778889999999999975

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.30  E-value=2.1e-07  Score=78.19  Aligned_cols=57  Identities=30%  Similarity=0.469  Sum_probs=50.6

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+++++.+.|...+.||++        ..+. +.+.+++..+.+.|||++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~~~Dt~   59 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE--------DTYR-QVISCDKSICTLQITDTT   59 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcc--------ccEE-EEEEECCEEEEEEEEECC
Confidence            48999999999999999999999999999999999        5554 566788999999999975

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.29  E-value=2.2e-07  Score=79.54  Aligned_cols=58  Identities=24%  Similarity=0.380  Sum_probs=51.5

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++++.+.|...|.+|++        ..+ ...+.+++..+.++|||++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~~~i~Dt~   60 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE--------DSY-RKQVVIDGETCLLDILDTA   60 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC--------EEE-EEEEEETTEEEEEEEEECC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch--------heE-EEEEEECCcEEEEEEEECC
Confidence            358999999999999999999999999999999998        444 3777889999999999974

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.26  E-value=1.8e-07  Score=78.70  Aligned_cols=58  Identities=24%  Similarity=0.142  Sum_probs=41.3

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+++++...+...+.++.+        .++..+.+.+++..+.+.|||++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~D~~   59 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENS--------EDTYERRIMVDKEEVTLIVYDIW   59 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC--------------------CEEEEEEEETTEEEEEEEECCC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCc--------CCeeeEEEEECCeEEEEEEEECC
Confidence            37999999999999999999998888877777777        56666778889999999999975

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.26  E-value=2e-07  Score=78.78  Aligned_cols=58  Identities=26%  Similarity=0.337  Sum_probs=45.3

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++++.+.|...+ +|+|        .++..+.+.+++..+.+.|||++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~D~~   60 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLG--------EDVYERTLTVDGEDTTLVVVDTW   60 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSS--------SSEEEEEEEETTEEEEEEEECCC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCcccc-Cccc--------cceeEEEEEECCEEEEEEEEecC
Confidence            3589999999999999999999998887665 4678        55555677789999999999986

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.26  E-value=4.7e-06  Score=80.61  Aligned_cols=77  Identities=12%  Similarity=0.029  Sum_probs=52.1

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc------ceeeeEEEEEEEECCE---------------EEEEEEEeCCCccc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY------LFSAAFITQTVCLDDV---------------TIRFEIWDTAGQER  102 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~------Tig~~~~~~~i~~~~~---------------~v~l~i~Dt~G~e~  102 (373)
                      -.+++++|.   |||||+|++++......      |+..+  ...+.+++.               ...+.+||++|...
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~--~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE--EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT--EEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce--eeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            357888887   99999999999765221      33333  334555541               13588999999643


Q ss_pred             c-------cccchhhccCCcEEEEEEECCC
Q psy18160        103 Y-------HTLAPMYYRNAQAAIIVYDITN  125 (373)
Q Consensus       103 ~-------~~l~~~~~~~ad~iilv~D~~~  125 (373)
                      .       .......++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2       2233445789999999999864

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.24  E-value=3.2e-07  Score=80.92  Aligned_cols=62  Identities=23%  Similarity=0.333  Sum_probs=48.7

Q ss_pred             ccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeee-CCeEEEEEehhhH
Q psy18160        293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNR-LNNNVPITFVWVI  362 (373)
Q Consensus       293 ~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v-~~~~~~l~iw~~~  362 (373)
                      .....+|++++|++++|||+|+++++.+.|...+.+|+|        .++....+.. ++..+.+.|||++
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~l~Dt~   69 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVG--------AVNHPVTFLDDQGNVIKFNVWDTA   69 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTT--------EEEEEEEEEBTTSCEEEEEEEEEC
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--------eeeEEEEEEeCCCcEEEEEEEecC
Confidence            344579999999999999999999999999999999999        4544333333 3556999999985

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.23  E-value=3.3e-07  Score=76.27  Aligned_cols=57  Identities=25%  Similarity=0.394  Sum_probs=50.7

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++|+|||+|++++..+.|...+.+|++        ..+. +.+.+++..+.+.|||+.
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~D~~   59 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE--------DSYR-KQVVIDGETCLLDILDTA   59 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccc--------eEEE-EEEEECCEEEEEEEEECC
Confidence            47999999999999999999999999999999998        5553 677789999999999974

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.22  E-value=1.6e-07  Score=81.33  Aligned_cols=58  Identities=17%  Similarity=0.185  Sum_probs=43.9

Q ss_pred             ccccceEEEEEccCccccceeeEEeeeCcccc-cccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHE-YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       293 ~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~-~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +....+|++++|++++|||+|+++|+.+.|.. .|.||+|        ..+.  .  +++..+.++|||++
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--------~~~~--~--~~~~~~~~~i~Dt~   71 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--------YNVE--T--FEKGRVAFTVFDMG   71 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--------EEEE--E--EEETTEEEEEEEEC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--------eeEE--E--EEeCCEEEEEEECC
Confidence            34556899999999999999999999999999 8999999        3332  2  35677899999975

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.21  E-value=1.9e-07  Score=80.57  Aligned_cols=56  Identities=27%  Similarity=0.326  Sum_probs=46.5

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|++++|||+|+++++.+.|...+.||+|        .++.  .  ++...+.+.|||++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~--~--~~~~~~~~~l~Dt~   75 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--------FNMR--K--ITKGNVTIKLWDIG   75 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCS--------EEEE--E--EEETTEEEEEEEEC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCc--------eeEE--E--EEeCCEEEEEEECC
Confidence            3468999999999999999999999999999999999        5543  2  23446889999975

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.17  E-value=1.2e-07  Score=86.48  Aligned_cols=65  Identities=23%  Similarity=0.317  Sum_probs=44.2

Q ss_pred             ccceEEEEEccC---------ccccceeeEEeee---CcccccccCCc-cccccccceeeee-------cceeeeCCeEE
Q psy18160        295 ICQYKLVLLGES---------AVGKSSLVLRFVR---GQFHEYQESTI-GGECQSSHSISFS-------MPTKNRLNNNV  354 (373)
Q Consensus       295 ~~~~k~~~iG~~---------~vGks~l~~~~~~---~~f~~~~~~Ti-g~~~~~~~~~~~~-------~~~~~v~~~~~  354 (373)
                      ...+|++++|++         +||||||++||+.   +.|...|.||+ |.+|..+. +.+.       ...+.+++..+
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRV-VNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTT-TTTCSEEEEEEEC---------
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeE-eecccccccccccccccCCcEE
Confidence            456999999999         9999999999998   77888888987 86665544 2211       01122688999


Q ss_pred             EEEehh
Q psy18160        355 PITFVW  360 (373)
Q Consensus       355 ~l~iw~  360 (373)
                      .++|||
T Consensus        96 ~l~i~D  101 (255)
T 3c5h_A           96 KMHIVE  101 (255)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            999999

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.13  E-value=4.6e-07  Score=78.14  Aligned_cols=56  Identities=16%  Similarity=0.197  Sum_probs=45.3

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCc-ccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQ-FHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~-f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|++++|||+|+++++.+. |...+.+|+|        ..  .+.+.+++  +.+.|||++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--------~~--~~~~~~~~--~~~~l~Dt~   75 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--------FS--IEKFKSSS--LSFTVFDMS   75 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--------EE--EEEEECSS--CEEEEEEEC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--------ee--EEEEEECC--EEEEEEECC
Confidence            456899999999999999999999888 7888999998        32  24555665  688999985

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.08  E-value=4.7e-07  Score=77.47  Aligned_cols=56  Identities=16%  Similarity=0.193  Sum_probs=43.8

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ....+|++++|++++|||+|+++++.+.| ..+.+|+|.        .+  +.+.+++  +.+.|||++
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~--------~~--~~~~~~~--~~~~i~Dt~   73 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGS--------NV--EEIVINN--TRFLMWDIG   73 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSS--------SC--EEEEETT--EEEEEEEES
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCce--------ee--EEEEECC--EEEEEEECC
Confidence            34568999999999999999999999988 678899992        22  3444555  889999975

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.06  E-value=8.3e-07  Score=74.30  Aligned_cols=57  Identities=21%  Similarity=0.225  Sum_probs=40.2

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      .+|++++|++++|||+|++++....+. .+.+|.|        ..+. +.+.+++..+.+.|||++-
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~--------~~~~-~~~~~~~~~~~~~i~D~~g   58 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAG--------HTYD-RSIVVDGEEASLMVYDIWE   58 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-------------------CEEE-EEEEETTEEEEEEEEECC-
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccc--------cceE-EEEEECCEEEEEEEEECCC
Confidence            479999999999999999999866554 4567888        5553 6778899999999999863

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=98.05  E-value=1.2e-06  Score=82.31  Aligned_cols=57  Identities=21%  Similarity=0.229  Sum_probs=51.7

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+++++.+.|...|.+|++        ..+. +.+.+++..+.++|||++
T Consensus       155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~l~Dt~  211 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--------DNYS-ANVMVDGKPVNLGLWDTA  211 (332)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSE--------EEEE-EEEEETTEEEEEEEEEEC
T ss_pred             eeEEEEECCCCCChHHHHHHHHhCCCCcccCCccc--------ceeE-EEEEECCEEEEEEEEeCC
Confidence            48999999999999999999999999999999998        5664 777889999999999975

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.01  E-value=8.8e-07  Score=77.84  Aligned_cols=56  Identities=25%  Similarity=0.322  Sum_probs=44.9

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCe-EEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNN-NVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~-~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||||+++|+.+.|...|.+|.         .++.  .+.+++. .+.++|||++
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~---------~~~~--~~~~~~~~~~~~~i~Dt~   62 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT---------DSSA--IYKVNNNRGNSLTLIDLP   62 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS---------CEEE--EEECSSTTCCEEEEEECC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc---------eeeE--EEEecCCCccEEEEEECC
Confidence            45899999999999999999999999999887554         3443  2666765 7999999975

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.99  E-value=1.1e-06  Score=75.61  Aligned_cols=54  Identities=17%  Similarity=0.227  Sum_probs=43.9

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++++.+.|. .+.||+|.        +  .+.+.+++  +.++|||++
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--------~--~~~~~~~~--~~~~i~Dt~   68 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS--------N--VEEIVINN--TRFLMWDIG   68 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCS--------S--CEEEEETT--EEEEEEECC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCcc--------c--eEEEEECC--EEEEEEECC
Confidence            3589999999999999999999999888 78899982        2  23444554  889999985

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.97  E-value=1.4e-06  Score=73.51  Aligned_cols=56  Identities=14%  Similarity=0.111  Sum_probs=39.6

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++|+|||||++++.+..+...+.|+++        +++....+.+++  ..++|||++
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t--------~~~~~~~~~~~~--~~l~i~Dt~   58 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVT--------VEKKEGEFEYNG--EKFKVVDLP   58 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----C--------CCCCEEEEEETT--EEEEEEECC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcc--------eeeeEEEEEECC--cEEEEEECC
Confidence            37899999999999999999998877666667776        344334455555  579999985

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.95  E-value=1.5e-06  Score=75.69  Aligned_cols=53  Identities=19%  Similarity=0.147  Sum_probs=39.6

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++|+|||+|++++..+.|. .|.||+|        .+  ...+.+++  +.++|||++
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~--------~~--~~~~~~~~--~~l~i~Dt~   77 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--------PT--SEELTIAG--MTFTTFDLG   77 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-------CCCC--------CS--CEEEEETT--EEEEEEEEC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCC--------ce--eEEEEECC--EEEEEEECC
Confidence            479999999999999999999998885 5889998        32  24566677  889999985

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.94  E-value=1.7e-06  Score=73.19  Aligned_cols=56  Identities=16%  Similarity=0.167  Sum_probs=46.3

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+++++.+.|...+.++++        .++....+.+++..  +.|||++
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~--~~l~Dt~   63 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGIT--------QHIGAYQVTVNDKK--ITFLDTP   63 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSS--------TTCCCCEEEETTEE--EEESCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCccccCCCCcee--------EeeeEEEEEeCCce--EEEEECC
Confidence            57999999999999999999999999998888888        44544556667764  5699975

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.94  E-value=2e-06  Score=73.62  Aligned_cols=56  Identities=14%  Similarity=0.111  Sum_probs=44.6

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++|+|||||+++++...+...+.|+++        .++....+.+++  ..++|||++
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t--------~~~~~~~~~~~~--~~~~l~Dt~   62 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVT--------VEKKEGEFEYNG--EKFKVVDLP   62 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSC--------CEEEEEEEEETT--EEEEEEECC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCccccCCCCee--------ccceEEEEEeCC--cEEEEEECC
Confidence            58999999999999999999998777666667777        455545555665  678999975

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.93  E-value=1.7e-06  Score=73.65  Aligned_cols=55  Identities=20%  Similarity=0.309  Sum_probs=43.7

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      ..+|++++|++++|||||+++++.+.| ..+.||+|        ...  ..+.+++  +.+.|||++-
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~--------~~~--~~~~~~~--~~~~i~Dt~G   71 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--------FNV--ETLSYKN--LKLNVWDLGG   71 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT--------CCE--EEEEETT--EEEEEEEEC-
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc--------cce--EEEEECC--EEEEEEECCC
Confidence            458999999999999999999999988 67889999        222  3344444  8899999863

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=97.92  E-value=9.8e-07  Score=83.15  Aligned_cols=51  Identities=22%  Similarity=0.209  Sum_probs=39.0

Q ss_pred             EEEEEccCccccceeeEEeeeCcccc---cccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHE---YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~---~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      |++++|++|||||||+.++..+.+..   .+.||+|        ++|.  .  + +..++|+|||+|
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig--------~~~~--~--v-~~~v~LqIWDTA   54 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSN--------PSLE--H--F-STLIDLAVMELP   54 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCS--------CCCE--E--E-CSSSCEEEEECC
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeee--------eeeE--E--E-ccEEEEEEEECC
Confidence            68999999999999998876554433   3789999        5553  1  2 345899999987

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.89  E-value=1.3e-06  Score=72.85  Aligned_cols=52  Identities=23%  Similarity=0.358  Sum_probs=40.7

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|++++|||+|+++++.+.|.. +.||+|        ...  +.+  +...+.++|||++
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--------~~~--~~~--~~~~~~~~i~Dt~   52 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--------FNV--ETV--EYKNISFTVWDVG   52 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--------CCE--EEE--ECSSCEEEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--------eeE--EEE--EECCEEEEEEEcC
Confidence            589999999999999999999888875 688998        211  222  2345789999985

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.88  E-value=1.7e-06  Score=74.10  Aligned_cols=54  Identities=15%  Similarity=0.241  Sum_probs=43.1

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|++++..+.| ..+.||+|        ..  .+.+.++  .+.++|||++
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g--------~~--~~~~~~~--~~~l~i~Dt~   68 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQG--------FN--IKSVQSQ--GFKLNVWDIG   68 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETT--------EE--EEEEEET--TEEEEEEECS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCC--------eE--EEEEEEC--CEEEEEEECC
Confidence            358999999999999999999998865 45789999        32  2455555  4789999986

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.88  E-value=3.3e-06  Score=72.20  Aligned_cols=54  Identities=19%  Similarity=0.295  Sum_probs=43.9

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++++.+. ...+.||+|        ...  +.+.++  .+.++|||++
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--------~~~--~~~~~~--~~~~~~~Dt~   70 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--------FNI--KTLEHR--GFKLNIWDVG   70 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--------EEE--EEEEET--TEEEEEEEEC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--------cce--EEEEEC--CEEEEEEECC
Confidence            45899999999999999999999888 778999998        332  345454  4788999985

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.87  E-value=1.1e-06  Score=76.34  Aligned_cols=59  Identities=15%  Similarity=0.011  Sum_probs=40.7

Q ss_pred             ccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceee--e-CCeEEEEEehhhH
Q psy18160        293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKN--R-LNNNVPITFVWVI  362 (373)
Q Consensus       293 ~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~--v-~~~~~~l~iw~~~  362 (373)
                      .+...+|++++|++++|||+|++++. +.|...  +|+|.+        +..+.+.  + ++..+.++|||++
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~-~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~l~i~Dt~   77 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVF-HKMSPN--ETLFLE--------STNKIYKDDISNSSFVNFQIWDFP   77 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHH-SCCCGG--GGGGCC--------CCCSCEEEEECCTTSCCEEEEECC
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHH-hcCCCc--ceeeec--------cccceeeeeccCCCeeEEEEEECC
Confidence            34557899999999999999988554 455544  678844        4333333  2 3788999999986

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.87  E-value=2.6e-06  Score=73.68  Aligned_cols=53  Identities=19%  Similarity=0.129  Sum_probs=43.8

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||||++++..+.|. .|.||+|        .+  ...+.+++  +.++|||++
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~--------~~--~~~~~~~~--~~~~i~Dt~   75 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWH--------PT--SEELAIGN--IKFTTFDLG   75 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCS--------CE--EEEEEETT--EEEEEEECC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCC--------CC--eEEEEECC--EEEEEEECC
Confidence            479999999999999999999998885 5789998        33  25666777  889999985

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.86  E-value=2.5e-06  Score=78.49  Aligned_cols=60  Identities=22%  Similarity=0.275  Sum_probs=41.3

Q ss_pred             ccceEEEEEccCccccceeeEE-eeeCcccccc-------cCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLR-FVRGQFHEYQ-------ESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~-~~~~~f~~~~-------~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...++++++|.+|+|||||+++ +..+.|...|       .+|++        +++....+..+|..+.|.|||++
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~liDTp   73 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQ--------VEQSKVLIKEGGVQLLLTIVDTP   73 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CC--------CEEEEEEECC--CCEEEEEEECC
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceE--------EEEEEEEEecCCeEEEEEEEECC
Confidence            3568999999999999999999 4456677777       78998        66665666678889999999986

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.86  E-value=2.9e-06  Score=71.17  Aligned_cols=53  Identities=21%  Similarity=0.322  Sum_probs=42.8

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+++++.+.|. .+.||+|        ..+  +.+.++  .+.+.|||++
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--------~~~--~~~~~~--~~~~~~~Dt~   59 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--------FNV--ETVTYK--NLKFQVWDLG   59 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS--------EEE--EEEEET--TEEEEEEEEC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCc--------cce--EEEEEC--CEEEEEEECC
Confidence            489999999999999999999998886 4788998        333  344455  5789999975

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.83  E-value=2.9e-06  Score=73.44  Aligned_cols=54  Identities=24%  Similarity=0.343  Sum_probs=42.8

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++++.+.|.. +.||+|        ...  +.+..  ..+.+.|||++
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--------~~~--~~~~~--~~~~~~i~Dt~   81 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--------FNV--ETVEY--KNICFTVWDVG   81 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--------EEE--EEEEE--TTEEEEEEECC
T ss_pred             CccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--------eeE--EEEEE--CCEEEEEEECC
Confidence            35899999999999999999999998874 688998        222  33333  34889999986

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=97.81  E-value=4.5e-06  Score=78.20  Aligned_cols=55  Identities=27%  Similarity=0.286  Sum_probs=44.5

Q ss_pred             ceEEEEEccCccccceeeEEeeeC--cccc-cccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRG--QFHE-YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~--~f~~-~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+++++.+  .+.. .+.+|++        .++.  .+.+++ .+.++|||++
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~--------~~~~--~~~~~~-~~~l~i~Dt~   60 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID--------VEHS--HLRFLG-NMTLNLWDCG   60 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCS--------EEEE--EEEETT-TEEEEEEEEC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccc--------eEEE--EEEeCC-ceEEEEEECC
Confidence            589999999999999999998877  5553 6899999        6664  344455 7899999985

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=97.79  E-value=3.5e-06  Score=72.34  Aligned_cols=54  Identities=20%  Similarity=0.329  Sum_probs=42.6

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|++++..+.|.. +.||+|        ...  +.+.++  .+.++|||++
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--------~~~--~~~~~~--~~~~~~~Dt~   74 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--------VNL--ETLQYK--NISFEVWDLG   74 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--------CCE--EEEEET--TEEEEEEEEC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--------eEE--EEEEEC--CEEEEEEECC
Confidence            35899999999999999999999988865 788998        222  334444  5788999975

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=97.63  E-value=6.1e-06  Score=83.29  Aligned_cols=68  Identities=16%  Similarity=0.199  Sum_probs=39.1

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...+|++++|.+++|||||+++++.+.|...+.||+|.++.++..-+...-.+..++..+.+.|||++
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~  106 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFG  106 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECC
Confidence            34689999999999999999999999999999999995444322000001112234568999999986

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=97.57  E-value=1.4e-05  Score=75.59  Aligned_cols=54  Identities=22%  Similarity=0.334  Sum_probs=43.5

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||+|+++|..+.|...+ ||++        .++.  .  ++...+.++|||++
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~--------~~~~--~--~~~~~~~l~i~Dt~  217 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--------FNVE--T--VEYKNISFTVWDVG  217 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETT--------EEEE--E--EEETTEEEEEEECC
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccc--------eEEE--E--EecCcEEEEEEECC
Confidence            4589999999999999999999999987765 7998        4442  2  33355789999986

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.55  E-value=8.8e-06  Score=70.00  Aligned_cols=57  Identities=23%  Similarity=0.158  Sum_probs=33.5

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      ..+|++++|++|+|||||+++++.+.|...+.++.|.++.        .....+++   .+.|||++-
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~--------~~~~~~~~---~~~l~Dt~G   78 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT--------LNFYIIND---ELHFVDVPG   78 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CC--------EEEEEETT---TEEEEECCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceee--------EEEEEECC---cEEEEECCC
Confidence            3589999999999999999999999888888888884333        22223344   589999863

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.51  E-value=1.9e-05  Score=66.95  Aligned_cols=55  Identities=15%  Similarity=0.042  Sum_probs=40.7

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcc--cccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQF--HEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++|+|||||+++++...+  ...+. ++.        .++....+.+++.+  ++|||++
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~-~~t--------~~~~~~~~~~~~~~--~~l~Dt~   60 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIA-GTT--------RDVLREHIHIDGMP--LHIIDTA   60 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSST-TCC--------CSCEEEEEEETTEE--EEEEECC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCC-Cce--------eceeeEEEEECCeE--EEEEECC
Confidence            47999999999999999999997764  23333 334        34555667778754  7899975

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.50  E-value=7e-06  Score=78.99  Aligned_cols=135  Identities=12%  Similarity=0.052  Sum_probs=75.8

Q ss_pred             EEEEEcC---ChhHHHHHhhhC-----c-CcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc--------hhh
Q psy18160         49 AQIWLKD---RVDCMTQIVINV-----V-FYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA--------PMY  110 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~-----~-~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~--------~~~  110 (373)
                      .++++|.   |||||+|++++.     . .... ..|.+.....+.+++.   +.++||||......+.        ..+
T Consensus       164 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~~  240 (369)
T 3ec1_A          164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKII  240 (369)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred             cEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence            5778886   999999999986     2 2222 3333333344555433   6899999964332111        112


Q ss_pred             c--cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160        111 Y--RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY  188 (373)
Q Consensus       111 ~--~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~  188 (373)
                      +  +..+.++++.+.....-+..+.+ ++                        .....+.|++++.||.|....  ....
T Consensus       241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-l~------------------------~l~~~~~~~~~v~~k~d~~~~--~~~~  293 (369)
T 3ec1_A          241 TPKREIHPRVYQLNEGQTLFFGGLAR-LD------------------------YIKGGRRSFVCYMANELTVHR--TKLE  293 (369)
T ss_dssp             SCSSCCCCEEEEECTTEEEEETTTEE-EE------------------------EEESSSEEEEEEECTTSCEEE--EEGG
T ss_pred             hcccccCceEEEEcCCceEEECCEEE-EE------------------------EccCCCceEEEEecCCccccc--ccHH
Confidence            2  67899999998742211001100 00                        012346899999999998653  1222


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCH
Q psy18160        189 SEGEAYAEENGLLFMETSAKTAMNV  213 (373)
Q Consensus       189 ~e~~~~~~~~~~~~~evSak~~~gI  213 (373)
                      .....+.+..|......++....++
T Consensus       294 ~~~~~~~~~~g~~l~p~~~~~~~~~  318 (369)
T 3ec1_A          294 KADSLYANQLGELLSPPSKRYAAEF  318 (369)
T ss_dssp             GHHHHHHHHBTTTBCSSCGGGTTTC
T ss_pred             HHHHHHHHhcCCccCCCCchhhhhc
Confidence            2233455666766666666544443

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.44  E-value=2.5e-05  Score=64.61  Aligned_cols=56  Identities=20%  Similarity=0.146  Sum_probs=36.5

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccc-cccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHE-YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~-~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      .|++++|++++|||+|++++..+.+.. ...+++.        .++....+.+++.  .+.|||++-
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~l~Dt~G   58 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVT--------RDLKEGVVETDRG--RFLLVDTGG   58 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-------------------CCEEEEEEETTE--EEEEEECGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCce--------ecceEEEEEeCCc--eEEEEECCC
Confidence            589999999999999999999877532 2223333        3444455556665  678999863

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.40  E-value=1.9e-05  Score=67.39  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=30.9

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCcc
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG  331 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig  331 (373)
                      +|++++|++++|||||+++++.+.|...+.|++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t   35 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT   35 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc
Confidence            6899999999999999999999999888888665

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.40  E-value=8.3e-05  Score=74.16  Aligned_cols=101  Identities=12%  Similarity=0.087  Sum_probs=60.7

Q ss_pred             EEEEEEeCCCcccccc-cchh---h--ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhc
Q psy18160         90 IRFEIWDTAGQERYHT-LAPM---Y--YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRM  163 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~-l~~~---~--~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      +.+.|+||+|...... +...   .  +..+|.+++|+|.......   ......+..                      
T Consensus       184 ~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~----------------------  238 (504)
T 2j37_W          184 FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD----------------------  238 (504)
T ss_dssp             CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH----------------------
T ss_pred             CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh----------------------
Confidence            4688999999753221 1111   1  2278999999999775431   111222222                      


Q ss_pred             CCCCCeE-EEEEeCCCCCCCCcccCHHHHHHHHHHcCCeE------------------EEEcCCCCCC-HHHHHHHHHHH
Q psy18160        164 APPNIVI-ALAGNKADLPTSRRCVEYSEGEAYAEENGLLF------------------METSAKTAMN-VNEIFVEIAKK  223 (373)
Q Consensus       164 ~~~~~pi-ilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~------------------~evSak~~~g-I~~lf~~L~~~  223 (373)
                         .+|+ .+|.||.|....   .  ..+.......+.|+                  +.+|+..|.| ++++++++.+.
T Consensus       239 ---~~~i~gvVlNK~D~~~~---~--g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          239 ---KVDVASVIVTKLDGHAK---G--GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             ---HHCCCCEEEECTTSCCC---C--THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ---hcCceEEEEeCCccccc---h--HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence               1464 899999998642   1  11223334445443                  3468999999 99999888654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.35  E-value=4.7e-05  Score=67.56  Aligned_cols=58  Identities=16%  Similarity=0.051  Sum_probs=37.9

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      ..+|++++|++++|||||+++++.+.|.....+...        .++....+..+  .+.+.|||++-
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t--------~~~~~~~~~~~--~~~~~l~DtpG   85 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTT--------KNLYVGHFDHK--LNKYQIIDTPG   85 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-------------CEEEEEEEET--TEEEEEEECTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcc--------eeeeeeeeecC--CCeEEEEECCC
Confidence            458999999999999999999999887533222211        12221222233  36799999863

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.35  E-value=3.6e-05  Score=73.72  Aligned_cols=62  Identities=23%  Similarity=0.253  Sum_probs=38.3

Q ss_pred             ccceEEEEEccCccccceeeEEe-eeCccccccc--------CCccccccccceeeeecceeeeCCeEEEEEehhhHHH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRF-VRGQFHEYQE--------STIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMM  364 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~-~~~~f~~~~~--------~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~~  364 (373)
                      ...++++++|++|+|||||++++ ..+.|...+.        +|++        +++....+..++..+.|.|||++-.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~--------~~~~~~~~~~~~~~~~l~i~DTpG~  105 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQ--------IEASTVEIEERGVKLRLTVVDTPGY  105 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEE--------EEEEEEC----CEEEEEEEEC----
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCcee--------EEEEEEEeecCCcccceEEEEeccc
Confidence            45689999999999999999994 4566666553        6777        5554444556788999999998754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.34  E-value=3.9e-05  Score=68.76  Aligned_cols=61  Identities=13%  Similarity=0.083  Sum_probs=39.2

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      ...+|++++|.+|+|||||++++++..+.....++.+++      .++....+.+++.  .+.|||++-
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t------~~~~~~~~~~~~~--~i~liDTpG   87 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSIT------KKCEKRSSSWKET--ELVVVDTPG   87 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------C------CSCEEEEEEETTE--EEEEEECCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCcee------eeEEEEEEEeCCc--eEEEEECCC
Confidence            346899999999999999999999888766655532211      2232234445564  568999863

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.27  E-value=9.6e-06  Score=77.98  Aligned_cols=129  Identities=9%  Similarity=0.055  Sum_probs=70.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcC------c--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc----hh---
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYP------Y--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA----PM---  109 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~------~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~----~~---  109 (373)
                      ..++++|.   |||||+|++++.....      .  ..|.+.....+.+++.   +.++||||......+.    ..   
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            35778886   9999999999863211      1  3444443444555443   7899999974332211    11   


Q ss_pred             -h--ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160        110 -Y--YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV  186 (373)
Q Consensus       110 -~--~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v  186 (373)
                       +  .+..+.+++++|.....-+..+.+    +                  .   .......|++++.||.|....   .
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~------------------d---~l~~~~~~~~~v~nk~d~~~~---~  289 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLAR----F------------------D---YVSGGRRAFTCHFSNRLTIHR---T  289 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTEE----E------------------E---EEESSSEEEEEEECTTSCEEE---E
T ss_pred             HhccccccCceEEEEcCCCEEEEcceEE----E------------------E---EecCCCceEEEEecCcccccc---c
Confidence             1  256788888887632110001000    0                  0   012346899999999998653   2


Q ss_pred             CHHHHHH-HHHHcCCeEEEEcC
Q psy18160        187 EYSEGEA-YAEENGLLFMETSA  207 (373)
Q Consensus       187 ~~~e~~~-~~~~~~~~~~evSa  207 (373)
                      ..+.+.+ +.+..|......++
T Consensus       290 ~~~~~~~~~~~~~g~~l~p~~~  311 (368)
T 3h2y_A          290 KLEKADELYKNHAGDLLSPPTP  311 (368)
T ss_dssp             EHHHHHHHHHHHBTTTBCSSCH
T ss_pred             cHHHHHHHHHHHhCCccCCCch
Confidence            3344444 44556655544444

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.22  E-value=6.4e-05  Score=68.80  Aligned_cols=56  Identities=13%  Similarity=0.072  Sum_probs=44.4

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++|+|||||++++++..+...+.|+++        +++....+..++..  +.|||+.
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t--------~~~~~~~~~~~~~~--~~l~Dtp   58 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVT--------VEKKEGIMEYREKE--FLVVDLP   58 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSS--------CEEEEEEEEETTEE--EEEEECC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeE--------EEeeEEEEEECCce--EEEEeCC
Confidence            47899999999999999999998888666777777        55554555566654  8899974

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.22  E-value=0.00028  Score=68.76  Aligned_cols=54  Identities=17%  Similarity=0.263  Sum_probs=30.9

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEEC--CEEEEEEEEeCCCc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLD--DVTIRFEIWDTAGQ  100 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~--~~~v~l~i~Dt~G~  100 (373)
                      .+.++++|.   |||||++.+++..+...     +.+.......+...  +-...+.++|++|.
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~  105 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF  105 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence            345888886   99999999998754332     12222211112222  22336889999775

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=97.22  E-value=7.3e-05  Score=68.11  Aligned_cols=57  Identities=16%  Similarity=0.070  Sum_probs=40.0

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++|+|||||++++++..+.....|.+.        ++.....+..  ....+.|||++
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~t--------v~~~~~~~~~--~~~~~~l~Dtp   60 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVT--------VEKKEGVFTY--KGYTINLIDLP   60 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSC--------CEEEEEEEEE--TTEEEEEEECC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCce--------EEEEEEEEEE--CCeEEEEEECC
Confidence            358999999999999999999998777544445444        3332222323  34789999974

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.21  E-value=1.6e-05  Score=70.31  Aligned_cols=67  Identities=12%  Similarity=0.163  Sum_probs=48.1

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeee------cceeeeC-CeEEEEEehhhHHHH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFS------MPTKNRL-NNNVPITFVWVIMMI  365 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~------~~~~~v~-~~~~~l~iw~~~~~~  365 (373)
                      .++++++|.+|+|||||+++|+...|...+.+||+.+|...  .|..      .+.+.++ +..+.+++||+.+.+
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~--~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  111 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAK--FDAERMEKHGAKVVPLNTGKECHLDAHLVGHAL  111 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTH--HHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCC--ccHHHHHhcCCcEEEecCCceEeccHHHHHHHH
Confidence            47999999999999999999998888888889999555410  0100      2344454 555678899985543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.20  E-value=0.0043  Score=60.23  Aligned_cols=151  Identities=11%  Similarity=0.065  Sum_probs=81.1

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---cee-eeEEEEEEEE-CCEEEEEEEEeCCCcccccccchhh-----ccCC
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFS-AAFITQTVCL-DDVTIRFEIWDTAGQERYHTLAPMY-----YRNA  114 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig-~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~~~l~~~~-----~~~a  114 (373)
                      ..++++|.   |||||+|.+.+-.....   +++ .+.....+.+ ....-.+.+||++|..........+     +...
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~  149 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY  149 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence            47888887   99999999998533222   111 1110000111 1111147889998853222112222     3344


Q ss_pred             cEEEEEEECC--CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC------CCccc
Q psy18160        115 QAAIIVYDIT--NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT------SRRCV  186 (373)
Q Consensus       115 d~iilv~D~~--~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~------~~~~v  186 (373)
                      +.+++ +|..  .+....    +...+..                        .+.|+++|.||.|+.-      .....
T Consensus       150 ~~~~~-lS~G~~~kqrv~----la~aL~~------------------------~~~p~~lV~tkpdlllLDEPtsgLD~~  200 (413)
T 1tq4_A          150 DFFII-ISATRFKKNDID----IAKAISM------------------------MKKEFYFVRTKVDSDITNEADGEPQTF  200 (413)
T ss_dssp             SEEEE-EESSCCCHHHHH----HHHHHHH------------------------TTCEEEEEECCHHHHHHHHHTTCCTTC
T ss_pred             CCeEE-eCCCCccHHHHH----HHHHHHh------------------------cCCCeEEEEecCcccccCcccccCCHH
Confidence            55555 7775  322111    2222222                        3579999999999630      00112


Q ss_pred             CHHHH----HHHH----HHcC---CeEEEEcC--CCCCCHHHHHHHHHHHcchh
Q psy18160        187 EYSEG----EAYA----EENG---LLFMETSA--KTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       187 ~~~e~----~~~~----~~~~---~~~~evSa--k~~~gI~~lf~~L~~~i~~~  227 (373)
                      ..++.    .++.    .+.+   -..+.+|+  .++.|++++.+.+.+.+...
T Consensus       201 ~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          201 DKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence            23332    2332    1222   25788999  67778999999999888653

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.17  E-value=2.2e-05  Score=68.92  Aligned_cols=39  Identities=21%  Similarity=0.298  Sum_probs=32.6

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccc---cccCCccccc
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHE---YQESTIGGEC  334 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~---~~~~Tig~~~  334 (373)
                      ..+|++++|++|+|||+|++++..+.|..   .+.||++.+|
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~   52 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY   52 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe
Confidence            45899999999999999999999988765   4778887443

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=97.11  E-value=8.5e-05  Score=67.61  Aligned_cols=55  Identities=11%  Similarity=0.026  Sum_probs=42.5

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+++++|.+|+|||||++++++..+.....|++.        +++....+..++.  .+.|||++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~T--------v~~~~~~~~~~~~--~~~lvDtp   56 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVT--------VEKKTGEFLLGEH--LIEITDLP   56 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSS--------SEEEEEEEEETTE--EEEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCce--------EEEEEEEEEECCe--EEEEEeCC
Confidence            4789999999999999999998876555556666        4555555666665  78899975

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.06  E-value=0.00013  Score=62.27  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=30.3

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCcccc
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE  333 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~  333 (373)
                      ..+|++++|++++|||||+++++.+. ...+.+|.|.+
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t   58 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKT   58 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCc
Confidence            45799999999999999999999887 34566777733

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.05  E-value=2.4e-05  Score=67.20  Aligned_cols=36  Identities=22%  Similarity=0.298  Sum_probs=25.2

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccc---cccCCcc
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHE---YQESTIG  331 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~---~~~~Tig  331 (373)
                      ..++++++|++|+|||||++++..+.|..   .+.||++
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~   85 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA   85 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSSCC-----------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee
Confidence            35799999999999999999999887755   4666776

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.00  E-value=7.4e-05  Score=68.68  Aligned_cols=54  Identities=15%  Similarity=0.061  Sum_probs=37.6

Q ss_pred             ceEEEEEccCccccceeeEEeeeCc-ccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQ-FHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~-f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++|+|||||++++++.. +...| |  |++        +..+...++. .+.++|||++
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~-p--g~t--------v~~~~~~~~~-~~~l~l~Dtp   57 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNW-P--GVT--------VERKSGLVKK-NKDLEIQDLP   57 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSS-S--CCC--------CSCEEEECTT-CTTEEEEECC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCC-C--CCc--------EEEEEEEEec-CCeEEEEECC
Confidence            4799999999999999999999765 44444 3  322        2223333454 6678999975

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.97  E-value=0.00017  Score=65.38  Aligned_cols=58  Identities=21%  Similarity=0.243  Sum_probs=41.6

Q ss_pred             cceEEEEEccCccccceeeEEeeeCc-ccccccCC-ccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQ-FHEYQEST-IGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~-f~~~~~~T-ig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      ..++++++|.+|+|||||+++++... |...+.++ +.        .+.....+..++.  .+.|||+.-
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t--------~~~~~~~~~~~~~--~i~iiDTpG   80 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLT--------KTCSKSQGSWGNR--EIVIIDTPD   80 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCC--------CSCEEEEEEETTE--EEEEEECCG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcee--------eeeEEEEEEeCCC--EEEEEECcC
Confidence            45899999999999999999999876 66666665 44        2232234445554  578898763

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.93  E-value=0.00011  Score=63.88  Aligned_cols=37  Identities=22%  Similarity=0.225  Sum_probs=22.3

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCcccc
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE  333 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~  333 (373)
                      ..+++++|++|+|||||++++++..|...+.||.|..
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~   62 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRT   62 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-------------
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccc
Confidence            4689999999999999999999888777778888843

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.91  E-value=7.9e-05  Score=65.49  Aligned_cols=58  Identities=17%  Similarity=0.108  Sum_probs=38.2

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeC-CeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRL-NNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~-~~~~~l~iw~~~  362 (373)
                      .++++++|.+|+|||||+++++.+.+.....++.|.+..    .    ....+. .....+.|||++
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~----~----~~~~~~~~~~~~~~l~Dtp   87 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQH----I----NYFSVGPAAEPVAHLVDLP   87 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCC----E----EEEEESCTTSCSEEEEECC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccc----e----EEEEecCCCCCcEEEEcCC
Confidence            479999999999999999999988643333344442111    1    112223 344678899986

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.89  E-value=0.00018  Score=66.09  Aligned_cols=56  Identities=13%  Similarity=0.146  Sum_probs=41.9

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .++++++|.+|+|||||++++++..+...+.|++.        ++.....+..++.  .+.|||++
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t--------~~~~~~~~~~~~~--~~~liDtp   58 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVT--------VERKEGQFSTTDH--QVTLVDLP   58 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSS--------SEEEEEEEECSSC--EEEEEECC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCee--------EEEEEEEEEeCCC--ceEEEECc
Confidence            47999999999999999999998877655566665        4444455555554  46679975

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.87  E-value=0.00012  Score=68.19  Aligned_cols=62  Identities=24%  Similarity=0.261  Sum_probs=32.5

Q ss_pred             ccceEEEEEccCccccceeeEEeeeC-cccccc--------cCCccccccccceeeeecceeeeCCeEEEEEehhhHHH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRG-QFHEYQ--------ESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMM  364 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~-~f~~~~--------~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~~  364 (373)
                      +..++++++|++|+|||||++++... .|...+        .+|++        .++....+..++..+.|++||.+.+
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~--------~~~~~~~~q~~~~~~~ltv~Dt~g~   86 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQ--------IEASTVEIEERGVKLRLTVVDTPGY   86 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC--------------------------------CEEEEC---CCEEEEEEEEC--
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcce--------EeeEEEEecCCCcccCcchhhhhhh
Confidence            45689999999999999999996653 565544        23333        2221122234677889999999864

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.77  E-value=0.0003  Score=63.96  Aligned_cols=56  Identities=20%  Similarity=0.119  Sum_probs=38.3

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcc--cccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQF--HEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..++++++|.+++|||||+++++...+  ...+.+|.-         +.....+..++.  .+.|||++
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~---------~~~~~~~~~~~~--~l~liDTp   92 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGL---------RPVMVSRTMGGF--TINIIDTP   92 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CC---------CCEEEEEEETTE--EEEEEECC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcce---------eeEEEEEEECCe--eEEEEECC
Confidence            358999999999999999999998764  344444321         122233344554  88999975

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.65  E-value=0.00026  Score=64.66  Aligned_cols=58  Identities=14%  Similarity=0.140  Sum_probs=38.6

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..++++++|.+|+|||||+++++...+.. ..++.|.++.        ...+.++.....+.|||++
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~-~~~~~~~t~~--------~~~~~~~~~~~~l~iiDTp   95 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVS-ISPFQSEGPR--------PVMVSRSRAGFTLNIIDTP   95 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSC-CCSSSCCCSS--------CEEEEEEETTEEEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCccee--------eEEEEEeeCCeEEEEEECC
Confidence            35899999999999999999999876532 1223332222        1222334445679999975

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=96.65  E-value=0.00047  Score=68.34  Aligned_cols=56  Identities=13%  Similarity=0.048  Sum_probs=32.1

Q ss_pred             ceEEEEEccCccccceeeEEeeeCc--ccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQ--FHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~--f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      .+|++++|.+|+|||||+++++...  +...+.+| .        .++....+.++|.  .+.|||++-
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gt-T--------~d~~~~~i~~~g~--~l~liDT~G  290 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGT-T--------RDYIEECFIHDKT--MFRLTDTAG  290 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC---------------------------CEEEEETTE--EEEEEC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-e--------EEEEEEEEEECCe--EEEEEECCC
Confidence            4889999999999999999999875  34444433 3        4555566677774  689999874

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=96.59  E-value=0.00075  Score=65.88  Aligned_cols=59  Identities=19%  Similarity=0.107  Sum_probs=36.4

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCccc-ccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFH-EYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~-~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ...++++++|..++|||||+++++...+. ....+.+.        .+...+.+.+++.. .+.|||++
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT--------~d~~~~~~~~~~~~-~l~liDTp   91 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTT--------TDPVYKSMELHPIG-PVTLVDTP   91 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC---------------------CCCCEEEEEETTTE-EEEEEECS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCee--------eeeEEEEEEECCCC-eEEEEECc
Confidence            34689999999999999999999988773 22222233        33434555555542 78999986

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.58  E-value=0.0006  Score=62.19  Aligned_cols=52  Identities=12%  Similarity=-0.054  Sum_probs=33.2

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCccc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQER  102 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~  102 (373)
                      ++++++|.   |||||+|++.+......  ++|.+.....+.++.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            58888887   99999999998876544  555544333344433   478999999754

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.54  E-value=0.00054  Score=66.74  Aligned_cols=63  Identities=19%  Similarity=0.201  Sum_probs=38.8

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCccc-ccc-------cCCccccccccceeeeecceeeeCCeEEEEEehhhHHH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFH-EYQ-------ESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMM  364 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~-~~~-------~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~~  364 (373)
                      ++..++++++|++|+|||||++.+++..+. ..+       .+|++        .++....+..++....+.+||.+.+
T Consensus        28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~--------~~~i~~v~q~~~~~~~Ltv~Dt~g~   98 (418)
T 2qag_C           28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQ--------VEQSKVLIKEGGVQLLLTIVDTPGF   98 (418)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCE--------EEEEECC------CEEEEEEECC--
T ss_pred             cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcccee--------eeeEEEEEecCCcccceeeeechhh
Confidence            345689999999999999999999887663 222       34444        3433233344567789999999854

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.45  E-value=0.01  Score=54.21  Aligned_cols=22  Identities=0%  Similarity=0.037  Sum_probs=18.3

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcC
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVF   69 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~   69 (373)
                      +.++++|.   |||||++.+++...
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC
Confidence            56888886   99999999997643

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=96.38  E-value=0.00046  Score=68.51  Aligned_cols=55  Identities=18%  Similarity=0.113  Sum_probs=42.0

Q ss_pred             eEEEEEccCccccceeeEEeeeCcc--cccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQF--HEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      +|++++|.+++|||||+++++...+  ...+..|.         .|+....+.++|.  .+.|||++-
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT---------~d~~~~~i~~~g~--~~~l~DTaG  300 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTT---------RDVISEEIVIRGI--LFRIVDTAG  300 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCS---------SCSCCEEEEETTE--EEEEEESSC
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCee---------eeeEEEEEecCCe--EEEEEECCC
Confidence            7999999999999999999997753  45555443         3555566777775  478999873

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.37  E-value=0.0029  Score=58.26  Aligned_cols=53  Identities=11%  Similarity=0.020  Sum_probs=33.0

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcc
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQE  101 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e  101 (373)
                      ..++++++|.   |||||+|++.+......  +.|.+.....+.++.   .+.+|||||.-
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            4578899997   99999999998764443  445444333444443   47899999964

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=96.21  E-value=0.00057  Score=67.51  Aligned_cols=56  Identities=14%  Similarity=0.038  Sum_probs=39.7

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcc--cccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQF--HEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      .+|++++|.+|+|||||+++++...+  ...+ |++.        .++....+.++|.+  +.|||++-
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~-~gtT--------~d~~~~~i~~~g~~--v~liDT~G  281 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDL-PGTT--------RDVVESQLVVGGIP--VQVLDTAG  281 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCC-TTCC--------HHHHHHEEEETTEE--EEECC---
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCC-CCee--------EEEEEEEEEECCEE--EEEEECCc
Confidence            47899999999999999999997654  3344 4444        45555666777754  58999875

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.02  E-value=0.00079  Score=64.26  Aligned_cols=57  Identities=19%  Similarity=0.201  Sum_probs=37.6

Q ss_pred             eEEEEEccCccccceeeEEeeeCccc-ccc-cCCccccccccceeeeecceeeeCCe---------------EEEEEehh
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFH-EYQ-ESTIGGECQSSHSISFSMPTKNRLNN---------------NVPITFVW  360 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~-~~~-~~Tig~~~~~~~~~~~~~~~~~v~~~---------------~~~l~iw~  360 (373)
                      +++.++|.+++|||||+++++...+. ..| .+|++.        +  ...+.+++.               +..++|||
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p--------~--~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvD   72 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP--------N--TGVVPMPDPRLDALAEIVKPERILPTTMEFVD   72 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC--------C--SSEEECCCHHHHHHHHHHCCSEEECCEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc--------e--EEEEecCCcccceeeeeecccceeeeEEEEEE
Confidence            68999999999999999999987643 233 235551        1  123444553               26899999


Q ss_pred             hHHH
Q psy18160        361 VIMM  364 (373)
Q Consensus       361 ~~~~  364 (373)
                      ++-.
T Consensus        73 tpGl   76 (363)
T 1jal_A           73 IAGL   76 (363)
T ss_dssp             CCSC
T ss_pred             CCCC
Confidence            9744

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=95.88  E-value=0.00086  Score=64.71  Aligned_cols=61  Identities=15%  Similarity=0.090  Sum_probs=34.3

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCe---------------EEEEEehhh
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNN---------------NVPITFVWV  361 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~---------------~~~l~iw~~  361 (373)
                      .+++.++|.+|+|||||+++++...+.....|+..        ++.....+.+.+.               ...++|||+
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tT--------i~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDt   93 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCT--------IDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDI   93 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC---------------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEEC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccc--------cCceeEEEEECCccceeeccccCcccccccccEEEEC
Confidence            36899999999999999999998766433333333        2222234444443               346999999


Q ss_pred             HHHH
Q psy18160        362 IMMI  365 (373)
Q Consensus       362 ~~~~  365 (373)
                      +-+.
T Consensus        94 pGl~   97 (396)
T 2ohf_A           94 AGLV   97 (396)
T ss_dssp             CC--
T ss_pred             CCcc
Confidence            8554

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=95.88  E-value=0.0016  Score=60.63  Aligned_cols=55  Identities=18%  Similarity=0.122  Sum_probs=36.6

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccc-ccc-CCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHE-YQE-STIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~-~~~-~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+++++|.+|+|||||++++++..+.. ... .|..         +.. ..+ +.....++.|||++
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr---------~~i-~~i-~~~~~~~l~l~DTp   63 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR---------KRL-RGI-LTEGRRQIVFVDTP   63 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC---------SCE-EEE-EEETTEEEEEEECC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCcee---------EEE-EEE-EEeCCcEEEEecCc
Confidence            4679999999999999999999887742 222 2322         111 111 22345788999986

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.67  E-value=0.0063  Score=59.51  Aligned_cols=91  Identities=13%  Similarity=0.073  Sum_probs=53.5

Q ss_pred             EEEEEEeCCCcccccc-----cch-hhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhc
Q psy18160         90 IRFEIWDTAGQERYHT-----LAP-MYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRM  163 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~-----l~~-~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      +.+.|+||+|......     +.. .....+|.+++|.|.+.......   ....+..                      
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~----------------------  237 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKE----------------------  237 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHH----------------------
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHh----------------------
Confidence            5678999999533221     111 11235799999999876433222   2222222                      


Q ss_pred             CCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q psy18160        164 APPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVN  214 (373)
Q Consensus       164 ~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~  214 (373)
                        .-.+..||.||.|....     ...+.......+.|+..++.  |++++
T Consensus       238 --~~~i~gVIlTKlD~~~~-----gG~~ls~~~~~g~PI~fig~--Ge~vd  279 (443)
T 3dm5_A          238 --ATPIGSIIVTKLDGSAK-----GGGALSAVAATGAPIKFIGT--GEKID  279 (443)
T ss_dssp             --SCTTEEEEEECCSSCSS-----HHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred             --hCCCeEEEEECCCCccc-----ccHHHHHHHHHCCCEEEEEc--CCChH
Confidence              12245789999997542     33455566677888877775  55443

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=95.64  E-value=0.0018  Score=61.99  Aligned_cols=54  Identities=19%  Similarity=0.036  Sum_probs=35.1

Q ss_pred             eE-EEEEccCccccceeeEEeeeCcccc--cccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        298 YK-LVLLGESAVGKSSLVLRFVRGQFHE--YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       298 ~k-~~~iG~~~vGks~l~~~~~~~~f~~--~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      ++ ++++|.+|+|||||++++++..+..  ...+|+          |+....+.++|.  .+.+||.+-
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~----------d~~~~~i~~~g~--~v~l~DT~G  235 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTM----------SPKRYAIPINNR--KIMLVDTVG  235 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------C----------CSCEEEEEETTE--EEEEEECCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCccccc----------CCEEEEEEECCE--EEEEEeCCC
Confidence            44 8899999999999999999876632  233443          344466777884  568899753

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.32  E-value=0.0035  Score=58.40  Aligned_cols=28  Identities=21%  Similarity=0.324  Sum_probs=24.8

Q ss_pred             cceEEEEEccCccccceeeEEeeeCccc
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFH  323 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~  323 (373)
                      ..-++.++|.+|+|||||++++++..+.
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~   36 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLLGTKVS   36 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCcc
Confidence            4568999999999999999999988775

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=95.14  E-value=0.0049  Score=59.56  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=20.5

Q ss_pred             eEEEEEccCccccceeeEEeeeCc
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQ  321 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~  321 (373)
                      +|+.++|.+++|||||+++++...
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Confidence            478999999999999999998765

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=95.05  E-value=0.0013  Score=65.24  Aligned_cols=26  Identities=31%  Similarity=0.507  Sum_probs=22.8

Q ss_pred             ccceEEEEEccCccccceeeEEeeeC
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRG  320 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~  320 (373)
                      ...+|++++|.+++|||||+++++..
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~   56 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYD   56 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            34689999999999999999998754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=94.92  E-value=0.0024  Score=58.60  Aligned_cols=27  Identities=30%  Similarity=0.497  Sum_probs=24.6

Q ss_pred             ceEEEEEccCccccceeeEEeeeCccc
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFH  323 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~  323 (373)
                      ..+++++|++++|||||++++++..|.
T Consensus        26 ~~~i~vvG~~~~GKSSLln~l~g~~~~   52 (299)
T 2aka_B           26 LPQIAVVGGQSAGKSSVLENFVGRDFL   52 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence            468999999999999999999988874

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=94.84  E-value=0.0012  Score=65.26  Aligned_cols=94  Identities=10%  Similarity=0.016  Sum_probs=55.7

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcc--cccccc--------hhhc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQE--RYHTLA--------PMYY  111 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e--~~~~l~--------~~~~  111 (373)
                      ...++++|-   ||||+.+++...-....  |.+...........+......+||..|.+  +....+        ..++
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l  118 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFL  118 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777775   99999999986532211  22111000000011122335689999973  233333        5567


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHh
Q psy18160        112 RNAQAAIIVYDITNQDTFGRAKSWVKELQR  141 (373)
Q Consensus       112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~  141 (373)
                      ..+++.++|+|.++. +++....|+..+..
T Consensus       119 ~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~  147 (469)
T 1bif_A          119 SEEGGHVAVFDATNT-TRERRAMIFNFGEQ  147 (469)
T ss_dssp             HTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred             HhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence            678899999999987 56666777776655

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=94.79  E-value=0.011  Score=57.93  Aligned_cols=25  Identities=20%  Similarity=0.301  Sum_probs=21.7

Q ss_pred             ccceEEEEEccCccccceeeEEeee
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVR  319 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~  319 (373)
                      ...++++++|..++|||||+++++.
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~   39 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMY   39 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHH
Confidence            3468999999999999999999843

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=94.78  E-value=0.0011  Score=66.50  Aligned_cols=55  Identities=16%  Similarity=0.169  Sum_probs=42.0

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeee-CCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNR-LNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v-~~~~~~l~iw~~~  362 (373)
                      .+++++|.+++|||||++++....|...+.+++.        .++....+.. ++.  ++.|||+.
T Consensus         5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT--------~~i~~~~v~~~~g~--~i~~iDTP   60 (537)
T 3izy_P            5 PVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGIT--------QHIGAFLVSLPSGE--KITFLDTP   60 (537)
T ss_dssp             CBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBC--------CCTTSCCBCSSCSS--CCBCEECS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcccccCCcee--------EEEeEEEEEeCCCC--EEEEEECC
Confidence            5789999999999999999999988888888888        3443333333 233  67889974

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=94.74  E-value=0.0088  Score=57.88  Aligned_cols=42  Identities=17%  Similarity=0.211  Sum_probs=28.3

Q ss_pred             cceEEEEEccCccccceeeEEee---eCcccccccC--Ccccccccc
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFV---RGQFHEYQES--TIGGECQSS  337 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~---~~~f~~~~~~--Tig~~~~~~  337 (373)
                      ..++++++|..++|||||++++.   .+.+..++.+  |++..|...
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~   53 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADC   53 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEeccccc
Confidence            46899999999999999999997   3456666666  888655543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=94.69  E-value=0.0074  Score=57.30  Aligned_cols=55  Identities=18%  Similarity=0.083  Sum_probs=35.9

Q ss_pred             ceEEEEEccCccccceeeEEeeeCccccc-c-cCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEY-Q-ESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~-~-~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      .++++++|.+|+|||||++++....+... + ..|.+        ...  ..+..+  ...+.|||++-
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~--------~~~--~~~~~~--~~~~~l~Dt~G  223 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRG--------INV--GQFEDG--YFRYQIIDTPG  223 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSC--------EEE--EEEEET--TEEEEEEECTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeec--------eeE--EEEEec--CceEEEEeCCC
Confidence            46899999999999999999998765322 2 22332        111  122222  45789999763

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=94.67  E-value=0.025  Score=55.13  Aligned_cols=90  Identities=14%  Similarity=0.082  Sum_probs=53.8

Q ss_pred             EEEEEEeCCCccc--ccc-cch---hh--ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhh
Q psy18160         90 IRFEIWDTAGQER--YHT-LAP---MY--YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQ  161 (373)
Q Consensus        90 v~l~i~Dt~G~e~--~~~-l~~---~~--~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                      +.+.|+||+|...  ... +..   ..  ....|.+++|.|.........   ....+..                    
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~--------------------  236 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQ--------------------  236 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHH--------------------
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhc--------------------
Confidence            4567999999643  111 111   11  125689999999876433222   2222222                    


Q ss_pred             hcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q psy18160        162 RMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNV  213 (373)
Q Consensus       162 ~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI  213 (373)
                          .-.+..||.||.|...     ....+.......+.|+..++.  |+++
T Consensus       237 ----~~~~~gVIlTKlD~~a-----~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          237 ----ASPIGSVIITKMDGTA-----KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ----HCSSEEEEEECGGGCS-----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ----ccCCcEEEEecccccc-----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence                1135678999999743     234566667778999888886  6555

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=94.48  E-value=0.0015  Score=62.51  Aligned_cols=69  Identities=16%  Similarity=0.133  Sum_probs=38.9

Q ss_pred             eEEEEEccCccccceeeEEeeeCcc-cc-----cccCCccccccccceeeeecceeeeCC-----eEEEEEehhhHHHHh
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQF-HE-----YQESTIGGECQSSHSISFSMPTKNRLN-----NNVPITFVWVIMMIF  366 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f-~~-----~~~~Tig~~~~~~~~~~~~~~~~~v~~-----~~~~l~iw~~~~~~~  366 (373)
                      +++.++|.+|+|||||+++++.... ..     ...|++|.......-+++..+.+..++     ....++|||++-.+-
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5789999999999999999886532 12     245666621000000001011111222     356899999985543

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=94.39  E-value=0.0043  Score=58.88  Aligned_cols=26  Identities=31%  Similarity=0.537  Sum_probs=23.9

Q ss_pred             eEEEEEccCccccceeeEEeeeCccc
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFH  323 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~  323 (373)
                      .+++++|++++|||||++++++..|.
T Consensus        32 ~~I~vvG~~~~GKSSLln~L~g~~~~   57 (353)
T 2x2e_A           32 PQIAVVGGQSAGKSSVLENFVGRDFL   57 (353)
T ss_dssp             CEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCcC
Confidence            68999999999999999999988874

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=94.08  E-value=0.19  Score=48.94  Aligned_cols=84  Identities=19%  Similarity=0.077  Sum_probs=49.1

Q ss_pred             EEEEEEeCCCcccccc-cch---h--hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhc
Q psy18160         90 IRFEIWDTAGQERYHT-LAP---M--YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRM  163 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~-l~~---~--~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      +.+.|+||+|...... +..   .  .+..+|.+++|.|.+....   .......+.                       
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~-----------------------  234 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK-----------------------  234 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH-----------------------
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh-----------------------
Confidence            4578999999653211 111   1  1236899999999865432   111122221                       


Q ss_pred             CCCCC-e-EEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEc
Q psy18160        164 APPNI-V-IALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETS  206 (373)
Q Consensus       164 ~~~~~-p-iilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evS  206 (373)
                        ... | ..+|.||.|....     ...+..+....+.++..++
T Consensus       235 --~~~~~i~gvVlnK~D~~~~-----~g~~l~~~~~~~~pi~~ig  272 (432)
T 2v3c_C          235 --EAVGEIGSIIVTKLDGSAK-----GGGALSAVAETKAPIKFIG  272 (432)
T ss_dssp             --TTSCSCEEEEEECSSSCST-----THHHHHHHHHSSCCEEEEC
T ss_pred             --hcccCCeEEEEeCCCCccc-----hHHHHHHHHHHCCCEEEee
Confidence              123 4 8899999997432     2234456677788876665

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=93.99  E-value=0.018  Score=55.64  Aligned_cols=43  Identities=16%  Similarity=0.186  Sum_probs=32.0

Q ss_pred             ccceEEEEEccCccccceeeEEee---eCcccccccC--Ccccccccc
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFV---RGQFHEYQES--TIGGECQSS  337 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~---~~~f~~~~~~--Tig~~~~~~  337 (373)
                      ...++++++|..++|||||+++++   .+.+..++.+  |+...|...
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~   55 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADA   55 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeee
Confidence            346899999999999999999998   3456666666  888555533

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=93.97  E-value=0.01  Score=57.18  Aligned_cols=62  Identities=13%  Similarity=0.067  Sum_probs=40.5

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcc-cccccCCccccccccceeeeecceeeeCCe---------------EEEEEehh
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQF-HEYQESTIGGECQSSHSISFSMPTKNRLNN---------------NVPITFVW  360 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f-~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~---------------~~~l~iw~  360 (373)
                      ..++.++|.+|+|||||++.+++..+ .....|+..        ++.....+.+.|.               ...+.+||
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tT--------i~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD   91 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYAT--------IDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFD   91 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCC--------CCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEEC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCcee--------ecceeeeeeeCCcchhhhhhhcccccccCcceEEEe
Confidence            36889999999999999999998655 333333322        2333334445542               13689999


Q ss_pred             hHHHHh
Q psy18160        361 VIMMIF  366 (373)
Q Consensus       361 ~~~~~~  366 (373)
                      ++-+.-
T Consensus        92 ~pGl~~   97 (392)
T 1ni3_A           92 IAGLTK   97 (392)
T ss_dssp             TGGGCC
T ss_pred             cccccc
Confidence            986543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=93.66  E-value=0.017  Score=57.25  Aligned_cols=54  Identities=24%  Similarity=0.201  Sum_probs=33.0

Q ss_pred             cceEEEEEccCccccceeeEEeeeCc-------cccccc--CCccccccccceeeeecceeeeCCeEEEEEehhh
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQ-------FHEYQE--STIGGECQSSHSISFSMPTKNRLNNNVPITFVWV  361 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~-------f~~~~~--~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~  361 (373)
                      ..++++++|..++|||||+++++...       +..++.  .|+.          .....+..++  ..+.|||.
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~----------~~~~~~~~~~--~~i~iiDt   80 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITID----------IGFSAFKLEN--YRITLVDA   80 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC------------------------------CCCEEEETT--EEEEECCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEe----------cceEEEEECC--EEEEEEEC
Confidence            45899999999999999999998665       333333  3444          2222333454  67899996

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=93.44  E-value=0.021  Score=53.98  Aligned_cols=57  Identities=16%  Similarity=0.064  Sum_probs=37.6

Q ss_pred             EEEEEccCccccceeeEEeeeCccc-ccc-cCCccccccccceeeeecceeeeCCeEEEEEehhhHHHHh
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFH-EYQ-ESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMMIF  366 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~-~~~-~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~~~~  366 (373)
                      +++++|.+++|||||+++++...+. ..| .+|+.        ..+  ..+.+++ ...+.|||+.-.+.
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~--------p~~--g~v~~~~-~~~~~l~DtPG~i~  218 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLV--------PNL--GMVETDD-GRSFVMADLPGLIE  218 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCC--------CCE--EEEECSS-SCEEEEEEHHHHHH
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccC--------ceE--EEEEeCC-CceEEEecCCCCcc
Confidence            5789999999999999999876532 233 24443        111  2234444 24789999987654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=92.77  E-value=0.02  Score=52.94  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=23.2

Q ss_pred             eEEEEEccCccccceeeEEeeeCccc
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFH  323 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~  323 (373)
                      .++.++|.+|+|||||++++++..+.
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~~~~   34 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQKIS   34 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCcc
Confidence            57899999999999999999987663

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=92.52  E-value=0.01  Score=57.30  Aligned_cols=24  Identities=17%  Similarity=0.234  Sum_probs=22.0

Q ss_pred             cceEEEEEccCccccceeeEEeee
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVR  319 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~  319 (373)
                      ..++++++|..++|||||+++++.
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~   33 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTY   33 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHh
Confidence            458999999999999999999986

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=92.52  E-value=0.087  Score=53.34  Aligned_cols=55  Identities=7%  Similarity=-0.172  Sum_probs=33.4

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCc--Cc------ceeeeEEEEEEEE-CCEEEEEEEEeCCCccc
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFY--PY------LFSAAFITQTVCL-DDVTIRFEIWDTAGQER  102 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~--~~------Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~  102 (373)
                      ..+.++++|.   |||||+|++++....  ..      |.|....  ...+ ......+.++||+|...
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~--~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMW--CVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEE--EEECSSSTTCEEEEEEECCBCC
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEe--ecccccCCCceEEEecCCCcCc
Confidence            4567788886   999999999988632  11      3332211  1111 11223578999999753

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=92.22  E-value=0.015  Score=59.32  Aligned_cols=25  Identities=32%  Similarity=0.490  Sum_probs=22.5

Q ss_pred             cceEEEEEccCccccceeeEEeeeC
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRG  320 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~  320 (373)
                      ..+|++++|.+++|||||+++++..
T Consensus       166 ~~lkV~ivG~~n~GKSTLin~Ll~~  190 (611)
T 3izq_1          166 PHLSFVVLGHVDAGKSTLMGRLLYD  190 (611)
T ss_dssp             CCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHh
Confidence            4689999999999999999999854

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=92.21  E-value=0.018  Score=57.72  Aligned_cols=59  Identities=10%  Similarity=0.150  Sum_probs=35.8

Q ss_pred             cceEEEEEccCccccceeeEEeeeC--ccc----------------c--cccCCccccccccceeeeecceeeeCCeEEE
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRG--QFH----------------E--YQESTIGGECQSSHSISFSMPTKNRLNNNVP  355 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~--~f~----------------~--~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~  355 (373)
                      ...+++++|.+++|||||+++++..  .+.                .  ....+.|        +.+....+.++.....
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rG--------iTi~~~~~~~~~~~~~   83 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRG--------ISITTSVMQFPYHDCL   83 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC---------------------------------------CCTTEEEEEETTEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCC--------cceeeeEEEEEECCeE
Confidence            3579999999999999999998852  220                0  1223445        3444444555556688


Q ss_pred             EEehhhH
Q psy18160        356 ITFVWVI  362 (373)
Q Consensus       356 l~iw~~~  362 (373)
                      +.|||++
T Consensus        84 i~liDTP   90 (529)
T 2h5e_A           84 VNLLDTP   90 (529)
T ss_dssp             EEEECCC
T ss_pred             EEEEECC
Confidence            9999974

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=92.11  E-value=0.02  Score=59.14  Aligned_cols=66  Identities=12%  Similarity=0.135  Sum_probs=38.8

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCc--cc---cccc---cceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI--GG---ECQS---SHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Ti--g~---~~~~---~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+++++|..++|||||+.+++...+......+|  |.   ++..   ...+.+..+...+....+.++|||.+
T Consensus         9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTp   82 (665)
T 2dy1_A            9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAP   82 (665)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECC
T ss_pred             CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCC
Confidence            4688999999999999999998544332222222  00   0000   00023333444455567899999964

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=92.00  E-value=0.022  Score=57.95  Aligned_cols=24  Identities=29%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             ccceEEEEEccCccccceeeEEee
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFV  318 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~  318 (373)
                      ...++++++|..++|||||+++++
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll  198 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIM  198 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHH
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHH
Confidence            346899999999999999999985

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=91.83  E-value=0.038  Score=56.18  Aligned_cols=58  Identities=16%  Similarity=0.173  Sum_probs=29.9

Q ss_pred             ceEEEEEccCccccceeeEEeeeC--ccc-----cc------ccCCccccccccceeeeecceeee-----CCeEEEEEe
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRG--QFH-----EY------QESTIGGECQSSHSISFSMPTKNR-----LNNNVPITF  358 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~--~f~-----~~------~~~Tig~~~~~~~~~~~~~~~~~v-----~~~~~~l~i  358 (373)
                      ..+++++|..++|||||+.+++..  .+.     ..      ...+.|        +.+..+.+.+     +|..+.++|
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerG--------iTi~~~~~~~~~~~~~g~~~~l~l   75 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERG--------ITIKAQSVTLDYKASDGETYQLNF   75 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC----------------------------------CEEEEEEECTTSCEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhccc--------ceeeeeEEEEEEecCCCCeEEEEE
Confidence            468999999999999999998752  221     11      122345        2332233333     678899999


Q ss_pred             hhhH
Q psy18160        359 VWVI  362 (373)
Q Consensus       359 w~~~  362 (373)
                      ||+.
T Consensus        76 iDTP   79 (599)
T 3cb4_D           76 IDTP   79 (599)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9964

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=91.59  E-value=0.013  Score=58.22  Aligned_cols=56  Identities=18%  Similarity=0.122  Sum_probs=37.9

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+++++|..++|||||++++....+...+.+++.        .+.....+..++.  .+.|||+.
T Consensus         4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT--------~~i~~~~v~~~~~--~i~~iDTP   59 (501)
T 1zo1_I            4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGIT--------QHIGAYHVETENG--MITFLDTP   59 (501)
T ss_dssp             CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCC--------CCSSCCCCCTTSS--CCCEECCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCee--------EeEEEEEEEECCE--EEEEEECC
Confidence            35789999999999999999988777665554444        2222222333443  57889864

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=91.49  E-value=0.2  Score=50.91  Aligned_cols=22  Identities=14%  Similarity=0.084  Sum_probs=17.4

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCc
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFY   70 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~   70 (373)
                      .++++|+   |||||++.+++-...
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCC
Confidence            4888887   999999999987433

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=91.47  E-value=0.038  Score=58.52  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=21.9

Q ss_pred             cceEEEEEccCccccceeeEEeeeC
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRG  320 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~  320 (373)
                      ...|++++|..++|||||+++++..
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~   42 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQR   42 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999998753

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=91.45  E-value=0.025  Score=54.59  Aligned_cols=25  Identities=20%  Similarity=0.250  Sum_probs=22.5

Q ss_pred             cceEEEEEccCccccceeeEEeeeC
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRG  320 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~  320 (373)
                      ..++++++|..++|||||+++++..
T Consensus         7 ~~~~I~vvG~~~~GKSTLi~~L~~~   31 (403)
T 3sjy_A            7 PEVNIGVVGHVDHGKTTLVQAITGI   31 (403)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCc
Confidence            4689999999999999999999864

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=91.29  E-value=0.012  Score=58.96  Aligned_cols=23  Identities=13%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             cceEEEEEccCccccceeeEEee
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFV  318 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~  318 (373)
                      ...+++++|.+++|||||+++++
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll   34 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLL   34 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHH
Confidence            34689999999999999999996

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=91.05  E-value=0.22  Score=48.69  Aligned_cols=57  Identities=11%  Similarity=0.070  Sum_probs=35.4

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhC------------------cCcCc------ceeeeEEEEEEEE---CCEEEEEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINV------------------VFYPY------LFSAAFITQTVCL---DDVTIRFEI   94 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~------------------~~~~~------Tig~~~~~~~i~~---~~~~v~l~i   94 (373)
                      ..+..+.|+|.   |||+|+|++++.                  .|...      |.|+-.....+..   ++..+.+.+
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl  144 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence            34566777776   999999999863                  33322      4443222111111   445678999


Q ss_pred             EeCCCcc
Q psy18160         95 WDTAGQE  101 (373)
Q Consensus        95 ~Dt~G~e  101 (373)
                      .||+|..
T Consensus       145 lDTeG~~  151 (447)
T 3q5d_A          145 MDTQGTF  151 (447)
T ss_dssp             EEEECCC
T ss_pred             EcCCccc
Confidence            9999964

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=91.03  E-value=0.035  Score=54.60  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=22.3

Q ss_pred             cceEEEEEccCccccceeeEEeeeC
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRG  320 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~  320 (373)
                      ..++++++|..++|||||+++++..
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~   30 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYK   30 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3589999999999999999999853

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=90.96  E-value=0.036  Score=54.05  Aligned_cols=26  Identities=23%  Similarity=0.368  Sum_probs=22.6

Q ss_pred             cceEEEEEccCccccceeeEEeeeCc
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQ  321 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~  321 (373)
                      ..++++++|..++|||||+++++.+.
T Consensus        23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~   48 (434)
T 1zun_B           23 EMLRFLTCGNVDDGKSTLIGRLLHDS   48 (434)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceEEEEEECCCCCHHHHHHHHHhhc
Confidence            35899999999999999999998543

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=90.84  E-value=0.033  Score=60.42  Aligned_cols=60  Identities=13%  Similarity=0.049  Sum_probs=36.2

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCc-------ccc-------cccCCccccccccceeeeecceeeeCCeEEEEEehh
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQ-------FHE-------YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVW  360 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~-------f~~-------~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~  360 (373)
                      ...++++++|..++|||||+++++...       |..       ..+.+.|        +.+....+.+++....+.|||
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerG--------ITIdva~v~f~~~~~kI~IID  365 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARG--------ITINTSHVEYDTPTRHYAHVD  365 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC-----------------------------CCSCEEEECSSCEEEEEE
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCc--------eeEEEEEEEEcCCCEEEEEEE
Confidence            346899999999999999999988631       111       2234666        333334445566678899999


Q ss_pred             hH
Q psy18160        361 VI  362 (373)
Q Consensus       361 ~~  362 (373)
                      ++
T Consensus       366 TP  367 (1289)
T 3avx_A          366 CP  367 (1289)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=90.66  E-value=0.04  Score=57.03  Aligned_cols=25  Identities=12%  Similarity=0.102  Sum_probs=22.0

Q ss_pred             ccceEEEEEccCccccceeeEEeee
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVR  319 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~  319 (373)
                      ....+++++|..++|||||+++++.
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~   34 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILY   34 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHH
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHH
Confidence            3457999999999999999999983

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=90.37  E-value=0.025  Score=55.18  Aligned_cols=25  Identities=32%  Similarity=0.503  Sum_probs=22.3

Q ss_pred             cceEEEEEccCccccceeeEEeeeC
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRG  320 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~  320 (373)
                      ..++++++|..++|||||+++++.+
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~   29 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMD   29 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHH
Confidence            3589999999999999999999864

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=90.31  E-value=0.038  Score=53.22  Aligned_cols=24  Identities=17%  Similarity=0.263  Sum_probs=21.7

Q ss_pred             ceEEEEEccCccccceeeEEeeeC
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRG  320 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~  320 (373)
                      .+|++++|..++|||||+++++..
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~   26 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKI   26 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhCh
Confidence            489999999999999999999863

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=89.88  E-value=0.14  Score=47.11  Aligned_cols=38  Identities=18%  Similarity=0.171  Sum_probs=29.5

Q ss_pred             eeeEEeeeCccc-ccccCCccccccccceeeeecceeeeCCeEEEEEehhh
Q psy18160        312 SLVLRFVRGQFH-EYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWV  361 (373)
Q Consensus       312 ~l~~~~~~~~f~-~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~  361 (373)
                      +++.||+.+.|. ..|.||||        ..|. ..+..++   +++|||+
T Consensus        32 sl~~~~~~~~f~~~~~~pTiG--------d~~~-~~~~~~~---~~~iwD~   70 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVG--------DRVE-YTPDETG---SGVIENV   70 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTT--------CEEE-EECCCSS---SEEEEEE
T ss_pred             cEEEEEEcccccccCCCCCCc--------cEEE-EEEcCCC---eEEEEEE
Confidence            799999999999 89999999        4443 3333333   7899997

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=89.70  E-value=0.043  Score=52.37  Aligned_cols=46  Identities=13%  Similarity=0.199  Sum_probs=33.1

Q ss_pred             EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +++++|..++|||||+++++      .+..|+..        .+.  .+  +....++.|||.+
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~--------~~~--~~--~~~~~~i~iiDtP   68 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------KKGTSSDI--------TMY--NN--DKEGRNMVFVDAH   68 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------EEEEESSS--------EEE--EE--CSSSSEEEEEECT
T ss_pred             EEEEECCCCCCHHHHHHHHH------hCCEEEEe--------eEE--EE--ecCCeEEEEEECC
Confidence            88999999999999999998      45567762        221  12  2233458999975

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=89.03  E-value=0.077  Score=53.88  Aligned_cols=23  Identities=22%  Similarity=0.366  Sum_probs=18.8

Q ss_pred             ceEEEEEccCccccceeeEEeee
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVR  319 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~  319 (373)
                      ..+++++|..++|||||+.+++.
T Consensus         6 irnI~IiGh~d~GKTTLi~rLl~   28 (600)
T 2ywe_A            6 VRNFCIIAHVDHGKSTLADRLLE   28 (600)
T ss_dssp             EEEEEEECC--CCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999875

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=88.98  E-value=0.046  Score=55.55  Aligned_cols=36  Identities=19%  Similarity=0.237  Sum_probs=28.0

Q ss_pred             ceEEEEEccCccccceeeEEeeeCccccc----ccCCccc
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEY----QESTIGG  332 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~----~~~Tig~  332 (373)
                      ..+++++|..++|||||+++++...+...    ..+++|.
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~   44 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGA   44 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTE
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCe
Confidence            36899999999999999999987666442    3357773

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=88.88  E-value=0.69  Score=39.15  Aligned_cols=87  Identities=11%  Similarity=0.001  Sum_probs=56.6

Q ss_pred             EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160         90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV  169 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (373)
                      +.+.|+|+++..  .......+..+|.++++...+.. + ..+.++++.+....                   ...++.+
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~-------------------~~~~~~~  132 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQ-------------------AYSRKVE  132 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTS-------------------CGGGCCE
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHH-------------------HhCCCCc
Confidence            557899998764  33445567789999999987644 4 66666666665511                   0124667


Q ss_pred             EEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEE
Q psy18160        170 IALAGNKADLPTSRRCVEYSEGEAYAEENGLLFM  203 (373)
Q Consensus       170 iilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~  203 (373)
                      +.+|.|+.|-..    ....+..++.+.++.+++
T Consensus       133 ~~vv~N~~~~~~----~~~~~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          133 ARFLITRKIEMA----TMLNVLKESIKDTGVKAF  162 (206)
T ss_dssp             EEEEECSBCTTE----EEEHHHHHHHHHHTCCBC
T ss_pred             EEEEEeccCCCc----hHHHHHHHHHHHcCCcee
Confidence            899999999532    223455666666676554

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=88.78  E-value=0.083  Score=51.98  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=21.5

Q ss_pred             cceEEEEEccCccccceeeEEeee
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVR  319 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~  319 (373)
                      ..++++++|..++|||||+++++.
T Consensus        42 ~~~~i~iiG~vd~GKSTLi~~Ll~   65 (467)
T 1r5b_A           42 EHVNIVFIGHVDAGKSTLGGNILF   65 (467)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHH
T ss_pred             CeeEEEEEECCCCCHHHHHHHHHH
Confidence            458999999999999999999864

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=88.26  E-value=0.19  Score=46.70  Aligned_cols=54  Identities=13%  Similarity=0.073  Sum_probs=41.6

Q ss_pred             CCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        164 APPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       164 ~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ...++|+| |.+|.|..       .++..+.|++.+++++.++..+...+..+..+|...+.
T Consensus        77 l~~~~P~I-Iltrg~~~-------peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~  130 (314)
T 1ko7_A           77 CRPETPAI-IVTRDLEP-------PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELA  130 (314)
T ss_dssp             CCTTCCCE-EECTTCCC-------CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred             hcCCCCEE-EEeCCCCC-------CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhc
Confidence            33455654 66777754       35678889999999999999999999998888877665

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=88.20  E-value=0.22  Score=46.64  Aligned_cols=90  Identities=10%  Similarity=0.030  Sum_probs=51.7

Q ss_pred             EEEEeCCCccccccc-chh---h--ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCC
Q psy18160         92 FEIWDTAGQERYHTL-APM---Y--YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP  165 (373)
Q Consensus        92 l~i~Dt~G~e~~~~l-~~~---~--~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (373)
                      +.+.||+|....... ...   .  .-..|-.+++.|.....   ++.+.+..+.+                        
T Consensus       214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~------------------------  266 (328)
T 3e70_C          214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNE------------------------  266 (328)
T ss_dssp             EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHH------------------------
T ss_pred             hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHH------------------------
Confidence            457899987433221 111   0  11478889999976543   33333333332                        


Q ss_pred             CCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q psy18160        166 PNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNE  215 (373)
Q Consensus       166 ~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~  215 (373)
                      .--.-+|+.||.|-..     ..-.+...+...+.|+..++  +|+++++
T Consensus       267 ~~~it~iilTKlD~~a-----~~G~~l~~~~~~~~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          267 AVKIDGIILTKLDADA-----RGGAALSISYVIDAPILFVG--VGQGYDD  309 (328)
T ss_dssp             HSCCCEEEEECGGGCS-----CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred             hcCCCEEEEeCcCCcc-----chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            0113478889999532     23445667778899988777  6666654

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=87.87  E-value=0.31  Score=43.06  Aligned_cols=26  Identities=4%  Similarity=-0.155  Sum_probs=17.8

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcC
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVF   69 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~   69 (373)
                      +.+.+.+++-|+   |||.|++++++..-
T Consensus        26 P~nkilvl~~~~~~~~~~~~~~~lf~~~~   54 (233)
T 3uc9_A           26 PQNKILVLSDHPHNFLKTQFLQDLFHCSS   54 (233)
T ss_dssp             CCCEEEEEEEGGGHHHHHHHHHHHHCCCC
T ss_pred             CCCceEEEecCcccccHHHHHHHHhcccc
Confidence            344444444455   89999999998853

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=87.83  E-value=0.071  Score=55.23  Aligned_cols=34  Identities=18%  Similarity=0.375  Sum_probs=26.9

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcc-cccccCCc
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQF-HEYQESTI  330 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f-~~~~~~Ti  330 (373)
                      .++++++|.+++|||||++++++..+ .....|+.
T Consensus        69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T  103 (695)
T 2j69_A           69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT  103 (695)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence            58999999999999999999997764 33344444

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=86.71  E-value=0.16  Score=48.52  Aligned_cols=58  Identities=17%  Similarity=0.076  Sum_probs=38.2

Q ss_pred             eEEEEEccCccccceeeEEeeeCc-ccccc-cCCccccccccceeeeecceeeeCCeEEEEEehhhHHHHhc
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQ-FHEYQ-ESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMMIFG  367 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~-f~~~~-~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~~~~~  367 (373)
                      ..+.++|.++||||||++++.... -...| ..|+.          -....+.++|.  +++|.|++-.+-|
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~----------~~~g~~~~~~~--~i~l~D~pGl~~~  132 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLV----------TVPGVIRYKGA--KIQMLDLPGIIDG  132 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCC----------EEEEEEEETTE--EEEEEECGGGCCC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceee----------eeeEEEEeCCc--EEEEEeCCCccCC
Confidence            578999999999999999988643 22333 33332          12244556665  4678898866543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=86.64  E-value=0.062  Score=46.55  Aligned_cols=35  Identities=17%  Similarity=0.202  Sum_probs=25.5

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCcc
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG  331 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig  331 (373)
                      ..+++++|.+|+|||||+++++...+......++.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~   64 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAML   64 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEe
Confidence            36889999999999999999986543332233444

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=86.55  E-value=0.13  Score=48.70  Aligned_cols=26  Identities=27%  Similarity=0.447  Sum_probs=23.4

Q ss_pred             EEEEEccCccccceeeEEeeeCcccc
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHE  324 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~  324 (373)
                      +++++|++|+|||||++++++..|..
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g~~~lp   61 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVGKDFLP   61 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHTSCCSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCcCC
Confidence            78999999999999999999887733

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=86.38  E-value=1  Score=41.25  Aligned_cols=92  Identities=15%  Similarity=0.117  Sum_probs=55.7

Q ss_pred             EEEEEEeCCCccc--cc-ccch-----hhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhh
Q psy18160         90 IRFEIWDTAGQER--YH-TLAP-----MYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQ  161 (373)
Q Consensus        90 v~l~i~Dt~G~e~--~~-~l~~-----~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                      +.+.|+||+|...  .. .+..     .....+|.+++|.|.....   +..+....+..                    
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~--------------------  237 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ--------------------  237 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH--------------------
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh--------------------
Confidence            4578999999765  21 1111     1234789999999986432   22222222221                    


Q ss_pred             hcCCCCCe-EEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q psy18160        162 RMAPPNIV-IALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEI  216 (373)
Q Consensus       162 ~~~~~~~p-iilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~l  216 (373)
                           ..| ..+|.||.|...     ....+..++...+.|+..++  .|++++++
T Consensus       238 -----~~~i~gvVlnk~D~~~-----~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          238 -----ASKIGTIIITKMDGTA-----KGGGALSAVAATGATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             -----TCTTEEEEEECGGGCT-----THHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             -----hCCCCEEEEeCCCCCc-----chHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence                 234 678999999643     23445667777888887776  56666543

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=85.26  E-value=0.22  Score=51.53  Aligned_cols=24  Identities=13%  Similarity=0.102  Sum_probs=21.1

Q ss_pred             cceEEEEEccCccccceeeEEeee
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVR  319 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~  319 (373)
                      ...+++++|..++|||||+.+++.
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~~Ll~   32 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTERILF   32 (704)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999864

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=84.53  E-value=0.18  Score=52.09  Aligned_cols=24  Identities=13%  Similarity=0.205  Sum_probs=21.5

Q ss_pred             cceEEEEEccCccccceeeEEeee
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVR  319 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~  319 (373)
                      ...+++++|.+++|||||+++++.
T Consensus         9 ~~~~I~IvG~~~aGKSTL~~~Ll~   32 (693)
T 2xex_A            9 KTRNIGIMAHIDAGKTTTTERILY   32 (693)
T ss_dssp             TEEEEEEECCGGGTHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999984

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=84.20  E-value=0.13  Score=47.23  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=23.0

Q ss_pred             eEEEEEccCccccceeeEEeeeCcc
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQF  322 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f  322 (373)
                      .+++++|.+++|||||++++++..+
T Consensus        25 ~~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           25 PQIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CeEEEEcCCCCCHHHHHHHHHCCCc
Confidence            5799999999999999999998776

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=83.08  E-value=4.7  Score=34.45  Aligned_cols=85  Identities=13%  Similarity=0.037  Sum_probs=55.3

Q ss_pred             EEEEEEeCCCc-ccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160         90 IRFEIWDTAGQ-ERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI  168 (373)
Q Consensus        90 v~l~i~Dt~G~-e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (373)
                      +.+.|+|+++. ..  ......+..+|.+|++...+ ..+...+.+.++.+..                     ..  +.
T Consensus        68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~---------------------~~--~~  121 (209)
T 3cwq_A           68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQK---------------------LG--NN  121 (209)
T ss_dssp             CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHH---------------------TC--SS
T ss_pred             CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHh---------------------cc--CC
Confidence            45778999875 32  23455677899999999874 5667777777666655                     11  45


Q ss_pred             eEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEE
Q psy18160        169 VIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFM  203 (373)
Q Consensus       169 piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~  203 (373)
                      ++.+|.|+.|-...   ....+..+..++++.+++
T Consensus       122 ~~~vv~N~~~~~~~---~~~~~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          122 RFRILLTIIPPYPS---KDGDEARQLLTTAGLPLF  153 (209)
T ss_dssp             SEEEEECSBCCTTS---CHHHHHHHHHHHTTCCBC
T ss_pred             CEEEEEEecCCccc---hHHHHHHHHHHHcCCchh
Confidence            68899999986430   113455555555666554

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=83.03  E-value=0.2  Score=48.47  Aligned_cols=23  Identities=35%  Similarity=0.510  Sum_probs=19.9

Q ss_pred             EEEEEccCccccceeeEEeeeCc
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQ  321 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~  321 (373)
                      .+.++|.+|+|||||++.+....
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCC
Confidence            46899999999999999888653

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=81.72  E-value=11  Score=32.35  Aligned_cols=86  Identities=15%  Similarity=0.126  Sum_probs=57.3

Q ss_pred             EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160         90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV  169 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (373)
                      +.+.|+|+++.-  .......+..+|.++++...+ ..+...+.++++.+..                     ...+..+
T Consensus       119 yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~---------------------~~~~~~~  174 (245)
T 3ea0_A          119 YDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKE---------------------FEKPISR  174 (245)
T ss_dssp             CSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHT---------------------CSSCCSC
T ss_pred             CCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHH---------------------hCCCccc
Confidence            457789997743  234455677899999999874 6777777777777765                     2233456


Q ss_pred             EEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEE
Q psy18160        170 IALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMET  205 (373)
Q Consensus       170 iilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~ev  205 (373)
                      +.+|.|+.|-...   ...+   .+.+.++.+++.+
T Consensus       175 ~~~v~N~~~~~~~---~~~~---~~~~~~~~~v~~~  204 (245)
T 3ea0_A          175 IEIILNRADTNSR---ITSD---EIEKVIGRPISKR  204 (245)
T ss_dssp             EEEEEESTTSCTT---SCHH---HHHHHHTSCEEEE
T ss_pred             eEEEEecCCCCCC---CCHH---HHHHHhCCCeEEE
Confidence            8899999985432   3333   3445567776654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=80.52  E-value=0.21  Score=45.33  Aligned_cols=23  Identities=30%  Similarity=0.726  Sum_probs=20.2

Q ss_pred             ceEEEEEccCccccceeeEEeee
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVR  319 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~  319 (373)
                      .|++.++|++|+|||||++.+++
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g   24 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFK   24 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            47899999999999999987665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	373
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-27
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-08
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-26
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-07
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-25
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-07
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-23
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-07
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	4e-23
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-07
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-22
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	8e-07
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	5e-22
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	9e-07
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	9e-22
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	3e-08
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	5e-21
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	6e-08
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	8e-21
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-07
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	2e-20
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	2e-06
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-19
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-08
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	6e-19
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	9e-08
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	6e-19
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	8e-09
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	4e-18
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	6e-11
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	5e-17
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	4e-08
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-16
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	5e-07
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	4e-16
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	5e-07
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-16
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	9e-08
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	8e-15
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	4e-07
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-14
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-05
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	7e-14
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	6e-09
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-13
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-04
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-13
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	1e-08
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	4e-13
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	7e-08
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	5e-13
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-08
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	6e-13
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-08
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	6e-13
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	7e-07
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	7e-13
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-07
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-12
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-05
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-12
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-06
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	4e-12
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	3e-07
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	4e-11
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	7e-05
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	5e-11
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-07
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	5e-11
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	7e-06
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	6e-11
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-07
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-10
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	4e-09
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-10
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	1e-08
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-10
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-04
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	4e-10
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	5e-09
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-09
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	8e-08
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	4e-09
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-08
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	6e-09
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-06
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-08
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-06
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-08
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	3e-08
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	3e-08
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-07
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	5e-08
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-05
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	3e-07
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	6e-05
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-07
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-05
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	7e-07
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	4e-06
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-06
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-05
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	1e-05
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-05
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	8e-05
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	4e-05
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	6e-05
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	7e-05
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	9e-05
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-04

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (260), Expect = 2e-27
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 22/159 (13%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           +       F  +T+ LD   I+ +IWDTAGQER+ T+   YYR A   ++VYDITN+ +F
Sbjct: 35  FISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF 94

Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
              ++W++ ++  A  +++                       + GNK      +R V   
Sbjct: 95  DNIRNWIRNIEEHASADVE---------------------KMILGNK-CDVNDKRQVSKE 132

Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
            GE  A + G+ FMETSAK  +NV   F  +A+ +  K 
Sbjct: 133 RGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (119), Expect = 4e-08
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQS 336
           +KL+L+G+S VGK+ ++ RF    F+    STIG + + 
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKI 45

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 1e-26
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 22/157 (14%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           +       F  + + +D V ++ ++WDTAGQER+ ++   YYR+A A +++YD+TN+ +F
Sbjct: 36  FISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASF 95

Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
              ++W+ E+   A  ++                                    R V+  
Sbjct: 96  DNIQAWLTEIHEYAQHDVALMLLGNKVDSA----------------------HERVVKRE 133

Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
           +GE  A+E GL FMETSAKT +NV+  F  IAK+L +
Sbjct: 134 DGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 1e-07
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSI 340
            +K++L+G+S VGK+ L++RF  G F      +  G    +  +
Sbjct: 6   AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVL 49

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.5 bits (247), Expect = 1e-25
 Identities = 56/150 (37%), Positives = 79/150 (52%), Gaps = 23/150 (15%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +TV ++   ++ +IWDTAGQER+ T+   YYR A   I+VYDIT++           
Sbjct: 39  FKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDE----------- 87

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                      TF   K W K +   A     + L GNK+D+    R V   +GEA A+E
Sbjct: 88  ----------RTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKE 135

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
            G+ F+E+SAK   NVNEIF  +AK + +K
Sbjct: 136 LGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSH 338
            K++L+G+S VGKS L++RFV  +F+    +TIG + +   
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKT 43

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.7 bits (232), Expect = 2e-23
 Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 22/155 (14%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
                   F+ +TV ++   ++ +IWDTAGQER+ ++   YYR+A A I+ YDIT +   
Sbjct: 34  QGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCE--- 90

Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
                             ++F     W++E+++ A   ++  L GNK DL   R   +  
Sbjct: 91  ------------------ESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQ- 131

Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
             E ++E   + ++ETSAK + NV ++F+++A +L
Sbjct: 132 RAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQS 336
           +K+VL+G + VGK+ LV RF +G F   Q +TIG +   
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMI 44

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.6 bits (229), Expect = 4e-23
 Identities = 60/155 (38%), Positives = 84/155 (54%), Gaps = 22/155 (14%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
            P+     F T+ + +    I+ +IWDTAGQER+  +   YYR A  A++VYDIT +   
Sbjct: 33  CPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR--- 89

Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
                              T+    SW+ + + +  PN VI L GNKAD   ++R V Y 
Sbjct: 90  ------------------STYNHLSSWLTDARNLTNPNTVIILIGNKAD-LEAQRDVTYE 130

Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
           E + +AEENGLLF+E SAKT  NV + F+E AKK+
Sbjct: 131 EAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 2e-07
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSH 338
           +K +++G+  VGKS L+ +F   +F      TIG E  +  
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI 45

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 91.1 bits (225), Expect = 2e-22
 Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 22/158 (13%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           +       F  +T+  +D  I+ +IWDTAGQERY T+   YYR A   I++YDITN+++F
Sbjct: 34  FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF 93

Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
              + W  +++  +  N                       + L GNK D+   R      
Sbjct: 94  NAVQDWSTQIKTYSWDNAQ---------------------VLLVGNKCDMEDERVVSSER 132

Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
             +  A+  G  F E SAK  +NV + F  +   + +K
Sbjct: 133 GRQ-LADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.4 bits (109), Expect = 8e-07
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSH 338
            +K++++G S+VGK+S + R+    F     ST+G + +   
Sbjct: 5   MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKT 46

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.9 bits (222), Expect = 5e-22
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 22/157 (14%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
                   F  +T+ +D    +  IWDTAGQER+ TL P YYR AQ  I+VYD+T +DTF
Sbjct: 36  LAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTF 95

Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
            +  +W+ EL+     N                                +    R V+ +
Sbjct: 96  VKLDNWLNELETYCTRNDIVN----------------------MLVGNKIDKENREVDRN 133

Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
           EG  +A ++ +LF+E SAKT   V   F E+ +K+ +
Sbjct: 134 EGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 170

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 9e-07
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQ 335
            K++++GES VGKSSL+LRF    F     +TIG + +
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFK 45

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.5 bits (221), Expect = 9e-22
 Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 27/177 (15%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
           F  +TV LD  T++ +IWDTAGQER+ T+   YYR +   IIVYD+T+Q           
Sbjct: 43  FKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQ----------- 91

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
                     ++F   K W++E+ R A   ++  L GNK      +R VEY   + +A+ 
Sbjct: 92  ----------ESFNGVKMWLQEIDRYATSTVLKLLVGNK-CDLKDKRVVEYDVAKEFADA 140

Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQ 254
           N + F+ETSA  + NV + F+ +A+++ +         + L ET +  +     N +
Sbjct: 141 NKMPFLETSALDSTNVEDAFLTMARQIKESMSQ-----QNLNETTQKKEDKGNVNLK 192

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (121), Expect = 3e-08
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQS 336
           +KL+L+G S VGKS L+LRF    +     STIG + + 
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKI 45

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.2 bits (215), Expect = 5e-21
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 21/148 (14%)

Query: 80  TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
                     +  ++WDTAGQER+ +L   ++R+A   ++++D+T+Q +F   ++W    
Sbjct: 54  PNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNW---- 109

Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
                             +        N  I L GNKADLP  R   E  +    A++ G
Sbjct: 110 ----------------MSQLQANAYCENPDIVLIGNKADLPDQREVNER-QARELADKYG 152

Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           + + ETSA T  NV +    +   + K+
Sbjct: 153 IPYFETSAATGQNVEKAVETLLDLIMKR 180

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 6e-08
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPIT 357
            KL+ LG+S VGK++ + R+   +F+    +T+G + +    +  +            + 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 358 F 358
            
Sbjct: 66  L 66

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.5 bits (213), Expect = 8e-21
 Identities = 57/158 (36%), Positives = 78/158 (49%), Gaps = 22/158 (13%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
                   F T+++ +D  TI+ +IWDTAGQERY  +   YYR A  A++VYDI      
Sbjct: 33  SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKH--- 89

Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
                              T+   + W+KEL+  A  NIVI L GNK+D     R V   
Sbjct: 90  ------------------LTYENVERWLKELRDHADSNIVIMLVGNKSD-LRHLRAVPTD 130

Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           E  A+AE+N L F+ETSA  + NV E F  I  ++ + 
Sbjct: 131 EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 168

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 3e-07
 Identities = 19/38 (50%), Positives = 28/38 (73%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQ 335
           +K+VL+G+S VGKS+L+ RF R +F+   +STIG E  
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFA 42

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.7 bits (211), Expect = 2e-20
 Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 23/164 (14%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
             +     F ++ + +    ++ +IWDTAGQER+ ++   YYR A  A++VYDIT+++T+
Sbjct: 34  SNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY 93

Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
               +W+ + + +A  NI                      I L GNK     + R V + 
Sbjct: 94  NALTNWLTDARMLASQNIV---------------------IILCGNK-KDLDADREVTFL 131

Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQ 233
           E   +A+EN L+F+ETSA T  NV E FV+ A+K+  K + +G+
Sbjct: 132 EASRFAQENELMFLETSALTGENVEEAFVQCARKILNK-IESGE 174

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSH 338
           +K +++G +  GKS L+ +F+  +F +    TIG E  S  
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKI 46

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (204), Expect = 1e-19
 Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 22/156 (14%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           Y       F+++T+ L+D TIR ++WDTAGQER+ +L P Y R++ AA++VYDITN ++F
Sbjct: 29  YQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSF 88

Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
            +   W+ +++     ++                      I L GNK DL   R+     
Sbjct: 89  QQTTKWIDDVRTERGSDVI---------------------IMLVGNKTDLADKRQV-SIE 126

Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225
           EGE  A+E  ++F+ETSAK   NV ++F  +A  LP
Sbjct: 127 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 162

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 2e-08
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNN 352
           +KLV LGE +VGK+SL+ RF+   F    ++TIG +  S          + +L +
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 55

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (199), Expect = 6e-19
 Identities = 62/158 (39%), Positives = 90/158 (56%), Gaps = 22/158 (13%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           +       F  + V +D   I+ +IWDTAGQE + ++   YYR A  A++VYDIT ++TF
Sbjct: 32  HDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 91

Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
               SW+++ ++ +  N+                     VI L GNK+D   SRR V+  
Sbjct: 92  NHLTSWLEDARQHSSSNM---------------------VIMLIGNKSD-LESRRDVKRE 129

Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           EGEA+A E+GL+FMETSAKTA NV E F+  AK++ +K
Sbjct: 130 EGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 167

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 9e-08
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSH 338
           +K +++G++ VGKS L+L+F   +F    + TIG E  +  
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM 44

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (199), Expect = 6e-19
 Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 21/149 (14%)

Query: 76  AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
             F  + + +D      EI DTAG E++ ++  +Y +N Q  I+VY + NQ +F   K  
Sbjct: 37  EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPM 96

Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
             ++ R+                         + + L GNK DL +  R V  SEG A A
Sbjct: 97  RDQIIRV--------------------KRYEKVPVILVGNKVDLES-EREVSSSEGRALA 135

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKL 224
           EE G  FMETSAK+   V+E+F EI +++
Sbjct: 136 EEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 8e-09
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSM 344
           +YK+V+LG   VGKS+L ++FV G F E  + TI    +    +  S 
Sbjct: 3   EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSP 50

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (193), Expect = 4e-18
 Identities = 95/157 (60%), Positives = 115/157 (73%), Gaps = 22/157 (14%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
                 AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++F
Sbjct: 35  QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESF 94

Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
            RAK+WVKELQR A PNI                     VIAL+GNK     ++R V++ 
Sbjct: 95  ARAKNWVKELQRQASPNI---------------------VIALSGNK-ADLANKRAVDFQ 132

Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
           E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 6e-11
 Identities = 35/45 (77%), Positives = 39/45 (86%)

Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSH 338
           KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG    +  
Sbjct: 3   KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQT 47

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 5e-17
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 20/156 (12%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
             +     F+ + + +D   +  +IWDTAGQER+ +L   +YR +   ++ + + +  +F
Sbjct: 35  LFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSF 94

Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
               +W KE    A                     P +    + GNK D+    R V   
Sbjct: 95  QNLSNWKKEFIYYADVK-----------------EPESFPFVILGNKIDIS--ERQVSTE 135

Query: 190 EGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKL 224
           E +A+  +NG   + ETSAK A NV   F E  +++
Sbjct: 136 EAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 4e-08
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNN 353
           K   +K++LLG+  VGKSSL+ R+V  +F      TIG E  +            ++ + 
Sbjct: 3   KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 62

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 1e-16
 Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 22/155 (14%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           +     A+F+T+ + +    +   IWDTAGQER+H L P+YYR++  AI+VYDIT++D+F
Sbjct: 32  HITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSF 91

Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
            + K+WVKEL++M    I           E +R                           
Sbjct: 92  QKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEA-------------------- 131

Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
             E+YAE  G     TSAK    + E+F+++ K++
Sbjct: 132 --ESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 5e-07
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLN 351
            +K+VLLGE  VGK+SLVLR+   +F++   +T+G    +             + 
Sbjct: 3   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 57

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.2 bits (178), Expect = 4e-16
 Identities = 69/158 (43%), Positives = 90/158 (56%), Gaps = 19/158 (12%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
                 AAF+TQ V +++ T++FEIWDTAGQER+ +LAPMYYRNAQAA++VYD+T   +F
Sbjct: 32  KEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSF 91

Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
            +A+ WVKEL   A  +I             +                      R V   
Sbjct: 92  IKARHWVKELHEQASKDIIIALVGNKIDMLQEG-------------------GERKVARE 132

Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           EGE  AEE GLLF ETSAKT  NVN++F+ I +K+P K
Sbjct: 133 EGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.0 bits (110), Expect = 5e-07
 Identities = 24/51 (47%), Positives = 29/51 (56%)

Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMP 345
           +   KLVLLGE+AVGKSS+VLRFV   F E +E TIG    +         
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHT 51

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 73.0 bits (178), Expect = 4e-16
 Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 21/151 (13%)

Query: 77  AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
               + V LD   ++ +I DTAGQE Y  +   Y+R+ +  + V+ IT  ++F     + 
Sbjct: 39  DSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFR 98

Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196
           +++ R+                        N+   L GNK+DL   R+     E +  A+
Sbjct: 99  EQILRVK--------------------EDENVPFLLVGNKSDLEDKRQVSVE-EAKNRAD 137

Query: 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
           +  + ++ETSAKT  NV+++F ++ +++  +
Sbjct: 138 QWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 49.2 bits (116), Expect = 9e-08
 Identities = 16/75 (21%), Positives = 31/75 (41%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPIT 357
           +K++++G   VGKS+L L+F+  +F E  E T     +    +       + L+      
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 64

Query: 358 FVWVIMMIFGCGNVP 372
           +  +    F  G   
Sbjct: 65  YAAIRDNYFRSGEGF 79

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.3 bits (168), Expect = 8e-15
 Identities = 59/135 (43%), Positives = 85/135 (62%), Gaps = 22/135 (16%)

Query: 91  RFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTF 150
           +F IWDTAG ER+  LAPMYYR + AAIIVYDIT ++TF   K+WV+EL++  PP+I   
Sbjct: 54  KFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIV-- 111

Query: 151 GRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTA 210
                              +A+AGNK DL   R  +   + + YA+    +F+ETSAK A
Sbjct: 112 -------------------VAIAGNKCDLTDVREVM-ERDAKDYADSIHAIFVETSAKNA 151

Query: 211 MNVNEIFVEIAKKLP 225
           +N+NE+F+EI++++P
Sbjct: 152 ININELFIEISRRIP 166

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 4e-07
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNN 352
           + K+ LLG++ VGKSS++ RFV   F      TIG    +      +   K  + +
Sbjct: 4   ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 59

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 1e-14
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 28/196 (14%)

Query: 33  GNWFSMMSGKRQSDCMAQIWLKDRVD--CMTQIVINVVFYPYLFSAAFITQTVCLDDVTI 90
           G   S + G ++   +  +   D      +   +        + +  F  +TV   +  +
Sbjct: 1   GKVLSKIFGNKEMRIL--MLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN--V 56

Query: 91  RFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTF 150
           +F +WD  GQ++   L   YY   Q  I V D  ++D    A+                 
Sbjct: 57  KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQE--------------- 101

Query: 151 GRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSAK 208
                  + +      + +I +  NK DLP + +  E  E  G     +       + A 
Sbjct: 102 -----LHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT 156

Query: 209 TAMNVNEIFVEIAKKL 224
           +   + E    +    
Sbjct: 157 SGDGLYEGLTWLTSNY 172

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 7/33 (21%), Positives = 18/33 (54%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 329
           + ++++LG  A GK++++ +   GQ      + 
Sbjct: 12  EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTV 44

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 7e-14
 Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 20/150 (13%)

Query: 77  AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
               + V +D      EI DTAG E++  +  +Y +N Q   +VY IT Q TF   +   
Sbjct: 38  DSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDL- 96

Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196
                                + L+     ++ + L GNK DL   R   +        +
Sbjct: 97  -------------------REQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ 137

Query: 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
                F+E+SAK+ +NVNEIF ++ +++ +
Sbjct: 138 WCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 6e-09
 Identities = 21/76 (27%), Positives = 33/76 (43%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPI 356
           +YKLV+LG   VGKS+L ++FV+G F E  + TI    +    +         L+     
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 357 TFVWVIMMIFGCGNVP 372
            F  +  +    G   
Sbjct: 63  QFTAMRDLYMKNGQGF 78

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 65.4 bits (158), Expect = 3e-13
 Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 22/142 (15%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           ++  +WD  GQ         YY +  A I V D T++D    A                 
Sbjct: 61  LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKE-------------- 106

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
                     LQ     +  + +  NK D P +    E S+       ++     + +SA
Sbjct: 107 ------LHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA 160

Query: 208 KTAMNVNEIFVEIAKKLPKKEV 229
                + E    +   + ++++
Sbjct: 161 IKGEGITEGLDWLIDVIKEEQL 182

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 6/30 (20%), Positives = 17/30 (56%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQ 326
           + ++++LG    GK++++ R   G+    +
Sbjct: 17  ELRILILGLDGAGKTTILYRLQIGEVVTTK 46

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 3e-13
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 22/135 (16%)

Query: 92  FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
            +I DTAGQE Y  +   Y R  +  + V+ I N  +F     + ++++R+         
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-------- 104

Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAM 211
                          ++ + L GNK D   + R VE  + +  A   G+ ++ETSAKT  
Sbjct: 105 ------------DSDDVPMVLVGNKCD--LAARTVESRQAQDLARSYGIPYIETSAKTRQ 150

Query: 212 NVNEIFVEIAKKLPK 226
            V + F  + +++ +
Sbjct: 151 GVEDAFYTLVREIRQ 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 1e-08
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSH 338
           +YKLV++G   VGKS+L ++ ++  F +  + TI    +   
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV 44

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.7 bits (156), Expect = 4e-13
 Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 25/156 (16%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL-APMYYRNAQAAIIVYDITNQDT 128
                   F  + V +D   I+ ++WDTAGQER+       YYRN  A + VYD+TN  +
Sbjct: 31  TEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMAS 90

Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
           F    +W++E ++    N                    +I   L GNK DL +    V  
Sbjct: 91  FHSLPAWIEECKQHLLAN--------------------DIPRILVGNKCDLRS-AIQVPT 129

Query: 189 SEGEAYAEENGLLFMETSAKTAM---NVNEIFVEIA 221
              + +A+ + +   ETSAK      +V  IF+ +A
Sbjct: 130 DLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 7e-08
 Identities = 15/41 (36%), Positives = 27/41 (65%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSH 338
           +K++++G+S VGK+ L  RF  G+F +  E+TIG + +   
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERA 43

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 5e-13
 Identities = 32/187 (17%), Positives = 51/187 (27%), Gaps = 48/187 (25%)

Query: 77  AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
                TV +        ++DTAGQE Y  L P+ Y      ++ + + +  +F   K   
Sbjct: 38  DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 97

Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE--------- 187
                   P                          L G + DL      +E         
Sbjct: 98  VPEITHHCPKT---------------------PFLLVGTQIDLRDDPSTIEKLAKNKQKP 136

Query: 188 --YSEGEAYAEE-NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEA 244
                 E  A +   + ++E SA T   +  +F E      +                  
Sbjct: 137 ITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP---------------PE 181

Query: 245 PKTSNCC 251
           PK S  C
Sbjct: 182 PKKSRRC 188

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 1e-08
 Identities = 12/73 (16%), Positives = 28/73 (38%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPIT 357
            K V++G+ AVGK+ L++ +   +F      T+      +  I     T    +      
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63

Query: 358 FVWVIMMIFGCGN 370
           +  +  + +   +
Sbjct: 64  YDRLRPLSYPQTD 76

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (155), Expect = 6e-13
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 21/152 (13%)

Query: 77  AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
              T+   +DD   R +I DTAGQE +  +   Y R  +  ++V+ +T++ +F     + 
Sbjct: 40  DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQ 99

Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196
           +++ R+                           + L GNKADL   R+  +  EG+  A 
Sbjct: 100 RQILRV--------------------KDRDEFPMILIGNKADLDHQRQVTQE-EGQQLAR 138

Query: 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
           +  + +ME SAK  MNV++ F E+ + + K +
Sbjct: 139 QLKVTYMEASAKIRMNVDQAFHELVRVIRKFQ 170

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 3e-08
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNN 353
           +Y+LV++G   VGKS+L ++F++  F    + TI         I       + L+  
Sbjct: 5   KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTA 61

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 6e-13
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 33/160 (20%)

Query: 77  AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
              +  V +D   +   +WDTAGQE Y  L P+ Y     ++I + + +  +F   ++  
Sbjct: 40  DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKW 99

Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE--------- 187
               R   PN                       I L G K DL   +  +E         
Sbjct: 100 YPEVRHHCPNT---------------------PIILVGTKLDLRDDKDTIEKLKEKKLTP 138

Query: 188 --YSEGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKL 224
             Y +G A A+E G + ++E SA T   +  +F E  + +
Sbjct: 139 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 7e-07
 Identities = 10/74 (13%), Positives = 27/74 (36%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPI 356
             K V++G+ AVGK+ L++ +    F      T+     ++  +          +     
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 357 TFVWVIMMIFGCGN 370
            +  +  + +   +
Sbjct: 65  DYDRLRPLSYPQTD 78

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 7e-13
 Identities = 31/159 (19%), Positives = 52/159 (32%), Gaps = 33/159 (20%)

Query: 77  AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
                +V +        ++DTAGQE Y  L P+ Y      +I + + N  +F   K   
Sbjct: 44  DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEW 103

Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC----------- 185
               +   PN+                        L G + DL    +            
Sbjct: 104 VPELKEYAPNV---------------------PFLLIGTQIDLRDDPKTLARLNDMKEKP 142

Query: 186 VEYSEGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKK 223
           +   +G+  A+E G   ++E SA T   +  +F E    
Sbjct: 143 ICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 181

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
            K V++G+ AVGK+ L++ +    F E    T+
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV 42

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 1e-12
 Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 22/149 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
                  ++   I F +WD  GQ++   L   Y++N Q  I V D  +++    A+    
Sbjct: 32  IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREE-- 89

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT--SRRCVEYSEGEAYA 195
                              ++ L      + V+ +  NK DLP   +   +    G    
Sbjct: 90  ------------------LMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 131

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKL 224
                    T A +   + E    ++ +L
Sbjct: 132 RHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 6e-05
 Identities = 5/31 (16%), Positives = 17/31 (54%)

Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQEST 329
           +++++G  A GK++++ +   G+      + 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTI 32

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.8 bits (151), Expect = 2e-12
 Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 18/145 (12%)

Query: 84  CLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMA 143
              D     ++WDTAGQER+ +L   +YR A   ++VYD+TN  +F   KSW  E    A
Sbjct: 46  VDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA 105

Query: 144 PPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG-LLF 202
             N                 +P      + GNK D   S++ V     +  A+  G +  
Sbjct: 106 NVN-----------------SPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL 148

Query: 203 METSAKTAMNVNEIFVEIAKKLPKK 227
             TSAK A+NV+  F EIA+   ++
Sbjct: 149 FLTSAKNAINVDTAFEEIARSALQQ 173

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPT 346
            K+++LG+S VGK+SL+ R+V  ++ +  ++TIG +  +          
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKV 51

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (149), Expect = 4e-12
 Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 21/152 (13%)

Query: 77  AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
              T+   +D +  R +I DTAGQE +  +   Y R     ++V+ I ++ +F       
Sbjct: 41  DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLF 100

Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196
            ++ R+                        +  + L GNKADL + R+         +  
Sbjct: 101 TQILRVK--------------------DRDDFPVVLVGNKADLESQRQVPRSEASA-FGA 139

Query: 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
            + + + E SAK  +NV+E F ++ + + K +
Sbjct: 140 SHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 171

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 3e-07
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQ 326
            +KLV++G   VGKS+L ++F++  F    
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDY 35

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 4e-11
 Identities = 22/149 (14%), Positives = 43/149 (28%), Gaps = 22/149 (14%)

Query: 78  FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
             +    +     RF +WD  GQE   +    YY N +  I+V D T+++     +    
Sbjct: 47  IGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE-- 104

Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR--RCVEYSEGEAYA 195
                               K L         + +  NK D+        +         
Sbjct: 105 ------------------LYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI 146

Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKL 224
           +++        A T   + +    +  +L
Sbjct: 147 KDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 7e-05
 Identities = 5/31 (16%), Positives = 17/31 (54%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQE 327
           ++K++++G    GK++++ +F   +      
Sbjct: 15  EHKVIIVGLDNAGKTTILYQFSMNEVVHTSP 45

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.5 bits (140), Expect = 5e-11
 Identities = 32/145 (22%), Positives = 64/145 (44%), Gaps = 22/145 (15%)

Query: 84  CLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMA 143
            +D+     ++ DTAGQE +  +   Y R     +IVY +T++ +F     + + + R+ 
Sbjct: 46  EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV- 104

Query: 144 PPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFM 203
                                  +  + L  NK DL    R V   +G+  A +  + ++
Sbjct: 105 -------------------KDRESFPMILVANKVDLMH-LRKVTRDQGKEMATKYNIPYI 144

Query: 204 ETSAKTA-MNVNEIFVEIAKKLPKK 227
           ETSAK   +NV++ F ++ + + ++
Sbjct: 145 ETSAKDPPLNVDKTFHDLVRVIRQQ 169

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 18/74 (24%), Positives = 30/74 (40%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPIT 357
           YKLV++G+  VGKS+L ++F +  F    + TI         I       + L+      
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 64

Query: 358 FVWVIMMIFGCGNV 371
           F  +       G+ 
Sbjct: 65  FSAMREQYMRTGDG 78

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (140), Expect = 5e-11
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 23/155 (14%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           Y       F+ + + ++D  +R  +WDTAGQE +  +   YYR AQA ++V+  T++++F
Sbjct: 31  YKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESF 90

Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
                                  A S  +E       +I  AL  NK D      C++  
Sbjct: 91  ----------------------EAISSWREKVVAEVGDIPTALVQNKID-LLDDSCIKNE 127

Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
           E E  A+   L F  TS K  +NV+E+F  +A+K 
Sbjct: 128 EAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 7e-06
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSH 338
           K+V++G  AVGKSS++ R+ +G F +  + TIG +     
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQ 43

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.9 bits (141), Expect = 6e-11
 Identities = 37/164 (22%), Positives = 59/164 (35%), Gaps = 34/164 (20%)

Query: 77  AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
              T +  +D   I   +WDT+G   Y  + P+ Y ++ A +I +DI+  +T        
Sbjct: 37  ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 96

Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RC 185
           K   +   PN                       + L G K+DL T               
Sbjct: 97  KGEIQEFCPNTK---------------------MLLVGCKSDLRTDVSTLVELSNHRQTP 135

Query: 186 VEYSEGEAYAEENG-LLFMETSAKTAMN-VNEIFVEIAKKLPKK 227
           V Y +G   A++ G   ++E SA  + N V +IF         K
Sbjct: 136 VSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 179

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
           + K+V++G+S  GK++L+  F +  F E    T+
Sbjct: 2   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 35

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 1e-10
 Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 11/149 (7%)

Query: 77  AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
                 + +D   +   +WDTAG E Y  L P+ Y +    ++ + I + D+        
Sbjct: 37  ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW 96

Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196
               +   PN+                            +      +  V+  EG   A 
Sbjct: 97  TPEVKHFCPNVPIILVGNKKDLRNDEHT----------RRELAKMKQEPVKPEEGRDMAN 146

Query: 197 ENGLL-FMETSAKTAMNVNEIFVEIAKKL 224
             G   +ME SAKT   V E+F    +  
Sbjct: 147 RIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 4e-09
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPT 346
           + KLV++G+ A GK+ L++   + QF E    T+     +   +      
Sbjct: 2   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVE 51

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.0 bits (136), Expect = 2e-10
 Identities = 46/142 (32%), Positives = 65/142 (45%), Gaps = 18/142 (12%)

Query: 87  DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPN 146
           D  +  +IWDTAGQER+ +L   +YR A   ++V+D+T  +TF    SW  E    A P 
Sbjct: 48  DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASP- 106

Query: 147 IDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETS 206
                             P N    + GNK DL   R+            +N + + ETS
Sbjct: 107 ----------------RDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETS 149

Query: 207 AKTAMNVNEIFVEIAKKLPKKE 228
           AK A+NV + F  IA+   K+E
Sbjct: 150 AKEAINVEQAFQTIARNALKQE 171

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.0 bits (123), Expect = 1e-08
 Identities = 16/72 (22%), Positives = 35/72 (48%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPIT 357
            K+++LG+S VGK+SL+ ++V  +F    ++TIG +  +   +        ++ +     
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 358 FVWVIMMIFGCG 369
               + + F  G
Sbjct: 63  RFQSLGVAFYRG 74

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 56.5 bits (135), Expect = 3e-10
 Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 22/138 (15%)

Query: 89  TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNID 148
             +  +WD  GQ +       Y+ N    I V D  ++  F                   
Sbjct: 59  GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQE------------- 105

Query: 149 TFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETS 206
                    + L+      + + +  NK DL T+    E +E        +        S
Sbjct: 106 -------LTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCS 158

Query: 207 AKTAMNVNEIFVEIAKKL 224
           A T   V +    + K +
Sbjct: 159 ALTGEGVQDGMNWVCKNV 176

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 6/33 (18%), Positives = 15/33 (45%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 329
           + +++LLG    GK++L+ +           + 
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDISHITPTQ 48

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 4e-10
 Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 20/142 (14%)

Query: 89  TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNID 148
               +I DT G  ++  +  +      A I+VY IT++ +    K   +++  +      
Sbjct: 49  ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDV-- 106

Query: 149 TFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAK 208
                             +I I L GNK D  +  R V+ SE EA A      FMETSAK
Sbjct: 107 -----------------ESIPIMLVGNKCD-ESPSREVQSSEAEALARTWKCAFMETSAK 148

Query: 209 TAMNVNEIFVEIAKKLPKKEVN 230
              NV E+F E+     ++ V+
Sbjct: 149 LNHNVKELFQELLNLEKRRTVS 170

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 5e-09
 Identities = 22/74 (29%), Positives = 33/74 (44%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPIT 357
           Y++ + G   VGKSSLVLRFV+G F E    T+    +   S   S+ T    +      
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62

Query: 358 FVWVIMMIFGCGNV 371
           F  +  +    G+ 
Sbjct: 63  FPAMQRLSISKGHA 76

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 1e-09
 Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 3/144 (2%)

Query: 88  VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL-QRMAPPN 146
           +T  +++ +    E+Y     +  +     I          F      V  +       +
Sbjct: 26  LTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAKFSGWADAVIFVFSLEDENS 85

Query: 147 IDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS--RRCVEYSEGEAYAEENGLLFME 204
                R    +  L+      + +AL G +  +  S  R   +       A+     + E
Sbjct: 86  FQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYE 145

Query: 205 TSAKTAMNVNEIFVEIAKKLPKKE 228
           T A   +NV+ +F E+A+K+    
Sbjct: 146 TCATYGLNVDRVFQEVAQKVVTLR 169

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 8e-08
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 329
           I + +L +LG++  GKSSL+ RF+ G +   +++ 
Sbjct: 3   IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE 37

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 4e-09
 Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 25/159 (15%)

Query: 70  YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
           Y               +   I+F +WDTAGQE++  L   YY  AQ AII++D+T++ T+
Sbjct: 32  YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTY 91

Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
               +W ++                            NI I L GNK D+   +   +  
Sbjct: 92  KNVPNWHRD----------------------LVRVCENIPIVLCGNKVDIKDRKVKAKS- 128

Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
               +  +  L + + SAK+  N  + F+ +A+KL    
Sbjct: 129 --IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 165

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 2e-08
 Identities = 17/72 (23%), Positives = 32/72 (44%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPI 356
           Q+KLVL+G+   GK++ V R + G+F +   +T+G E       +   P K  + +    
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62

Query: 357 TFVWVIMMIFGC 368
                +   +  
Sbjct: 63  EKFGGLRDGYYI 74

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 6e-09
 Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 21/150 (14%)

Query: 77  AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
              T+ + ++      ++ DTAGQ+ Y      Y  +    I+VY +T+  +F   K   
Sbjct: 39  NTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVI- 97

Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196
                                K L  +    I I L GNK DL    R + Y EG+A AE
Sbjct: 98  -------------------HGKLLDMVGKVQIPIMLVGNKKDLHM-ERVISYEEGKALAE 137

Query: 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
                F+E+SAK      ++F  I  +  K
Sbjct: 138 SWNAAFLESSAKENQTAVDVFRRIILEAEK 167

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 2e-06
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQ 335
             K+ +LG  +VGKSSL ++FV GQF +  + TI     
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT 42

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-08
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 156 WVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNE 215
            ++  +     +I I L GNK+DL   R      EG A A      F+ETSA    NV E
Sbjct: 100 RIQLRRARQTEDIPIILVGNKSDLVRCREVSVS-EGRACAVVFDCKFIETSAAVQHNVKE 158

Query: 216 IFVEIAKKLPKKE 228
           +F  I +++  + 
Sbjct: 159 LFEGIVRQVRLRR 171

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-06
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 1/74 (1%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQF-HEYQESTIGGECQSSHSISFSMPTKNRLNNNVPI 356
           Y++VL+GE  VGKS+L   F       +     +G +      +         L +    
Sbjct: 4   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 63

Query: 357 TFVWVIMMIFGCGN 370
                 +       
Sbjct: 64  KGENEWLHDHCMQV 77

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 2e-08
 Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 23/145 (15%)

Query: 84  CLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMA 143
            +DD  +  EI DTAGQE        + R  +  ++VYDIT++ +F         L  + 
Sbjct: 44  TIDDEVVSMEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI- 101

Query: 144 PPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFM 203
                                P N+ + L GNKADL    R V   EGE  A E    F 
Sbjct: 102 -------------------KKPKNVTLILVGNKADL-DHSRQVSTEEGEKLATELACAFY 141

Query: 204 ETSAKTA-MNVNEIFVEIAKKLPKK 227
           E SA T   N+ EIF E+ +++ ++
Sbjct: 142 ECSACTGEGNITEIFYELCREVRRR 166

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 3e-08
 Identities = 15/76 (19%), Positives = 31/76 (40%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPI 356
           + KL + G + VGKS+LV+RF+  +F    + T+    +   +I   + +   L+     
Sbjct: 2   EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 61

Query: 357 TFVWVIMMIFGCGNVP 372
             +     +       
Sbjct: 62  DTIQREGHMRWGEGFV 77

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 3e-08
 Identities = 17/75 (22%), Positives = 28/75 (37%)

Query: 154 KSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNV 213
                +L+R    + V  +           R V   EG A A      F+ETSA    NV
Sbjct: 91  SELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNV 150

Query: 214 NEIFVEIAKKLPKKE 228
             +F  + +++  + 
Sbjct: 151 QALFEGVVRQIRLRR 165

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 2e-07
 Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 2/71 (2%)

Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPIT 357
           YK++LLG   VGKS+L   F   +      +   G       +         + +     
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPE--AEAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 358 FVWVIMMIFGC 368
               +      
Sbjct: 60  GGRWLPGHCMA 70

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 50.1 bits (118), Expect = 5e-08
 Identities = 22/155 (14%), Positives = 42/155 (27%), Gaps = 22/155 (14%)

Query: 75  SAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
           S         L+    +  IWD  GQ+   +    Y+ +    I V D  ++      + 
Sbjct: 31  SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQR 90

Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GE 192
            ++ L                              + +  NK DLP +  C    E    
Sbjct: 91  ELQSLLVE--------------------ERLAGATLLIFANKQDLPGALSCNAIQEALEL 130

Query: 193 AYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
                +       SA T  ++      +   +  +
Sbjct: 131 DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 6/30 (20%), Positives = 15/30 (50%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQ 326
           + +L++LG    GK++++ +F         
Sbjct: 2   ELRLLMLGLDNAGKTTILKKFNGEDVDTIS 31

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.8 bits (112), Expect = 3e-07
 Identities = 18/148 (12%), Positives = 45/148 (30%), Gaps = 11/148 (7%)

Query: 75  SAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
              +   +  L    I+F  +D  G  +   L   Y+      + + D  + + F  A+ 
Sbjct: 29  QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARV 88

Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194
            +  L  +A                +            A ++A+L ++   +  +  +  
Sbjct: 89  ELDALFNIAELK--------DVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRI 137

Query: 195 AEENGLLFMETSAKTAMNVNEIFVEIAK 222
             +  +     S        E F  +++
Sbjct: 138 EGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (94), Expect = 6e-05
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQ 326
           KL+ LG    GK++L+      +    Q
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATLQ 29

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 5e-07
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 22/142 (15%)

Query: 89  TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNID 148
            ++F++WD  G          YY N  A I V D  ++D  G +KS              
Sbjct: 48  NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSE------------- 94

Query: 149 TFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE--YSEGEAYAEENGLLFMETS 206
                   V  L+       ++ +  NK D+  +    E   S G    ++      +TS
Sbjct: 95  -------LVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTS 147

Query: 207 AKTAMNVNEIFVEIAKKLPKKE 228
           A     ++E    + + L  ++
Sbjct: 148 ATKGTGLDEAMEWLVETLKSRQ 169

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 6/31 (19%), Positives = 16/31 (51%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQE 327
           + ++++LG    GK++++ R   G+      
Sbjct: 5   EMRILILGLDGAGKTTILYRLQVGEVVTTIP 35

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 7e-07
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 156 WVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSAKTAMNV 213
               L +     I + + GNK DLP +    E  E    +  ++  +     S K   N+
Sbjct: 93  LHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNI 152

Query: 214 NEIFVEIAK 222
           +     + +
Sbjct: 153 DITLQWLIQ 161

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 4e-06
 Identities = 12/72 (16%), Positives = 25/72 (34%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPI 356
           + +L L+G    GK++ V     GQF+E    T+G   +     + ++   +        
Sbjct: 2   EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFR 61

Query: 357 TFVWVIMMIFGC 368
           +           
Sbjct: 62  SMWERYCRGVSA 73

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
           + KL+LLG    GKS+ + +            T G
Sbjct: 2   ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTG 34

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 14/161 (8%), Positives = 40/161 (24%), Gaps = 15/161 (9%)

Query: 82  TVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRA--------- 132
               D  ++ F + D  GQ          + N  + + +  ++  D              
Sbjct: 37  EYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEE 96

Query: 133 --KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY-- 188
               +   +      N              +++   ++V            ++   E+  
Sbjct: 97  SKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFIL 156

Query: 189 --SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
                     +  +    T A    N+  +F  +   + + 
Sbjct: 157 KMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 197

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 4/35 (11%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            ++L+LLG    GKS++V +            T G
Sbjct: 6   THRLLLLGAGESGKSTIVKQMRILHV----VLTSG 36

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 15/70 (21%), Positives = 24/70 (34%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPI 356
           + KL+LLG    GKS++V +                  +  H   F +  +         
Sbjct: 2   EVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 61

Query: 357 TFVWVIMMIF 366
            F  V  +IF
Sbjct: 62  CFEGVTAIIF 71

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.1 bits (95), Expect = 8e-05
 Identities = 21/173 (12%), Positives = 38/173 (21%), Gaps = 37/173 (21%)

Query: 81  QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
                    + F+++D  GQ          +    A I    +++ D        +  + 
Sbjct: 33  VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMH 92

Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
                        K +          +  I L  NK       +  +      Y E  G 
Sbjct: 93  ESM----------KLFDSICNNKWFTDTSIILFLNK-KDLFEEKIKKSPLTICYPEYAGS 141

Query: 201 LFM--------------------------ETSAKTAMNVNEIFVEIAKKLPKK 227
                                         T A    NV  +F  +   + K 
Sbjct: 142 NTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 14/135 (10%), Positives = 32/135 (23%), Gaps = 6/135 (4%)

Query: 90  IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
           + F  +D  G  +   +   Y       + + D  + +    +K  +  L        + 
Sbjct: 57  MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIA-NV 115

Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
                    +         +  + G            + S          L     S   
Sbjct: 116 PILILGNKIDRPEAISEERLREMFGLYGQTT-----GKGSVSLKELNARPLEVFMCSVLK 170

Query: 210 AMNVNEIFVEIAKKL 224
                E F  +A+ +
Sbjct: 171 RQGYGEGFRWMAQYI 185

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 41.2 bits (95), Expect = 6e-05
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQ 335
             KLV LG    GK++L+      +  ++  +      +
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 51

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (95), Expect = 7e-05
 Identities = 18/149 (12%), Positives = 40/149 (26%), Gaps = 13/149 (8%)

Query: 81  QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
                +   + F++ D  GQ          + +  + + +   +  D           L 
Sbjct: 35  HEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLT 94

Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
                          +   +      N+ I L  NK DL    +    S  + + E  G 
Sbjct: 95  ES----------LNIFETIVNNRVFSNVSIILFLNKTDLLE-EKVQVVSIKDYFLEFEGD 143

Query: 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEV 229
                  +    + E F    +   ++ +
Sbjct: 144 PHCLRDVQK--FLVECFRGKRRDQQQRPL 170

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (94), Expect = 9e-05
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
             K++LLG    GKS+ + +    +    Q+ T G
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKG 33

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
            ++ +G    GK+ L +R + GQ+ +  +++I 
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSIT 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	373
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.97
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.97
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.97
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.97
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.97
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.97
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.97
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.96
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.96
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.96
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.95
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.95
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.93
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.92
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.92
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.91
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.88
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.84
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.83
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.83
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.82
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.8
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.77
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.77
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.75
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.74
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.71
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.69
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.68
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.67
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.66
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.65
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.64
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.63
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.55
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.55
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.53
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.51
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.5
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.44
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.41
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.29
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.29
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.27
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.25
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.24
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	99.15
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.08
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.03
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	98.99
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.98
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.97
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.96
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.95
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.91
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	98.9
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	98.89
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	98.89
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.88
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	98.87
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.87
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.85
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	98.85
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	98.84
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	98.84
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	98.84
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.83
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	98.83
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	98.83
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.82
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.82
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	98.81
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.8
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	98.79
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	98.79
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	98.79
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.77
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	98.77
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	98.76
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.74
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	98.71
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.7
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	98.7
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	98.69
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.67
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.64
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.63
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.63
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	98.61
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	98.5
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.49
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.49
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	98.43
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	98.42
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	98.42
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.4
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.39
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.33
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.3
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.27
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	98.11
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.08
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.91
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.91
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.89
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	97.89
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	97.87
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.87
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	97.81
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	97.79
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	97.65
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.6
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	97.52
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.51
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.42
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.4
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.02
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.97
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.6
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.55
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.35
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.29
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.21
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.2
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.98
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.68
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.48
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.32
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.22
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	94.34
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	93.07
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	92.77
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	92.31
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	92.28
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	91.47
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	91.11
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	90.93
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	90.62
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	90.45
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	90.12
d1j8yf2	211	GTPase domain of the signal sequence recognition p	89.28
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	87.99
d1okkd2	207	GTPase domain of the signal recognition particle r	87.55
d2qy9a2	211	GTPase domain of the signal recognition particle r	86.87
d1vmaa2	213	GTPase domain of the signal recognition particle r	86.73
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	86.57
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	86.05
d1ls1a2	207	GTPase domain of the signal sequence recognition p	85.48
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	83.07
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	83.04
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	82.54
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	82.15

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-32  Score=234.20  Aligned_cols=161  Identities=24%  Similarity=0.287  Sum_probs=130.9

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI  123 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~  123 (373)
                      .|++++|+   |||||+++|.+..+... +.+.+.+.+.+.+++..+.+.+||++|++++..++..+++++|++++|||+
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~   81 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV   81 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence            58899998   99999999999888766 444455567889999999999999999999999999999999999999999


Q ss_pred             CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEE
Q psy18160        124 TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFM  203 (373)
Q Consensus       124 ~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~  203 (373)
                      +++.||+++..|+.++...                    .....+|++|||||+|+.+. +.++.++++++++.++++|+
T Consensus        82 t~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilvgnK~Dl~~~-~~v~~~~~~~~~~~~~~~~~  140 (168)
T d2gjsa1          82 TDKGSFEKASELRVQLRRA--------------------RQTDDVPIILVGNKSDLVRS-REVSVDEGRACAVVFDCKFI  140 (168)
T ss_dssp             TCHHHHHHHHHHHHHHHHH--------------------CC--CCCEEEEEECTTCGGG-CCSCHHHHHHHHHHHTSEEE
T ss_pred             cccccccccccccchhhcc--------------------cccccceEEEeecccchhhh-cchhHHHHHHHHHhcCCEEE
Confidence            9999999999999988762                    23467899999999999775 77899999999999999999


Q ss_pred             EEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        204 ETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       204 evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      ||||++|.||+++|+.|++.+..++.
T Consensus       141 e~Sak~~~~v~~~f~~l~~~i~~~~~  166 (168)
T d2gjsa1         141 ETSAALHHNVQALFEGVVRQIRLRRD  166 (168)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCcCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999998876543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-32  Score=232.71  Aligned_cols=166  Identities=25%  Similarity=0.401  Sum_probs=148.8

Q ss_pred             CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160         42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~  116 (373)
                      +++...+|++++|+   |||||++||++++|...  +...++..+.+.+++..+.+.+||++|++++..++..+++++|+
T Consensus         1 p~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            45667799999998   99999999999999877  33456677889999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE  196 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~  196 (373)
                      +++|||++++.||+.+.+|+..+.+.                    ....++|++|||||+|+.+. +.+..+++.++++
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~p~ilvgnK~Dl~~~-~~~~~~~~~~~~~  139 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRV--------------------KDRDDFPVVLVGNKADLESQ-RQVPRSEASAFGA  139 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHH--------------------HTSSCCCEEEEEECGGGGGG-CCSCHHHHHHHHH
T ss_pred             eeeecccccccccchhhhhhHHHHHH--------------------hccCCCceEEEEEeechhhc-cccchhhhhHHHH
Confidence            99999999999999999999887652                    24468899999999999765 6788899999999


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      .++++|++|||++|.||+++|+.|++.+.+++
T Consensus       140 ~~~~~~~e~Sak~g~gv~e~f~~l~~~i~k~~  171 (173)
T d2fn4a1         140 SHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ  171 (173)
T ss_dssp             HTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             hcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999887544

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-31  Score=227.04  Aligned_cols=158  Identities=27%  Similarity=0.370  Sum_probs=143.6

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      +.+|++++|+   |||||++||+++.|...   |++.++ .+.+.+++..+.+.+||++|++++..++..+++++|++++
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            4579999998   99999999999998876   888776 5788899999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||+++++||+.+.+|+..+.+.                    ....++|++|||||+|+... +.++.+++++++++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilvgnK~Dl~~~-r~v~~~~~~~~a~~~~  140 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDM--------------------VGKVQIPIMLVGNKKDLHME-RVISYEEGKALAESWN  140 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH--------------------HCSSCCCEEEEEECTTCGGG-CCSCHHHHHHHHHHHT
T ss_pred             hcccchhhhhhhhhhhhhhhhhc--------------------ccccccceeeeccccccccc-cchhHHHHHHHHHHcC
Confidence            99999999999999999888762                    34568999999999999765 7799999999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++|+|+||++|.||+++|+.|++++.
T Consensus       141 ~~~~e~Sak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         141 AAFLESSAKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             CEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEecCCCCCHHHHHHHHHHHhc
Confidence            99999999999999999999988764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.5e-31  Score=228.16  Aligned_cols=156  Identities=29%  Similarity=0.509  Sum_probs=144.5

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|+   |||||++||++++|...   |++.++.......++..+.+.+|||+|++++..+++.+++++|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            378999998   99999999999988776   899899889999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.||+.+..|+.++.+.                      .+++|++|||||+|+.++ +.++.++++++++.+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~----------------------~~~~~iilVgnK~Dl~~~-~~v~~~~~~~~~~~~~~  138 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAE----------------------VGDIPTALVQNKIDLLDD-SCIKNEEAEGLAKRLKL  138 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH----------------------HCSCCEEEEEECGGGGGG-CSSCHHHHHHHHHHHTC
T ss_pred             Eeccchhhhhhccccccccccc----------------------CCCceEEEeeccCCcccc-eeeeehhhHHHHHHcCC
Confidence            9999999999999999988762                      257899999999999765 77999999999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +|+|+||++|.||+++|+.|++++.
T Consensus       139 ~~~e~Sak~g~~v~e~f~~l~~~~l  163 (164)
T d1z2aa1         139 RFYRTSVKEDLNVSEVFKYLAEKHL  163 (164)
T ss_dssp             EEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             EEEEeccCCCcCHHHHHHHHHHHHh
Confidence            9999999999999999999998875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-31  Score=228.10  Aligned_cols=157  Identities=36%  Similarity=0.667  Sum_probs=138.1

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|+   |||||++||+++.|.+.   |++.++..+.+..++..+.+.+||++|++++..+++.+++++|++++|
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   82 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV   82 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence            368899997   99999999999999887   888899889999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||+++++||+.+..|+..+..                     ......|++|||||+|+..+ +.++.++++++++.+++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~---------------------~~~~~~~~ilvgnK~Dl~~~-~~v~~~e~~~~a~~~~~  140 (167)
T d1z08a1          83 YDITDEDSFQKVKNWVKELRK---------------------MLGNEICLCIVGNKIDLEKE-RHVSIQEAESYAESVGA  140 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHH---------------------HHGGGSEEEEEEECGGGGGG-CCSCHHHHHHHHHHTTC
T ss_pred             EeCCchhHHHhhhhhhhhccc---------------------ccccccceeeeccccccccc-cccchHHHHHHHHHcCC
Confidence            999999999999999887765                     23467899999999999776 78999999999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +|+||||++|.||+++|++|++.+.
T Consensus       141 ~~~e~Sak~~~~v~e~F~~l~~~i~  165 (167)
T d1z08a1         141 KHYHTSAKQNKGIEELFLDLCKRMI  165 (167)
T ss_dssp             EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             eEEEEecCCCcCHHHHHHHHHHHHh
Confidence            9999999999999999999998876

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.3e-31  Score=226.78  Aligned_cols=158  Identities=31%  Similarity=0.618  Sum_probs=144.8

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|+   |||||+++|++++|.+.   +++.++..+.+.+++..+.+.+|||+|+++|..+++.+++++|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            468888887   99999999999998776   888889999999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.+|+.+.+|+..+.+                     .....+|++|||||+|+.+. +.++.++++++++.+++
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~~~ilvgnK~D~~~~-~~v~~~~~~~~~~~~~~  142 (171)
T d2ew1a1          85 YDITCEESFRCLPEWLREIEQ---------------------YASNKVITVLVGNKIDLAER-REVSQQRAEEFSEAQDM  142 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECGGGGGG-CSSCHHHHHHHHHHHTC
T ss_pred             eecccchhhhhhhhhhhhhcc---------------------cccccccEEEEEeecccccc-cchhhhHHHHHHHhCCC
Confidence            999999999999999888876                     34568899999999998765 67889999999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      +|++|||++|.||+++|.+|++++..
T Consensus       143 ~~~~~SAktg~gV~e~f~~l~~~l~~  168 (171)
T d2ew1a1         143 YYLETSAKESDNVEKLFLDLACRLIS  168 (171)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEEEccCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999988764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=9.1e-31  Score=224.56  Aligned_cols=158  Identities=23%  Similarity=0.387  Sum_probs=142.7

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|+   |||||++||++++|.+.   |++.. +.+.+.+++..+.+++||++|++++..+++.+++++|++++|
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDS-YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEE-EEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeec-cccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            478999998   99999999999998876   66654 467788999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||+++++||+.+..|+..+.+.                    ....++|++|||||+|+... +.++.++++++++.+++
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~--------------------~~~~~~p~ilvgnK~Dl~~~-~~v~~e~~~~~~~~~~~  141 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRV--------------------KDRESFPMILVANKVDLMHL-RKVTRDQGKEMATKYNI  141 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH--------------------HTSSCCCEEEEEECTTCSTT-CCSCHHHHHHHHHHHTC
T ss_pred             cccccchhhhccchhhHHHHhh--------------------ccccCccEEEEecccchhhh-ceeehhhHHHHHHHcCC
Confidence            9999999999999999988762                    23467899999999999876 78999999999999999


Q ss_pred             eEEEEcCCCCC-CHHHHHHHHHHHcch
Q psy18160        201 LFMETSAKTAM-NVNEIFVEIAKKLPK  226 (373)
Q Consensus       201 ~~~evSak~~~-gI~~lf~~L~~~i~~  226 (373)
                      +|+|+|||++. ||+++|+.|++.+.+
T Consensus       142 ~~~e~Sak~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         142 PYIETSAKDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             CEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence            99999999886 999999999998764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.4e-30  Score=222.78  Aligned_cols=158  Identities=44%  Similarity=0.749  Sum_probs=145.9

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      +.+|++++|+   |||||++||++++|.+.   |.+..+....+..++....+.+||++|++++..++..+++++|++++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            3578999998   99999999999999877   88888888888889999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||++++++|+.+..|+..+..                     ...++.|++|||||+|+.+. +.+..++++++++.++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~iilvgnK~Dl~~~-~~v~~~~~~~~~~~~~  140 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQ---------------------HGPPSIVVAIAGNKCDLTDV-REVMERDAKDYADSIH  140 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH---------------------HSCTTSEEEEEEECTTCGGG-CCSCHHHHHHHHHHTT
T ss_pred             EeeechhhhhhhHHHhhhhhhh---------------------ccCCcceEEEecccchhccc-cchhHHHHHHHHHHcC
Confidence            9999999999999999888776                     45578999999999999765 7799999999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++|+||||++|.||+++|.+|+++++
T Consensus       141 ~~~~e~SAk~~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         141 AIFVETSAKNAININELFIEISRRIP  166 (167)
T ss_dssp             CEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             CEEEEEecCCCCCHHHHHHHHHHhCC
Confidence            99999999999999999999999874

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=8.5e-31  Score=224.58  Aligned_cols=158  Identities=30%  Similarity=0.541  Sum_probs=144.0

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|+   |||||++||++++|.+.   +++.++..+.+..++..+.+++|||+|+++|..+++.+++++|++|+|
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv   84 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM   84 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            467888887   99999999999988776   888888888999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||+++++++..+..|+..+..                     ......|+++||||+|+.+. +.++.++++++++.+++
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~iivv~nK~D~~~~-~~v~~~~~~~~~~~~~~  142 (169)
T d3raba_          85 YDITNEESFNAVQDWSTQIKT---------------------YSWDNAQVLLVGNKCDMEDE-RVVSSERGRQLADHLGF  142 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHH---------------------HCCSCCEEEEEEECTTCGGG-CCSCHHHHHHHHHHHTC
T ss_pred             EECccchhhhhhhhhhhhhhc---------------------ccCCcceEEEEEeecccccc-cccchhhhHHHHHHcCC
Confidence            999999999999988877766                     45578999999999998765 67889999999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      +|++|||++|.||+++|++|++.+.+
T Consensus       143 ~~~e~Sak~g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         143 EFFEASAKDNINVKQTFERLVDVICE  168 (169)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHHT
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            99999999999999999999998764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.8e-31  Score=229.11  Aligned_cols=164  Identities=21%  Similarity=0.293  Sum_probs=141.3

Q ss_pred             cCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccC
Q psy18160         40 SGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRN  113 (373)
Q Consensus        40 ~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~  113 (373)
                      ...|....+|++++|+   |||||++||+++.|...   |++ ++..+.+.+++..+.+.+||++|+++|..++..++++
T Consensus         2 ~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~   80 (185)
T d2atxa1           2 AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM   80 (185)
T ss_dssp             SSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred             CCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccc
Confidence            3446677899999998   99999999999998877   776 4456788889999999999999999999999999999


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------
Q psy18160        114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------  182 (373)
Q Consensus       114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------  182 (373)
                      +|++++|||+++++||+++..|.....+                     ...+++|+++||||+|+.+.           
T Consensus        81 a~~~ilv~d~t~~~Sf~~~~~~~~~~~~---------------------~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~  139 (185)
T d2atxa1          81 TDVFLICFSVVNPASFQNVKEEWVPELK---------------------EYAPNVPFLLIGTQIDLRDDPKTLARLNDMK  139 (185)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHH---------------------HHSTTCCEEEEEECTTSTTCHHHHHHHTTTT
T ss_pred             cceeeeccccchHHHHHHHHHHHHHHHH---------------------hcCCCCCeeEeeeccccccchhhhhhhhhcc
Confidence            9999999999999999988754444333                     13468999999999998652           


Q ss_pred             CcccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        183 RRCVEYSEGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       183 ~~~v~~~e~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      .+.++.+++.++++.++ ++|+||||++|.||+++|+.+++.+.
T Consensus       140 ~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         140 EKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence            36789999999999988 78999999999999999999998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.97  E-value=6.7e-31  Score=225.15  Aligned_cols=158  Identities=26%  Similarity=0.435  Sum_probs=140.4

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..|++++|+   |||||++||++++|...   |++.++ .+.+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            468999998   99999999999998776   888766 56788999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.||+.+..|+.++.+.                    ...+++|++|||||+|+.+. +.++.++++++++.+++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piiivgnK~Dl~~~-~~v~~~~~~~~~~~~~~  141 (168)
T d1u8za_          83 FSITEMESFAATADFREQILRV--------------------KEDENVPFLLVGNKSDLEDK-RQVSVEEAKNRADQWNV  141 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHH--------------------HCCTTSCEEEEEECGGGGGG-CCSCHHHHHHHHHHHTC
T ss_pred             eeccchhhhhhHHHHHHHHHHh--------------------hCCCCCcEEEEecccccccc-ccccHHHHHHHHHHcCC
Confidence            9999999999999999988762                    23468999999999999765 78999999999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      +|+|+||++|.||+++|++|++.+..
T Consensus       142 ~~~e~Sak~g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         142 NYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             eEEEEcCCCCcCHHHHHHHHHHHHHC
Confidence            99999999999999999999988753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.2e-31  Score=222.97  Aligned_cols=156  Identities=37%  Similarity=0.671  Sum_probs=143.1

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .|++++|+   |||||++||++++|...   +++.+........++..+.+.+||++|++++..++..+++++|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            37899998   99999999999998877   7777888788888999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++.||+.+.+|+..+..                     ...+++|++|||||+|+.+. +.+..+++.++++.++++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~---------------------~~~~~~~iilvgnK~Dl~~~-~~~~~~~~~~~~~~~~~~  138 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRT---------------------ERGSDVIIMLVGNKTDLADK-RQVSIEEGERKAKELNVM  138 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHH---------------------HHTTSSEEEEEEECTTCGGG-CCSCHHHHHHHHHHTTCE
T ss_pred             ccccccchhhhHhhHHHHHH---------------------hcCCCceEEEEecccchhhh-hhhhHHHHHHHHHHcCCE
Confidence            99999999999999988876                     34468999999999999765 678889999999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      |+||||++|.||+++|++|++.++
T Consensus       139 ~~e~SAk~g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         139 FIETSAKAGYNVKQLFRRVAAALP  162 (164)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHSC
T ss_pred             EEEecCCCCcCHHHHHHHHHHhhC
Confidence            999999999999999999999875

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-30  Score=222.08  Aligned_cols=156  Identities=41%  Similarity=0.701  Sum_probs=143.1

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|+   |||||++||++++|...   +.+.++..+.+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            368888887   99999999999998877   778888888999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||+++++||+.+..|+..+.+                     ......|+++||||+|+... +.+..++++++++.+++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~iilvgnK~Dl~~~-~~~~~~~~~~~~~~~~~  141 (166)
T d1z0fa1          84 YDITRRSTYNHLSSWLTDARN---------------------LTNPNTVIILIGNKADLEAQ-RDVTYEEAKQFAEENGL  141 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCGGG-CCSCHHHHHHHHHHTTC
T ss_pred             eccCchHHHHHHHHHHHHHHh---------------------hccccceEEEEcccccchhh-cccHHHHHHHHHHHcCC
Confidence            999999999999999988876                     45578899999999998765 67888899999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      +|++|||++|.||+++|+.|++.+
T Consensus       142 ~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         142 LFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999999998875

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-30  Score=225.65  Aligned_cols=158  Identities=19%  Similarity=0.262  Sum_probs=137.2

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|+   |||||++||+++.|...   |++. ...+...+++..+.+++||++|+++|..++..+++++|++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-ecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            489999998   99999999999998877   7774 4567778899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccCHH
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVEYS  189 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~~~  189 (373)
                      ||+++++||+++.+|......                     ...+++|+++||||+|+.+.           .+.++.+
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~---------------------~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~  140 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEIT---------------------HHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE  140 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHH---------------------HHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHH
T ss_pred             cccchHHHHHHHHHHHHHHHh---------------------hcCCCCceEEEeccccccccchhhhhhhhcccccccHH
Confidence            999999999999865544443                     23468999999999998532           2468899


Q ss_pred             HHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        190 EGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       190 e~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ++++++++++ ++|+||||++|.||+++|+.+++.+.+
T Consensus       141 ~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~~  178 (191)
T d2ngra_         141 TAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE  178 (191)
T ss_dssp             HHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHhc
Confidence            9999999964 799999999999999999999987763

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-30  Score=223.97  Aligned_cols=160  Identities=26%  Similarity=0.320  Sum_probs=140.8

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|+   |||||++||+++.|.+.   |++..+ .....+++..+.+.+||++|+++|..++..+++++|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            468999998   99999999999998766   787655 56778899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||+++++||+.+..|+..+.+..                   ....++|++|||||+|+... +.++.++++++++.+++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~~~piilVgnK~Dl~~~-~~v~~~e~~~~~~~~~~  140 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIK-------------------GDVESIPIMLVGNKCDESPS-REVQSSEAEALARTWKC  140 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHH-------------------C---CCCEEEEEECGGGGGG-CCSCHHHHHHHHHHHTC
T ss_pred             eecccccchhcccchhhhhhhhh-------------------ccCCCCcEEEEeeccccccc-ccccHHHHHHHHHHcCC
Confidence            99999999999999988876521                   23468899999999999765 77999999999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +|+||||++|.||+++|+.|++.+.++
T Consensus       141 ~~~e~Sak~~~~v~e~f~~l~~~~~~~  167 (171)
T d2erxa1         141 AFMETSAKLNHNVKELFQELLNLEKRR  167 (171)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred             eEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            999999999999999999999877543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-30  Score=222.03  Aligned_cols=158  Identities=29%  Similarity=0.390  Sum_probs=138.9

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|+   |||||++||+++.|.+.   |++.++. +.+..++..+.+++||++|++.+. .+..+++++|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            479999998   99999999999998776   8888874 556678999999999999998874 567789999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||+++++||+.+.+|+..+...                    ...+++|++|||||+|+.+. +.++.++++++++++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilvgnK~Dl~~~-r~V~~~e~~~~a~~~~~  138 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEI--------------------KKPKNVTLILVGNKADLDHS-RQVSTEEGEKLATELAC  138 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH--------------------HTTSCCCEEEEEECGGGGGG-CCSCHHHHHHHHHHHTS
T ss_pred             cccCCccchhhhhhhccccccc--------------------ccccCcceeeeccchhhhhh-ccCcHHHHHHHHHHhCC
Confidence            9999999999999887765541                    34468999999999999765 77999999999999999


Q ss_pred             eEEEEcCCCCC-CHHHHHHHHHHHcchh
Q psy18160        201 LFMETSAKTAM-NVNEIFVEIAKKLPKK  227 (373)
Q Consensus       201 ~~~evSak~~~-gI~~lf~~L~~~i~~~  227 (373)
                      +|+|+||++|. ||+++|..|++.+.++
T Consensus       139 ~~~e~Saktg~gnV~e~F~~l~~~i~~~  166 (168)
T d2atva1         139 AFYECSACTGEGNITEIFYELCREVRRR  166 (168)
T ss_dssp             EEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred             eEEEEccccCCcCHHHHHHHHHHHHHHh
Confidence            99999999998 6999999999988754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.7e-30  Score=220.04  Aligned_cols=157  Identities=64%  Similarity=1.024  Sum_probs=145.0

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .|++++|+   |||||++||++++|.+.   |.+.++....+..++..+.+.+||++|+++|..+++.+++++|++++||
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~   86 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVY   86 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEe
Confidence            58889997   99999999999998877   8888888888888999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++++|+.+..|...+.+                     ...+++|++|||||+|+.+. +.++.++++++++.++++
T Consensus        87 d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~iilvgnK~Dl~~~-~~v~~e~~~~~~~~~~~~  144 (170)
T d1r2qa_          87 DITNEESFARAKNWVKELQR---------------------QASPNIVIALSGNKADLANK-RAVDFQEAQSYADDNSLL  144 (170)
T ss_dssp             ETTCHHHHHHHHHHHHHHHH---------------------HSCTTCEEEEEEECGGGGGG-CCSCHHHHHHHHHHTTCE
T ss_pred             ccchhhHHHHHHHHhhhhhh---------------------ccCCCceEEeeccccccccc-ccccHHHHHHHHHhcCCE
Confidence            99999999999999888776                     45578999999999999775 789999999999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      |+|+||++|.||+++|+.|++++.+
T Consensus       145 ~~e~SAk~g~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         145 FMETSAKTSMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHTSCC
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999999998764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.5e-30  Score=221.02  Aligned_cols=157  Identities=25%  Similarity=0.365  Sum_probs=136.4

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..|++++|+   |||||++||+++.|.+.   |++ +...+...+++..+.+++||++|++.|..+++.+++++|++++|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            368999998   99999999999998877   666 45567788899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccCHH
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVEYS  189 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~~~  189 (373)
                      ||+++++||+++..|...+..                     ...+++|++|||||+|+.+.           .+.++.+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~---------------------~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~  139 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVK---------------------HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE  139 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHH---------------------HHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHH
T ss_pred             cccchhHHHHHHHHHHHHHHH---------------------HhCCCCceEEeeecccccchhhHHHHHHHhhcccccHH
Confidence            999999999998865544433                     23467999999999999653           2458889


Q ss_pred             HHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        190 EGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       190 e~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +++++++.++ .+|+||||++|.||+++|+.+++.+.
T Consensus       140 e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         140 EGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL  176 (177)
T ss_dssp             HHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence            9999999998 58999999999999999999998765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.6e-30  Score=220.28  Aligned_cols=159  Identities=27%  Similarity=0.421  Sum_probs=139.6

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|+   |||||++||++++|...   |.+ +...+.+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            379999998   99999999999998876   655 56678889999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.||+.+..|+..+.+.                    ......|++|||||+|+... +.++.+++.++++.+++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~p~ilvgnK~Dl~~~-~~v~~~~~~~~~~~~~~  142 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRV--------------------KDRDEFPMILIGNKADLDHQ-RQVTQEEGQQLARQLKV  142 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH--------------------HTSSCCSEEEEEECTTCTTS-CSSCHHHHHHHHHHTTC
T ss_pred             eccccccchhhHHHHhHHHHhh--------------------cccCCCCEEEEEeccchhhh-ccchHHHHHHHHHHcCC
Confidence            9999999999999999887652                    33467899999999999776 78999999999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +|+||||++|.||+++|..|++.+.+.
T Consensus       143 ~~~e~Sak~~~~i~e~f~~l~~~i~k~  169 (171)
T d2erya1         143 TYMEASAKIRMNVDQAFHELVRVIRKF  169 (171)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            999999999999999999999988643

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.2e-30  Score=219.17  Aligned_cols=158  Identities=49%  Similarity=0.796  Sum_probs=145.1

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|+   |||||++||++++|.+.   |+|.++..+.+..++..+.+.+||++|++++..+++.+++++|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            479999998   99999999999998877   889999899999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC--CcccCHHHHHHHHHHc
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS--RRCVEYSEGEAYAEEN  198 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~--~~~v~~~e~~~~~~~~  198 (373)
                      ||++++.||+.+..|+..+..                     ......|+++|+||+|+.+.  .+.++.++++++++.+
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~  141 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHE---------------------QASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEK  141 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHH---------------------HSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhcc---------------------ccccccceeeeecccccccccchhhhhHHHHHHHHHHc
Confidence            999999999999999887766                     35568899999999998543  3678999999999999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        199 GLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       199 ~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +++|+|+||++|.||+++|+.|++++.
T Consensus       142 ~~~~~e~Sak~g~gV~e~F~~i~~~i~  168 (170)
T d1ek0a_         142 GLLFFETSAKTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred             CCEEEEecCCCCcCHHHHHHHHHHHhc
Confidence            999999999999999999999998775

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.2e-30  Score=218.90  Aligned_cols=160  Identities=41%  Similarity=0.696  Sum_probs=144.1

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      +|++++|+   |||||++||++++|.+.   +.+.+........++..+.+.+||++|++.+..+++.+++++|++++||
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~   83 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   83 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEE
Confidence            68899998   99999999999998876   6666777788888999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++.||+.+.+|+..+.+                     ...+++|++|||||+|+... +.+..+++.++++.++++
T Consensus        84 d~~~~~sf~~~~~~~~~~~~---------------------~~~~~~piilv~nK~D~~~~-~~~~~~~~~~~a~~~~~~  141 (173)
T d2a5ja1          84 DITRRETFNHLTSWLEDARQ---------------------HSSSNMVIMLIGNKSDLESR-RDVKREEGEAFAREHGLI  141 (173)
T ss_dssp             ETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCGGG-CCSCHHHHHHHHHHHTCE
T ss_pred             eecChHHHHhHHHHHHHHHH---------------------hCCCCCeEEEEecCCchhhh-hhhHHHHHHHHHHHcCCE
Confidence            99999999999999988877                     45578999999999998765 678889999999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      |+|+||++|.||+++|.+|++.+.++.+
T Consensus       142 ~~e~Sa~tg~~V~e~f~~i~~~i~~~~~  169 (173)
T d2a5ja1         142 FMETSAKTACNVEEAFINTAKEIYRKIQ  169 (173)
T ss_dssp             EEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999876544

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4.7e-30  Score=220.72  Aligned_cols=160  Identities=33%  Similarity=0.597  Sum_probs=117.3

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..|++++|+   |||||+++|++++|...   |++.++..+.+.+++..+.+.+|||+|+++|..+++.+++++|++|+|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v   85 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV   85 (173)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEE
Confidence            357888887   99999999999998777   888899999999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.||+.+..|+..+..                     ....+.|+++|+||.|+... +....+++.++++..++
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~iilv~~k~D~~~~-~~~~~~~~~~~~~~~~~  143 (173)
T d2fu5c1          86 YDITNEKSFDNIRNWIRNIEE---------------------HASADVEKMILGNKCDVNDK-RQVSKERGEKLALDYGI  143 (173)
T ss_dssp             EETTCHHHHHHHHHHHHHHHH---------------------HSCTTCEEEEEEEC--CCSC-CCSCHHHHHHHHHHHTC
T ss_pred             EECCChhhHHHHHHHHHHhhh---------------------hccCCceEEEEEecccchhh-cccHHHHHHHHHHhcCC
Confidence            999999999999999888876                     45678999999999999776 66778889999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      +|++|||++|+||+++|++|++.+..+.
T Consensus       144 ~~~e~Sa~~g~gv~e~f~~l~~~i~~k~  171 (173)
T d2fu5c1         144 KFMETSAKANINVENAFFTLARDIKAKM  171 (173)
T ss_dssp             EEEECCC---CCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999887654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-29  Score=216.85  Aligned_cols=157  Identities=35%  Similarity=0.640  Sum_probs=135.0

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      .+|++++|+   |||||++||++++|...    +++.++....+..++..+.+++|||+|++++..++..+++++|++++
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~   85 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEE
Confidence            467888887   99999999999988654    67888888889999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||+++++||..+..|+..+..                     ......|+++|+||+|+... +.++.+++.++++.++
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~iilv~~k~d~~~~-~~v~~~~~~~~~~~~~  143 (170)
T d2g6ba1          86 LYDVTNKASFDNIQAWLTEIHE---------------------YAQHDVALMLLGNKVDSAHE-RVVKREDGEKLAKEYG  143 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECCSTTSC-CCSCHHHHHHHHHHHT
T ss_pred             EecCCcccchhhhhhhhhhhhh---------------------ccCCCceEEEEEeeechhhc-ccccHHHHHHHHHHcC
Confidence            9999999999999998887766                     34567899999999998776 7789999999999999


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++|+++||++|.||+++|++|++.+.
T Consensus       144 ~~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         144 LPFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            99999999999999999999998875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4e-30  Score=221.14  Aligned_cols=158  Identities=27%  Similarity=0.344  Sum_probs=138.2

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCC---CcccccccchhhccCCcE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTA---GQERYHTLAPMYYRNAQA  116 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~---G~e~~~~l~~~~~~~ad~  116 (373)
                      .+|++++|+   |||||++||++..+...    |.+.+++.+.+.+++..+.+.+||++   |+++|  ++..+++++|+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            578999998   99999999998776543    78888889999999999999999964   56666  56788999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160        117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE  196 (373)
Q Consensus       117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~  196 (373)
                      +|+|||++++.||+++..|+..+...                    ...+++|++|||||+|+.+. +.++.++++++++
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilvgnK~Dl~~~-~~v~~~~~~~~a~  139 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRA--------------------RQTEDIPIILVGNKSDLVRC-REVSVSEGRACAV  139 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTS--------------------GGGTTSCEEEEEECTTCGGG-CCSCHHHHHHHHH
T ss_pred             eeeeecccccchhhhhhhhhhhhhhc--------------------cccCCceEEEEecccccccc-ccccHHHHHHHHH
Confidence            99999999999999999999888662                    23468999999999999765 7899999999999


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      .++++|+|+||++|.||+++|+.|++++..+
T Consensus       140 ~~~~~~~e~Sak~g~~i~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         140 VFDCKFIETSAAVQHNVKELFEGIVRQVRLR  170 (172)
T ss_dssp             HHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HcCCeEEEEeCCCCcCHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999988654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.4e-31  Score=226.76  Aligned_cols=154  Identities=27%  Similarity=0.456  Sum_probs=134.6

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .|++++|+   |||||++||++++|...   |+|.++..+.+..++..+.+.+|||+|++++..+++.+++++|++++||
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   83 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMF   83 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhcc
Confidence            58999998   99999999999998877   8899998899999999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |+++++||+++.+|+..+.+.                      .+++|++|||||+|+... +  ..+++..+++.++++
T Consensus        84 d~~~~~Sf~~~~~~~~~~~~~----------------------~~~~piilvgnK~Dl~~~-~--~~~~~~~~~~~~~~~  138 (170)
T d1i2ma_          84 DVTSRVTYKNVPNWHRDLVRV----------------------CENIPIVLCGNKVDIKDR-K--VKAKSIVFHRKKNLQ  138 (170)
T ss_dssp             ETTSGGGGTTHHHHHHHHHHH----------------------HCSCCEEEEEECCCCSCS-C--CTTTSHHHHSSCSSE
T ss_pred             ccccccccchhHHHHHHHhhc----------------------cCCCceeeecchhhhhhh-h--hhhHHHHHHHHcCCE
Confidence            999999999999999887762                      257999999999999764 2  234566788889999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      |+|+||++|.||+++|++|++.+.+
T Consensus       139 ~~e~Sak~~~~v~e~f~~l~~~l~~  163 (170)
T d1i2ma_         139 YYDISAKSNYNFEKPFLWLARKLIG  163 (170)
T ss_dssp             EEEEBTTTTBTTTHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHcc
Confidence            9999999999999999999998864

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.8e-30  Score=219.21  Aligned_cols=157  Identities=32%  Similarity=0.475  Sum_probs=141.9

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|+   |||||++||++++|.+.   |++ +++.+.+.+++..+.+++||++|++.+..++..+++++|++++|
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            479999998   99999999999998877   666 55677888999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.||+++..|+..+...                    ...+++|++|||||+|+.+. +.+..++++.+++.+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilvgnK~Dl~~~-~~~~~~~~~~~~~~~~~  140 (167)
T d1kaoa_          82 YSLVNQQSFQDIKPMRDQIIRV--------------------KRYEKVPVILVGNKVDLESE-REVSSSEGRALAEEWGC  140 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHH--------------------TTTSCCCEEEEEECGGGGGG-CCSCHHHHHHHHHHHTS
T ss_pred             eeecchhhhhhhhchhhhhhhh--------------------ccCCCCCEEEEEEccchhhc-ccchHHHHHHHHHHcCC
Confidence            9999999999999999887662                    23468899999999999765 67888999999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +|+||||++|.||+++|+.|++++.
T Consensus       141 ~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         141 PFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcCHHHHHHHHHHHHc
Confidence            9999999999999999999998764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8e-30  Score=217.92  Aligned_cols=157  Identities=28%  Similarity=0.457  Sum_probs=140.6

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|+   |||||++||+.++|.+.   |++..+ .+.+.+++..+.+.+||++|++++..+++.+++++|++++|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            468999998   99999999999999876   777655 56778899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc-C
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN-G  199 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~-~  199 (373)
                      ||++++.||+++..|+..+.+.                    ...+++|++|||||+|+... +.+..+++..+++++ +
T Consensus        82 ~d~~~~~sf~~~~~~~~~~~~~--------------------~~~~~~p~ilvgnK~Dl~~~-~~~~~~~~~~~~~~~~~  140 (167)
T d1c1ya_          82 YSITAQSTFNDLQDLREQILRV--------------------KDTEDVPMILVGNKCDLEDE-RVVGKEQGQNLARQWCN  140 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH--------------------HCCSCCCEEEEEECTTCGGG-CCSCHHHHHHHHHHTTS
T ss_pred             eeccchhhhHhHHHHHHHHHHh--------------------cCCCCCeEEEEEEecCcccc-cccchhHHHHHHHHhCC
Confidence            9999999999999999888762                    34568999999999999776 678888999999884 6


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++|+|+||++|.||+++|++|++++.
T Consensus       141 ~~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         141 CAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             CEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence            89999999999999999999998774

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.4e-29  Score=220.42  Aligned_cols=159  Identities=34%  Similarity=0.641  Sum_probs=145.3

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|.   |||||+++|+++.|...   |.+.++..+.+.+++..+.+.+|||+|+++|..+++.++++||++|+|
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v   85 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV   85 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            367888887   99999999999988876   888888888999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++++|..+..|...+..                     ....++|++|||||+|+.+. +.+..+++..+++..++
T Consensus        86 ~d~t~~~s~~~~~~~~~~~~~---------------------~~~~~~~iilv~nK~D~~~~-~~~~~~~~~~~~~~~~~  143 (194)
T d2bcgy1          86 YDVTDQESFNGVKMWLQEIDR---------------------YATSTVLKLLVGNKCDLKDK-RVVEYDVAKEFADANKM  143 (194)
T ss_dssp             EETTCHHHHHHHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCTTT-CCSCHHHHHHHHHHTTC
T ss_pred             EeCcchhhhhhHhhhhhhhhh---------------------cccCCceEEEEEeccccccc-cchhHHHHhhhhhccCc
Confidence            999999999999998888776                     35578999999999999876 77889999999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +|+++||++|.||+++|+.|++.+.+.
T Consensus       144 ~~~e~SAk~g~gi~e~f~~l~~~i~~~  170 (194)
T d2bcgy1         144 PFLETSALDSTNVEDAFLTMARQIKES  170 (194)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ceEEEecCcCccHHHHHHHHHHHHHHH
Confidence            999999999999999999999988754

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-29  Score=217.63  Aligned_cols=161  Identities=35%  Similarity=0.612  Sum_probs=146.0

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|+   |||||++||+.++|.+.   |.+.+.....+..++..+.+.+|||+|++++..+++.+++++|++++|
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   84 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence            378999997   99999999999998876   777787778888899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++++|..+..|+..+..                     ...+++|++|||||+|+... +.+..+++.++++.+++
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~piivv~nK~D~~~~-~~~~~~~~~~~~~~~~~  142 (174)
T d2bmea1          85 YDITSRETYNALTNWLTDARM---------------------LASQNIVIILCGNKKDLDAD-REVTFLEASRFAQENEL  142 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECGGGGGG-CCSCHHHHHHHHHHTTC
T ss_pred             EecccchhHHHHhhhhccccc---------------------ccCCceEEEEEEecccccch-hchhhhHHHHHHHhCCC
Confidence            999999999999999988877                     34578999999999998665 67888889999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      +|+++||++|.||+++|++|++.+.++.+
T Consensus       143 ~~~e~Sak~~~gi~e~f~~l~~~i~~~~~  171 (174)
T d2bmea1         143 MFLETSALTGENVEEAFVQCARKILNKIE  171 (174)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCCcCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999876544

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.5e-30  Score=222.68  Aligned_cols=162  Identities=28%  Similarity=0.472  Sum_probs=143.2

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECC----------EEEEEEEEeCCCcccccccchhh
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDD----------VTIRFEIWDTAGQERYHTLAPMY  110 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~----------~~v~l~i~Dt~G~e~~~~l~~~~  110 (373)
                      .+|++++|+   |||||++||++++|...   |.+.++..+.+.+++          ..+.+.+|||+|+++|..+++.+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            478889997   99999999999998877   777787777777643          35789999999999999999999


Q ss_pred             ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160        111 YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE  190 (373)
Q Consensus       111 ~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e  190 (373)
                      ++++|++|+|||++++.+|+.+..|+..+...                    .....+|++|||||+|+... +.++.++
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~~iilv~nK~Dl~~~-~~v~~~e  143 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN--------------------AYCENPDIVLIGNKADLPDQ-REVNERQ  143 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCC--------------------CTTTCCEEEEEEECTTCGGG-CCSCHHH
T ss_pred             HhcCCEEEEEEeccccccceeeeeccchhhhh--------------------ccCCCceEEEEeeeccchhh-hcchHHH
Confidence            99999999999999999999999998776541                    23467899999999999765 7899999


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       191 ~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      +.+++++++++|+++||++|.||+++|++|++.+.++.+
T Consensus       144 ~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~~k~~  182 (186)
T d2f7sa1         144 ARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME  182 (186)
T ss_dssp             HHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999876654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.7e-29  Score=214.84  Aligned_cols=161  Identities=37%  Similarity=0.570  Sum_probs=143.7

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|+   |||||++||.++.|...   +.+.+...+.+.+++..+.+.+||++|+++|..++..+++.+|++|+|
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v   83 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   83 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence            368888887   99999999999998876   677777788889999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.||..+.+|+..+..                     ...+++|++|||||+|+.+. +....+.+..+++.++.
T Consensus        84 ~d~~~~~S~~~~~~~~~~i~~---------------------~~~~~~piilvgnK~Dl~~~-~~~~~~~~~~~~~~~~~  141 (175)
T d2f9la1          84 YDIAKHLTYENVERWLKELRD---------------------HADSNIVIMLVGNKSDLRHL-RAVPTDEARAFAEKNNL  141 (175)
T ss_dssp             EETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCGGG-CCSCHHHHHHHHHHTTC
T ss_pred             EECCCcccchhHHHHHHHHHH---------------------hcCCCCcEEEEEeeeccccc-ccchHHHHHHhhcccCc
Confidence            999999999999999998877                     45578999999999999765 56777778889999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      +|+++||++|.||+++|++|++.+.+...
T Consensus       142 ~~~e~Sa~~g~~i~e~f~~l~~~i~~~~~  170 (175)
T d2f9la1         142 SFIETSALDSTNVEEAFKNILTEIYRIVS  170 (175)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999998865433

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.1e-29  Score=212.59  Aligned_cols=158  Identities=39%  Similarity=0.651  Sum_probs=141.7

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|+   |||||+++|++++|...   |++.++..+.+.+++..+.+.+|||+|+++|..+++.+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            579999998   99999999999998876   999999999999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.||+.+..|+..+..                     ......|++++++|.|+..  +.+..+++.++++.+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~~i~~~~k~d~~~--~~~~~~~~~~~~~~~~~  138 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNE---------------------HANDEAQLLLVGNKSDMET--RVVTADQGEALAKELGI  138 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCTT--CCSCHHHHHHHHHHHTC
T ss_pred             EECCCccCHHHHHhhhhhhhc---------------------cccCcceeeeecchhhhhh--hhhhHHHHHHHHHhcCC
Confidence            999999999999988887776                     4556789999999999865  56888899999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +|++|||++|.||+++|++|++.+.++
T Consensus       139 ~~~~~Sa~~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         139 PFIESSAKNDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999888653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.6e-29  Score=212.40  Aligned_cols=155  Identities=26%  Similarity=0.448  Sum_probs=140.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      +|++++|+   |||||++||+++.|...   |++.++. ..+..++..+.+.+||++|++.+...+..+++.++++++||
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~   82 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   82 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeec-cceeeeceeeeeeeeeccCccccccchhhhhhcccccceee
Confidence            68999998   99999999999998876   7776664 55678899999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL  201 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~  201 (373)
                      |++++.+|+.+.+|+..+.+.                    ...+++|+++||||+|+..  +.++.++++++++.++++
T Consensus        83 d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~  140 (166)
T d1ctqa_          83 AINNTKSFEDIHQYREQIKRV--------------------KDSDDVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIP  140 (166)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHH--------------------HTCSSCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCC
T ss_pred             cccccccHHHHHHHHHHHHHh--------------------cCCCCCeEEEEeccccccc--ccccHHHHHHHHHHhCCe
Confidence            999999999999999998773                    3446799999999999865  568889999999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        202 FMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       202 ~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      |+++||++|+||+++|..|++.+.
T Consensus       141 ~~e~Sak~g~gi~e~f~~i~~~i~  164 (166)
T d1ctqa_         141 YIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999999998875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.3e-29  Score=215.37  Aligned_cols=166  Identities=31%  Similarity=0.518  Sum_probs=130.4

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEE-CCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCL-DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      +.+|++++|+   |||||+++|++++|.+.   |.+.+........ +...+.+.+|||+|++++..++..+++.+|+++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            3589999998   99999999999998876   6666555444444 445678999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN  198 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~  198 (373)
                      +|||++++.||+.+..|+.++.....                 .....++|++|||||+|+.+.++.++.++++++++.+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~-----------------~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~  143 (175)
T d1ky3a_          81 LVYDVTNASSFENIKSWRDEFLVHAN-----------------VNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSL  143 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHC-----------------CSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHT
T ss_pred             EEeecccccccchhhhcchhhhhhhh-----------------hcccccCcEEEEecccchhhhhcchhHHHHHHHHHHc
Confidence            99999999999999999998876211                 1234689999999999998765668889999999998


Q ss_pred             C-CeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        199 G-LLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       199 ~-~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      + ++|++|||++|.||+++|++|++.+.+++
T Consensus       144 ~~~~~~e~SA~~g~gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         144 GDIPLFLTSAKNAINVDTAFEEIARSALQQN  174 (175)
T ss_dssp             TSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCcCHHHHHHHHHHHHHhcc
Confidence            6 78999999999999999999999887653

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.6e-29  Score=214.40  Aligned_cols=157  Identities=25%  Similarity=0.456  Sum_probs=136.4

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..+|++++|+   |||||++||++++|...   |++ ++..+.+..++..+.+.+||++|++.|..++..+++++|++++
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence            4589999998   99999999999998877   776 4556778889999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHH-HHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccC
Q psy18160        120 VYDITNQDTFGRAKS-WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVE  187 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~  187 (373)
                      |||+++++||+++.. |+..+..                      ...++|++|||||+|+.+.           .+.+.
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~~----------------------~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~  140 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVRH----------------------HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPIT  140 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHH----------------------HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCC
T ss_pred             eeccchHHHHHHHHHHHHHHHHH----------------------hCCCCcEEEEeecccchhhhhhhhhhhhccccchh
Confidence            999999999999986 4444443                      3457899999999998543           13466


Q ss_pred             HHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        188 YSEGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       188 ~~e~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ..++..++++++ ++|+||||++|.||+++|+.|++.+.
T Consensus       141 ~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         141 YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHc
Confidence            778899999887 79999999999999999999999876

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.6e-28  Score=208.25  Aligned_cols=161  Identities=27%  Similarity=0.507  Sum_probs=142.8

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII  119 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil  119 (373)
                      ..+|++++|+   |||||++||++++|.+.   |++..+..+.+..++..+.+.+||++|+.++...+..++..+|++++
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   84 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL   84 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence            4568899998   99999999999998877   88888888899999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      +||++++.||+.+..|++++.+...                 .....++|++|||||+|+.+  +.++.+++++++++++
T Consensus        85 ~~d~~~~~s~~~~~~~~~~i~~~~~-----------------~~~~~~~piilVgnK~Dl~~--~~v~~~~~~~~~~~~~  145 (174)
T d1wmsa_          85 TFSVDDSQSFQNLSNWKKEFIYYAD-----------------VKEPESFPFVILGNKIDISE--RQVSTEEAQAWCRDNG  145 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHT-----------------CSCTTTSCEEEEEECTTCSS--CSSCHHHHHHHHHHTT
T ss_pred             EEeeecccccchhhhHHHHHHHHhc-----------------cccCCCceEEEeccccchhh--ccCcHHHHHHHHHHcC
Confidence            9999999999999999988866311                 13346799999999999965  6799999999999875


Q ss_pred             -CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        200 -LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       200 -~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                       ++|+||||++|.||+++|++|++.+.
T Consensus       146 ~~~~~e~Sak~~~gI~e~f~~l~~~il  172 (174)
T d1wmsa_         146 DYPYFETSAKDATNVAAAFEEAVRRVL  172 (174)
T ss_dssp             CCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCcCHHHHHHHHHHHHh
Confidence             89999999999999999999998875

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.4e-28  Score=212.84  Aligned_cols=158  Identities=24%  Similarity=0.352  Sum_probs=136.4

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|+   |||||++||++++|...   |++ +...+.+.+++..+.+++||++|++.+..+++.+++++|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            368999998   99999999999999876   666 45567788899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccCHH
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVEYS  189 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~~~  189 (373)
                      ||+++++||+.+..|......                     ...+++|++|||||+|+...           .+.++.+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~---------------------~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~  139 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQ---------------------EFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYD  139 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHH---------------------HHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHH
T ss_pred             eecccCCCHHHHHHHHHHHHh---------------------ccCCcceEEEEEecccccccchhhHHHhhhhcCcchHH
Confidence            999999999999876544433                     23468999999999998542           3568999


Q ss_pred             HHHHHHHHcC-CeEEEEcCCCCCC-HHHHHHHHHHHcch
Q psy18160        190 EGEAYAEENG-LLFMETSAKTAMN-VNEIFVEIAKKLPK  226 (373)
Q Consensus       190 e~~~~~~~~~-~~~~evSak~~~g-I~~lf~~L~~~i~~  226 (373)
                      ++.+++++++ .+|+||||++|.| |+++|+.+++.+.+
T Consensus       140 e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         140 QGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             HHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHHHhc
Confidence            9999999987 5899999999985 99999999988764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.4e-28  Score=208.50  Aligned_cols=159  Identities=35%  Similarity=0.597  Sum_probs=144.2

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|.   |||||++||.+++|...   +.+.++..+.+.+++..+.+.+|||+|++++..+++.+++++|++++|
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v   86 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILV   86 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            478999998   99999999999998777   777777788889999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL  200 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~  200 (373)
                      ||++++.+|+.+..|+.++.+.                    ......|+++++||.|...  +.+..++++++++.+++
T Consensus        87 ~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~~i~~~~nk~d~~~--~~v~~~~~~~~~~~~~~  144 (177)
T d1x3sa1          87 YDVTRRDTFVKLDNWLNELETY--------------------CTRNDIVNMLVGNKIDKEN--REVDRNEGLKFARKHSM  144 (177)
T ss_dssp             EETTCHHHHHTHHHHHHHHTTC--------------------CSCSCCEEEEEEECTTSSS--CCSCHHHHHHHHHHTTC
T ss_pred             EECCCccccccchhhhhhhccc--------------------ccccceeeEEEeecccccc--ccccHHHHHHHHHHCCC
Confidence            9999999999999999888662                    2345789999999999765  67899999999999999


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        201 LFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       201 ~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      +|+++||++|+||+++|++|++.+.+.
T Consensus       145 ~~~e~Sa~tg~gv~e~f~~l~~~l~~~  171 (177)
T d1x3sa1         145 LFIEASAKTCDGVQCAFEELVEKIIQT  171 (177)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHccC
Confidence            999999999999999999999988753

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.5e-28  Score=207.83  Aligned_cols=154  Identities=31%  Similarity=0.530  Sum_probs=136.8

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc-cchhhccCCcEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT-LAPMYYRNAQAAII  119 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~-l~~~~~~~ad~iil  119 (373)
                      .+|++++|+   |||||++||++++|...   |.+..+..+...+.+....+.+||++|.+.+.. .++.+++++|++++
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            468999998   99999999999998877   888888888899999999999999999877654 56789999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160        120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG  199 (373)
Q Consensus       120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~  199 (373)
                      |||+++++||+.+.+|+.++.+.                    ...+++|++|||||+|+.+. +.++.++++++++.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~pi~lvgnK~Dl~~~-~~v~~~~~~~~~~~~~  140 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQH--------------------LLANDIPRILVGNKCDLRSA-IQVPTDLAQKFADTHS  140 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--------------------CCCSCCCEEEEEECTTCGGG-CCSCHHHHHHHHHHTT
T ss_pred             EEEeehhhhhhhhhhhhHHHHhh--------------------ccCCCCeEEEEeccccchhc-cchhHHHHHHHHHHCC
Confidence            99999999999999999988763                    23468999999999999775 6799999999999999


Q ss_pred             CeEEEEcCCC---CCCHHHHHHHHH
Q psy18160        200 LLFMETSAKT---AMNVNEIFVEIA  221 (373)
Q Consensus       200 ~~~~evSak~---~~gI~~lf~~L~  221 (373)
                      ++|+|+|||+   +.||+++|++|+
T Consensus       141 ~~~~e~SAkt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         141 MPLFETSAKNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             CCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred             CEEEEEecccCCcCcCHHHHHHHhC
Confidence            9999999997   559999999874

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-27  Score=205.99  Aligned_cols=158  Identities=19%  Similarity=0.252  Sum_probs=133.4

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .++++++|+   |||||+++|++++|.+.  |.+.. +.+.+.+++..+.+.+|||+|++++     .|++.+|++|+||
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~-~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilVf   78 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVF   78 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEE-EEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCcCCcccee-EEEEeecCceEEEEEEeeccccccc-----ccccccceeEEEe
Confidence            589999998   99999999999999877  55544 4688899999999999999998764     4789999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-CcccCHHHHHHHHHH-cC
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-RRCVEYSEGEAYAEE-NG  199 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-~~~v~~~e~~~~~~~-~~  199 (373)
                      |+++++||+.+..|+.++....                  ....+.+|++|||||.|+... .+.++.+++++++.. ++
T Consensus        79 d~~~~~Sf~~~~~~~~~i~~~~------------------~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~  140 (175)
T d2bmja1          79 SLEDENSFQAVSRLHGQLSSLR------------------GEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKR  140 (175)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHC------------------C--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTT
T ss_pred             ecccchhhhhhHHHHHHHHHHh------------------hcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCC
Confidence            9999999999999998886631                  134568899999999998543 366888899988655 56


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      ++|+||||++|.||+++|..|++.+...+
T Consensus       141 ~~~~e~SAk~~~~v~~~F~~l~~~i~~~~  169 (175)
T d2bmja1         141 CSYYETCATYGLNVDRVFQEVAQKVVTLR  169 (175)
T ss_dssp             EEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             CeEEEeCCCCCcCHHHHHHHHHHHHHHhh
Confidence            89999999999999999999999887543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=4e-27  Score=204.16  Aligned_cols=164  Identities=35%  Similarity=0.560  Sum_probs=142.7

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .+|++++|.   |||||+++|++++|...   |++.++..+.+...+..+.+.+||++|++++..++..++..+|++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            368899997   99999999999998877   889999889999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH-cC
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-NG  199 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~-~~  199 (373)
                      ||++++.+|+.+.+|+..+.....                 .....++|++|||||+|+.+  +.+..++..+++.. .+
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~-----------------~~~~~~ip~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~  142 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQAS-----------------PRDPENFPFVVLGNKIDLEN--RQVATKRAQAWCYSKNN  142 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHC-----------------CSSGGGSCEEEEEECTTSSC--CCSCHHHHHHHHHHTTS
T ss_pred             ecccchhhhhcchhhHHHHHHHhc-----------------cccccCCCEEEEEEeecccc--cchhHHHHHHHHHHhcC
Confidence            999999999999999988866211                 12335789999999999866  55777788887755 57


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEV  229 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~~  229 (373)
                      ++|++|||++|.||+++|++|++.+.+++.
T Consensus       143 ~~~~e~Sak~~~gI~e~f~~l~~~i~~~~~  172 (184)
T d1vg8a_         143 IPYFETSAKEAINVEQAFQTIARNALKQET  172 (184)
T ss_dssp             CCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCcCHHHHHHHHHHHHHhccc
Confidence            899999999999999999999998876543

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.93  E-value=1.4e-25  Score=192.49  Aligned_cols=154  Identities=18%  Similarity=0.188  Sum_probs=123.3

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      +...++++++|.   |||||+++|.+++|...  +.|  +..+.+..++  +.+.+||++|++++...+..+++.+|+++
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~--~~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   88 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeee--eeEEEeccCC--eeEeEeeccccccchhHHHHHhhccceeE
Confidence            345689999998   99999999999999776  444  3345565554  67899999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH-----
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA-----  193 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~-----  193 (373)
                      +|||++++.+|.++..|+..+...                    ....++|++||+||+|+.+.   ....+..+     
T Consensus        89 ~v~d~~d~~s~~~~~~~~~~~~~~--------------------~~~~~~pillv~nK~Dl~~~---~~~~~~~~~~~~~  145 (176)
T d1fzqa_          89 YVIDSADRKRFEETGQELTELLEE--------------------EKLSCVPVLIFANKQDLLTA---APASEIAEGLNLH  145 (176)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTC--------------------GGGTTCCEEEEEECTTSTTC---CCHHHHHHHTTGG
T ss_pred             Eeeccccccchhhhhhhhhhhhhh--------------------hccCCCeEEEEEEecccccc---ccHHHHHHHHHHH
Confidence            999999999999998887766541                    23457899999999999764   22222222     


Q ss_pred             HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       194 ~~~~~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      +++..+++++++||++|+||+++|++|++.+
T Consensus       146 ~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         146 TIRDRVWQIQSCSALTGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             GCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             HHHhcCCEEEEEeCCCCCCHHHHHHHHHhcC
Confidence            2233456899999999999999999998754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.92  E-value=2e-25  Score=192.83  Aligned_cols=157  Identities=15%  Similarity=0.178  Sum_probs=122.2

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI  118 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii  118 (373)
                      ....++++++|.   |||||++||.++.+...  |.+....  .+..++  +.+.+||++|++.+..+++.+++++|+++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   89 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   89 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEE--EEeeCC--EEEEEEecccccccchhHHhhhccceeEE
Confidence            445689999997   99999999999888766  6665543  334444  77899999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH-----
Q psy18160        119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA-----  193 (373)
Q Consensus       119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~-----  193 (373)
                      +|||++++.++..+.+|+..+...                    ....++|++|||||+|+.+.   ++.++..+     
T Consensus        90 ~v~d~~d~~s~~~~~~~l~~~~~~--------------------~~~~~~piliv~NK~Dl~~~---~~~~~i~~~~~~~  146 (182)
T d1moza_          90 FVVDSTDKDRMSTASKELHLMLQE--------------------EELQDAALLVFANKQDQPGA---LSASEVSKELNLV  146 (182)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTS--------------------STTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTT
T ss_pred             EEeeecccccchhHHHHHHHHHHh--------------------hccCCcceEEEEEeeccccc---cCHHHHHHHHHHH
Confidence            999999999999998887665441                    34467999999999999654   33444332     


Q ss_pred             HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       194 ~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      .+...++++++|||++|+||+++|++|++.+.++
T Consensus       147 ~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         147 ELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             TCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             HHhhCCCEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            2233456899999999999999999999988754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.92  E-value=2.4e-25  Score=189.20  Aligned_cols=151  Identities=17%  Similarity=0.253  Sum_probs=123.3

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      .++++++|.   |||||+++|.++++.+.   |+|.++  ..+..++  +.+.+||++|++.+...+..+++++|++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeee--eeeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            479999998   99999999999998876   777655  3455554  6799999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH-----HH
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA-----YA  195 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~-----~~  195 (373)
                      ||++++.+|+.+..|+..+...                    ...+++|++|||||.|+.+.   ....+..+     ++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~pi~lv~nK~Dl~~~---~~~~~i~~~~~~~~~  134 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDK--------------------PQLQGIPVLVLGNKRDLPGA---LDEKELIEKMNLSAI  134 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTC--------------------GGGTTCCEEEEEECTTSTTC---CCHHHHHHHTTGGGC
T ss_pred             cccccccccchhhhhhhhhhhh--------------------hcccCCcEEEEEeccccchh---hhHHHHHHHHHHHHH
Confidence            9999999999999888777551                    23468999999999998754   22232222     22


Q ss_pred             HHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        196 EENGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       196 ~~~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      +..+++++++||++|+||+++|++|++.+
T Consensus       135 ~~~~~~~~e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         135 QDREICCYSISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             CSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             HhCCCEEEEEeCcCCcCHHHHHHHHHHcc
Confidence            33456899999999999999999998764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.92  E-value=8.3e-25  Score=185.74  Aligned_cols=153  Identities=13%  Similarity=0.135  Sum_probs=121.5

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .++++++|.   |||||+++|.+..+...  |+|...  ..+..++  +.+.+||++|++.++..+..+++.++++++||
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   77 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI--KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   77 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEE--EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeee--eeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceeee
Confidence            478999998   99999999999887665  666443  3455544  77899999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH-----H
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA-----E  196 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~-----~  196 (373)
                      |+++..++..+..++......                    ....++|++||+||+|+.+.   ...++.....     +
T Consensus        78 d~~d~~~~~~~~~~~~~~~~~--------------------~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~  134 (165)
T d1ksha_          78 DSADRQRMQDCQRELQSLLVE--------------------ERLAGATLLIFANKQDLPGA---LSCNAIQEALELDSIR  134 (165)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTC--------------------GGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCC
T ss_pred             ecccchhHHHHHHhhhhhhhh--------------------cccCCCceEEEEeccccccc---cCHHHHHHHHHhhhhh
Confidence            999999999988766554431                    23467999999999999764   3333333321     2


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ..++++++|||++|+||+++|++|++.+..
T Consensus       135 ~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         135 SHHWRIQGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             SSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence            234679999999999999999999988764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.91  E-value=7.8e-25  Score=187.63  Aligned_cols=152  Identities=18%  Similarity=0.239  Sum_probs=121.2

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..++++++|.   |||||++||+++.+...  |.+..+  ......  .+.+.+||++|++.++..+..+++.+|++++|
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v   86 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV--ETVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   86 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEE--EEEEET--TEEEEEEEESCCGGGHHHHGGGTTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeE--EEeecc--ceeeEEecCCCcchhhhHHHhhhcccceEEEE
Confidence            3589999997   99999999999888766  665544  333333  47789999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH-----HHH
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE-----AYA  195 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~-----~~~  195 (373)
                      ||+++..++..+.+|+......                    ....+.|++||+||+|+.+.   ....+..     +.+
T Consensus        87 ~D~s~~~~~~~~~~~l~~~~~~--------------------~~~~~~piiiv~NK~Dl~~~---~~~~~i~~~~~~~~~  143 (173)
T d1e0sa_          87 VDCADRDRIDEARQELHRIIND--------------------REMRDAIILIFANKQDLPDA---MKPHEIQEKLGLTRI  143 (173)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTS--------------------GGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGC
T ss_pred             EecccchhHHHHHHHHHHHhhh--------------------cccccceeeeeeeccccccc---ccHHHHHHHHHHHHH
Confidence            9999999999998887766541                    23467999999999999764   2222222     223


Q ss_pred             HHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        196 EENGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       196 ~~~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      +..++.++++||++|+||+++|++|.+.+
T Consensus       144 ~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         144 RDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             CSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence            33456799999999999999999998765

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.88  E-value=2.5e-23  Score=174.47  Aligned_cols=155  Identities=17%  Similarity=0.221  Sum_probs=120.8

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCcceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECC
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDIT  124 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~  124 (373)
                      +|++++|.   |||||++||+++++...+.....  .....+...+.+.+||++|.+.+...+..+++.+++++++||++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~   78 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF--NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN   78 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC--CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee--EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEec
Confidence            58999998   99999999999998776111111  12233456688999999999999999999999999999999999


Q ss_pred             CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC--cccCHHHHHHHHHHcCCeE
Q psy18160        125 NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR--RCVEYSEGEAYAEENGLLF  202 (373)
Q Consensus       125 ~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~--~~v~~~e~~~~~~~~~~~~  202 (373)
                      ++.++..+..|+.++...                    .....+|+++++||.|+.+..  +++..+....+++..++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~--------------------~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~  138 (160)
T d1r8sa_          79 DRERVNEAREELMRMLAE--------------------DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI  138 (160)
T ss_dssp             CGGGHHHHHHHHHHHHTC--------------------GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE
T ss_pred             ChHHHHHHHHHHHHHHHh--------------------hcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEE
Confidence            999999998887776551                    234678999999999987641  1122222223445557789


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHc
Q psy18160        203 METSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       203 ~evSak~~~gI~~lf~~L~~~i  224 (373)
                      +++||++|+||+++|++|++++
T Consensus       139 ~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         139 QATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHC
T ss_pred             EEeECCCCCCHHHHHHHHHhcC
Confidence            9999999999999999998864

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=6.7e-22  Score=171.24  Aligned_cols=165  Identities=15%  Similarity=0.127  Sum_probs=113.6

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCcceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI  123 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~  123 (373)
                      .+|+++||+   |||||++||..+++...  |..  ...+..  ..+.+++|||+|+++|..++..|+++++++++|||+
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~--~~~--~~~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~   75 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGT--GIV--ETHFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL   75 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCC--SEE--EEEEEE--TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCc--cEE--EEEEEe--eeeeeeeeccccccccccchhhcccCCceeeeEEee
Confidence            479999998   99999999998877643  321  223333  457799999999999999999999999999999999


Q ss_pred             CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC--------------CcccCHH
Q psy18160        124 TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS--------------RRCVEYS  189 (373)
Q Consensus       124 ~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~--------------~~~v~~~  189 (373)
                      ++..+|..+..|...+.+          ....|...+........|+++++||.|+...              .......
T Consensus        76 ~~~~~~~~~~~~~~~~~e----------~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~  145 (195)
T d1svsa1          76 SDYDLVLAEDEEMNRMHE----------SMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYE  145 (195)
T ss_dssp             GGGGCBCSSCTTSBHHHH----------HHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHH
T ss_pred             cccchHHHHhhhhHHHHH----------HHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHH
Confidence            998877543322111111          0112333333356678999999999996211              0112222


Q ss_pred             HHHH-----HHHH------cCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        190 EGEA-----YAEE------NGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       190 e~~~-----~~~~------~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      ++..     +...      ..+.+++|||+++.||+++|+.+.+.+.++
T Consensus       146 ~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         146 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence            2222     1111      134578999999999999999998877643

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.83  E-value=4.2e-20  Score=157.61  Aligned_cols=152  Identities=14%  Similarity=0.179  Sum_probs=115.0

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      ..++++++|.   |||||++|+.++++.+.  +.+...  ......+  +.+.+||+++++.+...+..++..+++++++
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v   89 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   89 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeE--EEEeecc--eEEEEeccccccccccchhhhhccceeeeee
Confidence            3479999997   99999999999998876  444332  3334443  6789999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH-----
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA-----  195 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~-----  195 (373)
                      +|.++..++.....+.......                    ....+.|++||+||+|+...   ...++..+..     
T Consensus        90 ~d~~d~~~~~~~~~~~~~~~~~--------------------~~~~~~p~iiv~nK~Dl~~~---~~~~~i~~~~~~~~~  146 (177)
T d1zj6a1          90 VDSTDRERISVTREELYKMLAH--------------------EDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSI  146 (177)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTS--------------------GGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGC
T ss_pred             cccccccchhhhhhhhhhhhhc--------------------ccccceEEEEEEEccccccc---CcHHHHHHHHHHHhh
Confidence            9999999998887665554431                    23468999999999999764   2233333222     


Q ss_pred             HHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        196 EENGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       196 ~~~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      ...+++++++||++|+||+++|++|++++
T Consensus       147 ~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         147 KDHQWHIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             CSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            33456899999999999999999999876

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.83  E-value=5.7e-20  Score=154.72  Aligned_cols=157  Identities=18%  Similarity=0.229  Sum_probs=121.3

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~  121 (373)
                      .++++++|+   |||||+++|++++|...  |.+...  .....++  +.+.+||.++.+.+......++..++++++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV   80 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcceecccceee--eeeccCc--eEEEEeeccccccccccchhhhhhhhhhhhhh
Confidence            379999998   99999999999999876  544332  3334444  67889999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc--ccCHHHHHHHHHHcC
Q psy18160        122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR--CVEYSEGEAYAEENG  199 (373)
Q Consensus       122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~--~v~~~e~~~~~~~~~  199 (373)
                      |+.+..++.....++......                    ......|+++|+||.|+.....  .+..+.+..++...+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~  140 (169)
T d1upta_          81 DSCDRDRIGISKSELVAMLEE--------------------EELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRK  140 (169)
T ss_dssp             ETTCCTTHHHHHHHHHHHHTC--------------------GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSC
T ss_pred             hhhhcchhhhccchhhhhhhh--------------------hccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCC
Confidence            999999888887665544431                    3346789999999999976421  111222223445556


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        200 LLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       200 ~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                      ++|+++||++|+||+++|++|++.+.++
T Consensus       141 ~~~~~~SA~~g~gv~e~~~~l~~~l~~k  168 (169)
T d1upta_         141 WQIFKTSATKGTGLDEAMEWLVETLKSR  168 (169)
T ss_dssp             EEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            7899999999999999999999988643

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=2.6e-21  Score=168.16  Aligned_cols=156  Identities=11%  Similarity=0.030  Sum_probs=118.6

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD  122 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D  122 (373)
                      .+|+++||+   |||||++||..+.|... |+|.++.  .+.  ...+.+++||++|++++...+..+++.+++++++||
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~   77 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGSGVPTTGIIEY--PFD--LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVA   77 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSSCCCCCSCEEE--EEE--CSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCceeeEEEE--EEe--ccceeeeeccccccccccccccccccccceeeEeee
Confidence            479999998   99999999999998766 9998764  333  345779999999999999999999999999999999


Q ss_pred             CCCHh-----------hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC--------
Q psy18160        123 ITNQD-----------TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR--------  183 (373)
Q Consensus       123 ~~~~~-----------Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~--------  183 (373)
                      .++..           .++....|...+..                     ....+.|+++++||.|+....        
T Consensus        78 ~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~---------------------~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~  136 (200)
T d2bcjq2          78 LSEYDQVLVESDNENRMEESKALFRTIITY---------------------PWFQNSSVILFLNKKDLLEEKIMYSHLVD  136 (200)
T ss_dssp             GGGGGCBCSSCTTSBHHHHHHHHHHHHHHC---------------------GGGSSSEEEEEEECHHHHHHHTTTSCHHH
T ss_pred             ccchhhhhhhhccccchHHHHHHHHHHHhh---------------------hhccCccEEEecchhhhhhhcccchHHHH
Confidence            98764           34455556665544                     455789999999999974220        


Q ss_pred             -------cccCHHHHHHHHHH----------cCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        184 -------RCVEYSEGEAYAEE----------NGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       184 -------~~v~~~e~~~~~~~----------~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                             ...+.+.+..+...          ..+.++++||++|.||+++|+.|.+.+.++
T Consensus       137 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         137 YFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence                   11223333333211          124578999999999999999998888754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=5e-19  Score=147.88  Aligned_cols=147  Identities=15%  Similarity=0.234  Sum_probs=114.7

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI  123 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~  123 (373)
                      |++++|.   |||||+|++.++++...  |++...  ..+..+  .+.+.+||+.+...+....+.+++.++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS--EELAIG--NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEE--EEECCT--TCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeE--EEeccC--CeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            7889998   99999999999998766  555443  233333  35678999999999999999999999999999999


Q ss_pred             CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH--------
Q psy18160        124 TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA--------  195 (373)
Q Consensus       124 ~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~--------  195 (373)
                      ++..++.....|...+...                    ....+.|+++++||.|+...   +...+..+..        
T Consensus        78 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~i~i~~~k~d~~~~---~~~~~i~~~~~~~~~~~~  134 (166)
T d2qtvb1          78 ADPERFDEARVELDALFNI--------------------AELKDVPFVILGNKIDAPNA---VSEAELRSALGLLNTTGS  134 (166)
T ss_dssp             TCGGGHHHHHHHHHHHHTC--------------------TTTTTCCEEEEEECTTSSSC---CCHHHHHHHHTCSSCCC-
T ss_pred             cchhhhhhhhHHHHhhhhh--------------------hccCCceEEEEecccccccc---CCHHHHHHHhhhhhhhHH
Confidence            9999998888776666542                    34467899999999998654   3333332221        


Q ss_pred             ----HHcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160        196 ----EENGLLFMETSAKTAMNVNEIFVEIAK  222 (373)
Q Consensus       196 ----~~~~~~~~evSak~~~gI~~lf~~L~~  222 (373)
                          ...++++++|||++|+||+|+|++|++
T Consensus       135 ~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         135 QRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             --CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             HhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence                122346999999999999999999864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=2.8e-19  Score=153.20  Aligned_cols=149  Identities=16%  Similarity=0.071  Sum_probs=101.6

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc--cee--eeEEEEEEEECCEEEEEEEEeCCCcccccccc--------hhhcc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFS--AAFITQTVCLDDVTIRFEIWDTAGQERYHTLA--------PMYYR  112 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig--~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~--------~~~~~  112 (373)
                      -.|+++|.   |||||+|+|++.+....  ..+  .+.........+  ..+.+|||+|........        ..+++
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccccc
Confidence            36788886   99999999998865443  111  122223344444  457899999985543332        34478


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH
Q psy18160        113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE  192 (373)
Q Consensus       113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~  192 (373)
                      +||++++|+|++++.+..+ ..|+..++.                      ...+.|+++|+||+|+...    ..+...
T Consensus        84 ~ad~il~v~D~~~~~~~~~-~~i~~~l~~----------------------~~~~~piilv~NK~Dl~~~----~~~~~~  136 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPED-ELVARALKP----------------------LVGKVPILLVGNKLDAAKY----PEEAMK  136 (178)
T ss_dssp             SCSEEEEEEETTSCCCHHH-HHHHHHHGG----------------------GTTTSCEEEEEECGGGCSS----HHHHHH
T ss_pred             cccceeeeechhhhhcccc-cchhhheec----------------------cccchhhhhhhcccccccC----HHHHHH
Confidence            9999999999988655432 234444433                      2346899999999998653    122233


Q ss_pred             HHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        193 AYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       193 ~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      .+.+.++ ..++++||++|.||+++++.|++.+.
T Consensus       137 ~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         137 AYHELLPEAEPRMLSALDERQVAELKADLLALMP  170 (178)
T ss_dssp             HHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHhhcccCceEEEecCCCCCHHHHHHHHHHhCC
Confidence            4444444 57899999999999999999998775

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.77  E-value=2.3e-18  Score=146.99  Aligned_cols=152  Identities=13%  Similarity=0.136  Sum_probs=110.4

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV  120 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv  120 (373)
                      +..|++++|.   |||||+++|.++.+...  +.+...  ..+.+++.  .+.+||+.++..+...+..+++..++++++
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAGM--TFTTFDLGGHIQARRVWKNYLPAINGIVFL   87 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETTE--EEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccce--eEEEeccc--ccccccccchhhhhhHHhhhhcccceeeee
Confidence            4579999996   99999999999988766  444443  34566654  577999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH---
Q psy18160        121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE---  197 (373)
Q Consensus       121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~---  197 (373)
                      +|+++...+.....++......                    ....+.|++|++||.|+...   +...+..+....   
T Consensus        88 ~d~~d~~~~~~~~~~~~~~~~~--------------------~~~~~~~~li~~~K~D~~~~---~~~~~i~~~~~~~~~  144 (186)
T d1f6ba_          88 VDCADHERLLESKEELDSLMTD--------------------ETIANVPILILGNKIDRPEA---ISEERLREMFGLYGQ  144 (186)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTC--------------------GGGTTSCEEEEEECTTSTTC---CCHHHHHHHHTCTTT
T ss_pred             eeccCccchHHHHHHHHHhhcc--------------------cccCCCceEEEEeccCcccc---CCHHHHHHHHhhccc
Confidence            9999999988877655444331                    23467999999999998654   444444443321   


Q ss_pred             --------------cCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        198 --------------NGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       198 --------------~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                                    .++++++|||++|+||+|+|++|++.+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         145 TTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             chhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence                          134699999999999999999998765

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=5.1e-18  Score=147.34  Aligned_cols=157  Identities=12%  Similarity=0.087  Sum_probs=104.4

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCcceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI  123 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~  123 (373)
                      .+|++++|.   |||||++||...+....|+|...  ..+.+.  .+.+++||++|++.+...+..+++++++++++||.
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f~~~~~pTiG~~~--~~~~~~--~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~   77 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRIIHGQDPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSS   77 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHSCCCCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEET
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCeeeeEE--EEEeee--eeeeeeecccceeeecccccccccccceeEEEEEc
Confidence            479999998   99999999943222222888654  344454  46789999999999999999999999999999999


Q ss_pred             CCHhh----------HHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC----------
Q psy18160        124 TNQDT----------FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR----------  183 (373)
Q Consensus       124 ~~~~S----------f~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~----------  183 (373)
                      ++..+          ++....|+..+..                    .....++|++|+|||+|+.+..          
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------------------~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f  137 (200)
T d1zcba2          78 SEFDQVLMEDRQTNRLTESLNIFETIVN--------------------NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYF  137 (200)
T ss_dssp             TCTTCEETTEEEEEHHHHHHHHHHHHHT--------------------CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTC
T ss_pred             CCcceeeeecccchhhhHHHHHHHHHhh--------------------ChhhcCceEEEEeccchhhhhhccccHHHHhC
Confidence            98544          3333444444332                    1345689999999999974210          


Q ss_pred             -----cccCHHHHHHHHHH-----------cCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        184 -----RCVEYSEGEAYAEE-----------NGLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       184 -----~~v~~~e~~~~~~~-----------~~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                           .....+.+.++...           ..+.++++||+++.||+++|+.+.+.+.++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         138 LEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             TTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence                 11223344443322           124567899999999999999988877654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=8.6e-19  Score=147.20  Aligned_cols=145  Identities=19%  Similarity=0.248  Sum_probs=105.1

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc--ceee--eEEEEEEEECCEEEEEEEEeCCCcccccc--------cchhhcc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSA--AFITQTVCLDDVTIRFEIWDTAGQERYHT--------LAPMYYR  112 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~--------l~~~~~~  112 (373)
                      ++++++|.   |||||+|+|++.+....  +.+.  +.....+...+  ..+.+||++|..+...        ....+++
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            68899997   99999999998876533  2222  22233455555  4577999999754432        2334578


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH
Q psy18160        113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE  192 (373)
Q Consensus       113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~  192 (373)
                      .+|++++++|..+..+++....|...+..                      ...+.|+++|+||+|+.+.....      
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~----------------------~~~~~~iilv~NK~Dl~~~~~~~------  131 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIAR----------------------LPAKLPITVVRNKADITGETLGM------  131 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHH----------------------SCTTCCEEEEEECHHHHCCCCEE------
T ss_pred             hccccceeeccccccchhhhhhhhhhhhh----------------------cccccceeeccchhhhhhhHHHH------
Confidence            99999999999998887777766555554                      23578999999999986542111      


Q ss_pred             HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        193 AYAEENGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       193 ~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                        .+..+.+++++||++|.||++++++|++.+
T Consensus       132 --~~~~~~~~~~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         132 --SEVNGHALIRLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             --EEETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred             --HHhCCCcEEEEECCCCCCHHHHHHHHHhhC
Confidence              112356899999999999999999998764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=2.1e-17  Score=141.54  Aligned_cols=148  Identities=15%  Similarity=0.034  Sum_probs=98.9

Q ss_pred             EEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccc----cccc---hhhccCC
Q psy18160         50 QIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERY----HTLA---PMYYRNA  114 (373)
Q Consensus        50 ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~----~~l~---~~~~~~a  114 (373)
                      ++++|.   |||||+|+|++......     |....+  . .........+.+|||+|..+.    ..+.   ...+..+
T Consensus         4 VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~--~-~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNL--G-VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART   80 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEE--E-EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeee--c-eeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhh
Confidence            778887   99999999998765443     222222  1 222233345789999995322    1122   2346789


Q ss_pred             cEEEEEEECCCHh--hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH
Q psy18160        115 QAAIIVYDITNQD--TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE  192 (373)
Q Consensus       115 d~iilv~D~~~~~--Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~  192 (373)
                      +++++++|.....  +......|+.....                      ...+.|+++|+||+|+.+.   ...++..
T Consensus        81 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~p~iiv~NK~D~~~~---~~~~~~~  135 (180)
T d1udxa2          81 RVLLYVLDAADEPLKTLETLRKEVGAYDP----------------------ALLRRPSLVALNKVDLLEE---EAVKALA  135 (180)
T ss_dssp             SEEEEEEETTSCHHHHHHHHHHHHHHHCH----------------------HHHHSCEEEEEECCTTSCH---HHHHHHH
T ss_pred             hhhhhhcccccccccchhhhhhhhhcccc----------------------ccchhhhhhhhhhhhhhhH---HHHHHHH
Confidence            9999999986532  33333344433221                      1135699999999999764   2234455


Q ss_pred             HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        193 AYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       193 ~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      +.....+.+++++||++|+||++|++.|.+.+.
T Consensus       136 ~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l~  168 (180)
T d1udxa2         136 DALAREGLAVLPVSALTGAGLPALKEALHALVR  168 (180)
T ss_dssp             HHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            556667889999999999999999999988775

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=8.9e-18  Score=142.65  Aligned_cols=152  Identities=16%  Similarity=0.050  Sum_probs=94.2

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccc---------cccchhhccCC
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERY---------HTLAPMYYRNA  114 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~---------~~l~~~~~~~a  114 (373)
                      .|+++|.   |||||+++|++......  +.+.+.......++.....+.+||++|....         ......++..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a   81 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   81 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence            4677886   99999999998766533  2222211112222333356889999985221         12233446789


Q ss_pred             cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH
Q psy18160        115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY  194 (373)
Q Consensus       115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~  194 (373)
                      |+++++.|.++...... ..++..+..                        .++|+++|+||+|+.++   ...+...++
T Consensus        82 d~i~~~~~~~~~~~~~~-~~~~~~l~~------------------------~~~pviiv~NK~Dl~~~---~~~~~~~~~  133 (171)
T d1mkya1          82 DLVLFVVDGKRGITKED-ESLADFLRK------------------------STVDTILVANKAENLRE---FEREVKPEL  133 (171)
T ss_dssp             SEEEEEEETTTCCCHHH-HHHHHHHHH------------------------HTCCEEEEEESCCSHHH---HHHHTHHHH
T ss_pred             cEEEEeecccccccccc-ccccccccc------------------------ccccccccchhhhhhhh---hhhHHHHHH
Confidence            99999999876554433 344454544                        35799999999998542   222222333


Q ss_pred             HHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160        195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE  228 (373)
Q Consensus       195 ~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~  228 (373)
                      .+....+++++||++|.||++++++|++.+.++.
T Consensus       134 ~~~~~~~~i~iSAk~g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         134 YSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             GGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             HhcCCCCeEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence            3333456899999999999999999999887543

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=4.2e-16  Score=136.25  Aligned_cols=114  Identities=11%  Similarity=0.102  Sum_probs=85.4

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEE-CCEEEEEEEEeCCCccccc-ccchhhccCCcEEEEEE
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCL-DDVTIRFEIWDTAGQERYH-TLAPMYYRNAQAAIIVY  121 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~~-~l~~~~~~~ad~iilv~  121 (373)
                      .|+++|.   |||||+++|+++++...  |++.++..  +.+ ++..+.+.+||++|++++. ..+..+++.++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEE--EEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            4788887   99999999999988777  66666543  333 4556789999999999885 46788889999999999


Q ss_pred             ECCCHhhH-HHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160        122 DITNQDTF-GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       122 D~~~~~Sf-~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  182 (373)
                      |+++..++ ....+|+..+...                  .......+|++||+||+|+...
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~------------------~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLID------------------SMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHH------------------HHTSTTCCEEEEEEECTTSTTC
T ss_pred             EcccccccHHHHHHHHHHHHHh------------------HHHhhcCCcEEEEEECcccCCC
Confidence            99998764 4554554443220                  0123457899999999999764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=3.8e-17  Score=136.77  Aligned_cols=143  Identities=15%  Similarity=0.112  Sum_probs=95.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc--ceee--eEEEEEEEECCEEEEEEEEeCCCccccc---------ccchhhc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSA--AFITQTVCLDDVTIRFEIWDTAGQERYH---------TLAPMYY  111 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~e~~~---------~l~~~~~  111 (373)
                      ++++++|.   |||||+|+|++.+....  +.+.  ......+..++  ..+.+|||+|.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            58999998   99999999998764433  1111  11223444555  457899999952111         1112236


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160        112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG  191 (373)
Q Consensus       112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~  191 (373)
                      +.+|++++|+|.+++.+.+...-+ ..+                          ...++++++||.|+.+.   ...++.
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-~~~--------------------------~~~~~i~~~~k~d~~~~---~~~~~~  128 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-ERI--------------------------KNKRYLVVINKVDVVEK---INEEEI  128 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-HHH--------------------------TTSSEEEEEEECSSCCC---CCHHHH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-hhc--------------------------ccccceeeeeeccccch---hhhHHH
Confidence            789999999999988765543321 111                          34578999999999764   333333


Q ss_pred             HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                      .+.. ..+.+++++||++|.||++|+++|.++
T Consensus       129 ~~~~-~~~~~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         129 KNKL-GTDRHMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             HHHH-TCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             HHHh-CCCCcEEEEECCCCCCHHHHHHHHHhc
Confidence            2221 234689999999999999999998764

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=8.7e-17  Score=142.59  Aligned_cols=156  Identities=13%  Similarity=0.100  Sum_probs=110.2

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCcceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI  123 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~  123 (373)
                      ..|+++||.   |||||++||..+++.+ |+|...  ..+.+++  +.+++||++|++.++..|..++++++++++++|+
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~~p-TiG~~~--~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~   80 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHVVL-TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVAS   80 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHCCC-CCSCEE--EEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEET
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCcCC-CCCeEE--EEEEECc--EEEEEEecCccceeccchhhhcccccceEEEEEc
Confidence            468999997   9999999998887765 888653  4556665  6789999999999999999999999999999999


Q ss_pred             CCHhh----------HHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc---c----
Q psy18160        124 TNQDT----------FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC---V----  186 (373)
Q Consensus       124 ~~~~S----------f~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~---v----  186 (373)
                      ++...          +.+...++..+..                    .....++|++|+|||+|+.++...   .    
T Consensus        81 s~~~~~~~~~~~~~r~~e~~~~~~~il~--------------------~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~  140 (221)
T d1azta2          81 SSYNMVIREDNQTNRLQEALNLFKSIWN--------------------NRWLRTISVILFLNKQDLLAEKVLAGKSKIED  140 (221)
T ss_dssp             TGGGCBCTTTSCSBHHHHHHHHHHHHHT--------------------CGGGSSCEEEEEEECHHHHHHHHHHCSSCHHH
T ss_pred             cccccccccccchHHHHHHHHHHHHHhc--------------------ChhhCCCcEEEEechhhhhhhhhccCcccHHH
Confidence            86432          2222222222222                    133468999999999998542100   0    


Q ss_pred             ----------------------CHHHHHHHH-----HHc--------CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160        187 ----------------------EYSEGEAYA-----EEN--------GLLFMETSAKTAMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       187 ----------------------~~~e~~~~~-----~~~--------~~~~~evSak~~~gI~~lf~~L~~~i~~~  227 (373)
                                            ..+++.++.     +.+        .+-.+++||.+..||+.+|..+.+.|.++
T Consensus       141 ~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         141 YFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             HCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             hCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                                  122232222     111        12356899999999999999887777654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.65  E-value=1.1e-16  Score=137.04  Aligned_cols=154  Identities=14%  Similarity=0.088  Sum_probs=100.9

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc--------ceeeeEE--EEEEEECCEEEEEEEEeCCCcccccccchhhcc
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--------LFSAAFI--TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYR  112 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--------Tig~~~~--~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~  112 (373)
                      +.++++++|.   |||||+|++++......        ..|....  ...+..++  ..+.++|++|+..|.......+.
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhhh
Confidence            4578999997   99999999996432221        1111111  11122233  45789999999999888888899


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH-H
Q psy18160        113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE-G  191 (373)
Q Consensus       113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e-~  191 (373)
                      .+|++++|+|.++....+... .+..+..                        .++|+++|.||+|+.........++ .
T Consensus        82 ~~d~~ilv~d~~~g~~~~~~~-~~~~~~~------------------------~~~p~iiv~NKiD~~~~~~~~~~~~~~  136 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQTGE-HMLILDH------------------------FNIPIIVVITKSDNAGTEEIKRTEMIM  136 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHHHH-HHHHHHH------------------------TTCCBCEEEECTTSSCHHHHHHHHHHH
T ss_pred             hccccccccccccccchhhhh-hhhhhhh------------------------cCCcceeccccccccCHHHHHHHHHHH
Confidence            999999999998765433222 2223333                        4679999999999865411111111 1


Q ss_pred             HHHHHHc----CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        192 EAYAEEN----GLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       192 ~~~~~~~----~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ..+.+..    +.+++++||++|+|+++|++.|.+.+.+
T Consensus       137 ~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         137 KSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             HHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            2222221    3579999999999999999999887764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=6.9e-16  Score=132.33  Aligned_cols=156  Identities=18%  Similarity=0.120  Sum_probs=100.9

Q ss_pred             CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCccccc----------
Q psy18160         42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH----------  104 (373)
Q Consensus        42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~----------  104 (373)
                      +...+.++++++|.   |||||+|++++......    ..........+.+++.  .+.++|++|.....          
T Consensus         3 p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~   80 (186)
T d1mkya2           3 PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKY   80 (186)
T ss_dssp             CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCS
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccc
Confidence            44456799999997   99999999998765332    1111111224455654  46788998864322          


Q ss_pred             --ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160        105 --TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       105 --~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  182 (373)
                        ......++.+|++++|+|+...... ....++..+..                        .+.|+++|+||+|+...
T Consensus        81 ~~~~~~~~~~~~dvii~v~d~~~~~~~-~~~~~~~~~~~------------------------~~~~~i~v~nK~D~~~~  135 (186)
T d1mkya2          81 SNYRVVDSIEKADVVVIVLDATQGITR-QDQRMAGLMER------------------------RGRASVVVFNKWDLVVH  135 (186)
T ss_dssp             CCHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH------------------------TTCEEEEEEECGGGSTT
T ss_pred             hhHHHHHHHhcCCEEEEeecccccchh-hHHHHHHHHHH------------------------cCCceeeeccchhhhcc
Confidence              2233346789999999999765432 22334444444                        46799999999998765


Q ss_pred             CcccCHHHHHHHHHHc-----CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        183 RRCVEYSEGEAYAEEN-----GLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       183 ~~~v~~~e~~~~~~~~-----~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                       .....++..+..+..     ..+++++||++|.||++|++.|.+.+.
T Consensus       136 -~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         136 -REKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             -GGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             -hhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence             333344444433331     257999999999999999999976553

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.63  E-value=1.2e-15  Score=130.47  Aligned_cols=156  Identities=15%  Similarity=0.024  Sum_probs=92.5

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccc---------------cccchh
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERY---------------HTLAPM  109 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~---------------~~l~~~  109 (373)
                      .|+++|.   |||||+|++++.+.... +.|.+.....+...+    +.+|||||....               ......
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~   77 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED   77 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccccccccc----ceecccCCceeccccccccccccchhhhhhhhh
Confidence            3678886   99999999998776543 333222223333443    578999995211               112234


Q ss_pred             hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160        110 YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS  189 (373)
Q Consensus       110 ~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~  189 (373)
                      .++.+|++++|+|................           ........+.+.   ..+.|+++|+||+|+... .   .+
T Consensus        78 ~~~~~d~~~~vvD~~~~~~~~~~~~~~~~-----------~~~d~~~~~~l~---~~~~p~iiv~NK~D~~~~-~---~~  139 (184)
T d2cxxa1          78 NAKNIDVAVLVVDGKAAPEIIKRWEKRGE-----------IPIDVEFYQFLR---ELDIPTIVAVNKLDKIKN-V---QE  139 (184)
T ss_dssp             HGGGCCEEEEEEETTHHHHHHHHHHHTTC-----------CCHHHHHHHHHH---HTTCCEEEEEECGGGCSC-H---HH
T ss_pred             cccccchheeeeeccccchhhhhhhhccc-----------cHHHHHHHHHHH---HcCCCEEEEEeeeehhhh-H---HH
Confidence            46789999999999765432221110000           000000011111   146899999999997653 1   11


Q ss_pred             HHHHHHHHcC-------CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        190 EGEAYAEENG-------LLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       190 e~~~~~~~~~-------~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ....+.+..+       ..++++||++|.||++|++.|.+.+.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         140 VINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            1222223322       248899999999999999999987764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.55  E-value=4e-15  Score=132.22  Aligned_cols=151  Identities=17%  Similarity=0.071  Sum_probs=97.0

Q ss_pred             EEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEE--------------EEECCEEEEEEEEeCCCcccccccc
Q psy18160         50 QIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQT--------------VCLDDVTIRFEIWDTAGQERYHTLA  107 (373)
Q Consensus        50 ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~--------------i~~~~~~v~l~i~Dt~G~e~~~~l~  107 (373)
                      ++++|.   |||||++++++......     |.........              ..++.....+.++||||++.|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            778886   99999999987643322     1111111100              0112233467899999999998888


Q ss_pred             hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccC
Q psy18160        108 PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE  187 (373)
Q Consensus       108 ~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~  187 (373)
                      ...+..+|++|+|+|+.+.-.... .+.+..+..                        .++|++||.||+|+........
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~------------------------~~~p~iivlNK~D~~~~~~~~~  142 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRM------------------------YRTPFVVAANKIDRIHGWRVHE  142 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH------------------------TTCCEEEEEECGGGSTTCCCCT
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhc------------------------CCCeEEEEEECccCCCchhhhh
Confidence            888999999999999987543332 233333433                        4679999999999865422111


Q ss_pred             H-------------------HHHH----HHHHHc--------------CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        188 Y-------------------SEGE----AYAEEN--------------GLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       188 ~-------------------~e~~----~~~~~~--------------~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      .                   +...    .+....              ..+++++||++|.|+++|++.|.....
T Consensus       143 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~  217 (227)
T d1g7sa4         143 GRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (227)
T ss_dssp             TCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            0                   0000    111110              136899999999999999998876553

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.55  E-value=1.6e-15  Score=130.10  Aligned_cols=152  Identities=16%  Similarity=0.121  Sum_probs=95.1

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccc----cccchh---hccC
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERY----HTLAPM---YYRN  113 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~----~~l~~~---~~~~  113 (373)
                      .|+++|.   |||||+|++++.+....     |.....  ....+.+ ...+.+|||||..+.    ..+...   .+..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~--~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~   79 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL--GMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIER   79 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE--EEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeee--ceeEecC-CcEEEEecCCCcccCchHHHHHHHHHHHHHHH
Confidence            4778887   99999999988764433     333222  2333322 124789999996322    222222   2457


Q ss_pred             CcEEEEEEECCCHhhHHHHHHH--HHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160        114 AQAAIIVYDITNQDTFGRAKSW--VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG  191 (373)
Q Consensus       114 ad~iilv~D~~~~~Sf~~i~~~--l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~  191 (373)
                      ++.++++++............+  ......                  .......++|+++|+||+|+.+.     .+..
T Consensus        80 ~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~kp~ivv~NK~Dl~~~-----~~~~  136 (185)
T d1lnza2          80 TRVIVHVIDMSGLEGRDPYDDYLTINQELS------------------EYNLRLTERPQIIVANKMDMPEA-----AENL  136 (185)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHH------------------HSCSSTTTSCBCBEEECTTSTTH-----HHHH
T ss_pred             hhhhhheeeecccccchhhhhhhhhhhccc------------------hhhhhccCCcchhhccccchHhH-----HHHH
Confidence            8999988887654432222211  111111                  11123457899999999998653     2233


Q ss_pred             HHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        192 EAYAEEN--GLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       192 ~~~~~~~--~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      +.+.+..  +.+++.+||++|.||++|++.|.+.+.+
T Consensus       137 ~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         137 EAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             HHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             HHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            4444444  5789999999999999999999988753

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.53  E-value=6e-14  Score=121.41  Aligned_cols=158  Identities=16%  Similarity=0.140  Sum_probs=102.6

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--------ceeeeEEEEEEEE-------------------CCEEEEEEE
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--------LFSAAFITQTVCL-------------------DDVTIRFEI   94 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--------Tig~~~~~~~i~~-------------------~~~~v~l~i   94 (373)
                      ...+.++++|.   |||||++++++......        |....+.......                   ......+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            34678999997   99999999986422111        3322222211111                   113456889


Q ss_pred             EeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEE
Q psy18160         95 WDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAG  174 (373)
Q Consensus        95 ~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVg  174 (373)
                      +||||++.|.......++.+|++++|.|+.+........+.+..+...                       ...+++++.
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-----------------------~~~~iiv~i  139 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-----------------------GQKNIIIAQ  139 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-----------------------TCCCEEEEE
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-----------------------cCccceeee
Confidence            999999999887777788999999999998753222222223333321                       224588899


Q ss_pred             eCCCCCCCCcc-cCHHHHHHHHHHcC---CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        175 NKADLPTSRRC-VEYSEGEAYAEENG---LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       175 nK~Dl~~~~~~-v~~~e~~~~~~~~~---~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ||+|+.+.... ...++..++....+   ++++++||++|+||++|++.+.+.++
T Consensus       140 nK~D~~d~~~~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         140 NKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             ecccchhhHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            99998764111 11222333443332   57999999999999999999987664

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.51  E-value=1.7e-13  Score=119.54  Aligned_cols=159  Identities=11%  Similarity=0.097  Sum_probs=99.0

Q ss_pred             CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--------ceeeeEEEEEEEE------------------------CCE
Q psy18160         44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY--------LFSAAFITQTVCL------------------------DDV   88 (373)
Q Consensus        44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--------Tig~~~~~~~i~~------------------------~~~   88 (373)
                      ....+.++++|-   |||||++++++..-...        +.........+..                        ...
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKF   84 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEE
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccc
Confidence            345689999996   99999999986321111        1111111111111                        012


Q ss_pred             EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160         89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI  168 (373)
Q Consensus        89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (373)
                      ...+.+.||+|++.|....-..+..+|++|+|+|+.+.-.-....+-+..+..                       ..-.
T Consensus        85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~-----------------------~~i~  141 (205)
T d2qn6a3          85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-----------------------IGVK  141 (205)
T ss_dssp             EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-----------------------TTCC
T ss_pred             eEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHH-----------------------cCCc
Confidence            34688999999999987777778899999999999875211112222222322                       1234


Q ss_pred             eEEEEEeCCCCCCCCcccC-HHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        169 VIALAGNKADLPTSRRCVE-YSEGEAYAEEN---GLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       169 piilVgnK~Dl~~~~~~v~-~~e~~~~~~~~---~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      |++|+.||+|+.+...... ..+..++....   .++++++||++|.||++|++.|...++
T Consensus       142 ~iIV~vNK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         142 NLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             CEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             eeeeccccCCCccchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            7899999999976411111 11222233222   368999999999999999999887765

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.50  E-value=9.7e-14  Score=119.75  Aligned_cols=155  Identities=11%  Similarity=-0.005  Sum_probs=90.4

Q ss_pred             CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccc----------c
Q psy18160         41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERY----------H  104 (373)
Q Consensus        41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~----------~  104 (373)
                      +-|+....+++++|.   |||||+|++++.+....   ..+.+..........   .+.+.|+.+....          .
T Consensus        17 ~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~   93 (195)
T d1svia_          17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWG   93 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred             HCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhh
Confidence            334455568999997   99999999998653221   111111112222222   2345566553211          1


Q ss_pred             c---cchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160        105 T---LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT  181 (373)
Q Consensus       105 ~---l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  181 (373)
                      .   .....+..+|++++++|++++..-.. .++++.+..                        .++|+++|+||+|+..
T Consensus        94 ~~~~~~~~~~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~------------------------~~~piivv~NK~D~~~  148 (195)
T d1svia_          94 RMIETYITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKY------------------------YGIPVIVIATKADKIP  148 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH------------------------TTCCEEEEEECGGGSC
T ss_pred             hHHhhhhccccchhhhhhhhhccccccccc-ccccccccc------------------------ccCcceechhhccccC
Confidence            1   11233457899999999976543221 234444444                        3679999999999865


Q ss_pred             CCcccCHHHHHHHHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        182 SRRCVEYSEGEAYAEE----NGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       182 ~~~~v~~~e~~~~~~~----~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      . . ...+....+.+.    ...+++++||++|.|+++++++|.+.+.
T Consensus       149 ~-~-~~~~~~~~~~~~l~~~~~~~~~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         149 K-G-KWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             G-G-GHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             H-H-HHHHHHHHHHHHhcccCCCCEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            3 1 111222223233    3357999999999999999999987763

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.44  E-value=1.2e-13  Score=119.77  Aligned_cols=156  Identities=13%  Similarity=0.026  Sum_probs=103.1

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhC----------------cCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINV----------------VFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT  105 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~----------------~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~  105 (373)
                      ..+.++++|-   |||||+++++..                ..... ..|.+.....+.+......+.++||+|+..|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            3578999996   999999999752                11111 333333344444444456688999999999987


Q ss_pred             cchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc
Q psy18160        106 LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC  185 (373)
Q Consensus       106 l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~  185 (373)
                      .....++.+|++++|+|+.+...-+. .+.+..+..                       ....|+|++.||+|+......
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~-----------------------~~~~~iIv~iNK~D~~~~~~~  137 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ-----------------------IGVEHVVVYVNKADAVQDSEM  137 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH-----------------------TTCCCEEEEEECGGGCSCHHH
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHH-----------------------hcCCcEEEEEecccccccHHH
Confidence            77777899999999999987543222 222233333                       123578999999998653111


Q ss_pred             c--CHHHHHHHHHHcC-----CeEEEEcCCCC----------CCHHHHHHHHHHHcc
Q psy18160        186 V--EYSEGEAYAEENG-----LLFMETSAKTA----------MNVNEIFVEIAKKLP  225 (373)
Q Consensus       186 v--~~~e~~~~~~~~~-----~~~~evSak~~----------~gI~~lf~~L~~~i~  225 (373)
                      .  -..+...+....+     .+++.+||++|          .++.+|++.|.+.++
T Consensus       138 ~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         138 VELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            0  1123444555454     56999999988          588899888876653

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=3e-13  Score=114.52  Aligned_cols=149  Identities=17%  Similarity=0.102  Sum_probs=93.8

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCccc---------ccccchh
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQER---------YHTLAPM  109 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~---------~~~l~~~  109 (373)
                      +-.|+++|.   |||||+|+|++.+....     |..... ......+..  .+..||++|...         .......
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRI-VGIHTEGAY--QAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCE-EEEEEETTE--EEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEE-EeeeecCCc--eeEeecCCCceecchhhhhhhhhhcccc
Confidence            445778886   99999999998765433     222221 223333443  355688877421         1222333


Q ss_pred             hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160        110 YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS  189 (373)
Q Consensus       110 ~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~  189 (373)
                      ....+++++++.|..+...  ....+...+.+                        ...|.++|.||.|.... +.....
T Consensus        82 ~~~~~~~~l~~~d~~~~~~--~~~~~~~~l~~------------------------~~~~~i~v~~k~d~~~~-~~~~~~  134 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTP--DDEMVLNKLRE------------------------GKAPVILAVNKVDNVQE-KADLLP  134 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCH--HHHHHHHHHHS------------------------SSSCEEEEEESTTTCCC-HHHHHH
T ss_pred             chhhcceeEEEEecCccch--hHHHHHHHhhh------------------------ccCceeeeeeeeeccch-hhhhhh
Confidence            4457888888888775432  22222233322                        45678999999998765 222233


Q ss_pred             HHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        190 EGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       190 e~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ..+.+...++ .+++++||++|.||++|++.|++.+.
T Consensus       135 ~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~lp  171 (179)
T d1egaa1         135 HLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP  171 (179)
T ss_dssp             HHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred             HhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHHhCC
Confidence            4455555555 58999999999999999999988774

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=1.7e-12  Score=113.00  Aligned_cols=135  Identities=13%  Similarity=0.017  Sum_probs=87.5

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhC--------c--------CcCc------ceeeeEEEEEEEECCEEEEEEEEeCCCc
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINV--------V--------FYPY------LFSAAFITQTVCLDDVTIRFEIWDTAGQ  100 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~--------~--------~~~~------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~  100 (373)
                      ..+.++++|-   |||||+++++..        .        +.+.      |+...  ...+..++  ..+.|+||||+
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~--~~~~~~~~--~~i~iiDtPGh   77 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTA--HVEYETAK--RHYSHVDCPGH   77 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCE--EEEEECSS--CEEEEEECCCS
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEee--EEEEEeCC--eEEEEEeCCCc
Confidence            3578999996   999999999631        0        1111      33322  23445555  45778999999


Q ss_pred             ccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCC
Q psy18160        101 ERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADL  179 (373)
Q Consensus       101 e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl  179 (373)
                      ..|-......++.+|++|+|+|+.+....+..+-| ..+..                        .++| ++++.||+|+
T Consensus        78 ~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~-~~~~~------------------------~gi~~iiv~iNK~D~  132 (204)
T d2c78a3          78 ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQ------------------------VGVPYIVVFMNKVDM  132 (204)
T ss_dssp             GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHH------------------------TTCCCEEEEEECGGG
T ss_pred             hhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHH------------------------cCCCeEEEEEEeccc
Confidence            99988777888999999999999886655443333 33333                        3555 7778999998


Q ss_pred             CCCCccc--CHHHHHHHHHHcC-----CeEEEEcCCC
Q psy18160        180 PTSRRCV--EYSEGEAYAEENG-----LLFMETSAKT  209 (373)
Q Consensus       180 ~~~~~~v--~~~e~~~~~~~~~-----~~~~evSak~  209 (373)
                      .+.....  -.++...+...++     ++++..||..
T Consensus       133 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         133 VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCcccceeeeeechh
Confidence            6531111  1123344444444     4588888753

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.29  E-value=1.2e-11  Score=108.82  Aligned_cols=146  Identities=18%  Similarity=0.123  Sum_probs=93.5

Q ss_pred             CCCCCcEEEEEEcC---ChhHHHHHhhhC--cCcC-------------------------------c---ceeeeEEEEE
Q psy18160         42 KRQSDCMAQIWLKD---RVDCMTQIVINV--VFYP-------------------------------Y---LFSAAFITQT   82 (373)
Q Consensus        42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~--~~~~-------------------------------~---Tig~~~~~~~   82 (373)
                      ..+++.++++++|-   |||||+.+|+..  .+..                               .   .+..+.....
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            45667899999996   999999999631  1100                               0   1111222223


Q ss_pred             EEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhh
Q psy18160         83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQR  162 (373)
Q Consensus        83 i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      ...++  ..+.++|+||++.|-.....-+..+|++++|+|+.+...-+..+. +..+..                     
T Consensus        84 ~~~~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~-~~~~~~---------------------  139 (222)
T d1zunb3          84 FSTAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH-SYIASL---------------------  139 (222)
T ss_dssp             EECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHH-HHHHHH---------------------
T ss_pred             Eeccc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHH-HHHHHH---------------------
Confidence            33333  457899999999998877777889999999999987543332222 222222                     


Q ss_pred             cCCCCC-eEEEEEeCCCCCCCCccc---CHHHHHHHHHHcCC-----eEEEEcCCCCCCHH
Q psy18160        163 MAPPNI-VIALAGNKADLPTSRRCV---EYSEGEAYAEENGL-----LFMETSAKTAMNVN  214 (373)
Q Consensus       163 ~~~~~~-piilVgnK~Dl~~~~~~v---~~~e~~~~~~~~~~-----~~~evSak~~~gI~  214 (373)
                         .++ .++++.||+|+.+.....   ..++...+.+..++     +|+++||++|.||.
T Consensus       140 ---~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         140 ---LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             ---TTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ---cCCCEEEEEEEccccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence               233 489999999997642211   11233445555543     68999999999984

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=5.9e-12  Score=109.00  Aligned_cols=115  Identities=14%  Similarity=0.101  Sum_probs=80.2

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCcceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhc----cCCcEEEEE
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYY----RNAQAAIIV  120 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~----~~ad~iilv  120 (373)
                      ..++++|.   |||||+|+|++.++.+. .+.+.....  ++.....+.+||++|++++...+..++    ..++.++++
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~~~-tt~~~~~~~--~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~   80 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSA--ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM   80 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEE--TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCe-EEecceEEE--EEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceE
Confidence            37888887   99999999999988775 112222222  333445678999999998776665554    456888999


Q ss_pred             EECCC-HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160        121 YDITN-QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       121 ~D~~~-~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  182 (373)
                      +|..+ ..+++.+.+|+..+..                 .+......++|+++|+||+|+...
T Consensus        81 vd~~~~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          81 VDSTVDPKKLTTTAEFLVDILS-----------------ITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EETTSCTTCCHHHHHHHHHHHH-----------------HHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             EEEecccccHHHHHHHHHHHHH-----------------HHHHHHhccCCeEEEEEeeccccc
Confidence            99764 5677777766654432                 111234578999999999999764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1.7e-11  Score=103.68  Aligned_cols=159  Identities=9%  Similarity=-0.056  Sum_probs=81.4

Q ss_pred             cCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeE-EEEEEEECCEEEEEEEEeCCCcccccc-------c
Q psy18160         40 SGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAF-ITQTVCLDDVTIRFEIWDTAGQERYHT-------L  106 (373)
Q Consensus        40 ~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~-~~~~i~~~~~~v~l~i~Dt~G~e~~~~-------l  106 (373)
                      .+.|....++|+++|.   |||||+|++.+.+....  ..+... ....+........+..++..+......       .
T Consensus         9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (188)
T d1puia_           9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRA   88 (188)
T ss_dssp             GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHH
T ss_pred             hHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhh
Confidence            4555667899999998   99999999998876544  111111 111222222222233333322211111       1


Q ss_pred             chh---hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC
Q psy18160        107 APM---YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR  183 (373)
Q Consensus       107 ~~~---~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~  183 (373)
                      ...   ....++.++.+.|......... ..++..+..                        ...++++++||.|+.+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------------------~~~~~~~v~~k~D~~~~~  143 (188)
T d1puia_          89 LGEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD------------------------SNIAVLVLLTKADKLASG  143 (188)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH------------------------TTCCEEEEEECGGGSCHH
T ss_pred             hhhhhhhhhheeEEEEeecccccchhHH-HHHHHHhhh------------------------ccccccchhhhhhccCHH
Confidence            111   1234455666666654433222 334444433                        456899999999986531


Q ss_pred             cc-cCHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160        184 RC-VEYSEGEAYAEEN--GLLFMETSAKTAMNVNEIFVEIAKK  223 (373)
Q Consensus       184 ~~-v~~~e~~~~~~~~--~~~~~evSak~~~gI~~lf~~L~~~  223 (373)
                      .. ...++..+.....  ..+++.+||++|.||++|++.|..-
T Consensus       144 ~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         144 ARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             HHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence            10 1111222222222  2478999999999999999988654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.24  E-value=2.5e-12  Score=112.68  Aligned_cols=87  Identities=17%  Similarity=0.149  Sum_probs=66.5

Q ss_pred             chhhccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc
Q psy18160        107 APMYYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC  185 (373)
Q Consensus       107 ~~~~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~  185 (373)
                      .+..+.+.|.+++|+++.+|+ +...+++|+..+..                        .++|.+||.||+||.++   
T Consensus         4 ~RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~------------------------~~i~pvIvlnK~DL~~~---   56 (225)
T d1u0la2           4 TKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK------------------------NELETVMVINKMDLYDE---   56 (225)
T ss_dssp             TTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH------------------------TTCEEEEEECCGGGCCH---
T ss_pred             CCCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH------------------------cCCCEEEEEeCcccCCH---
Confidence            344578999999999998764 77888999888777                        58899999999999653   


Q ss_pred             cCHHHHHHHHHH--cCCeEEEEcCCCCCCHHHHHHHH
Q psy18160        186 VEYSEGEAYAEE--NGLLFMETSAKTAMNVNEIFVEI  220 (373)
Q Consensus       186 v~~~e~~~~~~~--~~~~~~evSak~~~gI~~lf~~L  220 (373)
                      ...+...++...  .+++++.+||+++.|++++...+
T Consensus        57 ~~~~~~~~~~~~~~~~~~v~~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          57 DDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             HHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred             HHHHHHHHhhcccccceeEEEeccccchhHhhHHHHh
Confidence            122233333332  34789999999999999987765

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.15  E-value=1.6e-12  Score=114.30  Aligned_cols=90  Identities=13%  Similarity=0.088  Sum_probs=67.1

Q ss_pred             chhhccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc
Q psy18160        107 APMYYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC  185 (373)
Q Consensus       107 ~~~~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~  185 (373)
                      .+....+.|.+++|+++.+|+ ++..+++|+..+..                        .+++.+||.||+||.++...
T Consensus         4 ~RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~------------------------~~i~pvIvlnK~DL~~~~~~   59 (231)
T d1t9ha2           4 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA------------------------NDIQPIICITKMDLIEDQDT   59 (231)
T ss_dssp             TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT------------------------TTCEEEEEEECGGGCCCHHH
T ss_pred             CCCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHH------------------------cCCCEEEEEecccccccHHH
Confidence            344568999999999998764 78889999887766                        68899999999999764110


Q ss_pred             -cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q psy18160        186 -VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEI  220 (373)
Q Consensus       186 -v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L  220 (373)
                       ...+...+.+...|++++.+||+++.|++++...|
T Consensus        60 ~~~~~~~~~~y~~~g~~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          60 EDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             HHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGG
T ss_pred             HHHHHHHHHHHhhccccceeeecCChhHHHHHHHhh
Confidence             01122233455679999999999999998875543

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.08  E-value=1.2e-10  Score=103.82  Aligned_cols=104  Identities=22%  Similarity=0.287  Sum_probs=57.5

Q ss_pred             EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhh---HH---HHHHHHHHHHhhCCCCCCcccccchhHHhhhhc
Q psy18160         90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT---FG---RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRM  163 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~S---f~---~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      ..+.+.||||+..|......-...+|++++|+|+.+..-   +.   ...+-+..+..                      
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~----------------------  159 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----------------------  159 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----------------------
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH----------------------
Confidence            468899999999998888888889999999999986421   10   11122222222                      


Q ss_pred             CCCCC-eEEEEEeCCCCCCCC-cccCHHH----HHHHHHHc-C------CeEEEEcCCCCCCHHHHH
Q psy18160        164 APPNI-VIALAGNKADLPTSR-RCVEYSE----GEAYAEEN-G------LLFMETSAKTAMNVNEIF  217 (373)
Q Consensus       164 ~~~~~-piilVgnK~Dl~~~~-~~v~~~e----~~~~~~~~-~------~~~~evSak~~~gI~~lf  217 (373)
                        .++ +++++.||+|+.... .+...++    ...+.+.. +      ++++++||++|+||.+++
T Consensus       160 --~~i~~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         160 --QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             --TTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             --cCCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence              233 488999999986431 1111222    22232222 2      479999999999997654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.03  E-value=1.8e-10  Score=101.42  Aligned_cols=146  Identities=14%  Similarity=0.104  Sum_probs=87.8

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCc-------------------------------CcCc-ceeeeEEEEEEEECCEEEE
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVV-------------------------------FYPY-LFSAAFITQTVCLDDVTIR   91 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~-------------------------------~~~~-Tig~~~~~~~i~~~~~~v~   91 (373)
                      .+.++++|-   |||||+.+++...                               .... ..|.........+..+...
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            578999996   9999999885310                               0000 1222221222223333467


Q ss_pred             EEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHH------HHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCC
Q psy18160         92 FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFG------RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP  165 (373)
Q Consensus        92 l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~------~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (373)
                      +.|.||||++.|......-++-+|++|+|+|+.+...-.      ...+-+..+..                       .
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-----------------------~  139 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-----------------------M  139 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-----------------------T
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-----------------------h
Confidence            899999999999988888899999999999998753111      11121222221                       1


Q ss_pred             CCCeEEEEEeCCCCCCCC-cccCH----HHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q psy18160        166 PNIVIALAGNKADLPTSR-RCVEY----SEGEAYAEENG-----LLFMETSAKTAMNVNE  215 (373)
Q Consensus       166 ~~~piilVgnK~Dl~~~~-~~v~~----~e~~~~~~~~~-----~~~~evSak~~~gI~~  215 (373)
                      ...+++++.||+|+.... .....    .+...+...++     ++++++||.+|.||.+
T Consensus       140 ~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         140 GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             TCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             CCCceEEEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            234688899999986421 11111    22334444444     4689999999999853

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.2e-11  Score=99.87  Aligned_cols=57  Identities=25%  Similarity=0.384  Sum_probs=52.5

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|+++||||+|++||+.+.|.+.|.||+|        .+|. +.+..++..+.|+|||.+
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~--------~~~~-~~~~~~~~~~~l~i~D~~   58 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE--------STYR-HQATIDDEVVSMEILDTA   58 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCcee--------cccc-ccccccccceEEEEeecc
Confidence            48999999999999999999999999999999999        7775 667789999999999976

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.98  E-value=1.9e-09  Score=97.17  Aligned_cols=104  Identities=17%  Similarity=0.168  Sum_probs=74.2

Q ss_pred             EEEEEcC---ChhHHHHHhhhC--cCcC---------------c------ceeeeEEEEEEEECCEEEEEEEEeCCCccc
Q psy18160         49 AQIWLKD---RVDCMTQIVINV--VFYP---------------Y------LFSAAFITQTVCLDDVTIRFEIWDTAGQER  102 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~--~~~~---------------~------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~  102 (373)
                      .++++|-   |||||+.+++..  ....               .      |+...  ...+.+++  ..+.|+||||+..
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~--~~~~~~~~--~~~n~iDtPG~~d   83 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFWKD--HRINIIDAPGHVD   83 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCS--EEEEEETT--EEEEEECCCSSSS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccc--eeeeccCC--eEEEEecCCchhh
Confidence            4777775   999999999632  1110               0      33322  23445555  4578999999999


Q ss_pred             ccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160        103 YHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT  181 (373)
Q Consensus       103 ~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  181 (373)
                      |.......++-+|++|+|+|..+.-.-....-| +.+.+                        .++|.+++.||.|...
T Consensus        84 F~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~------------------------~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          84 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK------------------------YKVPRIAFANKMDKTG  137 (276)
T ss_dssp             CSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHT------------------------TTCCEEEEEECTTSTT
T ss_pred             hHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHH------------------------cCCCEEEEEecccccc
Confidence            999888899999999999999886544444434 33333                        5889999999999754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=3.8e-11  Score=100.96  Aligned_cols=60  Identities=23%  Similarity=0.362  Sum_probs=51.2

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHHH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMM  364 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~~  364 (373)
                      ++|++++|+++||||+|++||+.+.|...|.||+|        ++|..+.+.+++..+.+.|||++-.
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~--------~~~~~~~~~~~~~~~~l~i~D~~g~   62 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--------VEVHPLVFHTNRGPIKFNVWDTAGQ   62 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETT--------EEEEEEEECBTTCCEEEEEEECTTH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCccccccee--------ccccccccccccccccccccccccc
Confidence            68999999999999999999999999999999999        8888888889999999999998743

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.96  E-value=8.7e-11  Score=106.58  Aligned_cols=128  Identities=16%  Similarity=0.150  Sum_probs=87.7

Q ss_pred             chhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160        107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV  186 (373)
Q Consensus       107 ~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v  186 (373)
                      ....++.+|++++|.|+.++.+..+-  .+..+.                         .+.|.++|.||+|+.+.   .
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~~-------------------------~~Kp~IlVlNK~DLv~~---~   58 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL-------------------------KNKPRIMLLNKADKADA---A   58 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC-------------------------SSSCEEEEEECGGGSCH---H
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCCH--HHHHHH-------------------------cCCCeEEEEECccCCch---H
Confidence            34568899999999999888764321  112211                         25699999999999753   1


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccce
Q psy18160        187 EYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHI  266 (373)
Q Consensus       187 ~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~  266 (373)
                      ..++..++.+..+...+.+|++++.++.++...+.+.+.+........+                               
T Consensus        59 ~~~~w~~~f~~~~~~~i~isa~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------------------  107 (273)
T d1puja_          59 VTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKG-------------------------------  107 (273)
T ss_dssp             HHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTT-------------------------------
T ss_pred             HHHHHHHHHHhcCCccceeecccCCCccccchhhhhhhhhhhhhhhhcc-------------------------------
Confidence            2333444555567889999999999999888877666554322100000                               


Q ss_pred             eecccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCc
Q psy18160        267 LTMANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQ  321 (373)
Q Consensus       267 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~  321 (373)
                                                .....++++++|-++||||||+|++....
T Consensus       108 --------------------------~~~~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         108 --------------------------VKPRAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             --------------------------CCCCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             --------------------------CCCCceEEEEEecCccchhhhhhhhhccc
Confidence                                      01123789999999999999999998653

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=3.7e-10  Score=100.23  Aligned_cols=141  Identities=13%  Similarity=0.040  Sum_probs=91.0

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhC----------------------cCc---------Cc-----ceeeeEEEEEEEEC
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINV----------------------VFY---------PY-----LFSAAFITQTVCLD   86 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~----------------------~~~---------~~-----Tig~~~~~~~i~~~   86 (373)
                      ..+.++++|-   |||||+.+++..                      .+.         ..     |+...  ...+..+
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~--~~~~~~~   82 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIA--LWKFETP   82 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCS--CEEEECS
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccc--eeEeccC
Confidence            4578999996   999999999621                      000         00     43332  3444555


Q ss_pred             CEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhh-------HHHHHHHHHHHHhhCCCCCCcccccchhHHh
Q psy18160         87 DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT-------FGRAKSWVKELQRMAPPNIDTFGRAKSWVKE  159 (373)
Q Consensus        87 ~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~S-------f~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~  159 (373)
                      +  .++.|.||||+..|-.....-++.+|++|+|+|+.+..-       .+..+.| ..+..                  
T Consensus        83 ~--~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~-~~~~~------------------  141 (239)
T d1f60a3          83 K--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT------------------  141 (239)
T ss_dssp             S--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH------------------
T ss_pred             C--EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHH-HHHHH------------------
Confidence            4  568899999999998877778899999999999975421       0111112 22222                  


Q ss_pred             hhhcCCCCC-eEEEEEeCCCCCCCCcc---cCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q psy18160        160 LQRMAPPNI-VIALAGNKADLPTSRRC---VEYSEGEAYAEENG-----LLFMETSAKTAMNVNE  215 (373)
Q Consensus       160 ~~~~~~~~~-piilVgnK~Dl~~~~~~---v~~~e~~~~~~~~~-----~~~~evSak~~~gI~~  215 (373)
                            -++ ++|++.||+|+.+....   ...++...+....+     ++++.+||.+|.|+-+
T Consensus       142 ------~gv~~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         142 ------LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             ------TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             ------cCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence                  234 58889999998654211   11223444555554     4689999999998654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.91  E-value=1.4e-08  Score=91.09  Aligned_cols=103  Identities=13%  Similarity=0.163  Sum_probs=73.1

Q ss_pred             EEEEEcC---ChhHHHHHhhhCc-----------------CcCc------ceeeeEEEEEEEECCEEEEEEEEeCCCccc
Q psy18160         49 AQIWLKD---RVDCMTQIVINVV-----------------FYPY------LFSAAFITQTVCLDDVTIRFEIWDTAGQER  102 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~-----------------~~~~------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~  102 (373)
                      .++++|.   |||||+.+++...                 +.+.      |+...  ...+..++.  ++.++||||+..
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~--~~~~~~~~~--~~n~iDtPGh~d   79 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTG--VAPLLFRGH--RVFLLDAPGYGD   79 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCE--EEEEEETTE--EEEEEECCCSGG
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEee--ccccccccc--ceeEEccCchhh
Confidence            4667775   9999999996211                 0000      44333  235566664  578999999999


Q ss_pred             ccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCC
Q psy18160        103 YHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP  180 (373)
Q Consensus       103 ~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~  180 (373)
                      |.......++-+|++|+|+|..+.-.-....-| ..+.+                        .++|.+++.||+|..
T Consensus        80 F~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~------------------------~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          80 FVGEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAER------------------------LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH------------------------TTCCEEEEEECGGGC
T ss_pred             hhhhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhh------------------------ccccccccccccccc
Confidence            988888889999999999999876554444434 33333                        478999999999964

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=98.90  E-value=1.7e-10  Score=96.64  Aligned_cols=58  Identities=28%  Similarity=0.344  Sum_probs=53.1

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +-+|++++|+++||||+|++||+.+.|...|.||+|        .+|. +.+.+++..+.|++||.+
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~--------~~~~-~~~~~~~~~~~l~i~d~~   60 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA--------DSYR-KKVVLDGEEVQIDILDTA   60 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccc--------cccc-cccccccccccccccccc
Confidence            357999999999999999999999999999999999        6775 778899999999999975

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.9e-10  Score=96.04  Aligned_cols=59  Identities=31%  Similarity=0.393  Sum_probs=54.2

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      ..+|++++|+++||||+|++||+.+.|.+.|.||++        .+|. +.+.++|..+.|+|||++.
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~d~~g   61 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE--------NTFT-KLITVNGQEYHLQLVDTAG   61 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCC--------EEEE-EEEEETTEEEEEEEEECCC
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCccee--------cccc-eEEecCcEEEEeeeccccc
Confidence            458999999999999999999999999999999999        7774 7888999999999999863

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=2e-10  Score=96.11  Aligned_cols=58  Identities=45%  Similarity=0.570  Sum_probs=54.6

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|+++||||+|+.||+.++|...|.||+|        .+|..+.+..+++.+.++|||++
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~--------~~~~~~~i~~~~~~~~l~i~d~~   60 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG--------AAFLTQRVTINEHTVKFEIWDTA   60 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc--------ceeeccccccccccccccccccC
Confidence            58999999999999999999999999999999999        78877888899999999999985

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.1e-10  Score=96.17  Aligned_cols=60  Identities=33%  Similarity=0.486  Sum_probs=55.7

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+|++++|+++||||||+++|+.+.|...+.+|++        .++..+.+.+++..++|.|||++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~Dt~   62 (171)
T d2ew1a1           3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG--------VDFMIKTVEINGEKVKLQIWDTA   62 (171)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCccccccc--------ceEEEEEEEECCEEEEEEEEECC
Confidence            4579999999999999999999999999999999999        78888888999999999999974

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=3.4e-10  Score=95.16  Aligned_cols=61  Identities=30%  Similarity=0.440  Sum_probs=40.0

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+..+|++++|+++||||+|+++|+.+.|...+.||+|        .++..+.+.+++.++.++|||++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~D~~   63 (173)
T d2fu5c1           3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIG--------IDFKIRTIELDGKRIKLQIWDTA   63 (173)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHC--------EEEEEEEEEETTEEEEEEEEEC-
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccc--------ceEEEEEEEECCEEEEEEEEECC
Confidence            35679999999999999999999999999999999999        78877888999999999999985

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.8e-10  Score=95.24  Aligned_cols=57  Identities=30%  Similarity=0.469  Sum_probs=52.3

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .||++++|+++||||||++||+.+.|.+.|.||+|        ..+. +.+.+++..+.+++||.+
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~--------~~~~-~~~~~~~~~~~l~~~d~~   58 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE--------DTYR-QVISCDKSICTLQITDTT   58 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCccee--------eccc-cceeeccccceecccccc
Confidence            58999999999999999999999999999999999        5554 677899999999999976

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=3.6e-10  Score=94.57  Aligned_cols=60  Identities=27%  Similarity=0.472  Sum_probs=55.2

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ++.+|++++|+++||||+|++||+.+.|...+.||+|        .++..+.+..++..++++|||++
T Consensus         3 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~wDt~   62 (169)
T d3raba_           3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG--------IDFKVKTIYRNDKRIKLQIWDTA   62 (169)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccc--------cceeeEEEEeecceEEEEEEECC
Confidence            4579999999999999999999999999999999999        77777888889999999999964

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.8e-10  Score=95.06  Aligned_cols=59  Identities=36%  Similarity=0.528  Sum_probs=55.1

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +.||++++|+++||||+|++||+.+.|.+.|.||++        .++..+.+..+++.+.+++||++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~d~~   60 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG--------ASFLTKKLNIGGKRVNLAIWDTA   60 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCS--------CEEEEEEEESSSCEEEEEEEECC
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc--------cchheeeeccCCccceeeeeccC
Confidence            468999999999999999999999999999999999        77877888899999999999986

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.6e-10  Score=97.00  Aligned_cols=60  Identities=18%  Similarity=0.191  Sum_probs=53.2

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ....+|++++|+++||||||++||+.+.|.+.|.||++         ++..+.+.++|..+.|+|||++
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~---------~~~~~~~~~~~~~~~l~i~D~~   65 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF---------DHYAVSVTVGGKQYLLGLYDTA   65 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC---------CCEEEEEESSSCEEEEEEECCC
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee---------eeeeEEEeeCCceEEeeccccc
Confidence            34569999999999999999999999999999999998         3445777889999999999976

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.3e-10  Score=94.61  Aligned_cols=57  Identities=33%  Similarity=0.470  Sum_probs=52.9

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|+++||||||++||+.+.|.+.|.||+|        .++. +.+.+++..+.+++||.+
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~--------~~~~-~~~~~~~~~~~~~~~d~~   59 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE--------DSYR-KQVEVDCQQCMLEILDTA   59 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSE--------EEEE-EEEESSSCEEEEEEEEEC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccc--------cccc-eeEEeeeeEEEecccccc
Confidence            58999999999999999999999999999999999        6664 778899999999999985

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.5e-10  Score=95.95  Aligned_cols=58  Identities=19%  Similarity=0.135  Sum_probs=52.5

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|+++||||+|++||+.+.|.+.|.||++        . +..+.+.+++..+++++||.+
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~--------~-~~~~~~~~~~~~~~~~~~d~~   61 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--------D-NYSANVMVDGKPVNLGLWDTA   61 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC--------C-EEEEEEEETTEEEEEEEECCC
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee--------e-ceeeeeeccCcceEEEeeccc
Confidence            468999999999999999999999999999999998        3 444778899999999999975

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=3.3e-09  Score=98.56  Aligned_cols=82  Identities=15%  Similarity=0.099  Sum_probs=61.0

Q ss_pred             CCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCC
Q psy18160         86 DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP  165 (373)
Q Consensus        86 ~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (373)
                      +++.+.+.++||||+..|.......++-+|++++|+|+.+.-..+...-|. .+..                        
T Consensus        92 ~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~-~a~~------------------------  146 (341)
T d1n0ua2          92 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG------------------------  146 (341)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH------------------------
T ss_pred             cccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHH-HHHH------------------------
Confidence            345778999999999999998888999999999999999866555444333 3333                        


Q ss_pred             CCCeEEEEEeCCCCCCCCcccCHHHHH
Q psy18160        166 PNIVIALAGNKADLPTSRRCVEYSEGE  192 (373)
Q Consensus       166 ~~~piilVgnK~Dl~~~~~~v~~~e~~  192 (373)
                      .++|++++.||+|....+-....+++.
T Consensus       147 ~~~p~i~viNKiDr~~~el~~~~~~~~  173 (341)
T d1n0ua2         147 ERIKPVVVINKVDRALLELQVSKEDLY  173 (341)
T ss_dssp             TTCEEEEEEECHHHHHHTSCCCHHHHH
T ss_pred             cCCCeEEEEECcccccccHHhhHHHHH
Confidence            478999999999974322234455543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=2.3e-10  Score=95.39  Aligned_cols=58  Identities=34%  Similarity=0.523  Sum_probs=47.1

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      -+|++++|++++|||||+++|+.+.|...|.||+|        .++..+.+.+++.++++.|||++
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~--------~~~~~~~i~~~~~~~~~~i~Dt~   59 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG--------IDFKIKTVDINGKKVKLQIWDTA   59 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC---------------CCEEEEEEESSSCEEEEEEECCT
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccc--------eeEEEEEEEECCEEEEEEEEECC
Confidence            38999999999999999999999999999999999        77777888899999999999975

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=4.1e-10  Score=93.92  Aligned_cols=57  Identities=32%  Similarity=0.463  Sum_probs=52.4

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|+++||||||++||+.+.|.+.|.||+|         ++..+.+.+++..+++++||.+
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~---------~~~~~~~~~~~~~~~l~~~d~~   59 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE---------DFYRKEIEVDSSPSVLEILDTA   59 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC---------EEEEEEEEETTEEEEEEEEECC
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee---------eeeeeeeecCcceEeeccccCC
Confidence            58999999999999999999999999999999998         4445788899999999999975

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.1e-10  Score=93.88  Aligned_cols=61  Identities=21%  Similarity=0.341  Sum_probs=55.4

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      +..+|++++|+++||||+|++||+.++|...+.+|++        .++..+.+.+++..++++|||++.
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~D~~g   62 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG--------VEFGTRIIEVSGQKIKLQIWDTAG   62 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCC--------CCEEEEEEEETTEEEEEEEEECTT
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccccccc--------ccceeEEEEECCEEEEEEEeccCC
Confidence            3569999999999999999999999999999999999        677777888999999999999863

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.6e-10  Score=94.33  Aligned_cols=58  Identities=22%  Similarity=0.243  Sum_probs=52.9

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|+++||||||++||+.+.|.+.|.||.+         ++..+.+.++|..+.|++||++
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~---------~~~~~~~~~~~~~~~l~~~d~~   62 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE---------DSYTKICSVDGIPARLDILDTA   62 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC---------EEEEEEEEETTEEEEEEEEECC
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc---------cceeeEeccCCeeeeeeccccc
Confidence            458999999999999999999999999999999986         5556888999999999999986

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=5.7e-10  Score=93.44  Aligned_cols=58  Identities=28%  Similarity=0.377  Sum_probs=53.0

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +.+|++++|++++|||+|++||+.+.|.+.|.||++        ..| .+.+.+++..+.++|||.+
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~~~i~d~~   60 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE--------DSY-LKHTEIDNQWAILDVLDTA   60 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCC--------EEE-EEEEEETTEEEEEEEEECC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCccee--------ecc-ccccccccccccccccccc
Confidence            359999999999999999999999999999999998        555 4778899999999999976

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=5.1e-10  Score=93.12  Aligned_cols=59  Identities=29%  Similarity=0.444  Sum_probs=53.8

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      .+|++++|+++||||+|++||+.+.|...|.||+|        .++....+..++..+.+++||++-
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~--------~~~~~~~~~~~~~~~~~~i~d~~g   60 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIG--------VDFLERQIQVNDEDVRLMLWDTAG   60 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCS--------SSEEEEEEEETTEEEEEEEECCTT
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc--------cccceeeeeecCceeeeeeeccCC
Confidence            48999999999999999999999999999999999        666667778899999999999863

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=5.7e-10  Score=93.99  Aligned_cols=57  Identities=23%  Similarity=0.302  Sum_probs=51.9

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..|++++|+++||||+|++||+.+.|.+.|.||+|        ..+ .+.+.+++..+.|+|||++
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~--------~~~-~~~~~~~~~~~~l~i~D~~   58 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF--------ENY-VADIEVDGKQVELALWDTA   58 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE--------EEE-EEEEEETTEEEEEEEEEEC
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee--------eec-cccccccccceeeeccccC
Confidence            47999999999999999999999999999999998        444 4778899999999999986

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.79  E-value=6e-10  Score=95.47  Aligned_cols=61  Identities=33%  Similarity=0.441  Sum_probs=55.4

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+..+|++++|+++||||||+++|+.+.|...|.||+|        ..+..+.+.+++..+.|.|||++
T Consensus         3 ~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~--------~~~~~~~i~~~~~~~~l~i~Dt~   63 (194)
T d2bcgy1           3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG--------VDFKIKTVELDGKTVKLQIWDTA   63 (194)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSC--------CCEEEEEEEETTEEEEEEEECCT
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccc--------eeEEEEEEEEeeEEEEEEEEECC
Confidence            45679999999999999999999999999999999999        66666778899999999999974

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=5.5e-10  Score=94.53  Aligned_cols=57  Identities=19%  Similarity=0.288  Sum_probs=51.9

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|+++||||+|+.||+.+.|.+.|.||++        ..+ .+.+.+++..+.++|||++
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~--------~~~-~~~~~~~~~~~~~~i~D~~   58 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF--------ENY-TASFEIDTQRIELSLWDTS   58 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE--------EEE-EEEEECSSCEEEEEEEEEC
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee--------ecc-cccccccceEEeecccccc
Confidence            47999999999999999999999999999999998        444 4788899999999999975

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=7.5e-10  Score=92.69  Aligned_cols=58  Identities=22%  Similarity=0.291  Sum_probs=52.3

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      .+|++++|+++||||+|++||+.+.|...|.||.|        . +..+.+.++|..+.+++||.+-
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~--------~-~~~~~~~~~~~~~~~~~~d~~g   62 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE--------D-SYTKQCVIDDRAARLDILDTAG   62 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC--------E-EEEEEEEETTEEEEEEEEECC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc--------c-ceeeeeeecccccccccccccc
Confidence            48999999999999999999999999999999998        4 4458889999999999999763

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=7.4e-10  Score=94.59  Aligned_cols=57  Identities=19%  Similarity=0.232  Sum_probs=52.0

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|+++||||||++||+.+.|...|.||+|        ..+ .+...++|+.+.++|||++
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~--------~~~-~~~~~~~~~~~~l~i~D~~   59 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF--------DNY-AVTVMIGGEPYTLGLFDTA   59 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE--------EEE-EEEEEETTEEEEEEEEEEC
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee--------eec-ceeEeeCCceeeeeccccc
Confidence            48999999999999999999999999999999998        544 4778899999999999976

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=9e-10  Score=92.12  Aligned_cols=60  Identities=30%  Similarity=0.426  Sum_probs=52.6

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccc-cccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHE-YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~-~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..||++++|+++||||+|++||+.++|.. .+.+|+|        .++....+.++|.+++|+|||++
T Consensus         4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~Dt~   64 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVG--------IDFRNKVLDVDGVKVKLQMWDTA   64 (170)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCS--------CEEEEEEEEETTEEEEEEEEECC
T ss_pred             ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceee--------eeeEEEEEEecCcEEEEEEEECC
Confidence            457999999999999999999999999865 4677888        77776778899999999999975

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=8.5e-10  Score=91.58  Aligned_cols=57  Identities=35%  Similarity=0.538  Sum_probs=52.4

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ||++++|+++||||||++||+.++|...|.||++        .+........++..+++.|||++
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~d~~   57 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG--------IDFLSKTMYLEDRTIRLQLWDTA   57 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCS--------EEEEEEEEECSSCEEEEEEEEEC
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCcccccee--------eeccceeeccCCCceeeeecccC
Confidence            6899999999999999999999999999999999        67666777789999999999985

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=1.4e-08  Score=96.73  Aligned_cols=153  Identities=10%  Similarity=0.046  Sum_probs=89.4

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceee---eEEEEEEEECCEEEEEEEEeCCCcccccccchh-----hcc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSA---AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPM-----YYR  112 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~---~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~-----~~~  112 (373)
                      .++|+++|.   |||||+|.+.+......   ..|.   +.....+...+ .-.+.+|||||..........     .+.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~~  134 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY  134 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhhh
Confidence            478999997   99999999998543322   1111   11111222221 123679999997654332222     356


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC------Cccc
Q psy18160        113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS------RRCV  186 (373)
Q Consensus       113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~------~~~v  186 (373)
                      .+|.++++.|..-.+  .+ .+++..+.+                        .+.|+++|.||+|....      .+..
T Consensus       135 ~~d~~l~~~~~~~~~--~d-~~l~~~l~~------------------------~~k~~~~V~nK~D~~~~~~~~~~~~~~  187 (400)
T d1tq4a_         135 EYDFFIIISATRFKK--ND-IDIAKAISM------------------------MKKEFYFVRTKVDSDITNEADGEPQTF  187 (400)
T ss_dssp             GCSEEEEEESSCCCH--HH-HHHHHHHHH------------------------TTCEEEEEECCHHHHHHHHHTTCCTTC
T ss_pred             cceEEEEecCCCCCH--HH-HHHHHHHHH------------------------cCCCEEEEEeCcccccchhhhcccccc
Confidence            789888887754322  22 234444444                        46799999999995310      0111


Q ss_pred             CHHHH--------HHHHHHcCC---eEEEEcCCC--CCCHHHHHHHHHHHcchh
Q psy18160        187 EYSEG--------EAYAEENGL---LFMETSAKT--AMNVNEIFVEIAKKLPKK  227 (373)
Q Consensus       187 ~~~e~--------~~~~~~~~~---~~~evSak~--~~gI~~lf~~L~~~i~~~  227 (373)
                      ..+..        ....+..++   ++|.+|..+  ..++.+|.+.+.+.+...
T Consensus       188 ~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         188 DKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            22211        112223333   578899764  458999999999888754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.7e-09  Score=90.42  Aligned_cols=61  Identities=62%  Similarity=0.851  Sum_probs=55.5

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+||++++|+++||||||+.||+.+.|...+.||++        .++....+..++..+.+.+||++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~d~~   63 (170)
T d1r2qa_           3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG--------AAFLTQTVCLDDTTVKFEIWDTA   63 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             ceeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc--------cccccceeeccceEEEEEeccCC
Confidence            45679999999999999999999999999999999999        77766777889999999999975

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.7e-09  Score=90.63  Aligned_cols=60  Identities=23%  Similarity=0.394  Sum_probs=54.4

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+|++++|+++||||+|++||+.+.|...|.||.+        .+.....+..++..+.++|||++
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~D~~   62 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIG--------VEFGSKIINVGGKYVKLQIWDTA   62 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSE--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc--------cceeeEEEEecCcceeEEEEECC
Confidence            4569999999999999999999999999999999999        67666777889999999999986

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2e-09  Score=89.57  Aligned_cols=57  Identities=25%  Similarity=0.398  Sum_probs=51.9

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|+++||||||++||+.+.|...|.||+|        .++. ..+.+++.++.+.+||..
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~l~~~d~~   59 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE--------DSYR-KQVVIDGETCLLDILDTA   59 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSE--------EEEE-EEEEETTEEEEEEEEEEC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccc--------eeec-cceeeeceeeeeeeeecc
Confidence            48999999999999999999999999999999999        6665 667789999999999964

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.9e-09  Score=90.39  Aligned_cols=61  Identities=31%  Similarity=0.408  Sum_probs=51.7

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ++..+|++++|+++||||+|++||+.+.|...|.+|++        ..+..+.+.+++..+.+++||.+
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~d~~   63 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG--------VEFLNKDLEVDGHFVTMQIWDTA   63 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCS--------EEEEEEEEEETTEEEEEEEEECC
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCcccccee--------eeeeeeeeeecCceeeEeeeccc
Confidence            34578999999999999999999999999999999999        77777888899999999999975

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=2.6e-09  Score=88.96  Aligned_cols=59  Identities=34%  Similarity=0.419  Sum_probs=54.0

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|+++||||||++||+.+.|...|.||++        .++....+..++....++|||++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~d~~   61 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG--------ASFMTKTVQYQNELHKFLIWDTA   61 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccc--------cccccccccccccccceeeeecC
Confidence            358999999999999999999999999999999999        77776777889999999999975

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=3.2e-09  Score=89.09  Aligned_cols=60  Identities=32%  Similarity=0.468  Sum_probs=51.3

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+|++++|+++||||||++||+.+.|...|.++++        .+.....+.+++..+.+.|||++
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~d~~   61 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--------VEFATRSIQVDGKTIKAQIWDTA   61 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCS--------CEEEEEEEEETTEEEEEEEEECS
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCccccccc--------ceeeeEEEEECCEEEEEEecccC
Confidence            4568999999999999999999999999999999999        66666778899999999999974

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=3.9e-09  Score=88.75  Aligned_cols=59  Identities=34%  Similarity=0.503  Sum_probs=54.5

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|+++||||+|++||..++|...+.++++        ..+..+.+.+++..+.+.|||++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~Dt~   64 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG--------VDFKVKTISVDGNKAKLAIWDTA   64 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCcccccee--------ecceeEEEEEeccccEEEEEECC
Confidence            468999999999999999999999999999999999        77777888899999999999974

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.63  E-value=3.6e-09  Score=89.47  Aligned_cols=59  Identities=27%  Similarity=0.357  Sum_probs=54.3

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      .+|++++|+++||||||++||+.+.|...|.||+|        .++..+.+.+.+..+.+.+||++.
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~d~~g   60 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG--------ADFLTKEVMVDDRLVTMQIWDTAG   60 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCS--------EEEEEEEEESSSCEEEEEEEEECS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccc--------eeeeeeeeeeCCceEEEEeeecCC
Confidence            38999999999999999999999999999999999        777777888999999999999863

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=5e-09  Score=88.22  Aligned_cols=57  Identities=23%  Similarity=0.268  Sum_probs=49.9

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +.+|++++|+++||||+|++||+.+.|.. +.+|.+        ..|. +.+.+||+.+.|+|||.+
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~--------~~~~-~~i~v~~~~~~l~i~Dt~   60 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES--------EQYK-KEMLVDGQTHLVLIREEA   60 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSC--------EEEE-EEEEETTEEEEEEEEECS
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccc--------eeEE-EEeecCceEEEEEEeecc
Confidence            35999999999999999999999999965 567887        6664 888999999999999974

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1e-08  Score=85.84  Aligned_cols=59  Identities=25%  Similarity=0.483  Sum_probs=47.9

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +.+|++++|+++||||||++||+.+.|...|.++.+        .+.........+..+.+.+||++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~d~~   60 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--------VEFGARMVNIDGKQIKLQIWDTA   60 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CC--------SSEEEEEEEETTEEEEEEEECCT
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCccccee--------eccceeeeeeeeeEEEEEeeccc
Confidence            358999999999999999999999999999999998        55555667778999999999986

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.3e-08  Score=84.79  Aligned_cols=56  Identities=21%  Similarity=0.254  Sum_probs=41.5

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      ||++++|+++||||+|+++|....+.. +.+|++        ..|. +.+.+++..+.|.|||++.
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~--------~~~~-~~i~~~~~~~~l~i~D~~g   57 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAG--------HTYD-RSIVVDGEEASLMVYDIWE   57 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------C--------EEEE-EEEEETTEEEEEEEEECC-
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC-cCCeee--------eeec-ceeeccccccceeeeeccc
Confidence            799999999999999999998877654 557777        5554 7888999999999999864

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.49  E-value=1.9e-07  Score=83.23  Aligned_cols=113  Identities=9%  Similarity=-0.030  Sum_probs=66.8

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc------ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc-------chh
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL-------APM  109 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l-------~~~  109 (373)
                      ..+.|+++|.   |||||+|.+++......      |...  .......++.  .+.++||||.......       ...
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~--~~~~~~~~g~--~i~viDTPGl~~~~~~~~~~~~~i~~  106 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRP--VMVSRSRAGF--TLNIIDTPGLIEGGYINDMALNIIKS  106 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSC--EEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeE--EEEEEEeccE--EEEEEeeecccCCcchHHHHHHHHHH
Confidence            4588999997   99999999998765443      3222  2334455664  5789999996432211       111


Q ss_pred             --hccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160        110 --YYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS  182 (373)
Q Consensus       110 --~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  182 (373)
                        .....|+++||++++... +-.+ ...+..+.....                   ..--.+++||.||+|....
T Consensus       107 ~~~~~~~~~il~v~~~~~~r~~~~~-~~~l~~l~~~fg-------------------~~~~~~~ivv~t~~D~~~~  162 (257)
T d1h65a_         107 FLLDKTIDVLLYVDRLDAYRVDNLD-KLVAKAITDSFG-------------------KGIWNKAIVALTHAQFSPP  162 (257)
T ss_dssp             HTTTCEECEEEEEEESSCCCCCHHH-HHHHHHHHHHHC-------------------GGGGGGEEEEEECCSCCCG
T ss_pred             HHhcCCCCeEEEEEECCCCCCCHHH-HHHHHHHHHHcc-------------------hhhhhCEEEEEECcccCCc
Confidence              124578999999886532 2221 112222222100                   0012368999999998654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.5e-08  Score=85.68  Aligned_cols=67  Identities=19%  Similarity=0.311  Sum_probs=48.8

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecce---eeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPT---KNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~---~~v~~~~~~l~iw~~~  362 (373)
                      +..+|++++|+++||||+|++||+.+.|...|.+|.+.+|..+. +.+....   ...++..+++.|||++
T Consensus         3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~i~dt~   72 (186)
T d2f7sa1           3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKR-VVYNAQGPNGSSGKAFKVHLQLWDTA   72 (186)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEE-EEEEC-------CCEEEEEEEEEEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEE-EEEecccccccccccceEEeccccCC
Confidence            45699999999999999999999999999999999994444333 1111111   1123456899999975

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=2.7e-08  Score=82.22  Aligned_cols=58  Identities=29%  Similarity=0.543  Sum_probs=52.9

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|+++||||+|++||+.+.|...+.+|++        ..+..+.+.+.+....+.+||..
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~   59 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG--------VDFRERAVDIDGERIKIQLWDTA   59 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCS--------CCEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccc--------cccceeeeeeeccceEEEEEecc
Confidence            48999999999999999999999999999999999        66766778889999999999974

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.5e-08  Score=83.37  Aligned_cols=57  Identities=25%  Similarity=0.231  Sum_probs=46.4

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccc-cccCCccccccccceeeeecceeeeCCeEEEEEehhh
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHE-YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWV  361 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~-~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~  361 (373)
                      .||++++|+++||||+|++||..+.+.. .+.+|+|        .++..+.+.++|+.+.+.+||+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~d~   60 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG--------EDTYERTLMVDGESATIILLDM   60 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CC--------TTEEEEEEEETTEEEEEEEECC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCcccccccee--------eecceeeeccCCceeeeeeecc
Confidence            4899999999999999999999877654 4557788        6666678889999999999996

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=1.3e-08  Score=86.48  Aligned_cols=52  Identities=27%  Similarity=0.158  Sum_probs=43.1

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|+++||||||+.||+.+.|.  |.||+|        +++.    .++...+.+++||++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG--------~~~~----~~~~~~~~~~~~d~~   53 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTG--------IIEY----PFDLQSVIFRMVDVG   53 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCS--------CEEE----EEECSSCEEEEEECC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC--CCceee--------EEEE----EEeccceeeeecccc
Confidence            589999999999999999999998884  789999        5542    234567888999875

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.39  E-value=2e-08  Score=83.13  Aligned_cols=54  Identities=28%  Similarity=0.372  Sum_probs=45.7

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||+|+++|..+.|...|.||+|        .++.  .+  +...+++++||++
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~--------~~~~--~~--~~~~~~~~i~D~~   55 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--------FNMR--KI--TKGNVTIKLWDIG   55 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCS--------EEEE--EE--EETTEEEEEEEEC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccce--------eeee--ee--eeeeEEEEEeecc
Confidence            48999999999999999999999999999999999        5443  33  3345789999984

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.33  E-value=3.5e-08  Score=82.30  Aligned_cols=58  Identities=24%  Similarity=0.403  Sum_probs=44.2

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceee-eCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKN-RLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~-v~~~~~~l~iw~~~  362 (373)
                      -+|++++|+++||||||+++|+.+.|...|.||.|.++..        .... .+...+.+.|||++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~--------~~~~~~~~~~~~~~~~d~~   60 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLT--------KEVTVDGDKVATMQVWDTA   60 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEE--------EEECCSSSCCEEEEEECCC
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceee--------eeeeecCcccccceeeccC
Confidence            3899999999999999999999999999999999943332        2222 34567889999975

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=2.9e-08  Score=84.41  Aligned_cols=52  Identities=31%  Similarity=0.323  Sum_probs=42.4

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      .+|++++|+++||||||++||   .|...+.||+|        +++.    .++.+.+++++||++-
T Consensus         2 ~iKivllG~~~vGKTsll~r~---~f~~~~~pTiG--------~~~~----~~~~~~~~~~~~D~~g   53 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKG--------IHEY----DFEIKNVPFKMVDVGG   53 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH---HHHHSCCCCSS--------EEEE----EEEETTEEEEEEEECC
T ss_pred             eEEEEEECCCCCCHHHHHHHH---hcCCCCCCeee--------eEEE----EEeeeeeeeeeecccc
Confidence            389999999999999999999   58889999999        4432    3455678889998753

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.27  E-value=1.4e-07  Score=82.47  Aligned_cols=110  Identities=14%  Similarity=0.055  Sum_probs=63.5

Q ss_pred             EEEEEeCCCcccccccchh---h--ccCCcEEEEEEECC---CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhh
Q psy18160         91 RFEIWDTAGQERYHTLAPM---Y--YRNAQAAIIVYDIT---NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQR  162 (373)
Q Consensus        91 ~l~i~Dt~G~e~~~~l~~~---~--~~~ad~iilv~D~~---~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      .+.+.|++|+..+......   .  ....+.++++.|..   ++..+.........+..                     
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~---------------------  154 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL---------------------  154 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH---------------------
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH---------------------
Confidence            4778899998765332222   1  22466889999975   33333322211111111                     


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCcccC-------HHHH---------------H---HHHHH--cCCeEEEEcCCCCCCHHH
Q psy18160        163 MAPPNIVIALAGNKADLPTSRRCVE-------YSEG---------------E---AYAEE--NGLLFMETSAKTAMNVNE  215 (373)
Q Consensus       163 ~~~~~~piilVgnK~Dl~~~~~~v~-------~~e~---------------~---~~~~~--~~~~~~evSak~~~gI~~  215 (373)
                        .-..|.++|.||+|+........       ....               .   ...++  ..++++++||++|+|+++
T Consensus       155 --~~~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~  232 (244)
T d1yrba1         155 --RLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFED  232 (244)
T ss_dssp             --HHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHH
T ss_pred             --HhCCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHH
Confidence              12578999999999876311000       0000               0   00111  236899999999999999


Q ss_pred             HHHHHHHH
Q psy18160        216 IFVEIAKK  223 (373)
Q Consensus       216 lf~~L~~~  223 (373)
                      ++..|.+.
T Consensus       233 L~~~l~e~  240 (244)
T d1yrba1         233 LETLAYEH  240 (244)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.11  E-value=9.5e-08  Score=80.51  Aligned_cols=49  Identities=24%  Similarity=0.240  Sum_probs=38.7

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|+.|||||||++||..+.|     ||+|        +    .+..++...++++|||+|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~-----~t~~--------~----~~~~~~~~~~~~~i~D~~   50 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHE-----AGTG--------I----VETHFTFKDLHFKMFDVG   50 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHS-----CCCS--------E----EEEEEEETTEEEEEEEEC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCC-----CCcc--------E----EEEEEEeeeeeeeeeccc
Confidence            58999999999999999999987766     5566        2    233455667899999986

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.08  E-value=2.2e-07  Score=76.52  Aligned_cols=53  Identities=19%  Similarity=0.323  Sum_probs=42.2

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      .+|++++|++++|||||+++|..+.+ ..+.||+|        ...  ..  ++...+.+.|||++
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~--------~~~--~~--~~~~~~~~~~~D~~   54 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLG--------FNI--KT--LEHRGFKLNIWDVG   54 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSS--------EEE--EE--EEETTEEEEEEEEC
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEe--------eee--ee--ccccccceeeeecC
Confidence            48999999999999999999988776 45889998        333  22  34456889999985

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.91  E-value=5.4e-07  Score=73.04  Aligned_cols=52  Identities=15%  Similarity=0.183  Sum_probs=41.9

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +|++++|+++||||||++|+..++|...+..+..             ....++...+.+.+||+.
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~d~~   52 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-------------NVETVEYKNISFTVWDVG   52 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC-------------CEEEEECSSCEEEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee-------------EEEEEeeeeEEEEEecCC
Confidence            5899999999999999999999988776655443             233456788899999975

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.91  E-value=1.8e-05  Score=72.30  Aligned_cols=102  Identities=12%  Similarity=0.066  Sum_probs=58.6

Q ss_pred             EEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeE
Q psy18160         91 RFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVI  170 (373)
Q Consensus        91 ~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi  170 (373)
                      .+.|++|.|.-.-   -.....-+|.+++|......+..+.++.   .+.                          .++=
T Consensus       145 d~iiiETVG~gq~---e~~~~~~~D~~v~v~~p~~GD~iQ~~k~---gil--------------------------E~aD  192 (323)
T d2qm8a1         145 DVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKK---GIF--------------------------ELAD  192 (323)
T ss_dssp             CEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCT---THH--------------------------HHCS
T ss_pred             CeEEEeehhhhhh---hhhhhcccceEEEEeeccchhhhhhhhh---hHh--------------------------hhhh
Confidence            4556677653211   1223456999999999887654443321   111                          1233


Q ss_pred             EEEEeCCCCCCCCcccCHHHHHHHHHH----------cCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160        171 ALAGNKADLPTSRRCVEYSEGEAYAEE----------NGLLFMETSAKTAMNVNEIFVEIAKKLP  225 (373)
Q Consensus       171 ilVgnK~Dl~~~~~~v~~~e~~~~~~~----------~~~~~~evSak~~~gI~~lf~~L~~~i~  225 (373)
                      ++|.||+|+.+.. .........+...          ...+++.+||++++|++++++.|.+...
T Consensus       193 i~vvNKaD~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         193 MIAVNKADDGDGE-RRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             EEEEECCSTTCCH-HHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             eeeEeccccccch-HHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            8999999987641 1111111122222          2346999999999999999999976543

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.89  E-value=1.1e-06  Score=72.97  Aligned_cols=55  Identities=15%  Similarity=0.239  Sum_probs=42.4

Q ss_pred             ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +..+|++++|++++|||||++||..+.|... .+|+|        .++  +.+..  ..+.+++||++
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~--------~~~--~~i~~--~~~~~~i~d~~   68 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--------FNI--KSVQS--QGFKLNVWDIG   68 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETT--------EEE--EEEEE--TTEEEEEEECS
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeee--------eeE--EEecc--CCeeEeEeecc
Confidence            3468999999999999999999999998754 46778        433  33333  45788999975

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.89  E-value=2.4e-05  Score=70.39  Aligned_cols=27  Identities=11%  Similarity=0.060  Sum_probs=22.6

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCcCc
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFYPY   72 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~   72 (373)
                      ...+++|+|.   |||||+|.+++..+.+.
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~   54 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPR   54 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCC
Confidence            3457999998   99999999999887554

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=97.87  E-value=8.1e-07  Score=74.30  Aligned_cols=55  Identities=18%  Similarity=0.318  Sum_probs=42.4

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM  363 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~  363 (373)
                      ..+|++++|+++||||||++|+..+.+.. +.||.|        ..+    ..++...+++.+||++.
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~--------~~~----~~~~~~~~~~~i~D~~g   70 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIG--------FNV----ETLSYKNLKLNVWDLGG   70 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTT--------CCE----EEEEETTEEEEEEEEC-
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccc--------eEE----EEEeeCCEEEEEEeccc
Confidence            46999999999999999999999988865 458888        222    22234568889999874

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=2.8e-06  Score=78.03  Aligned_cols=86  Identities=16%  Similarity=0.022  Sum_probs=49.3

Q ss_pred             hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc-cCH
Q psy18160        110 YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC-VEY  188 (373)
Q Consensus       110 ~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~-v~~  188 (373)
                      +...+|.+++|.+....+..+.++.-   +.+                          ++=++|.||+|+...... ...
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k~g---i~e--------------------------~aDi~VvNKaD~~~~~~~~~~~  214 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIKKG---LME--------------------------VADLIVINKDDGDNHTNVAIAR  214 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCCHH---HHH--------------------------HCSEEEECCCCTTCHHHHHHHH
T ss_pred             hhhccceEEEEecCCCchhhhhhchh---hhc--------------------------cccEEEEEeecccchHHHHHHH
Confidence            45678999999876544433322222   222                          122788899998653111 111


Q ss_pred             HHHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160        189 SEGEAYAEE-------NGLLFMETSAKTAMNVNEIFVEIAKKL  224 (373)
Q Consensus       189 ~e~~~~~~~-------~~~~~~evSak~~~gI~~lf~~L~~~i  224 (373)
                      .+.....+.       ...+++.+||++|+||+++++.|.+..
T Consensus       215 ~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         215 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             HHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            122222221       224799999999999999999987644

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.81  E-value=1.2e-06  Score=75.87  Aligned_cols=51  Identities=25%  Similarity=0.159  Sum_probs=39.4

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|++++|||||+.||..+.    +.||+|        ++.  ..+.++  .+.+++||++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~----~~pTiG--------~~~--~~~~~~--~~~~~~~D~~   55 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILH----VVLTSG--------IFE--TKFQVD--KVNFHMFDVG   55 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHH----CCCCCS--------CEE--EEEEET--TEEEEEEECC
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCC----cCCCCC--------eEE--EEEEEC--cEEEEEEecC
Confidence            45899999999999999999997554    569999        333  334444  4788999986

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.79  E-value=2.1e-05  Score=71.19  Aligned_cols=26  Identities=8%  Similarity=0.096  Sum_probs=22.5

Q ss_pred             cEEEEEEcC---ChhHHHHHhhhCcCcCc
Q psy18160         47 CMAQIWLKD---RVDCMTQIVINVVFYPY   72 (373)
Q Consensus        47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~   72 (373)
                      ..+++|+|.   |||||+|.+++.++.+.
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~   52 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPR   52 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence            357999998   99999999999987655

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.65  E-value=0.00039  Score=62.82  Aligned_cols=78  Identities=19%  Similarity=-0.014  Sum_probs=40.7

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEE--------------------CCEEEEEEEEeCCC
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCL--------------------DDVTIRFEIWDTAG   99 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~--------------------~~~~v~l~i~Dt~G   99 (373)
                      +++.++|-   |||||+|.+++.+....     |+...........                    ......++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            46788886   99999999998754322     4432221111100                    11346799999999


Q ss_pred             cccc----cccchh---hccCCcEEEEEEECCC
Q psy18160        100 QERY----HTLAPM---YYRNAQAAIIVYDITN  125 (373)
Q Consensus       100 ~e~~----~~l~~~---~~~~ad~iilv~D~~~  125 (373)
                      .-..    ..+...   .++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            5321    112222   3578999999999863

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=97.60  E-value=2.7e-06  Score=70.45  Aligned_cols=54  Identities=22%  Similarity=0.300  Sum_probs=41.6

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..+|++++|+++||||||++||+.+.+... .+|.|        ..+.    .+....+.+.|||++
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~--------~~~~----~~~~~~~~~~i~D~~   64 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--------FNVE----TVTYKNVKFNVWDVG   64 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETT--------EEEE----EEEETTEEEEEEEES
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceee--------eeEE----EeeccceeeEEecCC
Confidence            358999999999999999999998887654 46777        3332    223455888999985

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.52  E-value=0.00038  Score=61.76  Aligned_cols=75  Identities=13%  Similarity=-0.046  Sum_probs=47.4

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCE------------E---EEEEEEeCCCcccc-
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDV------------T---IRFEIWDTAGQERY-  103 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~------------~---v~l~i~Dt~G~e~~-  103 (373)
                      +++.++|=   |||||++++++......     |+.....  .+.+.+.            +   ..+++.|+||.-+- 
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~g--vv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceE--EEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            57788885   99999999998754322     4443332  2333321            1   35889999996322 


Q ss_pred             ---cccch---hhccCCcEEEEEEECC
Q psy18160        104 ---HTLAP---MYYRNAQAAIIVYDIT  124 (373)
Q Consensus       104 ---~~l~~---~~~~~ad~iilv~D~~  124 (373)
                         ..+..   ..++.+|+++.|+|+.
T Consensus        81 ~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          81 SKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             ccCCCccHHHHHHHHhccceEEEeecc
Confidence               22333   3467999999999863

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.51  E-value=5.6e-06  Score=66.73  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=29.0

Q ss_pred             EEEEEccCccccceeeEEeeeCcccccccCCcc
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG  331 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig  331 (373)
                      |++++|++++|||||+++++.+.|. .+.||++
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~   33 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWH   33 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceee
Confidence            7899999999999999999998876 4788988

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.42  E-value=2.5e-05  Score=63.16  Aligned_cols=34  Identities=26%  Similarity=0.560  Sum_probs=30.1

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcccccccCCcc
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG  331 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig  331 (373)
                      .+|++++|+++||||||+++|+.+.|...+ +|.+
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~   38 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG   38 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccee-cccc
Confidence            589999999999999999999999997644 6777

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=1.2e-05  Score=68.38  Aligned_cols=54  Identities=24%  Similarity=0.341  Sum_probs=41.9

Q ss_pred             EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      +++++|++++|||+|+++++.+.|...+ ||++        .++. .....++..+.+.+||++
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~--------~~~~-~~~~~~~~~~~~~~~d~~   55 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT--------DSSA-IYKVNNNRGNSLTLIDLP   55 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCS--------CEEE-EEECSSTTCCEEEEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCee--------EEEE-EEEEeeeeeeeeeeeecc
Confidence            5799999999999999999999887765 7888        4443 222235677889999985

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.02  E-value=4.9e-05  Score=62.37  Aligned_cols=35  Identities=26%  Similarity=0.320  Sum_probs=26.2

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCcc
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG  331 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig  331 (373)
                      ...|++++|++|||||||+++++.+.|...+ ||.+
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~   46 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLH   46 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccee-cccc
Confidence            4589999999999999999999999887654 6776

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.97  E-value=4.5e-05  Score=62.49  Aligned_cols=35  Identities=23%  Similarity=0.472  Sum_probs=29.3

Q ss_pred             cceEEEEEccCccccceeeEEeeeCcccccccCCcc
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG  331 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig  331 (373)
                      ..+|++++|.+|+|||||++|+..+++.... +|.+
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~   48 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG   48 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccc
Confidence            3589999999999999999999998887543 4555

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.60  E-value=0.004  Score=55.37  Aligned_cols=78  Identities=13%  Similarity=0.066  Sum_probs=52.0

Q ss_pred             CcEEEEEEcC---ChhHHHHHhhhCcCc--Cc----ceeeeEEEEEEEECCE---------------EEEEEEEeCCCcc
Q psy18160         46 DCMAQIWLKD---RVDCMTQIVINVVFY--PY----LFSAAFITQTVCLDDV---------------TIRFEIWDTAGQE  101 (373)
Q Consensus        46 ~~i~ivvlG~---GKTsLl~rl~~~~~~--~~----Tig~~~~~~~i~~~~~---------------~v~l~i~Dt~G~e  101 (373)
                      .-+++.++|-   |||||+|.+++....  .+    |+.....  .+.+.+.               ...+++.|++|..
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g--~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv   86 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEA--KVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   86 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEE--EEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeE--EEeccccchhhhhhcccCCceecccceeeeccccc
Confidence            3478889996   999999999976432  11    5555443  3444332               2468899999853


Q ss_pred             c----ccccchh---hccCCcEEEEEEECCC
Q psy18160        102 R----YHTLAPM---YYRNAQAAIIVYDITN  125 (373)
Q Consensus       102 ~----~~~l~~~---~~~~ad~iilv~D~~~  125 (373)
                      .    -..+...   .++.||+++.|+|+.+
T Consensus        87 ~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          87 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccccHHHHHHHhhccceeEEEEeccC
Confidence            2    2223333   3689999999999865

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.55  E-value=8.8e-05  Score=59.72  Aligned_cols=24  Identities=33%  Similarity=0.695  Sum_probs=21.6

Q ss_pred             eEEEEEccCccccceeeEEeeeCc
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQ  321 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~  321 (373)
                      +|++++|.+++|||||++++++..
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            589999999999999999998654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.00011  Score=61.79  Aligned_cols=51  Identities=16%  Similarity=0.190  Sum_probs=34.2

Q ss_pred             eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI  362 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~  362 (373)
                      ..++++|.+++|||||+++++.+.+.    ||+..        +.....+..++  ..+.+||++
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~--------~~~~~~~~~~~--~~~~l~D~~   54 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVS--------QEPLSAADYDG--SGVTLVDFP   54 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCC----CBCCC--------SSCEEETTGGG--SSCEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC----CeEEe--------cceEEEEEeCC--eEEEEEecc
Confidence            46899999999999999999987654    44442        22222232333  445778875

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.013  Score=49.71  Aligned_cols=41  Identities=7%  Similarity=0.067  Sum_probs=24.6

Q ss_pred             EEEEeCCCCCCCCcccCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHH
Q psy18160        171 ALAGNKADLPTSRRCVEYSEGEAYAEENG--LLFMETSAKTAMNVNEIF  217 (373)
Q Consensus       171 ilVgnK~Dl~~~~~~v~~~e~~~~~~~~~--~~~~evSak~~~gI~~lf  217 (373)
                      +||.||+|+.++     .+..++..+.++  .+++++| .-...++.+|
T Consensus       153 ~ivlNK~Dl~~~-----~~~~~~~l~~lNP~a~Ii~~~-~g~v~~~~ll  195 (222)
T d1nija1         153 RILLTKTDVAGE-----AEKLHERLARINARAPVYTVT-HGDIDLGLLF  195 (222)
T ss_dssp             EEEEECTTTCSC-----THHHHHHHHHHCSSSCEEECC-SSCCCGGGGS
T ss_pred             cccccccccccH-----HHHHHHHHHHHhCCCeEEEee-CCccCHHHhh
Confidence            688999999753     234555555554  5677655 2234555554

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.21  E-value=0.00035  Score=57.42  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             EEEEEccCccccceeeEEeeeCcc
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQF  322 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f  322 (373)
                      .+.++|.+++|||||++++++...
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~   26 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHP   26 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            368999999999999999986543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.20  E-value=0.0022  Score=56.45  Aligned_cols=53  Identities=11%  Similarity=0.025  Sum_probs=34.6

Q ss_pred             CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCc
Q psy18160         45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQ  100 (373)
Q Consensus        45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~  100 (373)
                      ...++++++|-   |||||+|++.+.+....  ++|.+.....+..+.+   +.+.||||.
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~~---~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKE---LELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTT---EEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCCC---eEEecCCCc
Confidence            45688999996   99999999999876665  7777665555655543   789999996

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.98  E-value=0.001  Score=53.19  Aligned_cols=25  Identities=32%  Similarity=0.440  Sum_probs=22.6

Q ss_pred             eEEEEEccCccccceeeEEeeeCcc
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQF  322 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~f  322 (373)
                      +|++++|.+++|||||++++++..+
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~   26 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREA   26 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc
Confidence            7999999999999999999987654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.68  E-value=0.0012  Score=54.27  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=20.1

Q ss_pred             EEEEEccCccccceeeEEeeeCc
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQ  321 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~  321 (373)
                      ++.++|.+++|||||++++.+..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~   25 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAK   25 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEEC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998644

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.48  E-value=0.0012  Score=53.96  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=22.4

Q ss_pred             ceEEEEEccCccccceeeEEeeeCcc
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQF  322 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~f  322 (373)
                      .-+++++|.+++|||||++++++...
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~   30 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKV   30 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCc
Confidence            34799999999999999999987643

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.0023  Score=51.93  Aligned_cols=30  Identities=20%  Similarity=0.187  Sum_probs=24.0

Q ss_pred             cccceEEEEEccCccccceeeEEeeeCccc
Q psy18160        294 KICQYKLVLLGESAVGKSSLVLRFVRGQFH  323 (373)
Q Consensus       294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~  323 (373)
                      .+..++++++|.+++|||||+++++...+.
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~   42 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSL   42 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC---
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCce
Confidence            445689999999999999999999876543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.22  E-value=0.0014  Score=53.79  Aligned_cols=25  Identities=28%  Similarity=0.494  Sum_probs=22.6

Q ss_pred             ceEEEEEccCccccceeeEEeeeCc
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQ  321 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~  321 (373)
                      .+|++++|.+++|||||++++++..
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Confidence            5899999999999999999998654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.34  E-value=0.0024  Score=51.64  Aligned_cols=24  Identities=29%  Similarity=0.574  Sum_probs=19.4

Q ss_pred             EEEEEccCccccceeeEEeeeCcc
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQF  322 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f  322 (373)
                      .++++|.+++|||||++++++..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~   25 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKK   25 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            478999999999999999986554

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.07  E-value=0.02  Score=48.54  Aligned_cols=53  Identities=9%  Similarity=-0.110  Sum_probs=30.7

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-------cee--eeEEEEEEEECCEEEEEEEEeCCCccccc
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-------LFS--AAFITQTVCLDDVTIRFEIWDTAGQERYH  104 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-------Tig--~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~  104 (373)
                      ..+++|.   |||||+|++..+.-...       ..|  .+.....+.+++.   -.++||||...+.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            4577775   99999999987633222       011  1112234455433   3588999976554

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.77  E-value=0.47  Score=37.10  Aligned_cols=20  Identities=10%  Similarity=0.145  Sum_probs=17.2

Q ss_pred             EEEEEEcC---ChhHHHHHhhhC
Q psy18160         48 MAQIWLKD---RVDCMTQIVINV   67 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~   67 (373)
                      +|++++|+   |||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            47888887   999999999874

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.31  E-value=0.016  Score=46.56  Aligned_cols=24  Identities=25%  Similarity=0.528  Sum_probs=20.9

Q ss_pred             EEEEEccCccccceeeEEeeeCcc
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQF  322 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f  322 (373)
                      .++++|.++||||||++++++..+
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~   30 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKI   30 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            578999999999999999986543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.28  E-value=0.01  Score=55.08  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=21.8

Q ss_pred             eEEEEEccCccccceeeEEeeeCc
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQ  321 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~  321 (373)
                      +++.++|.+|+|||||+|.+++..
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            899999999999999999998644

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=91.47  E-value=0.012  Score=48.31  Aligned_cols=24  Identities=33%  Similarity=0.530  Sum_probs=20.8

Q ss_pred             eEEEEEccCccccceeeEEeeeCc
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRGQ  321 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~~  321 (373)
                      .+++++|.+|+|||||++++++..
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCC
Confidence            379999999999999999998654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.11  E-value=0.055  Score=45.87  Aligned_cols=52  Identities=6%  Similarity=-0.043  Sum_probs=27.9

Q ss_pred             EEEEEcC---ChhHHHHHhhhCcCcCc-------cee--eeEEEEEEEECCEEEEEEEEeCCCccccc
Q psy18160         49 AQIWLKD---RVDCMTQIVINVVFYPY-------LFS--AAFITQTVCLDDVTIRFEIWDTAGQERYH  104 (373)
Q Consensus        49 ~ivvlG~---GKTsLl~rl~~~~~~~~-------Tig--~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~  104 (373)
                      ..+++|.   |||||+|++..+.....       ..|  .+.....+..+|.    .|+||||...+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg----~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG----LVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTE----EEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC----EEEECCcccccc
Confidence            4567786   99999999997632221       011  0111122334553    377999986654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.93  E-value=0.016  Score=46.67  Aligned_cols=25  Identities=32%  Similarity=0.620  Sum_probs=21.2

Q ss_pred             EEEEEccCccccceeeEEeeeCccc
Q psy18160        299 KLVLLGESAVGKSSLVLRFVRGQFH  323 (373)
Q Consensus       299 k~~~iG~~~vGks~l~~~~~~~~f~  323 (373)
                      .++++|.+++|||||++++++..+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~   26 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR   26 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce
Confidence            3689999999999999999876543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.62  E-value=0.043  Score=47.32  Aligned_cols=25  Identities=28%  Similarity=0.514  Sum_probs=22.5

Q ss_pred             ceEEEEEccCccccceeeEEeeeCc
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRGQ  321 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~~  321 (373)
                      .++++++|.+|+||||++|.+++..
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCCC
Confidence            5899999999999999999998654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=90.45  E-value=0.037  Score=44.71  Aligned_cols=25  Identities=20%  Similarity=0.215  Sum_probs=21.9

Q ss_pred             cceEEEEEccCccccceeeEEeeeC
Q psy18160        296 CQYKLVLLGESAVGKSSLVLRFVRG  320 (373)
Q Consensus       296 ~~~k~~~iG~~~vGks~l~~~~~~~  320 (373)
                      ..+++.++|.+++|||||+++++..
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHh
Confidence            4578999999999999999999853

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.12  E-value=0.13  Score=44.80  Aligned_cols=53  Identities=6%  Similarity=-0.184  Sum_probs=34.3

Q ss_pred             EEEEEEcC---ChhHHHHHhhhCcC--cCc------ceeeeEEEEEEEECCEEEEEEEEeCCCcc
Q psy18160         48 MAQIWLKD---RVDCMTQIVINVVF--YPY------LFSAAFITQTVCLDDVTIRFEIWDTAGQE  101 (373)
Q Consensus        48 i~ivvlG~---GKTsLl~rl~~~~~--~~~------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e  101 (373)
                      .-|.++|.   |||+|+|++++..+  ...      |.|+-.....+. ++....+-++||.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~-~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHP-KKPGHILVLLDTEGLG   96 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECS-SSTTCEEEEEEECCBC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeecc-CCCCceEEEEeccccc
Confidence            34555555   99999999998763  222      777654433332 3444567889998864

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=89.28  E-value=0.18  Score=41.96  Aligned_cols=91  Identities=18%  Similarity=0.148  Sum_probs=55.4

Q ss_pred             EEEEEEeCCCccccccc---c---hhh--ccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhh
Q psy18160         90 IRFEIWDTAGQERYHTL---A---PMY--YRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKEL  160 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~l---~---~~~--~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~  160 (373)
                      ..+.++||+|...+...   .   ..+  ....+-+++|.|.+... ..+.+...+   ..                   
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~---~~-------------------  152 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFN---QA-------------------  152 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH---HH-------------------
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhh---cc-------------------
Confidence            35789999997544321   1   111  12456788999886543 333333222   11                   


Q ss_pred             hhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q psy18160        161 QRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNE  215 (373)
Q Consensus       161 ~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~  215 (373)
                           .++ --++.||.|-.     ...-.+..++...++|+..+|  +|++|++
T Consensus       153 -----~~~-~~lI~TKlDet-----~~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         153 -----SKI-GTIIITKMDGT-----AKGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             -----CTT-EEEEEECTTSC-----SCHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             -----cCc-ceEEEecccCC-----CcccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence                 122 24679999953     346677788888999987777  5777755

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.99  E-value=0.053  Score=43.11  Aligned_cols=22  Identities=41%  Similarity=0.765  Sum_probs=18.7

Q ss_pred             eEEEEEccCccccceeeEEeee
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVR  319 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~  319 (373)
                      +|++++|++|+|||||+..++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            5899999999999999866553

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=87.55  E-value=0.054  Score=45.21  Aligned_cols=92  Identities=11%  Similarity=0.050  Sum_probs=54.3

Q ss_pred             EEEEEEeCCCccccccc----chhh---c-----cCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchh
Q psy18160         90 IRFEIWDTAGQERYHTL----APMY---Y-----RNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSW  156 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~l----~~~~---~-----~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~  156 (373)
                      +.+.|+||+|...+...    ...+   .     ...+-.++|.|.+... ....+..++..+.                
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~----------------  152 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG----------------  152 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC----------------
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccC----------------
Confidence            35789999996443321    1111   1     1346788999986543 4444444443321                


Q ss_pred             HHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q psy18160        157 VKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEI  216 (373)
Q Consensus       157 ~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~l  216 (373)
                                  +--++.||.|-..     ..-.+..++...++|+..++.  |++.+++
T Consensus       153 ------------~~~lI~TKlDet~-----~~G~~l~~~~~~~~Pi~~i~~--Gq~p~Dl  193 (207)
T d1okkd2         153 ------------LTGVIVTKLDGTA-----KGGVLIPIVRTLKVPIKFVGV--GEGPDDL  193 (207)
T ss_dssp             ------------CSEEEEECTTSSC-----CCTTHHHHHHHHCCCEEEEEC--SSSTTCE
T ss_pred             ------------CceEEEeccCCCC-----CccHHHHHHHHHCCCEEEEeC--CCChHhC
Confidence                        1246899999533     234456677888999877773  5555543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=86.87  E-value=0.12  Score=43.16  Aligned_cols=91  Identities=15%  Similarity=0.161  Sum_probs=54.1

Q ss_pred             EEEEEEeCCCcccccc-----cc--hhhcc-----CCcEEEEEEECCCH-hhHHHHHHHHHHHHhhCCCCCCcccccchh
Q psy18160         90 IRFEIWDTAGQERYHT-----LA--PMYYR-----NAQAAIIVYDITNQ-DTFGRAKSWVKELQRMAPPNIDTFGRAKSW  156 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~-----l~--~~~~~-----~ad~iilv~D~~~~-~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~  156 (373)
                      +.+.|+||+|......     +.  ....+     ..+-.++|.|.+.. +....+..++..+                 
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-----------------  154 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-----------------  154 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-----------------
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-----------------
Confidence            3578999999532221     10  11122     24678899998653 3444444333221                 


Q ss_pred             HHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q psy18160        157 VKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNE  215 (373)
Q Consensus       157 ~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~  215 (373)
                                 -+--++.||.|-..     ..-.+...+...++|+..++  +|++|++
T Consensus       155 -----------~~~~lIlTKlDe~~-----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         155 -----------GLTGITLTKLDGTA-----KGGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             -----------CCCEEEEECCTTCT-----TTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             -----------CCceEEEeecCCCC-----CccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence                       12357889999533     24556777888899988887  6777754

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=86.73  E-value=1.4  Score=36.22  Aligned_cols=92  Identities=18%  Similarity=0.137  Sum_probs=54.0

Q ss_pred             EEEEEEeCCCccccccc----chhh---cc-----CCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchh
Q psy18160         90 IRFEIWDTAGQERYHTL----APMY---YR-----NAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSW  156 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~l----~~~~---~~-----~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~  156 (373)
                      +.+.|+||+|...+...    ...+   ..     ..+-.++|.|.+... .+..+.+.+..+                 
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-----------------  156 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV-----------------  156 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS-----------------
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc-----------------
Confidence            35789999996433221    1111   11     146788999986543 333333332221                 


Q ss_pred             HHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q psy18160        157 VKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEI  216 (373)
Q Consensus       157 ~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~l  216 (373)
                                 -+--++.+|.|-..     ..-.+...+...+.|+..++  +|++|+++
T Consensus       157 -----------~~~~lI~TKlDe~~-----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         157 -----------NVTGIILTKLDGTA-----KGGITLAIARELGIPIKFIG--VGEKAEDL  198 (213)
T ss_dssp             -----------CCCEEEEECGGGCS-----CTTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             -----------CCceEEEecccCCC-----cccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence                       12357889999532     34456777888899988777  57777553

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.57  E-value=0.073  Score=47.09  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=20.0

Q ss_pred             eEEEEEccCccccceeeEEeeeC
Q psy18160        298 YKLVLLGESAVGKSSLVLRFVRG  320 (373)
Q Consensus       298 ~k~~~iG~~~vGks~l~~~~~~~  320 (373)
                      +|+.++|-++||||||++.+...
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCC
Confidence            57899999999999999998753

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=86.05  E-value=0.057  Score=47.52  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=21.7

Q ss_pred             ceEEEEEccCccccceeeEEeeeC
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRG  320 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~  320 (373)
                      ++|+.++|-++||||||++.++..
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCC
Confidence            489999999999999999999854

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=85.48  E-value=0.64  Score=38.27  Aligned_cols=91  Identities=13%  Similarity=0.096  Sum_probs=50.8

Q ss_pred             EEEEEEeCCCcccccccc----hhh--ccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhh
Q psy18160         90 IRFEIWDTAGQERYHTLA----PMY--YRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQR  162 (373)
Q Consensus        90 v~l~i~Dt~G~e~~~~l~----~~~--~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      +.+.++||+|...+....    ..+  ..+.+-+++|.|.+... ..+.+..+++.+.                      
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~----------------------  150 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG----------------------  150 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC----------------------
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC----------------------
Confidence            357899999975443211    111  23568889999986554 3333333322210                      


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q psy18160        163 MAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNE  215 (373)
Q Consensus       163 ~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~  215 (373)
                            +-=++.+|.|-.     ...-.+..++...+.|+..++.  |+..++
T Consensus       151 ------~~~~I~TKlDe~-----~~~G~~l~~~~~~~~Pi~~i~~--Gq~ped  190 (207)
T d1ls1a2         151 ------VTGLVLTKLDGD-----ARGGAALSARHVTGKPIYFAGV--SEKPEG  190 (207)
T ss_dssp             ------CCEEEEECGGGC-----SSCHHHHHHHHHHCCCEEEEC--------C
T ss_pred             ------CCeeEEeecCcc-----ccchHHHHHHHHHCCCEEEEeC--CCChhh
Confidence                  123788999943     2345667788888998877763  444443

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=83.07  E-value=0.062  Score=46.76  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=21.1

Q ss_pred             ceEEEEEccCccccceeeEEeeeC
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVRG  320 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~~  320 (373)
                      .+|+-++|-++||||||++.+...
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCC
Confidence            379999999999999999988754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=83.04  E-value=0.17  Score=39.68  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=19.4

Q ss_pred             ccceEEEEEccCccccceeeEEee
Q psy18160        295 ICQYKLVLLGESAVGKSSLVLRFV  318 (373)
Q Consensus       295 ~~~~k~~~iG~~~vGks~l~~~~~  318 (373)
                      +..+++++.|.+|+||||+...+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La   26 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIA   26 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHH
Confidence            345789999999999999875543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=82.54  E-value=0.27  Score=38.45  Aligned_cols=33  Identities=6%  Similarity=0.137  Sum_probs=22.5

Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160        191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK  226 (373)
Q Consensus       191 ~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~  226 (373)
                      ..++.+.++.+++.+.+   .++++.+..+.+.+.+
T Consensus       148 ~~~~l~~~~~~~i~i~~---~~~~e~~~~i~~~I~~  180 (192)
T d1lw7a2         148 LKKLLDKYKVPYIEIES---PSYLDRYNQVKAVIEK  180 (192)
T ss_dssp             HHHHHHGGGCCCEEEEC---SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCEEEeCC---CCHHHHHHHHHHHHHH
Confidence            44556667888888764   4677887777766643

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=82.15  E-value=0.083  Score=41.74  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=19.3

Q ss_pred             ceEEEEEccCccccceeeEEeee
Q psy18160        297 QYKLVLLGESAVGKSSLVLRFVR  319 (373)
Q Consensus       297 ~~k~~~iG~~~vGks~l~~~~~~  319 (373)
                      .-+|++.|.+|+|||||+.++..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999887653