Psyllid ID: psy1864

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIYYY
Secondary Structure (PSIPRED)
ccEEEEEEcccccccccccccccccEEEEccccccccccccEEEEcccccEEEEEEEccEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEcEEEEEEEEEEEEccccccccccccccccEEEEEEEcccccccEEEEEcccccEEEcccEEcccEEEEEEEEEEEEEEEEccEEEEEEEEEEEEEcccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEccccccccccccccEEEEcccEEcccccccEEEEcccccHEEEEEcccHHHHHHHHcccccccccccccHHHHHHcccccEEEEcccccEEEEccccccEEEEccccEEEEEccccEEEEEEEEEEEEccccccccccccccccEEEEEEcccccccEEEEEcccccEEEEcccEccEEEEEEEEEEEEEEEEccccEEEEEEEEEEEEHHEEEEEEEEEc
Coil and Loop (DISEMBL)
EYSVQLTFREQWLDERLkyndydgriKYLTLTEasrvwmpdlffsnekeghfhniimpnvyirihpqgsvlysisdldnmrqcevhmtvpqtprknccrswlakfptrskridvisRITFPLVFALFNLTYWSTIsltlscpmnlklypldrqscslkmasygwttDDLIFLWkegdpvqvvknlhlprftlEKFYTDYCnsktntgaysclkvDLLFKREFSYYLIQIYYY
Flexible Loop (DISEMBL)
EYSVQLTFREQWLDerlkyndydgRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDNMRQCEVHmtvpqtprknccRSWLAkfptrskridviSRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKNLHLPRFTLEKFYTDYCNSktntgaysclkvdllfKREFSYYLIQIYYY
Low Complexity Region (SEG)
EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIYYY
Disordered region (IsUnstruct)
****QLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIYY*
Disordered Region (DISOPRED)
EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIYYY
Disordered Region (DISEMBL)
EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIYYY
Disordered Region (DISPRO)
EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIYYY
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIYYY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q94900	456	Glutamate-gated chloride	yes	N/A	0.737	0.375	0.560	3e-61
Q17328	434	Glutamate-gated chloride	yes	N/A	0.737	0.394	0.355	3e-31
P57695	457	Glycine receptor subunit	yes	N/A	0.737	0.374	0.337	4e-30
P23415	457	Glycine receptor subunit	yes	N/A	0.737	0.374	0.337	5e-30
Q64018	457	Glycine receptor subunit	yes	N/A	0.737	0.374	0.337	5e-30
P07727	457	Glycine receptor subunit	yes	N/A	0.737	0.374	0.337	5e-30
O93430	444	Glycine receptor subunit	yes	N/A	0.737	0.385	0.324	3e-28
P91730	432	Glutamate-gated chloride	N/A	N/A	0.737	0.395	0.360	4e-28
Q7TNC8	452	Glycine receptor subunit	no	N/A	0.737	0.378	0.316	2e-22
P23416	452	Glycine receptor subunit	no	N/A	0.737	0.378	0.316	2e-22

>sp|Q94900|GLUCL_DROME Glutamate-gated chloride channel OS=Drosophila melanogaster GN=GluClalpha PE=1 SV=2

 Score =  234 bits (598), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 129/230 (56%), Positives = 146/230 (63%), Gaps = 59/230 (25%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           EYSVQLTFREQW DERLK++D  GR+KYLTLTEA+RVW                  MP++
Sbjct: 82  EYSVQLTFREQWTDERLKFDDIQGRLKYLTLTEANRVW------------------MPDL 123

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
           +     +G          N+    V++ +               FP  S           
Sbjct: 124 FFSNEKEG-------HFHNIIMPNVYIRI---------------FPNGS----------- 150

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
                   + Y   ISLTL+CPMNLKLYPLDRQ CSL+MASYGWTT+DL+FLWKEGDPVQ
Sbjct: 151 --------VLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGDPVQ 202

Query: 181 VVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           VVKNLHLPRFTLEKF TDYCNSKTNTG YSCLKVDLLFKREFSYYLIQIY
Sbjct: 203 VVKNLHLPRFTLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIY 252

Glutamate gated chloride channel that is dual gated by glutamate and avermectin.
Drosophila melanogaster (taxid: 7227)

>sp|Q17328|GLUCB_CAEEL Glutamate-gated chloride channel subunit beta OS=Caenorhabditis elegans GN=glc-2 PE=1 SV=1

 Score =  135 bits (340), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/236 (35%), Positives = 116/236 (49%), Gaps = 65/236 (27%)

Query: 1   EYSVQLTFREQWLDERLKYND--YDGRIKYLTLTEASR-VWMPDLFFSNEKEGHFHNIIM 57
           EYS+QLTFREQW+D RL Y +  +     +LT+    + +W+PD FF  EK  H H I  
Sbjct: 77  EYSIQLTFREQWIDPRLAYENLGFYNPPAFLTVPHVKKSLWIPDTFFPTEKAAHRHLI-- 134

Query: 58  PNVYIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISR 117
                             D++NM                                     
Sbjct: 135 ------------------DMENM------------------------------------- 139

Query: 118 ITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGD 177
             F  ++    + Y S ISLT SCPM L+LYPLD QSC+  + SY  T +D+++ W    
Sbjct: 140 --FLRIYPDGKILYSSRISLTSSCPMRLQLYPLDYQSCNFDLVSYAHTMNDIMYEWDPST 197

Query: 178 PVQVVKNL--HLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           PVQ+   +   LP F L+ + T+  C S TNTG+Y CL++ LLFKR+FSYYL+Q+Y
Sbjct: 198 PVQLKPGVGSDLPNFILKNYTTNADCTSHTNTGSYGCLRMQLLFKRQFSYYLVQLY 253

Glutamate gated chloride channel that is dual gated by glutamate and avermectin.

Caenorhabditis elegans (taxid: 6239)

>sp|P57695|GLRA1_BOVIN Glycine receptor subunit alpha-1 OS=Bos taurus GN=GLRA1 PE=2 SV=1

 Score =  131 bits (329), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 108/231 (46%), Gaps = 60/231 (25%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           +Y V +  R+QW D RL YN+Y      L  +    +W PDLFF+NEK  HFH I   N 
Sbjct: 85  DYRVNIFLRQQWNDPRLAYNEYPDDSLDLDPSMLDSIWKPDLFFANEKGAHFHEITTDNK 144

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
            +RI   G+VLYSI                                          RIT 
Sbjct: 145 LLRISRNGNVLYSI------------------------------------------RITL 162

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
            L                 +CPM+LK +P+D Q+C +++ S+G+T +DLIF W+E   VQ
Sbjct: 163 TL-----------------ACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQEQGAVQ 205

Query: 181 VVKNLHLPRFTL-EKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           V   L LP+F L E+    YC    NTG ++C++     +R+  YYLIQ+Y
Sbjct: 206 VADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMY 256

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Bos taurus (taxid: 9913)

>sp|P23415|GLRA1_HUMAN Glycine receptor subunit alpha-1 OS=Homo sapiens GN=GLRA1 PE=1 SV=2

 Score =  131 bits (329), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 108/231 (46%), Gaps = 60/231 (25%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           +Y V +  R+QW D RL YN+Y      L  +    +W PDLFF+NEK  HFH I   N 
Sbjct: 85  DYRVNIFLRQQWNDPRLAYNEYPDDSLDLDPSMLDSIWKPDLFFANEKGAHFHEITTDNK 144

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
            +RI   G+VLYSI                                          RIT 
Sbjct: 145 LLRISRNGNVLYSI------------------------------------------RITL 162

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
            L                 +CPM+LK +P+D Q+C +++ S+G+T +DLIF W+E   VQ
Sbjct: 163 TL-----------------ACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQEQGAVQ 205

Query: 181 VVKNLHLPRFTL-EKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           V   L LP+F L E+    YC    NTG ++C++     +R+  YYLIQ+Y
Sbjct: 206 VADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMY 256

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Homo sapiens (taxid: 9606)

>sp|Q64018|GLRA1_MOUSE Glycine receptor subunit alpha-1 OS=Mus musculus GN=Glra1 PE=1 SV=2

 Score =  131 bits (329), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 108/231 (46%), Gaps = 60/231 (25%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           +Y V +  R+QW D RL YN+Y      L  +    +W PDLFF+NEK  HFH I   N 
Sbjct: 85  DYRVNIFLRQQWNDPRLAYNEYPDDSLDLDPSMLDSIWKPDLFFANEKGAHFHEITTDNK 144

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
            +RI   G+VLYSI                                          RIT 
Sbjct: 145 LLRISRNGNVLYSI------------------------------------------RITL 162

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
            L                 +CPM+LK +P+D Q+C +++ S+G+T +DLIF W+E   VQ
Sbjct: 163 TL-----------------ACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQEQGAVQ 205

Query: 181 VVKNLHLPRFTL-EKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           V   L LP+F L E+    YC    NTG ++C++     +R+  YYLIQ+Y
Sbjct: 206 VADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMY 256

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Mus musculus (taxid: 10090)

>sp|P07727|GLRA1_RAT Glycine receptor subunit alpha-1 OS=Rattus norvegicus GN=Glra1 PE=1 SV=4

 Score =  131 bits (329), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 108/231 (46%), Gaps = 60/231 (25%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           +Y V +  R+QW D RL YN+Y      L  +    +W PDLFF+NEK  HFH I   N 
Sbjct: 85  DYRVNIFLRQQWNDPRLAYNEYPDDSLDLDPSMLDSIWKPDLFFANEKGAHFHEITTDNK 144

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
            +RI   G+VLYSI                                          RIT 
Sbjct: 145 LLRISRNGNVLYSI------------------------------------------RITL 162

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
            L                 +CPM+LK +P+D Q+C +++ S+G+T +DLIF W+E   VQ
Sbjct: 163 TL-----------------ACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQEQGAVQ 205

Query: 181 VVKNLHLPRFTL-EKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           V   L LP+F L E+    YC    NTG ++C++     +R+  YYLIQ+Y
Sbjct: 206 VADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMY 256

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Rattus norvegicus (taxid: 10116)

>sp|O93430|GLRA1_DANRE Glycine receptor subunit alphaZ1 OS=Danio rerio GN=glra1 PE=2 SV=1

 Score =  125 bits (313), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 107/231 (46%), Gaps = 60/231 (25%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           +Y V +  R+QW D RL Y++Y      L  +    +W PDLFF+NEK  +FH +   N 
Sbjct: 81  DYRVNIFLRQQWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNK 140

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
            +RI   G+VLYSI                                          RIT 
Sbjct: 141 LLRISKNGNVLYSI------------------------------------------RITL 158

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
            L                 +CPM+LK +P+D Q+C +++ S+G+T +DLIF W E   VQ
Sbjct: 159 VL-----------------ACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWDEKGAVQ 201

Query: 181 VVKNLHLPRFTL-EKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           V   L LP+F L E+    YC    NTG ++C++     +R+  YYLIQ+Y
Sbjct: 202 VADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMY 252

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Danio rerio (taxid: 7955)

>sp|P91730|GLUCB_HAECO Glutamate-gated chloride channel subunit beta OS=Haemonchus contortus PE=2 SV=1

 Score =  124 bits (312), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/236 (36%), Positives = 107/236 (45%), Gaps = 65/236 (27%)

Query: 1   EYSVQLTFREQWLDERLKYN--DYDGRIKYLTLTE-ASRVWMPDLFFSNEKEGHFHNIIM 57
           EYS+QLTFREQWLD RL Y    Y    K+LT+    S +W+PD FF  EK  H H I  
Sbjct: 80  EYSMQLTFREQWLDSRLAYAHLGYHNPPKFLTVPHIKSNLWIPDTFFPTEKAAHRHLI-- 137

Query: 58  PNVYIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISR 117
                             D DNM                                     
Sbjct: 138 ------------------DTDNM------------------------------------- 142

Query: 118 ITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGD 177
             F  +     + Y S IS+T SC M L+LYPLD Q C   + SY  T  D+++ W    
Sbjct: 143 --FLRIHPDGKVLYSSRISITSSCHMQLQLYPLDLQFCDFDLVSYAHTMKDIVYEWDPLA 200

Query: 178 PVQVVKNLH--LPRFTLEKFYT-DYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           PVQ+   +   LP F L    T D C S TNTG+Y+CL++ L  KR+FSYYL+Q+Y
Sbjct: 201 PVQLKPGVGSDLPNFQLTNITTNDDCTSHTNTGSYACLRMQLTLKRQFSYYLVQLY 256

Glutamate gated chloride channel that is dual gated by glutamate and avermectin.

Haemonchus contortus (taxid: 6289)

>sp|Q7TNC8|GLRA2_MOUSE Glycine receptor subunit alpha-2 OS=Mus musculus GN=Glra2 PE=2 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 104/231 (45%), Gaps = 60/231 (25%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           +Y V +  R+QW D RL Y++Y      L  +    +W PDLFF+NEK  +FH++   N 
Sbjct: 91  DYRVNIFLRQQWNDSRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHDVTTDNK 150

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
            +RI   G VLYSI          + +T+        C   L  FP     +DV      
Sbjct: 151 LLRISKNGKVLYSI---------RLTLTL-------SCPMDLKNFP-----MDV------ 183

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
                              +C M L+              S+G+T +DLIF W    PVQ
Sbjct: 184 ------------------QTCTMQLE--------------SFGYTMNDLIFEWLSDGPVQ 211

Query: 181 VVKNLHLPRFTL-EKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           V + L LP+F L E+    YC    NTG ++C++V    +R+  YYLIQ+Y
Sbjct: 212 VAEGLTLPQFILKEEKELGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMY 262

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Mus musculus (taxid: 10090)

>sp|P23416|GLRA2_HUMAN Glycine receptor subunit alpha-2 OS=Homo sapiens GN=GLRA2 PE=2 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 104/231 (45%), Gaps = 60/231 (25%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           +Y V +  R+QW D RL Y++Y      L  +    +W PDLFF+NEK  +FH++   N 
Sbjct: 91  DYRVNIFLRQQWNDSRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHDVTTDNK 150

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
            +RI   G VLYSI          + +T+        C   L  FP     +DV      
Sbjct: 151 LLRISKNGKVLYSI---------RLTLTL-------SCPMDLKNFP-----MDV------ 183

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
                              +C M L+              S+G+T +DLIF W    PVQ
Sbjct: 184 ------------------QTCTMQLE--------------SFGYTMNDLIFEWLSDGPVQ 211

Query: 181 VVKNLHLPRFTL-EKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           V + L LP+F L E+    YC    NTG ++C++V    +R+  YYLIQ+Y
Sbjct: 212 VAEGLTLPQFILKEEKELGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMY 262

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
241714534	448	DrosGluCl, putative [Ixodes scapularis]	0.767	0.397	0.573	1e-67
166851816	447	glutamate-gated chloride channel isoform	0.737	0.382	0.573	2e-62
166851818	447	glutamate-gated chloride channel isoform	0.737	0.382	0.573	3e-62
158631173	447	glutamate-gated chloride channel isoform	0.737	0.382	0.573	3e-62
350422018	452	PREDICTED: glutamate-gated chloride chan	0.737	0.378	0.582	3e-62
350422015	452	PREDICTED: glutamate-gated chloride chan	0.737	0.378	0.582	3e-62
340724890	452	PREDICTED: glutamate-gated chloride chan	0.737	0.378	0.582	3e-62
385843184	447	GluCl alpha subunit [Phyllotreta striola	0.737	0.382	0.578	5e-62
332294196	452	glutamate-gated chloride channel [Laodel	0.737	0.378	0.569	8e-62
110555514	447	glutamate-gated chloride channel [Apis m	0.737	0.382	0.573	9e-62

>gi|241714534|ref|XP_002413510.1| DrosGluCl, putative [Ixodes scapularis] gi|215507324|gb|EEC16818.1| DrosGluCl, putative [Ixodes scapularis]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 132/230 (57%), Positives = 152/230 (66%), Gaps = 52/230 (22%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           EY+VQ+TFREQW DERL+Y+D  G+++YLTLTE  ++W PDLFFSNEKEGHFHNIIMPNV
Sbjct: 80  EYTVQMTFREQWRDERLQYDDLGGQVRYLTLTEPDKLWKPDLFFSNEKEGHFHNIIMPNV 139

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
            +RIHP G                             C + L  F  R            
Sbjct: 140 LLRIHPNGD--------------------------GVCLNDLPSFLFR------------ 161

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
                         ISL LSCPMNLK YPLD+Q CS+ M SYG+TT+DL+FLWKEGDPVQ
Sbjct: 162 --------------ISLVLSCPMNLKFYPLDKQICSILMVSYGYTTEDLVFLWKEGDPVQ 207

Query: 181 VVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           V KNLHLPRFTLE+F TDYC S+TNTG YSCL+VDL+FKREFSYYLIQIY
Sbjct: 208 VTKNLHLPRFTLERFQTDYCTSRTNTGDYSCLRVDLVFKREFSYYLIQIY 257

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|166851816|ref|NP_001107775.1| glutamate-gated chloride channel isoform a precursor [Tribolium castaneum] gi|156447613|gb|ABU63599.1| glutamate-gated chloride channel splice variant 3a [Tribolium castaneum] gi|270015140|gb|EFA11588.1| GluClalpha [Tribolium castaneum]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 132/230 (57%), Positives = 148/230 (64%), Gaps = 59/230 (25%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           EYSVQLTFREQWLDERLK+ND+ GR+KYLTLTEASRVW                  MP++
Sbjct: 79  EYSVQLTFREQWLDERLKFNDFGGRLKYLTLTEASRVW------------------MPDL 120

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
           +                 N ++   H                          ++I    +
Sbjct: 121 F---------------FSNEKEGHFH--------------------------NIIMPNVY 139

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
             +F   ++ Y   ISLTLSCPMNLKLYPLDRQ CSL+MASYGWTTDDL+FLWKEGDPVQ
Sbjct: 140 IRIFPYGSVLYSIRISLTLSCPMNLKLYPLDRQICSLRMASYGWTTDDLVFLWKEGDPVQ 199

Query: 181 VVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           VVKNLHLPRFTLEKF TDYCNSKTNTG YSCLKVDLLFKREFSYYLIQIY
Sbjct: 200 VVKNLHLPRFTLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIY 249

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|166851818|ref|NP_001107776.1| glutamate-gated chloride channel isoform b precursor [Tribolium castaneum] gi|156447615|gb|ABU63600.1| glutamate-gated chloride channel splice variant 3b [Tribolium castaneum]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 132/230 (57%), Positives = 148/230 (64%), Gaps = 59/230 (25%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           EYSVQLTFREQWLDERLK+ND+ GR+KYLTLTEASRVW                  MP++
Sbjct: 79  EYSVQLTFREQWLDERLKFNDFGGRLKYLTLTEASRVW------------------MPDL 120

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
           +                 N ++   H                          ++I    +
Sbjct: 121 F---------------FSNEKEGHFH--------------------------NIIMPNVY 139

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
             +F   ++ Y   ISLTLSCPMNLKLYPLDRQ CSL+MASYGWTTDDL+FLWKEGDPVQ
Sbjct: 140 IRIFPYGSVLYSIRISLTLSCPMNLKLYPLDRQICSLRMASYGWTTDDLVFLWKEGDPVQ 199

Query: 181 VVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           VVKNLHLPRFTLEKF TDYCNSKTNTG YSCLKVDLLFKREFSYYLIQIY
Sbjct: 200 VVKNLHLPRFTLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIY 249

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158631173|ref|NP_001103244.1| glutamate-gated chloride channel isoform c precursor [Tribolium castaneum] gi|156447617|gb|ABU63601.1| glutamate-gated chloride channel splice variant 3c [Tribolium castaneum]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 132/230 (57%), Positives = 148/230 (64%), Gaps = 59/230 (25%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           EYSVQLTFREQWLDERLK+ND+ GR+KYLTLTEASRVW                  MP++
Sbjct: 79  EYSVQLTFREQWLDERLKFNDFGGRLKYLTLTEASRVW------------------MPDL 120

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
           +                 N ++   H                          ++I    +
Sbjct: 121 F---------------FSNEKEGHFH--------------------------NIIMPNVY 139

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
             +F   ++ Y   ISLTLSCPMNLKLYPLDRQ CSL+MASYGWTTDDL+FLWKEGDPVQ
Sbjct: 140 IRIFPYGSVLYSIRISLTLSCPMNLKLYPLDRQICSLRMASYGWTTDDLVFLWKEGDPVQ 199

Query: 181 VVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           VVKNLHLPRFTLEKF TDYCNSKTNTG YSCLKVDLLFKREFSYYLIQIY
Sbjct: 200 VVKNLHLPRFTLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIY 249

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422018|ref|XP_003493030.1| PREDICTED: glutamate-gated chloride channel-like isoform 2 [Bombus impatiens]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 134/230 (58%), Positives = 151/230 (65%), Gaps = 59/230 (25%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           EYSVQLTFREQWLDERL+++D+ GR+KYLTLT+ASRVWM                  P++
Sbjct: 84  EYSVQLTFREQWLDERLRFSDFKGRLKYLTLTDASRVWM------------------PDL 125

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
           +                 N ++   H  +                P    RI       F
Sbjct: 126 F---------------FSNEKEGHFHNII---------------MPNVYIRI-------F 148

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
           P  F L+++     ISLTLSCPMNLKLYPLDRQ CSL+MASYGWTTDDL+FLWKEGDPVQ
Sbjct: 149 PNGFVLYSIR----ISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDLVFLWKEGDPVQ 204

Query: 181 VVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           VVKNLHLPRFTLEKFYTDYCNSKTNTG YSCLKVDLLFKREFSYYLIQIY
Sbjct: 205 VVKNLHLPRFTLEKFYTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIY 254

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422015|ref|XP_003493029.1| PREDICTED: glutamate-gated chloride channel-like isoform 1 [Bombus impatiens]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 134/230 (58%), Positives = 151/230 (65%), Gaps = 59/230 (25%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           EYSVQLTFREQWLDERL+++D+ GR+KYLTLT+ASRVWM                  P++
Sbjct: 84  EYSVQLTFREQWLDERLRFSDFKGRLKYLTLTDASRVWM------------------PDL 125

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
           +                 N ++   H  +                P    RI       F
Sbjct: 126 F---------------FSNEKEGHFHNII---------------MPNVYIRI-------F 148

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
           P  F L+++     ISLTLSCPMNLKLYPLDRQ CSL+MASYGWTTDDL+FLWKEGDPVQ
Sbjct: 149 PNGFVLYSIR----ISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDLVFLWKEGDPVQ 204

Query: 181 VVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           VVKNLHLPRFTLEKFYTDYCNSKTNTG YSCLKVDLLFKREFSYYLIQIY
Sbjct: 205 VVKNLHLPRFTLEKFYTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIY 254

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724890|ref|XP_003400811.1| PREDICTED: glutamate-gated chloride channel-like [Bombus terrestris]

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 134/230 (58%), Positives = 151/230 (65%), Gaps = 59/230 (25%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           EYSVQLTFREQWLDERL+++D+ GR+KYLTLT+ASRVWM                  P++
Sbjct: 84  EYSVQLTFREQWLDERLRFSDFKGRLKYLTLTDASRVWM------------------PDL 125

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
           +                 N ++   H  +                P    RI       F
Sbjct: 126 F---------------FSNEKEGHFHNII---------------MPNVYIRI-------F 148

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
           P  F L+++     ISLTLSCPMNLKLYPLDRQ CSL+MASYGWTTDDL+FLWKEGDPVQ
Sbjct: 149 PNGFVLYSIR----ISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDLVFLWKEGDPVQ 204

Query: 181 VVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           VVKNLHLPRFTLEKFYTDYCNSKTNTG YSCLKVDLLFKREFSYYLIQIY
Sbjct: 205 VVKNLHLPRFTLEKFYTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIY 254

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|385843184|gb|AFI80889.1| GluCl alpha subunit [Phyllotreta striolata]

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 133/230 (57%), Positives = 149/230 (64%), Gaps = 59/230 (25%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           EYSVQLTFREQWLDERLK+ND+ GR+KYLTLTEA+RVW                  MP++
Sbjct: 79  EYSVQLTFREQWLDERLKFNDFGGRLKYLTLTEANRVW------------------MPDL 120

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
           +     +G          N+    V++ +               FPT S           
Sbjct: 121 FFSNEKEGH-------FHNIIMPNVYIRI---------------FPTGS----------- 147

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
                   + Y   ISLTLSCPMNLKLYPLDRQ CSL+MASYGWTTDDL+FLWK+GDPVQ
Sbjct: 148 --------VLYSIRISLTLSCPMNLKLYPLDRQICSLRMASYGWTTDDLVFLWKQGDPVQ 199

Query: 181 VVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           VVKNLHLPRFTLEKF TDYCNSKTNTG YSCLKVDLLFKREFSYYLIQIY
Sbjct: 200 VVKNLHLPRFTLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIY 249

Source: Phyllotreta striolata

Species: Phyllotreta striolata

Genus: Phyllotreta

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332294196|gb|AEE39458.1| glutamate-gated chloride channel [Laodelphax striatella] gi|384568996|gb|AFI09243.1| glutamate-gated chloride channel [Laodelphax striatella]

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 131/230 (56%), Positives = 148/230 (64%), Gaps = 59/230 (25%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           EYSVQLTFREQWLDERLK+ND+ G+IKYLTLTEA+RVW                  MP++
Sbjct: 86  EYSVQLTFREQWLDERLKFNDFGGKIKYLTLTEANRVW------------------MPDL 127

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
           +                 N ++   H                          ++I    +
Sbjct: 128 F---------------FSNEKEGRFH--------------------------NIIMPNVY 146

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
             +F   ++ Y   ISLTLSCPMNLKLYPLDRQ CSL+MASYGWTTDDL+FLWKEGDPVQ
Sbjct: 147 IRIFPYGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDLVFLWKEGDPVQ 206

Query: 181 VVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           VVKNLHLPRFTLEKF TDYCNSKTNTG YSCLKVDLLFKREFSYYLIQIY
Sbjct: 207 VVKNLHLPRFTLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIY 256

Source: Laodelphax striatella

Species: Laodelphax striatella

Genus: Laodelphax

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110555514|gb|ABG75737.1| glutamate-gated chloride channel [Apis mellifera]

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 132/230 (57%), Positives = 149/230 (64%), Gaps = 59/230 (25%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           EYSVQLTFREQWLDERL++ND+ GR+KYLTLT+ASRVW                  MP++
Sbjct: 79  EYSVQLTFREQWLDERLRFNDFGGRLKYLTLTDASRVW------------------MPDL 120

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
           +     +G          N+    V++ +               FP  S           
Sbjct: 121 FFSNEKEGH-------FHNIIMPNVYIRI---------------FPNGS----------- 147

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
                   + Y   ISLTLSCPMNLKLYPLDRQ CSL+MASYGWTTDDL+FLWKEGDPVQ
Sbjct: 148 --------VLYSIRISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDLVFLWKEGDPVQ 199

Query: 181 VVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           VVKNLHLPRFTLEKF+TDYCNSKTNTG YSCLKVDLLFKREFSYYLIQIY
Sbjct: 200 VVKNLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIY 249

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
FB|FBgn0024963	456	GluClalpha "GluClalpha" [Droso	0.465	0.236	0.842	3.3e-49
WB|WBGene00001593	484	glc-3 [Caenorhabditis elegans	0.439	0.210	0.509	1e-46
UNIPROTKB|Q14C71	366	GLRA1 "GLRA1 protein" [Homo sa	0.443	0.281	0.442	3.8e-37
UNIPROTKB|F1MNR0	375	GLRA3 "Uncharacterized protein	0.465	0.288	0.440	6.4e-37
UNIPROTKB|F1RJ16	376	GLRA3 "Uncharacterized protein	0.465	0.287	0.440	6.4e-37
UNIPROTKB|E2QZJ3	374	GLRA2 "Uncharacterized protein	0.431	0.267	0.455	7.1e-37
ZFIN|ZDB-GENE-020402-1	450	glra3 "glycine receptor, alpha	0.461	0.237	0.454	8.5e-37
UNIPROTKB|F1SQV0	385	GLRA2 "Uncharacterized protein	0.431	0.259	0.455	1.2e-36
UNIPROTKB|K7GSI6	385	GLRA2 "Uncharacterized protein	0.431	0.259	0.455	1.2e-36
UNIPROTKB|F1Q2X8	409	GLRA3 "Uncharacterized protein	0.465	0.264	0.440	2.3e-36

FB|FBgn0024963 GluClalpha "GluClalpha" [Drosophila melanogaster (taxid:7227)]

 Score = 493 (178.6 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 91/108 (84%), Positives = 98/108 (90%)

Query:   123 VFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVV 182
             +F   ++ Y   ISLTL+CPMNLKLYPLDRQ CSL+MASYGWTT+DL+FLWKEGDPVQVV
Sbjct:   145 IFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGDPVQVV 204

Query:   183 KNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
             KNLHLPRFTLEKF TDYCNSKTNTG YSCLKVDLLFKREFSYYLIQIY
Sbjct:   205 KNLHLPRFTLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIY 252

GO:0008068 "extracellular-glutamate-gated chloride channel activity" evidence=NAS;IDA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

WB|WBGene00001593 glc-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 286 (105.7 bits), Expect = 1.0e-46, Sum P(2) = 1.0e-46
 Identities = 53/104 (50%), Positives = 72/104 (69%)

Query:   129 LTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKNLH-- 186
             + Y   IS+ LSCPM+L+ YP+D Q+C + +ASY +T +D+ + WK+ DPVQ+ K LH  
Sbjct:   149 ILYSVRISMVLSCPMHLQYYPMDVQTCLIDLASYAYTENDIEYRWKKTDPVQLKKGLHSS 208

Query:   187 LPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
             LP F L    T  C SKTNTG YSCL+  L  +R+FSYYL+Q+Y
Sbjct:   209 LPSFELNNVDTTLCTSKTNTGTYSCLRTVLELRRQFSYYLLQLY 252

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

UNIPROTKB|Q14C71 GLRA1 "GLRA1 protein" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 3.8e-37, Sum P(2) = 3.8e-37
 Identities = 46/104 (44%), Positives = 69/104 (66%)

Query:   128 NLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKNLHL 187
             N+ Y   I+LTL+CPM+LK +P+D Q+C +++ S+G+T +DLIF W+E   VQV   L L
Sbjct:    70 NVLYSIRITLTLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQEQGAVQVADGLTL 129

Query:   188 PRFTL-EKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
             P+F L E+    YC    NTG ++C++     +R+  YYLIQ+Y
Sbjct:   130 PQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMY 173

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|F1MNR0 GLRA3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 255 (94.8 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
 Identities = 48/109 (44%), Positives = 74/109 (67%)

Query:   123 VFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVV 182
             +F   N+ Y   ++LTLSCPM+LK +P+D Q+C +++ S+G+T +DLIF W++  PVQV 
Sbjct:    66 IFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVA 125

Query:   183 KNLHLPRFTL-EKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
             + L LP+F L E+    YC    NTG ++C++V    +R+  YYLIQ+Y
Sbjct:   126 EGLTLPQFLLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMY 174

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

UNIPROTKB|F1RJ16 GLRA3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 255 (94.8 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
 Identities = 48/109 (44%), Positives = 74/109 (67%)

Query:   123 VFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVV 182
             +F   N+ Y   ++LTLSCPM+LK +P+D Q+C +++ S+G+T +DLIF W++  PVQV 
Sbjct:    65 IFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVA 124

Query:   183 KNLHLPRFTL-EKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
             + L LP+F L E+    YC    NTG ++C++V    +R+  YYLIQ+Y
Sbjct:   125 EGLTLPQFLLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMY 173

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

UNIPROTKB|E2QZJ3 GLRA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 250 (93.1 bits), Expect = 7.1e-37, Sum P(2) = 7.1e-37
 Identities = 46/101 (45%), Positives = 69/101 (68%)

Query:   131 YWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKNLHLPRF 190
             Y   ++LTLSCPM+LK +P+D Q+C++++ S+G+T +DLIF W    PVQV + L LP+F
Sbjct:   162 YSIRLTLTLSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQF 221

Query:   191 TL-EKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
              L E+    YC    NTG ++C++V    +R+  YYLIQ+Y
Sbjct:   222 ILKEEKELGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMY 262

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016934 "extracellular-glycine-gated chloride channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

ZFIN|ZDB-GENE-020402-1 glra3 "glycine receptor, alpha 3" [Danio rerio (taxid:7955)]

 Score = 256 (95.2 bits), Expect = 8.5e-37, Sum P(2) = 8.5e-37
 Identities = 50/110 (45%), Positives = 74/110 (67%)

Query:   123 VFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVV 182
             +F   N+ Y   ++LTLSCPM+LK +P+D Q+C +++ S+G+T +DLIF W+E  PVQV 
Sbjct:   153 IFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQEKGPVQVA 212

Query:   183 KNLHLPRFTLEKFYTD--YCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
               L LP+F L K  +D  YC    NTG ++C++V    +R+  YYLIQ+Y
Sbjct:   213 DGLTLPQFIL-KDESDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMY 261

GO:0016594 "glycine binding" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045202 "synapse" evidence=IEA

UNIPROTKB|F1SQV0 GLRA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 250 (93.1 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
 Identities = 46/101 (45%), Positives = 69/101 (68%)

Query:   131 YWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKNLHLPRF 190
             Y   ++LTLSCPM+LK +P+D Q+C++++ S+G+T +DLIF W    PVQV + L LP+F
Sbjct:    95 YSIRLTLTLSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQF 154

Query:   191 TL-EKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
              L E+    YC    NTG ++C++V    +R+  YYLIQ+Y
Sbjct:   155 ILKEEKELGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMY 195

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016934 "extracellular-glycine-gated chloride channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|K7GSI6 GLRA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 250 (93.1 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
 Identities = 46/101 (45%), Positives = 69/101 (68%)

Query:   131 YWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKNLHLPRF 190
             Y   ++LTLSCPM+LK +P+D Q+C++++ S+G+T +DLIF W    PVQV + L LP+F
Sbjct:    95 YSIRLTLTLSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQF 154

Query:   191 TL-EKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
              L E+    YC    NTG ++C++V    +R+  YYLIQ+Y
Sbjct:   155 ILKEEKELGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMY 195

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016934 "extracellular-glycine-gated chloride channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|F1Q2X8 GLRA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 255 (94.8 bits), Expect = 2.3e-36, Sum P(2) = 2.3e-36
 Identities = 48/109 (44%), Positives = 74/109 (67%)

Query:   123 VFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVV 182
             +F   N+ Y   ++LTLSCPM+LK +P+D Q+C +++ S+G+T +DLIF W++  PVQV 
Sbjct:   113 IFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVA 172

Query:   183 KNLHLPRFTL-EKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
             + L LP+F L E+    YC    NTG ++C++V    +R+  YYLIQ+Y
Sbjct:   173 EGLTLPQFLLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMY 221

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94900	GLUCL_DROME	No assigned EC number	0.5608	0.7370	0.375	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	232
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	8e-39
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	7e-27
pfam02931	215	pfam02931, Neur_chan_LBD, Neurotransmitter-gated i	3e-25
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	1e-07
pfam02932	228	pfam02932, Neur_chan_memb, Neurotransmitter-gated	0.001

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score =  139 bits (352), Expect = 8e-39
 Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 3/106 (2%)

Query: 128 NLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKNL-- 185
           ++ Y   I+LTL+CPM+L+ +P D Q+CSLK  S+G+TT+D+   WKE   VQV  +L  
Sbjct: 143 SVLYSPRITLTLACPMDLRNFPFDVQNCSLKFESWGYTTNDIKLEWKEQGAVQVDDSLFI 202

Query: 186 HLPRFTLEKFY-TDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
            LP F L   Y T YC S+TNTG Y CL    + +R   YYL+Q+Y
Sbjct: 203 SLPEFELLGVYGTRYCTSETNTGEYPCLTFSFVLRRRPLYYLLQLY 248

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score =  106 bits (267), Expect = 7e-27
 Identities = 34/74 (45%), Positives = 47/74 (63%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           +Y+  +  R++W DERL++N  +     L  T    +W+PD+FF NEK+  FH I M NV
Sbjct: 75  DYTTNIWLRQEWTDERLQWNPEEYPGVTLVRTPDDSIWVPDIFFYNEKDARFHGITMTNV 134

Query: 61  YIRIHPQGSVLYSI 74
            +RIHP GSVLYS 
Sbjct: 135 LVRIHPNGSVLYSP 148

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain

 Score = 98.1 bits (245), Expect = 3e-25
 Identities = 54/228 (23%), Positives = 87/228 (38%), Gaps = 74/228 (32%)

Query: 1   EYSVQLTFREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMP 58
           + +  +  R+QW DERL ++  DY G I  L L    ++W PD+   N K    H+I  P
Sbjct: 46  DLTTNVWLRQQWTDERLAWDPEDYGG-ITSLRLPS-DKIWKPDIVLYN-KADGIHDITTP 102

Query: 59  NVYIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRI 118
           N  +R++P G+VL+S                                             
Sbjct: 103 NTNVRVYPDGTVLWSP-------------------------------------------- 118

Query: 119 TFPLVFALF---NLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKE 175
             P ++      +LTY+         P        D+Q+CSLK  S+ +  +++   WK+
Sbjct: 119 --PAIYKSSCPMDLTYF---------PF-------DQQNCSLKFGSWTYNGEEVDLRWKD 160

Query: 176 GDPVQVVKNLHLPRFTLEKFYT-DYCNSKTN---TGAYSCLKVDLLFK 219
             P  + + + L  FT    +      +K N    G YS L  D+ F 
Sbjct: 161 DTPPILDEEIDLSDFTENGEWDIVDVPAKRNEYPYGCYSELYPDVTFY 208

This family is the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. Length = 215

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 22/99 (22%)

Query: 54  NIIMPNVYIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPR--------------KNCCR 99
           +  + +V +R    G  L S ++    RQ  +H   P                  +   R
Sbjct: 364 HASLSSVEMRAKDGGRGLESPTE----RQRLLHSPPPAEGDLDLAGILEEVRIAHRFRKR 419

Query: 100 SWLAKFP----TRSKRIDVISRITFPLVFALFNLTYWST 134
               +       R+K ID +SR+ FPL F LFN+ YW +
Sbjct: 420 DESEEVVRDWKFRAKVIDKLSRMAFPLAFLLFNIGYWMS 458

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 110 KRIDVISRITFPLVFALFNLTYW 132
             ID +SR  FP+ F L  L YW
Sbjct: 206 MVIDRLSRWIFPIAFVLGTLVYW 228

This family includes the four transmembrane helices that form the ion channel. Length = 228

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
KOG3643|consensus	459		100.0
KOG3644|consensus	457		100.0
TIGR00860	459	LIC Cation transporter family protein. selective w	100.0
PF02931	217	Neur_chan_LBD: Neurotransmitter-gated ion-channel	99.97
KOG3645|consensus	449		99.97
KOG3642|consensus	466		99.96
KOG3646|consensus	486		99.96
KOG3642|consensus	466		98.83
KOG3643|consensus	459		97.18
KOG3644|consensus	457		96.68
PF02932	237	Neur_chan_memb: Neurotransmitter-gated ion-channel	96.35

>KOG3643|consensus

Probab=100.00  E-value=9.9e-36  Score=281.24  Aligned_cols=170  Identities=39%  Similarity=0.857  Sum_probs=161.4

Q ss_pred             CeEEEEEEEeEEEccCceecCCCCCeeEEEecc--CCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEecccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTE--ASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLD   78 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~g~i~~l~l~~--~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~   78 (232)
                      ||++.++++|.|.||||+|+  .++++.+++.+  .+++|.||.++-|++.+.+|+.+..|..++|++||+|+|+.+   
T Consensus        79 DyTlt~y~rq~W~D~RLay~--~~~~~slTl~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~lRl~~dGtVlys~R---  153 (459)
T KOG3643|consen   79 DYTLTMYLRQTWRDPRLAYS--SKNIDSLTLDVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLLRLHPDGTVLYSIR---  153 (459)
T ss_pred             hhhhhhhhhhhhcCcccccC--CCCCceEEEchhhhhccccCceecccCcccccceeeecceEEEEcCCCeEEEEEE---
Confidence            68999999999999999999  46899999976  899999999999999999999999999999999999999999   


Q ss_pred             ccccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeE
Q psy1864          79 NMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLK  158 (232)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~  158 (232)
                                                                              ++.|++|+|||++||+|+|.|+|.
T Consensus       154 --------------------------------------------------------lT~Ta~C~MDL~~fPmD~Q~C~Le  177 (459)
T KOG3643|consen  154 --------------------------------------------------------LTVTAACPMDLKLFPMDSQNCKLE  177 (459)
T ss_pred             --------------------------------------------------------EEEEEecccccccCCCcccceeEE
Confidence                                                                    999999999999999999999999


Q ss_pred             EeeeccCcceEEEEecCCC-CeeeeccEEeCcEEEEEEEEEeeecCCCCCceEEEEEEEEEEecccceEEEEEE
Q psy1864         159 MASYGWTTDDLIFLWKEGD-PVQVVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIYY  231 (232)
Q Consensus       159 ~~S~~~~~~~l~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~~  231 (232)
                      +.||||+++|+.+.|++|+ ++...++.+|++|++.++.+........+|.|+.|.+.|+|+|+.+||++|+|+
T Consensus       178 iESYGYt~~DI~y~W~~g~~av~~~e~i~LpqFti~~~~~~s~~~~~sTG~Y~RL~l~F~l~Rnigf~ilQ~y~  251 (459)
T KOG3643|consen  178 IESYGYTTDDIEYYWSKGDNAVKGDEKIELPQFTITEYHVTSRLVSFSTGNYSRLSLSFQLRRNIGFYILQTYI  251 (459)
T ss_pred             EEecccccccEEEEEcCCCccccceeeeeccceEEEEEEEEEEEEEEccccceeEEEEEEEEeeccEEEEeeec
Confidence            9999999999999999865 788888999999999999888777777799999999999999999999999986

>KOG3644|consensus

Probab=100.00  E-value=1.7e-34  Score=276.33  Aligned_cols=172  Identities=46%  Similarity=0.880  Sum_probs=157.7

Q ss_pred             CeEEEEEEEeEEEccCceec-CC-C-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccc
Q psy1864           1 EYSVQLTFREQWLDERLKYN-DY-D-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDL   77 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn-~~-~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~   77 (232)
                      ||+++++++|+|.||||+++ .. + .......+....+||+||+++.|++.+.+|....+|+.++|++||+|.++.+  
T Consensus        86 df~~di~~~~~W~DpRL~~~~~~~~~~~~~~~~l~~~~~iW~Pd~~F~NsK~a~~H~~~~~N~ll~I~pnGtV~~~~R--  163 (457)
T KOG3644|consen   86 DFEVDIYFRERWQDPRLAYNALKFDHILPCKLNLSLKQKIWTPDTFFANSKSAEFHKSTKPNVLLMIFPNGTVWYSYR--  163 (457)
T ss_pred             eEEeeeeeeeeEeCccccccccCcccccccccccccCCceecCceeeecccceeeecCCCCceEEEEecCCeEEEEEE--
Confidence            69999999999999999998 34 3 3233333332477999999999999999999999999999999999999999  


Q ss_pred             cccccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEe
Q psy1864          78 DNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSL  157 (232)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l  157 (232)
                                                                               +.++++|+|+|++||+|+|.|.+
T Consensus       164 ---------------------------------------------------------i~l~~~C~m~L~~fP~D~Q~C~l  186 (457)
T KOG3644|consen  164 ---------------------------------------------------------ISLTLPCNMDLSKFPMDSQECKL  186 (457)
T ss_pred             ---------------------------------------------------------EEEeeceeeehhhCCCccceeeE
Confidence                                                                     99999999999999999999999


Q ss_pred             EEeeeccCcceEEEEecCCCCeeeeccEEeCcEEEEEEEEEeeecCCCCCceEEEEEEEEEEecccceEEEEEE
Q psy1864         158 KMASYGWTTDDLIFLWKEGDPVQVVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIYY  231 (232)
Q Consensus       158 ~~~S~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~~  231 (232)
                      .+.||+|+++|+++.|.+.+++++.++.+|++|.+.++....|+....+|.|||++++++|+|+.+||++|.|+
T Consensus       187 ~~eSy~Yn~~~v~~~W~~~~pv~~~~~i~LPdf~l~~~~~~~~~~~y~~G~~scL~v~~~f~R~~g~yllQ~Yi  260 (457)
T KOG3644|consen  187 QLESYAYNTDDVRLEWKEWNPVQVKKDIKLPDFSLPSFSTEKCTGSYTTGVYSCLRVTFTFKRRYGYYLLQTYI  260 (457)
T ss_pred             EEEEeccccceEEEEecCCCCcccccCccCCceeccceeeccccccccCcceEEEEEEEEEEEeehhhhhHHHh
Confidence            99999999999999999999999999999999999999888887767799999999999999999999999986

>TIGR00860 LIC Cation transporter family protein

Probab=100.00  E-value=6.3e-34  Score=271.07  Aligned_cols=167  Identities=43%  Similarity=0.867  Sum_probs=143.9

Q ss_pred             CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDN   79 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~   79 (232)
                      +|++++|++++|.|+||+|||++ ||++.+.++ .++||+||++++|++++..+.....++.+++++||+|.+..+    
T Consensus        75 ~~t~~~wl~~~W~D~rL~Wnp~~y~~i~~i~~~-~~~IW~PDi~l~N~~~~~~~~~~~~~~~v~~~~~G~V~~~~~----  149 (459)
T TIGR00860        75 DYTTNIWLRQEWTDERLQWNPEEYPGVTLVRTP-DDSIWVPDIFFYNEKDARFHGITMTNVLVRIHPNGSVLYSPR----  149 (459)
T ss_pred             eEEEeeeeeeEEeCCccCCCCccCCCceecccc-ccccccCcEEeecCccccccccccCceEEEEcCCCcEEEecC----
Confidence            47899999999999999999999 999999998 999999999999999988887777889999999999999999    


Q ss_pred             cccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEE
Q psy1864          80 MRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKM  159 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~  159 (232)
                                                                             +..+++|+||+++||||+|.|+|+|
T Consensus       150 -------------------------------------------------------~~~~~~C~~d~~~FPfD~Q~C~l~f  174 (459)
T TIGR00860       150 -------------------------------------------------------ITLTLACPMDLRNFPFDVQNCSLKF  174 (459)
T ss_pred             -------------------------------------------------------ceEEecccceeccCCCCCccccEEE
Confidence                                                                   9999999999999999999999999


Q ss_pred             eeeccCcceEEEEecCCCCeee-------eccEEeCcEEEEEEEEEeeecCCCCCceEEEEEEEEEEecccceEEEEEE
Q psy1864         160 ASYGWTTDDLIFLWKEGDPVQV-------VKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIYY  231 (232)
Q Consensus       160 ~S~~~~~~~l~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~~  231 (232)
                      +||+|+.+++.+.|.+++++..       ..+|++.+....+.....|+    .+.|++++++++++|+++||++++++
T Consensus       175 gSw~y~~~~i~l~~~~~~~v~~~~~~~~~~~eW~l~~~~~~~~~~~~~~----~~~y~~l~~~~~l~R~~~~y~~~l~i  249 (459)
T TIGR00860       175 ESWGYTTNDIKLEWKEQGAVQVDDSLFISLPEFELLGVYGTRYCTSETN----TGEYPCLTFSFVLRRRPLYYLLQLYI  249 (459)
T ss_pred             hhhccccceEEEEECCCCceEechhhccccCceEEEeeeeeeeEecccC----CCCcCeEEEEEEEEEcccceeeeehH
Confidence            9999999999999876544332       23466555433332222233    46999999999999999999999874

selective while glycine receptors are anion selective).

>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=99.97  E-value=5.9e-30  Score=216.40  Aligned_cols=158  Identities=33%  Similarity=0.673  Sum_probs=127.5

Q ss_pred             CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDN   79 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~   79 (232)
                      +|+++++++++|.|+||+|||++ +|++.+.++ .++||+||+++.|...+. .........+.|+++|+|.+..+    
T Consensus        46 ~~~~~~~~~~~W~D~rL~w~~~~~~~i~~~~v~-~~~iW~P~l~~~n~~~~~-~~~~~~~~~~~v~~~G~V~~~~~----  119 (217)
T PF02931_consen   46 TFTVDGFIRLSWKDPRLKWNPSDYGGIESIRVP-SSQIWTPDLYFYNSVSGS-FEITEPNSNVRVYSDGTVRYSPR----  119 (217)
T ss_dssp             EEEEEEEEEEEEEECCGE-STTTTTTESEEEEE-GGGS----EEETTBSSSE-EECS-SSEEEEEETTSEEEEEEE----
T ss_pred             hhhhhhhhceeccccccccChhhccCccccccc-ccceEecccccccccccc-eecccccccccccccchheeeec----
Confidence            37899999999999999999999 999999998 889999999999954333 33333567888999999999999    


Q ss_pred             cccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEE
Q psy1864          80 MRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKM  159 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~  159 (232)
                                                                             +.+++.|+|+++.||||+|.|.++|
T Consensus       120 -------------------------------------------------------~~~~~~C~~d~~~fPfD~q~C~i~~  144 (217)
T PF02931_consen  120 -------------------------------------------------------FTLTFSCPMDLRDFPFDSQNCSIKF  144 (217)
T ss_dssp             -------------------------------------------------------EEEEEEECETTTSSSSSEEEEEEEE
T ss_pred             -------------------------------------------------------ccccccccccccccccccceeEEEE
Confidence                                                                   9999999999999999999999999


Q ss_pred             eeeccCcceEEEEecCCCC------------eeeeccEEeCcEEEEEEEEEe-eecCCCCCceEEEEEEEEEEecc
Q psy1864         160 ASYGWTTDDLIFLWKEGDP------------VQVVKNLHLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKREF  222 (232)
Q Consensus       160 ~S~~~~~~~l~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ys~l~~~l~lkR~~  222 (232)
                      +||+++.+++.+.+....+            .....+|++.+++.......+ |+..   ..|+++.++|+|+|+|
T Consensus       145 ~s~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~ew~~~~~~~~~~~~~~~~~~~---~~ys~l~~~~~l~R~~  217 (217)
T PF02931_consen  145 GSWSYNSEEVQLKWENKNPPIDENDEVSLSDFVSNSEWKIVSVTSTRRETTYGCYNE---PTYSMLSFTFTLKRRP  217 (217)
T ss_dssp             EESSSSTTTEEEEESCSSS-TTSSTTTSCTTCETTSSEEEEEEEEEEEEEEESTSSS---CSEEEEEEEEEEEEST
T ss_pred             ecccccccceeeeecccCceeeeeccccHHHccccceEEEEeeEEEEEEEccCCcCC---CCEeeEEEEEEEEECc
Confidence            9999999999999887321            223357898888877666654 3332   1299999999999997

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....

>KOG3645|consensus

Probab=99.97  E-value=8.1e-31  Score=249.36  Aligned_cols=164  Identities=24%  Similarity=0.535  Sum_probs=139.6

Q ss_pred             eEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEecccccc
Q psy1864           2 YSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDNM   80 (232)
Q Consensus         2 ~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~~   80 (232)
                      -++++|+.++|.|+||+|||++ |||+.++++ .++||.||+.++|+..+........+  +.+.++|+|.+..+     
T Consensus        76 ~t~~~wl~~~W~D~~L~Wnp~~~~~I~~i~vp-~~~IW~Pdi~l~N~~~~~~~~~~~~~--v~v~~~G~V~~~~p-----  147 (449)
T KOG3645|consen   76 MTTNVWLKQSWTDERLSWDPSDYGGITKIRVP-SSKIWLPDIVLYNNADGDFEVEDLTN--VLVTYTGEVLWYPP-----  147 (449)
T ss_pred             EEEEEEeeeEEeccCcccChHHcCCceEEEec-HHHcCcCcEEEEecccccccccccce--EEEEECCEEEEEcc-----
Confidence            3788999999999999999999 999999998 99999999999998888877766666  55578999999999     


Q ss_pred             ccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEEe
Q psy1864          81 RQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMA  160 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~~  160 (232)
                                                                            +..+++|++|+++||||.|.|+++|+
T Consensus       148 ------------------------------------------------------~i~~s~C~idv~~FPfD~Q~C~i~f~  173 (449)
T KOG3645|consen  148 ------------------------------------------------------AIYKSSCPIDVTYFPFDVQNCSIKFG  173 (449)
T ss_pred             ------------------------------------------------------eEEEeecccccccCCCcceeEeEEEe
Confidence                                                                  99999999999999999999999999


Q ss_pred             eeccCcceEE-EEecCC----CC--eeeeccEEeCcEEEEEEEEEe-eecCCCCCceEEEEEEEEEEecccceEEEEEE
Q psy1864         161 SYGWTTDDLI-FLWKEG----DP--VQVVKNLHLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKREFSYYLIQIYY  231 (232)
Q Consensus       161 S~~~~~~~l~-~~~~~~----~~--~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~~  231 (232)
                      ||.|+.+++. +.....    +.  ...+.+|.+.+.+.......+ |+.    +.|+.++|.+.+||+|+||++++++
T Consensus       174 sw~~~~~~i~~~~~~~~~~~~~~~~~~~n~eW~l~~~~~~~~~~~~~~~~----~~~~~i~f~l~irRkplyY~v~lii  248 (449)
T KOG3645|consen  174 SWTYDGSEVDGLDLNAQTIEVDLSDFIENSEWELLSVTVVREEKKYDCCP----GPYSDITFTITIRRKPLYYTVNLII  248 (449)
T ss_pred             ccccCccccceeeeccccccCCHHHcCCCCcEEEEeeeeEEeecccCCCC----CceeEEEEEEEEEeccceEEEehhh
Confidence            9999999765 332221    21  223457999988887766665 554    4899999999999999999999864

>KOG3642|consensus

Probab=99.96  E-value=4.7e-29  Score=236.90  Aligned_cols=168  Identities=37%  Similarity=0.774  Sum_probs=155.0

Q ss_pred             CeEEEEEEEeEEEccCceecCCCCCeeEEEecc--CCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEecccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTE--ASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLD   78 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~g~i~~l~l~~--~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~   78 (232)
                      ||+++++|||+|.|+||++|   |-.+.|.+..  .++||.||.++.|++.+..|...++|..++|..||++.|+.+   
T Consensus        88 eytid~~FrQ~W~D~RL~f~---~~~~~L~Ln~~m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~Ri~~dG~vlyt~R---  161 (466)
T KOG3642|consen   88 EYTIDCFFRQTWVDDRLKFN---GPQEALPLNSLMLSKIWIPDTFFRNGKKSYAHNITTPNKLVRIYIDGTVLYTMR---  161 (466)
T ss_pred             eEEEEEEEEEeehhhhhccc---CcchhhccchhhhcCcccCCcccccCcccceeeccCCCceEEEeECCcceEEEE---
Confidence            79999999999999999999   3455566654  899999999999999999999999999999999999999999   


Q ss_pred             ccccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeE
Q psy1864          79 NMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLK  158 (232)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~  158 (232)
                                                                              ....+.|||++..||+|.|.|.|+
T Consensus       162 --------------------------------------------------------lTi~A~C~m~l~~fPMD~haCpl~  185 (466)
T KOG3642|consen  162 --------------------------------------------------------LTIPAECPMHLARFPMDSHACPLK  185 (466)
T ss_pred             --------------------------------------------------------EeecccCcchhhcCCCCcccCcce
Confidence                                                                    999999999999999999999999


Q ss_pred             EeeeccCcceEEEEecCCCCeeeec--cEEeCcEEEEEEEEEeeecCCCCCceEEEEEEEEEEecccceEEEEEE
Q psy1864         159 MASYGWTTDDLIFLWKEGDPVQVVK--NLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIYY  231 (232)
Q Consensus       159 ~~S~~~~~~~l~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~~  231 (232)
                      |+|++|+.+|++..|..+ .+.+.+  .|+|.+|.+.+.........+.+|.|+.+++.|+|+|+.|||++|+|+
T Consensus       186 fgSy~Y~~~evvY~W~~~-~VeV~~~~~~~L~Qf~l~g~~~~te~i~t~~gey~vmtv~F~L~R~~GYf~iQ~Yl  259 (466)
T KOG3642|consen  186 FGSYAYPGSEVVYKWKKR-SVEVNETDSWSLDQFDLLGVSVGTEDIKTSSGEYSVMTVYFHLSRRQGYFIIQIYL  259 (466)
T ss_pred             ecccCcCCCCEEEEEecc-cEEEcCCCCccccceeeecccccccceEecCCCEEEEEEEEeccceeeEEEEeecc
Confidence            999999999999999987 566654  489999999988888888888999999999999999999999999986

>KOG3646|consensus

Probab=99.96  E-value=1.2e-29  Score=241.06  Aligned_cols=162  Identities=23%  Similarity=0.423  Sum_probs=142.9

Q ss_pred             EEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccccc
Q psy1864           3 SVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDNMR   81 (232)
Q Consensus         3 ~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~~~   81 (232)
                      ++++|++++|+|.+|+|||++ |||+.++++ .+++|.||+.++|+++..++..-..|..+  .++|+|.|.++      
T Consensus        74 ~~naWl~y~W~D~~LrW~pseygnI~dvR~p-~~~iWkPDVLLYNSade~FDsTy~tN~Vv--~~tG~v~~vPP------  144 (486)
T KOG3646|consen   74 SVNAWLQYQWNDYKLRWDPSEYGNITDIRFP-GGNIWKPDVLLYNSADEQFDSTYKTNYVV--YSTGSVLWVPP------  144 (486)
T ss_pred             hhhhhhheeehhhhhccCHHHhCCceeeccC-CccccCCceeccccccccCCCcceeeEEE--ccCCeeeecCC------
Confidence            578999999999999999999 999999998 88999999999999998887766665554  89999999999      


Q ss_pred             cccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEEee
Q psy1864          82 QCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMAS  161 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~~S  161 (232)
                                                                           ..++++|++|++.||||.|.|.+||||
T Consensus       145 -----------------------------------------------------GIfk~sCkiDItwFPFD~Q~C~mKFGS  171 (486)
T KOG3646|consen  145 -----------------------------------------------------GIFKSSCKIDITWFPFDDQVCYLKFGS  171 (486)
T ss_pred             -----------------------------------------------------ceeeeeeEEEEEEecccccEEEEEeee
Confidence                                                                 999999999999999999999999999


Q ss_pred             eccCcceEEEEecCCC----Ceee--eccEEeCcEEEEEEEEEe-eecCCCCCceEEEEEEEEEEecccceEEEEE
Q psy1864         162 YGWTTDDLIFLWKEGD----PVQV--VKNLHLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKREFSYYLIQIY  230 (232)
Q Consensus       162 ~~~~~~~l~~~~~~~~----~~~~--~~~~~l~~~~~~~~~~~~-~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~  230 (232)
                      |+|+...+.+....++    ...+  ++||+|.+..+.+....| ||++    +|..++|+++++||..||.+|++
T Consensus       172 WTY~G~~lDL~~~~~~g~~Dls~yi~NGEW~Ll~~pakr~~~~y~cC~e----pY~dv~F~l~irRRTLyYgfNlI  243 (486)
T KOG3646|consen  172 WTYAGILLDLRIDDEDGGIDLSTYIPNGEWDLLGTPAKREEKTYDCCPE----PYPDVTFYLHIRRRTLYYGFNLI  243 (486)
T ss_pred             EEEcceeeeeeeccccCCcchhhcccCCceeeccccccceeeecccCCC----CcceeEEEEEEEehhhHHHHHHH
Confidence            9999998887765543    2222  457999999998766665 8886    99999999999999999988764

>KOG3642|consensus

Probab=98.83  E-value=2.5e-10  Score=109.74  Aligned_cols=36  Identities=42%  Similarity=0.868  Sum_probs=34.8

Q ss_pred             c-ccccccccceeeeeeeeecceeEeeeeeeeeeeee
Q psy1864         101 W-LAKFPTRSKRIDVISRITFPLVFALFNLTYWSTIS  136 (232)
Q Consensus       101 w-~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~  136 (232)
                      | +||+++++.|+|+||||+||++|++|||+||++..
T Consensus       420 ~~~~~~~~~vskiD~~sRivFPv~F~~fNlvYW~~yL  456 (466)
T KOG3642|consen  420 WRQGRLYISVSKIDNYSRIVFPVLFILFNLVYWVVYL  456 (466)
T ss_pred             ccCCCcccchhhhhccchhhhHHHHHHHHHHHHhhhc
Confidence            9 99999999999999999999999999999999873

>KOG3643|consensus

Probab=97.18  E-value=1.8e-05  Score=76.42  Aligned_cols=27  Identities=52%  Similarity=0.995  Sum_probs=25.1

Q ss_pred             cceeeeeeeeecceeEeeeeeeeeeee
Q psy1864         109 SKRIDVISRITFPLVFALFNLTYWSTI  135 (232)
Q Consensus       109 ~~~~~~~~r~~fp~~f~~fn~~yw~~~  135 (232)
                      ...+|-|||++||++|.|||++||+..
T Consensus       431 ~~~IDkySR~~FP~~F~lFNivYW~yy  457 (459)
T KOG3643|consen  431 VSKIDKYSRIVFPLAFSLFNIVYWLYY  457 (459)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhee
Confidence            668999999999999999999999864

>KOG3644|consensus

Probab=96.68  E-value=7.5e-05  Score=72.67  Aligned_cols=29  Identities=52%  Similarity=0.989  Sum_probs=26.6

Q ss_pred             ccceeeeeeeeecceeEeeeeeeeeeeee
Q psy1864         108 RSKRIDVISRITFPLVFALFNLTYWSTIS  136 (232)
Q Consensus       108 ~~~~~~~~~r~~fp~~f~~fn~~yw~~~~  136 (232)
                      ...++|.+||++||++|++||++||....
T Consensus       427 ~~~~ID~~sr~~FP~~F~~FN~~YW~~y~  455 (457)
T KOG3644|consen  427 TAERIDRISRFLFPLLFLLFNIIYWTYYL  455 (457)
T ss_pred             chHHHhHHHHHHHHHHHHHHHHHHhhheE
Confidence            67789999999999999999999998754

>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=96.35  E-value=7.7e-05  Score=59.14  Aligned_cols=26  Identities=46%  Similarity=0.908  Sum_probs=24.2

Q ss_pred             cccceeeeeeeeecceeEeeeeeeee
Q psy1864         107 TRSKRIDVISRITFPLVFALFNLTYW  132 (232)
Q Consensus       107 ~~~~~~~~~~r~~fp~~f~~fn~~yw  132 (232)
                      ....++|-++||+||++|++||++||
T Consensus       212 ~~A~viDR~~~~~F~i~f~~~~i~yw  237 (237)
T PF02932_consen  212 FVAMVIDRLFRILFPIAFILFNIVYW  237 (237)
T ss_dssp             STSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhC
Confidence            45679999999999999999999999

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	232
3rhw_A	347	C. Elegans Glutamate-Gated Chloride Channel (Glucl)		9e-27
4aq5_A	461	Gating Movement In Acetylcholine Receptor Analysed		5e-04
2bg9_A	370	Refined Structure Of The Nicotinic Acetylcholine Re		5e-04

>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In Complex With Fab And Ivermectin Length = 347

Iteration: 1
 Score =  116 bits (291), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 107/233 (45%), Gaps = 62/233 (26%)
Query: 1   EYSVQLTFREQWLDERLKYN-DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPN 59
           EYS QLT RE W+D+RL Y    DG+  ++ LT                    H I MP+
Sbjct: 48  EYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVG------------------HQIWMPD 89
Query: 60  VYIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRIT 119
            +                 N +Q   H                        + +V+ RI 
Sbjct: 90  TF---------------FPNEKQAYKHTI---------------------DKPNVLIRI- 112
Query: 120 FPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPV 179
                    + Y   ISL LSCPM L+ YP+D Q CS+ +ASY +TT D+ +LWKE  P+
Sbjct: 113 ----HNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPL 168
Query: 180 QVVKNL--HLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           Q+   L   LP F L    T YC S TNTG YSCL+  +  KREFS+YL+Q+Y
Sbjct: 169 QLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLY 221

>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 461

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 8   FREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHF 52
            R+QW+D RL++N  D G IK + L  +  VW+PDL   N  +G F
Sbjct: 80  LRQQWIDVRLRWNPADYGGIKKIRL-PSDDVWLPDLVLYNNADGDF 124

>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution. Length = 370

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 8   FREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHF 52
            R+QW+D RL++N  D G IK + L  +  VW+PDL   N  +G F
Sbjct: 56  LRQQWIDVRLRWNPADYGGIKKIRL-PSDDVWLPDLVLYNNADGDF 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	3e-48
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	4e-48
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	2e-32
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	4e-23
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	1e-29
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	1e-17
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	5e-07
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	2e-06
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	5e-06
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	7e-06
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	1e-05
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	4e-05
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	7e-05
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	1e-04
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	2e-04
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	3e-04
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	4e-04

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322

 Score =  160 bits (407), Expect = 3e-48
 Identities = 36/242 (14%), Positives = 68/242 (28%), Gaps = 76/242 (31%)

Query: 1   EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTE--ASRVWMPDLFFSNEKEGHFHNIIM 57
            Y V      QW  +  K        ++   +     + +W+P L F N       +   
Sbjct: 32  TYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFINVV----GSPDT 87

Query: 58  PNVYIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISR 117
            N  + + P G V+Y+                                           R
Sbjct: 88  GNKRLMLFPDGRVIYNA------------------------------------------R 105

Query: 118 ITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGD 177
                               + S  M+ +L+P DRQ   L++  + +    L F   +  
Sbjct: 106 FLG-----------------SFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQ-V 147

Query: 178 PVQVVKNLHLPRFTL---------EKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQ 228
             + + N  +  + +         +  Y    + + N   +S + V +   R  SYYL  
Sbjct: 148 YTENIDNEEIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWS 207

Query: 229 IY 230
             
Sbjct: 208 FI 209

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201

 Score =  156 bits (396), Expect = 4e-48
 Identities = 29/230 (12%), Positives = 64/230 (27%), Gaps = 67/230 (29%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
            + V       W D RL ++     ++  T  E   +W+P++ F N +     +++    
Sbjct: 36  TFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY-EPEAIWIPEIRFVNVENARDADVVD--- 91

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
            I + P G+V Y                                            R + 
Sbjct: 92  -ISVSPDGTVQYLE------------------------------------------RFSA 108

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
                             +  P++ +    D Q+  + +      T +++      + V 
Sbjct: 109 -----------------RVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDL-EKVG 150

Query: 181 VVKNLHLPRFTLEKFYTDYCNSKTNTG--AYSCLKVDLLFKREFSYYLIQ 228
              ++ L  + +E F      +         S L   L   R+  ++   
Sbjct: 151 KNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQGGHHHHH 200

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347

 Score =  119 bits (300), Expect = 2e-32
 Identities = 53/103 (51%), Positives = 69/103 (66%), Gaps = 3/103 (2%)

Query: 131 YWST-ISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQV--VKNLHL 187
            +S  ISL LSCPM L+ YP+D Q CS+ +ASY +TT D+ +LWKE  P+Q+    +  L
Sbjct: 119 LYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSL 178

Query: 188 PRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
           P F L    T YC S TNTG YSCL+  +  KREFS+YL+Q+Y
Sbjct: 179 PSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLY 221

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347

 Score = 94.5 bits (235), Expect = 4e-23
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 1   EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPN 59
           EYS QLT RE W+D+RL Y     G+  ++ LT   ++WMPD FF NEK+ + H I  PN
Sbjct: 48  EYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPN 107

Query: 60  VYIRIHPQGSVLYSI 74
           V IRIH  G+VLYS+
Sbjct: 108 VLIRIHNDGTVLYSV 122

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score =  111 bits (281), Expect = 1e-29
 Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 3/105 (2%)

Query: 128 NLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKNLHL 187
            + Y    S  +  P++ + YP D Q+  + +      T +++      + V    ++ L
Sbjct: 103 TVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDL-EKVGKNDDVFL 161

Query: 188 PRFTLEKFYTDYCNSK--TNTGAYSCLKVDLLFKREFSYYLIQIY 230
             + +E F      +         S L   L   R++  Y+  I 
Sbjct: 162 TGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNII 206

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score = 79.2 bits (196), Expect = 1e-17
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
            + V       W D RL ++     ++  T      +W+P++ F N +     +++    
Sbjct: 40  TFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYE-PEAIWIPEIRFVNVENARDADVVD--- 95

Query: 61  YIRIHPQGSVLYSI 74
            I + P G+V Y  
Sbjct: 96  -ISVSPDGTVQYLE 108

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 41/238 (17%), Positives = 80/238 (33%), Gaps = 81/238 (34%)

Query: 3   SVQLTFREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
              +  R+QW+D RL++N  DY G IK + L  +  VW+PDL   N  +G F  + M  +
Sbjct: 51  ETNVRLRQQWIDVRLRWNPADYGG-IKKIRLP-SDDVWLPDLVLYNNADGDFAIVHMTKL 108

Query: 61  YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
              +   G +++                 P    K+ C                      
Sbjct: 109 L--LDYTGKIMW----------------TPPAIFKSYCE--------------------- 129

Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTD----DLIFLWKEG 176
                   +T++                P D+Q+C++K+    WT D     +       
Sbjct: 130 ------IIVTHF----------------PFDQQNCTMKLGI--WTYDGTKVSISPESDRP 165

Query: 177 DPVQVVKN-----LHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQI 229
           D    +++          +    +YT   ++      Y  +    + +R   Y+++ +
Sbjct: 166 DLSTFMESGEWVMKDYRGWKHWVYYTCCPDTP-----YLDITYHFIMQRIPLYFVVNV 218

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 43/230 (18%), Positives = 70/230 (30%), Gaps = 78/230 (33%)

Query: 8   FREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIH 65
               W D RL +N  +Y   I  L L     +W+PD+   N  +G ++     NV   + 
Sbjct: 58  MDHAWYDHRLTWNASEYSD-ISILRLR-PELIWIPDIVLQNNNDGQYNVAYFCNVL--VR 113

Query: 66  PQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFA 125
           P G V +                 P   R +C              I+V           
Sbjct: 114 PNGYVTW---------------LPPAIFRSSC-------------PINV----------- 134

Query: 126 LFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTD-DLIFLWKEGDPVQVVKN 184
                Y+                P D Q+CSLK  +     + + I +    DP    +N
Sbjct: 135 ----LYF----------------PFDWQNCSLKFTA--LNYNANEISMDLIIDPEAFTEN 172

Query: 185 -----LHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQI 229
                +H P             +      Y  +   L+ +R+  +Y+I  
Sbjct: 173 GEWEIIHKPAKKNIYGDKFPNGTN-----YQDVTFYLIIRRKPLFYVINF 217

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 45.7 bits (108), Expect = 5e-06
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 8   FREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIH 65
              QW D RL +N  +Y+G I  + +  +  +W+PD+   N  +G F      NV   ++
Sbjct: 55  IEIQWNDYRLSWNTSEYEG-IDLVRIP-SELLWLPDVVLENNVDGQFEVAYYANVL--VY 110

Query: 66  PQGSVLY 72
             GS+ +
Sbjct: 111 NDGSMYW 117

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Length = 212

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 8   FREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIH 65
            ++QW+D  LK+N  DY G +K + +  + ++W PD+   N  +G F  +    V   + 
Sbjct: 57  LKQQWVDYNLKWNPDDYGG-VKKIHIP-SEKIWRPDVVLYNNADGDFAIVKFTKVL--LD 112

Query: 66  PQGSVLYS 73
             G + ++
Sbjct: 113 YTGHITWT 120

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 8   FREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIH 65
               W D RL+++   Y+G IK L++  +  VW PD+   N  +G F   +  NV   + 
Sbjct: 56  LNLAWTDYRLQWDPAAYEG-IKDLSIP-SDDVWQPDIVLMNNNDGSFEITLHVNVL--VQ 111

Query: 66  PQGSVLY 72
             G+V +
Sbjct: 112 HTGAVSW 118

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 8   FREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIH 65
               W D RL+++   Y+G IK L++  +  VW PD+   N  +G F   +  NV ++  
Sbjct: 80  LNLAWTDYRLQWDPAAYEG-IKDLSIP-SDDVWQPDIVLMNNNDGSFEITLHVNVLVQ-- 135

Query: 66  PQGSVLYSI 74
             G+V +  
Sbjct: 136 HTGAVSWHP 144

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488

 Score = 42.4 bits (99), Expect = 7e-05
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 8   FREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIH 65
              QW D RL +N  +Y+G I  + +  +  +W+PD+   N  +G F      NV   ++
Sbjct: 55  IEIQWNDYRLSWNTSEYEG-IDLVRIP-SELLWLPDVVLENNVDGQFEVAYYANVL--VY 110

Query: 66  PQGSVLYS 73
             GS+ + 
Sbjct: 111 NDGSMYWL 118

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%)

Query: 3   SVQLTFREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
              +  R+QW+D RL++N  DY G IK + L  +  VW+PDL   N  +G F  + M  +
Sbjct: 75  ETNVRLRQQWIDVRLRWNPADYGG-IKKIRLP-SDDVWLPDLVLYNNADGDFAIVHMTKL 132

Query: 61  YIRIHPQGSVLYS 73
              +   G ++++
Sbjct: 133 L--LDYTGKIMWT 143

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* Length = 230

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 6/68 (8%)

Query: 8   FREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIH 65
            +  W+D  L+++        + + +     +W PD+   N  +              + 
Sbjct: 65  VKLSWVDTILRWDPEPPFD-FQKIEI-SPDEIWTPDIKLFNSVDLDMTLDRTTQAI--VF 120

Query: 66  PQGSVLYS 73
             G+VL+ 
Sbjct: 121 SNGTVLWI 128

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 8   FREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIH 65
               W D RL +N  +Y   I  L L     +W+PD+   N  +G ++     NV   + 
Sbjct: 79  MDHAWYDHRLTWNASEYSD-ISILRLR-PELIWIPDIVLQNNNDGQYNVAYFCNVL--VR 134

Query: 66  PQGSVLYS 73
           P G V + 
Sbjct: 135 PNGYVTWL 142

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A* Length = 204

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 9   REQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHP 66
           +  W D  L++N  +Y G +K +++   S +W+PDL   N         ++      ++ 
Sbjct: 55  QMSWTDHYLQWNVSEYPG-VKQVSVP-ISSLWVPDLAAYNAISKPE---VLTPQLALVNS 109

Query: 67  QGSVLY 72
            G V Y
Sbjct: 110 SGHVQY 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	100.0
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	100.0
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	100.0
2wn9_A	228	Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl	100.0
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	100.0
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	100.0
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	100.0
4aoe_A	205	Acetylcholine-binding protein type 2; ligand gated	100.0
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	100.0
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	100.0
4aod_A	205	Acetylcholine-binding protein type 1; ligand gated	100.0
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	100.0
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	100.0
1uw6_A	211	Acetylcholine-binding protein; pentamer, IGG fold,	100.0
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	99.98
2bj0_A	203	Acetylcholine-binding protein; 3D-structure, glyco	99.98
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	99.98
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	99.97
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	99.97
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	99.97
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	84.08
2lkg_A	140	Acetylcholine receptor; transmembrane domain, SIGN	80.32

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=100.00  E-value=6.4e-38  Score=284.44  Aligned_cols=172  Identities=53%  Similarity=0.973  Sum_probs=157.9

Q ss_pred             CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDN   79 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~   79 (232)
                      +|++++|++|+|.|+||+|||++ |+++.+++.+.++||+||++++|++++.++....++..++|++||+|.+..+    
T Consensus        48 ~~t~~~~l~~~W~D~rL~w~p~~~~~~~~l~~~~~~~IW~PDi~l~N~~~~~~~~~~~~n~~v~i~~~G~V~~~~~----  123 (347)
T 3rhw_A           48 EYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVR----  123 (347)
T ss_dssp             EEEEEEEEEEEEECGGGCSSTTCSSSCSEEECCTTCCCCCCCEECTTEEEEEECCSSSCSEEEEEETTSEEEEEEE----
T ss_pred             eEEEEEEEeeEEECcccCCCCccCCCceEEEecchhceecCCEeeeccccccccccccccEEEEEeCCCCEEEecc----
Confidence            48999999999999999999999 9999998744899999999999999988887777889999999999999999    


Q ss_pred             cccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEE
Q psy1864          80 MRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKM  159 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~  159 (232)
                                                                             +..+++|+||+++||||+|.|+|+|
T Consensus       124 -------------------------------------------------------~~~~s~C~~dl~~FPfD~Q~C~l~f  148 (347)
T 3rhw_A          124 -------------------------------------------------------ISLVLSCPMYLQYYPMDVQQCSIDL  148 (347)
T ss_dssp             -------------------------------------------------------EEEEEECCCCCTTGGGCEEEEEEEE
T ss_pred             -------------------------------------------------------eEEEEEeeeeeccCCCcceeEEEEe
Confidence                                                                   9999999999999999999999999


Q ss_pred             eeeccCcceEEEEecCCCCeeeec--cEEeCcEEEEEEEEEeeecCCCCCceEEEEEEEEEEecccceEEEEEE
Q psy1864         160 ASYGWTTDDLIFLWKEGDPVQVVK--NLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIYY  231 (232)
Q Consensus       160 ~S~~~~~~~l~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~~  231 (232)
                      +||+|+.+++.+.|.+++++...+  +|.+++|.+.+.....|....++|.|+++++.+++||+++||++|+|+
T Consensus       149 ~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~i  222 (347)
T 3rhw_A          149 ASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYI  222 (347)
T ss_dssp             EESSCCTTTEEEEECSSCSEEECTTSGGGCCSEEEEEEEEEECCEECSSCEECEEEEEEEEEECSHHHHHHTHH
T ss_pred             ccCcCChhhEEEEecCCCceeecCcceeEccceEEeeEEeeEeeeeecccceeEEEEEEEEEEEeeEEEEEeeh
Confidence            999999999999998877777666  688899999888877787777889999999999999999999988753

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B

Probab=100.00  E-value=2.4e-35  Score=252.07  Aligned_cols=156  Identities=19%  Similarity=0.417  Sum_probs=135.3

Q ss_pred             CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDN   79 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~   79 (232)
                      +|++++|++++|.|+||+|||++ ||++.++++ .++||+||++++|++++.++....  ..++|+++|+|.++.+    
T Consensus        50 ~~~~~~~~~~~W~D~rL~w~~~~~~~i~~l~~~-~~~iW~PDi~~~N~~~~~~~~~~~--~~~~v~~~G~V~~~~~----  122 (212)
T 2qc1_B           50 IVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIP-SEKIWRPDVVLYNNADGDFAIVKF--TKVLLDYTGHITWTPP----  122 (212)
T ss_dssp             EEEEEEEEEEEEECTTCCCCGGGGTTCCEEEEC-GGGSCCCCEEECCBTTTSSCEECC--CCEEEETTCEEEECCE----
T ss_pred             EEEEEEEEeeEEECCCcccChhhcCCeeEEEcc-hhhccCCceeccccccccccccce--eeEEEECCeeEEEEee----
Confidence            47899999999999999999999 999999998 999999999999999988776544  4577899999999999    


Q ss_pred             cccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEE
Q psy1864          80 MRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKM  159 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~  159 (232)
                                                                             +.++++|+|++++||||+|.|+|+|
T Consensus       123 -------------------------------------------------------~~~~~~C~mdl~~FPfD~Q~C~l~f  147 (212)
T 2qc1_B          123 -------------------------------------------------------AIFKSYCEIIVTHFPFDEQNCSMKL  147 (212)
T ss_dssp             -------------------------------------------------------EEEEEEEEECCSSSSCCEEEEEEEE
T ss_pred             -------------------------------------------------------eEEEEEccceeecCCCCceEEeEEE
Confidence                                                                   9999999999999999999999999


Q ss_pred             eeeccCcceEEEEecCCCCeee-----eccEEeCcEEEEEEEEEe-eecCCCCCceEEEEEEEEEEecc
Q psy1864         160 ASYGWTTDDLIFLWKEGDPVQV-----VKNLHLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKREF  222 (232)
Q Consensus       160 ~S~~~~~~~l~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~-~~~~~~~~~ys~l~~~l~lkR~~  222 (232)
                      +||+|+.+++.+.|..+. +..     ..+|++.++++.+....| ||+   +|.|++++++|+|||+|
T Consensus       148 ~S~~y~~~~v~l~~~~~~-~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~---~~~y~~i~~~~~l~R~p  212 (212)
T 2qc1_B          148 GTRTYDGSAVAINPESDQ-PDLSNFMESGEWVIKEARGWKHWVFYSCCP---TTPYLDITYHFVMQRLP  212 (212)
T ss_dssp             EESSCCTTTEEEEESCSS-CBCTTCCCCSSEEEEEEEEEEEEEEETTCS---SCCEEEEEEEEEEEECC
T ss_pred             EcccccCceEEEEecccc-cchhhCccCCCEEEEEeEEEEEEEecCCCC---CCCeeEEEEEEEEEECc
Confidence            999999999999998642 222     346888777776554444 443   26999999999999996

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...

Probab=100.00  E-value=3.3e-35  Score=263.71  Aligned_cols=162  Identities=20%  Similarity=0.362  Sum_probs=137.0

Q ss_pred             CeEEEEEEEeEEEccCceecCCCCCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEecccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDNM   80 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~~   80 (232)
                      +|++++|++++|.|+||+|||++.+++.+.++ .++||+||++++|++++.    ...+..++|++||+|.+..+     
T Consensus        40 ~~t~~~~l~~~W~D~rL~w~~~~~~i~~~~~~-~~~IW~PDi~l~N~~~~~----~~~~~~~~v~~~G~V~~~~~-----  109 (321)
T 3tlw_A           40 TFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYE-PEAIWIPEIRFVNVENAR----DADVVDISVSPDGTVQYLER-----  109 (321)
T ss_dssp             EEEEEEEEEEEEECGGGCCCSTTTCCSSEECC-GGGSCCCCEEESSBSSCC----EEEEEEEEECTTCEEEEEEE-----
T ss_pred             EEEEEEEEeeEEECcccCCCCccCCeeeeccc-ccCeEcCcEEeecccccc----cccceeEEEeCCccEEEecc-----
Confidence            48999999999999999999999339999998 999999999999998877    35567888999999999999     


Q ss_pred             ccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEEe
Q psy1864          81 RQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMA  160 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~~  160 (232)
                                                                            +..+++|+||+++||||+|.|+++|+
T Consensus       110 ------------------------------------------------------~~~~~~C~~dl~~FPfD~Q~C~l~f~  135 (321)
T 3tlw_A          110 ------------------------------------------------------FSARVLSPLDFRRYPFDSQTLHIYLI  135 (321)
T ss_dssp             ------------------------------------------------------EEEEEECCCCCTTTTSCEEEEEEEEE
T ss_pred             ------------------------------------------------------eEEEEEEEeecccCCCCceeEeEEEe
Confidence                                                                  99999999999999999999999999


Q ss_pred             eeccCcceEEEEecCCCCeeeec-----cEEeCcEEEEEEEEEeeecCCCCCceEEEEEEEEEEecccceEEEEE
Q psy1864         161 SYGWTTDDLIFLWKEGDPVQVVK-----NLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY  230 (232)
Q Consensus       161 S~~~~~~~l~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~  230 (232)
                      ||+|+.+++.+.|.. +++...+     +|++.+.+..+....+.+   .+|.|+++++++++||+++||++|+|
T Consensus       136 S~~y~~~~v~l~~~~-~~~~~~~~~~~~ew~l~~~~~~~~~~~~~~---~~~~y~~l~~~~~l~R~~~~y~~~~~  206 (321)
T 3tlw_A          136 VRSVDTRNIVLAVDL-EKVGKNDDVFLTGWDIESFTAVVKPANFAL---EDRLESKLDYQLRISRQYFSYIPNII  206 (321)
T ss_dssp             EECCSSCCEEEEECG-GGCEECTTCCBTTEEEEEEEEEEEEEEEEE---TTEEEEEEEEEEEEEECCTTHHHHTH
T ss_pred             cccCChhhEEEEEcC-CcccccccccccceEEEeeEeEEeeEEecC---CCCceeEEEEEEEEEEeeceeehhHH
Confidence            999999999999985 4455444     455554444333222321   24799999999999999999998875

>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...

Probab=100.00  E-value=1.7e-34  Score=250.24  Aligned_cols=160  Identities=14%  Similarity=0.264  Sum_probs=132.6

Q ss_pred             CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDN   79 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~   79 (232)
                      +|++++|++++|.|+||+|||++ ||++.++++ .++||+||++++|++++.++..   +..++|+++|+|.++.+    
T Consensus        58 ~~~~~~~l~~~W~D~rL~w~~~~y~~i~~l~~~-~~~IW~PDi~l~N~~~~~~~~~---~~~v~i~~~G~V~~~~~----  129 (228)
T 2wn9_A           58 EVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTS-AADIWTPDITAYSSTRPVQVLS---PQIAVVTHDGSVMFIPA----  129 (228)
T ss_dssp             EEEEEEEEEEEEEEEEEECCGGGGTTCCEEEEE-GGGSCCCCEEESSBSSCCEECS---CCEEEEETEEEEEECCE----
T ss_pred             EEEEEEEEEEEEECCCccCCchhcCCeeEEEec-HHHccCCceecccccccccccc---cceEEEeCCeEEEEeCC----
Confidence            47899999999999999999999 999999998 9999999999999999887663   77888999999999999    


Q ss_pred             cccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccc---cccccCcccceeEE
Q psy1864          80 MRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCP---MNLKLYPLDRQSCS  156 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~---m~l~~fPfD~Q~C~  156 (232)
                                                                             +.++++|+   |+++    |+|.|+
T Consensus       130 -------------------------------------------------------~~~~~~C~~~~mdl~----D~Q~C~  150 (228)
T 2wn9_A          130 -------------------------------------------------------QRLSFMCDPTGVDSE----EGATCA  150 (228)
T ss_dssp             -------------------------------------------------------EEEEEECCCTTTTST----TCEEEE
T ss_pred             -------------------------------------------------------EEEEEECCCCCCCCC----cCcEee
Confidence                                                                   99999999   9999    999999


Q ss_pred             eEEeeeccCcceEEEEecCCCCee-----eeccEEeCcEEEEEEEEEe-eecCCCCCceEEEEEEEEEEecccceEEEEE
Q psy1864         157 LKMASYGWTTDDLIFLWKEGDPVQ-----VVKNLHLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKREFSYYLIQIY  230 (232)
Q Consensus       157 l~~~S~~~~~~~l~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~  230 (232)
                      |+|+||+|+.+++.+.|..+ .+.     ...+|++.++++.+....| ||+    |.|++++++|+|||+++||++|++
T Consensus       151 l~f~Sw~y~~~~i~l~~~~~-~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~----~~y~~l~~~~~l~R~~~fYii~li  225 (228)
T 2wn9_A          151 VKFGSWVYSGFEIDLKTDTD-QVDLSSYYASSKYEILSATQTRQVQHYSCCP----EPYIDVNLVVKFRERRAGNGFFRN  225 (228)
T ss_dssp             EEEEESSCCTTTEEEECSCS-BCBCTTCCTTCSEEEEEEEEEEEEECCSSCS----SCEEEEEEEEEEEECC--------
T ss_pred             EEEEeecccccEEEEEecCC-ccchhhceecCCEEEEEEEEEEEEEeecCCC----CCeeEEEEEEEEEEeccceEEEEE
Confidence            99999999999999999764 222     2346888888776655544 554    699999999999999999999997


Q ss_pred             EC
Q psy1864         231 YY  232 (232)
Q Consensus       231 ~~  232 (232)
                      +.
T Consensus       226 l~  227 (228)
T 2wn9_A          226 LF  227 (228)
T ss_dssp             --
T ss_pred             Ee
Confidence            63

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*

Probab=100.00  E-value=4.3e-34  Score=243.98  Aligned_cols=151  Identities=21%  Similarity=0.349  Sum_probs=133.6

Q ss_pred             CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeecccc--CcceeeeecceEEEEcCCceEEEEeccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKE--GHFHNIIMPNVYIRIHPQGSVLYSISDL   77 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~--~~~~~~~~~~~~i~I~~~G~V~~s~~~~   77 (232)
                      +|++++|++++|.|+||+|||++ ||++.+.++ .++||+||++++|+++  +.++..     .++|+++|+|.+..+  
T Consensus        47 ~~t~~~~~~~~W~D~rL~w~~~~~~~i~~i~~~-~~~iW~PDi~~~N~~~~~~~~~~~-----~v~v~~~G~V~~~~~--  118 (204)
T 3sq6_A           47 VVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVP-ISSLWVPDLAAYNAISKPEVLTPQ-----LALVNSSGHVQYLPS--  118 (204)
T ss_dssp             EEEEEEEEEEEEECGGGCCCTTTSSSCCEEEEE-GGGSCCCCEEETTBSSCCEECSCC-----EEEEETTSEEEECCE--
T ss_pred             EEEEEEeeeeEEECCCcccChHHcCCccEEEcC-HHHCcCCCEEeEcccccCCccccc-----EEEEEeCCEEEEecC--
Confidence            47899999999999999999999 999999998 9999999999999988  555432     778899999999999  


Q ss_pred             cccccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEe
Q psy1864          78 DNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSL  157 (232)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l  157 (232)
                                                                               +.++++|+|++ .||||+|.|+|
T Consensus       119 ---------------------------------------------------------~~~~~~C~mdl-~fPfD~Q~C~l  140 (204)
T 3sq6_A          119 ---------------------------------------------------------IRQRFSCDVSG-VDTESGATCKL  140 (204)
T ss_dssp             ---------------------------------------------------------EEEEEECCCGG-GSSSSCEEEEE
T ss_pred             ---------------------------------------------------------eeEEEeccccc-cCCCCCcEEEE
Confidence                                                                     99999999999 99999999999


Q ss_pred             EEeeeccCcceEEEEecCCCCeee--eccEEeCcEEEEEEEEEe-eecCCCCCceEEEEEEEEEEec
Q psy1864         158 KMASYGWTTDDLIFLWKEGDPVQV--VKNLHLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKRE  221 (232)
Q Consensus       158 ~~~S~~~~~~~l~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~-~~~~~~~~~ys~l~~~l~lkR~  221 (232)
                      +|+||+|+.+++.+.+...+...+  ..+|++.+.++.+....| ||+    |+|+.++++|+||||
T Consensus       141 ~f~S~~y~~~~v~l~~~~~~~~~~~~~~eW~l~~~~~~~~~~~y~~c~----~~y~~i~~~~~lrRr  203 (204)
T 3sq6_A          141 KFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCK----EPYPDVTFTVTFRKK  203 (204)
T ss_dssp             EEEESSCCTTTEEEECCCCCCTTSCSSSSEEEEEEEEEEEEEECSSSS----SEEEEEEEEEEEEEC
T ss_pred             EEEeecccCeEEEEEeccCCHHHcccCCCEEEEEeEEEEEEEeeCCCC----CCcceEEEEEEEEEC
Confidence            999999999999999876554333  457999999887766655 665    589999999999997

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=100.00  E-value=9.2e-35  Score=266.97  Aligned_cols=164  Identities=23%  Similarity=0.465  Sum_probs=140.5

Q ss_pred             CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDN   79 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~   79 (232)
                      +|++++|++++|.|+||+|||++ ||++.++++ .++||+||++++|++++.++....+++  .|++||+|.++.+    
T Consensus        51 ~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~-~~~IW~PDi~~~N~~~~~~~~~~~~~~--~i~~~G~V~~~~~----  123 (369)
T 2bg9_C           51 TLTTNVWMDHAWYDHRLTWNASEYSDISILRLR-PELIWIPDIVLQNNNDGQYNVAYFCNV--LVRPNGYVTWLPP----  123 (369)
T ss_dssp             EEEEEEEEEEEEECTTTCCCCCCCCTCSCEEEC-GGGSCCCCEEETTTCSSCCBSSSSCCE--EECSSSEEEECCE----
T ss_pred             ceEEEEEEeeeeECCCcccCccccCCeeEEEec-HHhccCCcEeccccccccccccccccE--EEECCccEEEecC----
Confidence            48999999999999999999999 999999998 999999999999999988776555554  5799999999999    


Q ss_pred             cccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEE
Q psy1864          80 MRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKM  159 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~  159 (232)
                                                                             +..+++|+||+++||||+|.|+++|
T Consensus       124 -------------------------------------------------------~~~~~~C~mdl~~FPfD~Q~C~l~f  148 (369)
T 2bg9_C          124 -------------------------------------------------------AIFRSSCPINVLYFPFDWQNCSLKF  148 (369)
T ss_dssp             -------------------------------------------------------EEEEECCSCGGGSSSTTCCEEEEEE
T ss_pred             -------------------------------------------------------EEEEEECcCcccCCCCCceEeeEEE
Confidence                                                                   9999999999999999999999999


Q ss_pred             eeeccCcceEEEEecCCCCeee--eccEEeCcEEEEEEEEE-e-eecCCCCCceEEEEEEEEEEecccceEEEEEE
Q psy1864         160 ASYGWTTDDLIFLWKEGDPVQV--VKNLHLPRFTLEKFYTD-Y-CNSKTNTGAYSCLKVDLLFKREFSYYLIQIYY  231 (232)
Q Consensus       160 ~S~~~~~~~l~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~-~-~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~~  231 (232)
                      +||+|+.+++.+.| ..+..++  ..+|++.+.+..+.... | |+    +|.|++++++++|||+++||++|+|+
T Consensus       149 ~S~~y~~~~i~l~~-~~~~~~~~~~~ew~l~~~~~~~~~~~~y~~~----~~~y~~l~~~~~l~R~~~~y~~~~~i  219 (369)
T 2bg9_C          149 TALNYNANEISMDL-IIDPEAFTENGEWEIIHKPAKKNIYGDKFPN----GTNYQDVTFYLIIRRKPLFYVINFIT  219 (369)
T ss_dssp             EESSCCTTTCEEEC-CCGGGSCCTTSSEEEEECCEEEEECCCSSCS----SCCCEEEEEEEEEEECCSSHHHHHHH
T ss_pred             EEecccCceEEEEE-ecccccceeCCEEEEeeeeEEEEEEecCCCC----CCCccEEEEEEEEEEccceeEEEEcc
Confidence            99999999999998 3333333  34688777665544332 2 33    46999999999999999999988753

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=100.00  E-value=8.2e-35  Score=267.07  Aligned_cols=166  Identities=20%  Similarity=0.461  Sum_probs=141.6

Q ss_pred             CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDN   79 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~   79 (232)
                      +|++++|++++|.|+||+|||++ ||++.++++ .++||+||++++|++++.++...  +..++|++||+|.++.+    
T Consensus        49 ~~~~~~~l~~~W~D~rL~w~p~~~~~i~~l~v~-~~~IW~PDi~~~N~~~~~~~~~~--~~~~~i~~~G~V~~~~~----  121 (370)
T 2bg9_A           49 IVETNVRLRQQWIDVRLRWNPADYGGIKKIRLP-SDDVWLPDLVLYNNADGDFAIVH--MTKLLLDYTGKIMWTPP----  121 (370)
T ss_dssp             EEEEEEEEEEEECCTTSCCCTTTHHHHSSEEEE-GGGSCCCCEEETTCCCSCEESCS--SCEEEECSSCCEEECCE----
T ss_pred             ceEEEEEEeeeeECCCccCChhhcCCccEEEec-hhhccCCcEeccccccccccccc--cceEEEECCeeEEEecc----
Confidence            48999999999999999999999 999999998 99999999999999988877643  45678899999999999    


Q ss_pred             cccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEE
Q psy1864          80 MRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKM  159 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~  159 (232)
                                                                             +..+++|+||+++||||+|.|+++|
T Consensus       122 -------------------------------------------------------~~~~~~C~mdl~~FPfD~Q~C~l~f  146 (370)
T 2bg9_A          122 -------------------------------------------------------AIFKSYCEIIVTHFPFDQQNCTMKL  146 (370)
T ss_dssp             -------------------------------------------------------EEEEEECCCCTTSSSSSCEEEEEEE
T ss_pred             -------------------------------------------------------eEEEEECCCCcCCCCCCcceeeEEE
Confidence                                                                   9999999999999999999999999


Q ss_pred             eeeccCcceEEEEecCCC--Cee--eeccEEeCcEEEEEEEEEe-eecCCCCCceEEEEEEEEEEecccceEEEEEE
Q psy1864         160 ASYGWTTDDLIFLWKEGD--PVQ--VVKNLHLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKREFSYYLIQIYY  231 (232)
Q Consensus       160 ~S~~~~~~~l~~~~~~~~--~~~--~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~~  231 (232)
                      +||+|+.+++.+.|..+.  ..+  ...+|++.+.+..+....| |++   +|.|+++++++++||+++||++|+|+
T Consensus       147 ~S~~y~~~~v~l~~~~~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~---~~~y~~l~~~~~l~R~~~~y~~~~~i  220 (370)
T 2bg9_A          147 GIWTYDGTKVSISPESDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCP---DTPYLDITYHFIMQRIPLYFVVNVII  220 (370)
T ss_dssp             EESSCCTTTEEEECCCCCCSTTSCCTTCSSEEEEEEEEEEECCCSSSS---SCCCEEEEEEEEEECCCTHHHHHHHH
T ss_pred             EEecccCcEEEEEecCCCcccccccccceEEEEcceEEEEEEecCCCC---CCCeeEEEEEEEEEEccchhhhhhhh
Confidence            999999999999987642  111  2346888777665543333 443   36899999999999999999988753

>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}

Probab=100.00  E-value=3e-33  Score=240.71  Aligned_cols=152  Identities=18%  Similarity=0.369  Sum_probs=131.6

Q ss_pred             CeEEEEEEEeEEEccCceecCCCCCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEecccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDNM   80 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~~   80 (232)
                      +|++++|++++|.|+||+|||+-||++.++++ .++||+||++++|++....   ...+..++|+++|+|.++.+     
T Consensus        49 ~~~~~~wl~~~W~D~rL~W~~~~~~i~~i~v~-~~~IW~PDi~l~N~~~~~~---~~~~~~v~v~~~G~V~~~~~-----  119 (205)
T 4aoe_A           49 QVELGLWLVISWKDRSLSWSNECTTFNELTLP-SKYIWLPHIEVYNSIGKPG---IHSDQLVRVYKDGTVTFVPQ-----  119 (205)
T ss_dssp             EEEEEEEEEEEEECCCCCCSCCCSCCCEEEEE-GGGSCCCCCEETTBSSCCE---ECSCCEEEEETTSEEEECCE-----
T ss_pred             EEEEEEEEEEEEECCccccCCcCCCccEEEeC-HHHhccccEEEeccccccc---cccceEEEEeCCcEEEEeCc-----
Confidence            37899999999999999999733999999998 9999999999999885443   23456788899999999999     


Q ss_pred             ccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEEe
Q psy1864          81 RQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMA  160 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~~  160 (232)
                                                                            +.++++|+|+ ..||||+|.|+|+||
T Consensus       120 ------------------------------------------------------~~~~s~C~~d-~~fPfD~Q~C~l~fg  144 (205)
T 4aoe_A          120 ------------------------------------------------------YTIRFSCALE-NVTTEQGAACTLKFG  144 (205)
T ss_dssp             ------------------------------------------------------EEEEEECCCT-TSSSSSCEEEEEEEE
T ss_pred             ------------------------------------------------------EEEEEecccC-cCCCccCCeEEEEEE
Confidence                                                                  9999999999 899999999999999


Q ss_pred             eeccCcceEEEEecCC-CCeee--eccEEeCcEEEEEEEEEe-eecCCCCCceEEEEEEEEEEe
Q psy1864         161 SYGWTTDDLIFLWKEG-DPVQV--VKNLHLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKR  220 (232)
Q Consensus       161 S~~~~~~~l~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~-~~~~~~~~~ys~l~~~l~lkR  220 (232)
                      ||+|+.+++.+.+.++ +...+  ..+|++.+.++.+....| ||++    +|+.++|+|+|||
T Consensus       145 Sw~y~~~~l~l~~~~~~dl~~~~~n~EW~l~~~~~~r~~~~Y~CC~~----~y~dit~~i~lrR  204 (205)
T 4aoe_A          145 PWTYDVRDLVLDESQQVDLTTYAGGERFQLIEAKQKVNKKTYPCCPQ----SFEDIELRVTFKK  204 (205)
T ss_dssp             CSSCCTTTEEEECSSSCBCTTSCTTCSEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEEEE
T ss_pred             CccCChheEEEecCcccchhccccCCcEEEEeeEEEEEEEEeCCCCC----CcceEEEEEEEEE
Confidence            9999999999976543 21222  347999999998877777 8875    8999999999999

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=100.00  E-value=9.4e-35  Score=267.00  Aligned_cols=162  Identities=21%  Similarity=0.424  Sum_probs=138.7

Q ss_pred             CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDN   79 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~   79 (232)
                      +|++++|++++|.|+||+|||++ ||++.++++ .++||+||++++|++++.++.....+  +.|++||+|.++.+    
T Consensus        49 ~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~-~~~IW~PDi~~~N~~~~~~~~~~~~~--~~v~~~G~V~~~~~----  121 (370)
T 2bg9_B           49 EMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIP-SDDVWQPDIVLMNNNDGSFEITLHVN--VLVQHTGAVSWHPS----  121 (370)
T ss_dssp             EEEEEEECEEEEECTTSCCCTTTTSSCSEEEEE-SSSSCCCCEEESSCCCSCEESSSSCE--EEEETTSEEEECCE----
T ss_pred             ceEEEEEEeeeeECcccCcCccccCCeeEEEec-hhhccCCCccccccccccccccccce--EEEeCCceEEEEec----
Confidence            48999999999999999999999 999999998 99999999999999998877655555  45799999999999    


Q ss_pred             cccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEE
Q psy1864          80 MRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKM  159 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~  159 (232)
                                                                             +..+++|+||+++||||+|.|+++|
T Consensus       122 -------------------------------------------------------~~~~~~C~mdl~~FPfD~Q~C~l~f  146 (370)
T 2bg9_B          122 -------------------------------------------------------AIYRSSCTIKVMYFPFDWQNCTMVF  146 (370)
T ss_dssp             -------------------------------------------------------EEEEECCCCTTCSSSTTCCCCEEEE
T ss_pred             -------------------------------------------------------ceEEEEccCcccCCCCCceeeeEEE
Confidence                                                                   9999999999999999999999999


Q ss_pred             eeeccCcceEEEEecCCCCee---e--eccEEeCcEEEEEEEEEeeecCCCCCceEEEEEEEEEEecccceEEEEE
Q psy1864         160 ASYGWTTDDLIFLWKEGDPVQ---V--VKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY  230 (232)
Q Consensus       160 ~S~~~~~~~l~~~~~~~~~~~---~--~~~~~l~~~~~~~~~~~~~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~  230 (232)
                      +||+|+.+++.+.|..++.+.   +  ..+|++.+.+..+.  ..|+    +|.|+++++++++||+++||++|+|
T Consensus       147 ~S~~y~~~~i~l~~~~~~~~~~~~~~~~~eW~l~~~~~~~~--y~~~----~~~y~~l~~~~~l~R~~~~y~~~~~  216 (370)
T 2bg9_B          147 KSYTYDTSEVILQHALDAMINQDAFTENGQWSIEHKPSRKN--WRSD----DPSYEDVTFYLIIQRKPLFYIVYTI  216 (370)
T ss_dssp             EESSCCBTSCEEECSCCCCCSTTSCCTTCSSEECCCCEEEC--CCTT----SSSBCCEEEECCEECCCCSSHHHHH
T ss_pred             EeccccccEEEEEeccCCccccccccccceEEEeccceEEe--ecCC----CCCccEEEEEEEEEEcccceeeeec
Confidence            999999999999992222222   2  34688887765443  1132    4799999999999999999998875

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=100.00  E-value=7.4e-35  Score=267.37  Aligned_cols=165  Identities=20%  Similarity=0.409  Sum_probs=139.6

Q ss_pred             CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDN   79 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~   79 (232)
                      +|++++|++++|.|+||+|||++ ||++.++++ .++||+||++++|++++.++....+++.  |++||+|.++.+    
T Consensus        48 ~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~-~~~IW~PDi~~~N~~~~~~~~~~~~~~~--v~~~G~V~~~~~----  120 (370)
T 2bg9_E           48 ALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIP-SELLWLPDVVLENNVDGQFEVAYYANVL--VYNDGSMYWLPP----  120 (370)
T ss_dssp             EEEEEEEEEEEEECGGGCCCTTTTTTCSCBCCC-GGGSCCCCEEESSSCCSCCBSSSSCCCE--ECSSSEEEECCE----
T ss_pred             ceeEeEEEeeEEECCCcCCChhhcCCeeEEeec-hhccCCCCEeeccccCCcccccccccEE--EECCccEEEecC----
Confidence            48999999999999999999999 999999998 8999999999999999888766556654  699999999999    


Q ss_pred             cccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEE
Q psy1864          80 MRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKM  159 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~  159 (232)
                                                                             +.++++|+||+++||||+|.|+++|
T Consensus       121 -------------------------------------------------------~~~~~~C~mdl~~FPfD~Q~C~l~f  145 (370)
T 2bg9_E          121 -------------------------------------------------------AIYRSTCPIAVTYFPFDWQNCSLVF  145 (370)
T ss_dssp             -------------------------------------------------------EEEEECCCCSSCSSSSSCCBCCEEE
T ss_pred             -------------------------------------------------------EEEEEECcccccCCCCCeEEEEEEE
Confidence                                                                   9999999999999999999999999


Q ss_pred             eeeccCcceEEEEecCCCCee---e--eccEEeCcEEEEEEEEE-e-eecCCCCCceEEEEEEEEEEecccceEEEEEE
Q psy1864         160 ASYGWTTDDLIFLWKEGDPVQ---V--VKNLHLPRFTLEKFYTD-Y-CNSKTNTGAYSCLKVDLLFKREFSYYLIQIYY  231 (232)
Q Consensus       160 ~S~~~~~~~l~~~~~~~~~~~---~--~~~~~l~~~~~~~~~~~-~-~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~~  231 (232)
                      +||+|+.+++.+.|..++.+.   +  ..+|++.+.+..+.... | |+    +|.|+++++++++||+++||++|+|+
T Consensus       146 ~S~~y~~~~i~l~~~~~~~~~~~~~~~~~eW~l~~~~~~~~~~~~y~~~----~~~y~~l~~~~~l~R~~~~y~~~~~i  220 (370)
T 2bg9_E          146 RSQTYNAHEVNLQLSAEEGIDPEDFTENGEWTIRHRPAKKNYNWQLTKD----DIDFQEIIFFLIIQRKPLFYIINIIA  220 (370)
T ss_dssp             EESSSCTTSCCEECCCSCCCGGGSCCTTSSEEEEECCCCEECCCCTTCC----CSCCCEEEECCEEEECCCSSHHHHHH
T ss_pred             EeeccccceeEEEecCCCcccHhhcccccEEEEecceeEEEEEecccCC----CCCCcEEEEEEEEEEccCceeEEEeh
Confidence            999999999999998753222   2  23577665544332221 2 22    47999999999999999999988753

>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}

Probab=100.00  E-value=5e-33  Score=238.87  Aligned_cols=152  Identities=22%  Similarity=0.366  Sum_probs=131.6

Q ss_pred             CeEEEEEEEeEEEccCceecCCCCCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEecccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDNM   80 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~~   80 (232)
                      ++++++|++++|.|+||+||++-|||+.++++ .++||+||++++|++++..   ...+..++|+++|+|.++.+     
T Consensus        49 ~~t~~~wl~~~W~D~rL~W~~~~~~i~~i~v~-~~~IW~PDi~l~N~~~~~~---~~~~~~~~v~~~G~V~~~~~-----  119 (205)
T 4aod_A           49 EVDIGLWTTLVWKDRCLNWFNEFTSFKELTVP-IAEIWTPDIFIFDSVGAPE---IFSDKLARVSQDGTVTYVPQ-----  119 (205)
T ss_dssp             EEEEEEEEEEEEECCCCCCSCCCSCCCEEEEE-GGGSCCCCEEETTBSSCCE---ECSCCEEEEETTSEEEECCE-----
T ss_pred             EEEEEEEEEEEEECCceeeCCcCCCccEeecc-HHhcCcCCEEEEcccccce---eecceEEEEecCCEEEEecc-----
Confidence            47899999999999999999733999999998 9999999999999986542   23455678899999999999     


Q ss_pred             ccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEEe
Q psy1864          81 RQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMA  160 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~~  160 (232)
                                                                            +.++++|+|++..|||| |.|+|+|+
T Consensus       120 ------------------------------------------------------~~~~s~C~~d~~~fPfD-Q~C~l~fg  144 (205)
T 4aod_A          120 ------------------------------------------------------LKVRLSCPLADLKLETG-VTCSLKSG  144 (205)
T ss_dssp             ------------------------------------------------------EEEEEECCCTTSSSSSC-EEEEEEEE
T ss_pred             ------------------------------------------------------EEEEEEecCccccCCCC-cEEEEEEE
Confidence                                                                  99999999999999999 99999999


Q ss_pred             eeccCcceEEEEecCCC-Ceee--eccEEeCcEEEEEEEEEe-eecCCCCCceEEEEEEEEEEe
Q psy1864         161 SYGWTTDDLIFLWKEGD-PVQV--VKNLHLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKR  220 (232)
Q Consensus       161 S~~~~~~~l~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~-~~~~~~~~~ys~l~~~l~lkR  220 (232)
                      ||+|+++++.+.+.++- ...+  ..+|++.+.++.+....| ||+.    +|+.++++|+|||
T Consensus       145 Sw~y~~~~i~l~~~~~~dl~~~~~n~EW~l~~~~~~~~~~~Y~cc~~----~Y~~it~~~~lrR  204 (205)
T 4aod_A          145 SWTHSTQELTLEVNAKVDLGDYASDTRFQLLNATQQVNRKQYPCCPE----TYEDTTLSFTFRK  204 (205)
T ss_dssp             ESSCCTTTEEEECSSSCBCTTSCTTCSSEEEEEEEEEEEEEETTEEE----EEEEEEEEEEEEC
T ss_pred             CccccccEEEEEECCCcccccccccCCEEEEeeEEEEEEEEeCCCCC----CcceEEEEEEEEC
Confidence            99999999999987642 1222  347999999998877776 8864    9999999999976

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}

Probab=100.00  E-value=3e-33  Score=239.08  Aligned_cols=155  Identities=18%  Similarity=0.286  Sum_probs=120.8

Q ss_pred             CeEEEEEEEeEEEccCceecCCCCCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEecccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDNM   80 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~~   80 (232)
                      +|++++|++++|.|+||+|||+++|+..+.++ .++||+||++++|+++...    ..+..++|+++|+|.++.+     
T Consensus        36 ~~t~~~~l~~~W~D~rL~w~~~~~~i~~~~~~-~~~IW~PDi~l~N~~~~~~----~~~~~v~v~~~G~V~~~~~-----  105 (201)
T 3igq_A           36 TFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYE-PEAIWIPEIRFVNVENARD----ADVVDISVSPDGTVQYLER-----  105 (201)
T ss_dssp             EEEEEEEEEEEEECGGGCCCHHHHTCSCEECC-GGGSCCCCEEESSBSSSCE----EEEEEEEECTTCEEEEEEE-----
T ss_pred             EEEEEEEEeeEEECCccCCCCcCCCEeEeccc-ccCcCccCEEEEccccccc----ccceEEEEeCCCcEEEecc-----
Confidence            48999999999999999999988789999998 9999999999999976542    4567888999999999999     


Q ss_pred             ccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEEe
Q psy1864          81 RQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMA  160 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~~  160 (232)
                                                                            +.++++|+|+++.||||+|.|+|+|+
T Consensus       106 ------------------------------------------------------~~~~s~C~mdl~~FPfD~Q~C~l~f~  131 (201)
T 3igq_A          106 ------------------------------------------------------FSARVLSPLDGRRTESDSQTLHIYLI  131 (201)
T ss_dssp             ------------------------------------------------------EEEEEECCCC------CEEEEEEEEE
T ss_pred             ------------------------------------------------------eeEEEecCcccccCCCCccEeeEEEe
Confidence                                                                  99999999999999999999999999


Q ss_pred             eeccCcceEEEEecCCCCeeeec-----cEEeCcEEEEEEEEEe-eecCCCCCceEEEEEEEEEEecccc
Q psy1864         161 SYGWTTDDLIFLWKEGDPVQVVK-----NLHLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKREFSY  224 (232)
Q Consensus       161 S~~~~~~~l~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~-~~~~~~~~~ys~l~~~l~lkR~~~y  224 (232)
                      ||+|+.+++.+.|.. +++...+     +|++.++++.+....| ||++    +|+.++|.|.+||+-+-
T Consensus       132 S~~y~~~~v~l~~~~-~~~~~~~~~~~~ew~l~~~~~~~~~~~y~cc~~----~y~~i~f~i~irR~~~~  196 (201)
T 3igq_A          132 VRSVDTRNIVLAVDL-EKVGKNDDVFLTGWDIESFTAVVKPANFALEDR----LESKLDYQLRISRQGGH  196 (201)
T ss_dssp             ECCCSSCCEEEEECG-GGCEESCSEEETTEEEEEEEEEEEC------------CCCEEEEEEEEEEC---
T ss_pred             ccCCCceEEEEEecC-CccccccCcccCCeEEEeeEEEEEEEEeCCCCC----ccCeEEEEEEEEECCCC
Confidence            999999999999976 3344433     4666655555444333 7764    89999999999999764

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*

Probab=100.00  E-value=3.5e-33  Score=243.54  Aligned_cols=156  Identities=16%  Similarity=0.274  Sum_probs=129.4

Q ss_pred             CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDN   79 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~   79 (232)
                      +|++++|++++|.|+||+|||++ ||++.++++ .++||+||++++|++++.++...  ...++|+++|+|.++.+    
T Consensus        58 ~~t~~~~l~~~W~D~rL~wnp~~~~~i~~i~l~-~~~IW~PDi~l~N~~~~~~~~~~--~~~v~v~~~G~V~~~~~----  130 (230)
T 4afh_A           58 IGTFKAIVKLSWVDTILRWDPEPPFDFQKIEIS-PDEIWTPDIKLFNSVDLDMTLDR--TTQAIVFSNGTVLWIPP----  130 (230)
T ss_dssp             EEEEEEEEEEEEECGGGCCCCCTTSCCSEEEEC-GGGSCCCCEEETTCSSSSCEECT--TSCEEEETTSEEEECCE----
T ss_pred             EEEEEEEEeeEEECccccCCcccCCCeeEEEec-cCCEECCcEEEEecccccccccc--cceEEEEcCCEEEEecC----
Confidence            47899999999999999999999 999999998 99999999999999998876533  34567899999999999    


Q ss_pred             cccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEE
Q psy1864          80 MRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKM  159 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~  159 (232)
                                                                             +.++++|+|     |||+|.|+|+|
T Consensus       131 -------------------------------------------------------~~~~s~C~m-----PfD~Q~C~l~f  150 (230)
T 4afh_A          131 -------------------------------------------------------AVLKVLCVS-----QDDVDSCHFQF  150 (230)
T ss_dssp             -------------------------------------------------------EEEEEEEEE-----ETTEEEEEEEE
T ss_pred             -------------------------------------------------------EEEEEECCC-----CCCcccCCEee
Confidence                                                                   999999999     99999999999


Q ss_pred             eeeccCcceEEEEecCCC----C-eeeeccEEeCcEEEEEEEEEe-eecCCCCCceEEEEEEEEEEecccceEEE
Q psy1864         160 ASYGWTTDDLIFLWKEGD----P-VQVVKNLHLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKREFSYYLIQ  228 (232)
Q Consensus       160 ~S~~~~~~~l~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ys~l~~~l~lkR~~~yYli~  228 (232)
                      +||+|+.+++.+.|..+.    . ..... |++.+..+.+....| ||+    ++|+.++|+|+|||+++||+++
T Consensus       151 ~S~~y~~~~v~l~~~~~~~~~d~~~~~n~-W~l~~~~~~~~~~~y~cc~----~~y~~i~f~~~irRrpl~~~~~  220 (230)
T 4afh_A          151 GSWVYSVDEVDIHFMDDKAEVLLDFYQDS-LEILENSAQRQEVVYPCCE----SAYVEMKYLLALRSENGNSTYS  220 (230)
T ss_dssp             EESSCCTTTEEEEEGGGCCSCBCTTCCCC-CCEEEEEEEEEEECCTTCS----SCEEEEEEEEEEECC-------
T ss_pred             ccccccCceEEEEECCCCcccceeeecCc-EEEEEEEEEEEEEecCCCC----CCccEEEEEEEEEEeechhhcc
Confidence            999999999999997632    1 11234 998888887665554 665    4899999999999999999986

>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*

Probab=100.00  E-value=1.7e-32  Score=234.32  Aligned_cols=153  Identities=22%  Similarity=0.391  Sum_probs=128.6

Q ss_pred             CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDN   79 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~   79 (232)
                      +|++++|++++|.|+||+|||++ |+  .++++ .++||+||++++|++++. . .... ..++|+++|+|.++.+    
T Consensus        48 ~~~~~~~~~~~W~D~rL~w~~~~~~~--~l~~~-~~~iW~PDi~~~N~~~~~-~-~~~~-~~~~i~~~G~V~~~~~----  117 (211)
T 1uw6_A           48 EVDVVFWQQTTWSDRTLAWNSSHSPD--QVSVP-ISSLWVPDLAAYNAISKP-E-VLTP-QLARVVSDGEVLYMPS----  117 (211)
T ss_dssp             EEEEEEEEEEEEECGGGCCCCTTSCS--EEEEE-GGGSCCCCEEETTBCSCC-E-ECSC-CEEEEETTSEEEECCE----
T ss_pred             EEEEEEEEEeEeECcccccChhhcCC--eEEcc-HHHccCCCEeeecccccc-c-ccee-eEEEEeCCceEEEeCC----
Confidence            47899999999999999999999 77  89998 999999999999999887 3 3333 7888999999999999    


Q ss_pred             cccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccc---cccccCcccceeEE
Q psy1864          80 MRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCP---MNLKLYPLDRQSCS  156 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~---m~l~~fPfD~Q~C~  156 (232)
                                                                             +.++++|+   |+++    |+|.|+
T Consensus       118 -------------------------------------------------------~~~~~~C~~~~mdl~----D~Q~C~  138 (211)
T 1uw6_A          118 -------------------------------------------------------IRQRFSCDVSGVDTE----SGATCR  138 (211)
T ss_dssp             -------------------------------------------------------EEEEEECCCTTTTSS----SCEEEE
T ss_pred             -------------------------------------------------------EEEEEECCCCCCCCC----cceEeE
Confidence                                                                   99999999   9999    999999


Q ss_pred             eEEeeeccCcceEEEEecCCCCeee------eccEEeCcEEEEEEEEEe-eecCCCCCceEEEEEEEEEEecccceEE
Q psy1864         157 LKMASYGWTTDDLIFLWKEGDPVQV------VKNLHLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKREFSYYLI  227 (232)
Q Consensus       157 l~~~S~~~~~~~l~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~-~~~~~~~~~ys~l~~~l~lkR~~~yYli  227 (232)
                      |+|+||+|+.+++.+.|..+ ++..      ..+|++.+.++.+....| ||+    |.|++++++|+|||+++||++
T Consensus       139 l~f~S~~y~~~~i~l~~~~~-~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~----~~y~~l~~~~~l~R~~~yyil  211 (211)
T 1uw6_A          139 IKIGSWTHHSREISVDPTTE-NSDDSEYFSQYSRFEILDVTQKKNSVTYSCCP----EAYEDVEVSLNFRKKGRSEIL  211 (211)
T ss_dssp             EEEEESSCCTTTEEEEECCC-SSCTTTTSCTTSSEEEEEEEEEEEEEECTTCS----SEEEEEEEEEEEEECCCC---
T ss_pred             EEEEcccccCceEEEEeccc-ccchhhhcccCCCEEEEeeEEEEEEEEeCCCC----CCcceEEEEEEEEEccceeEC
Confidence            99999999999999999764 2322      346777777665544444 554    699999999999999999985

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A

Probab=99.98  E-value=1.6e-33  Score=267.05  Aligned_cols=166  Identities=20%  Similarity=0.478  Sum_probs=140.8

Q ss_pred             CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDN   79 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~   79 (232)
                      +|++++|++++|.|+||+|||++ ||++.++++ .++||+||++++|++++.++.....  .++|++||+|.++.+    
T Consensus        73 ~~t~~~~l~~~W~D~rL~Wnp~~y~gi~~l~vp-~~~IW~PDi~l~N~~d~~~~~~~~~--~v~v~~dG~V~~~~~----  145 (461)
T 4aq5_A           73 IVETNVRLRQQWIDVRLRWNPADYGGIKKIRLP-SDDVWLPDLVLYNNADGDFAIVHMT--KLLLDYTGKIMWTPP----  145 (461)
T ss_dssp             EEEEEEEEEEEECCTTCBCCTTTHHHHSSEEEE-GGGSCCCCEEESSCCCSCCTTCSSC--EEEECSBCCEEECCE----
T ss_pred             EEEEEEEEeeeeECcccCCChhhcCCccEEEec-CCCEECCceeeeccccccccccccc--ceEEcCCccEEEecc----
Confidence            48999999999999999999999 999999998 9999999999999999887754443  467899999999999    


Q ss_pred             cccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEE
Q psy1864          80 MRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKM  159 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~  159 (232)
                                                                             +..+++|+||+++||||+|.|+++|
T Consensus       146 -------------------------------------------------------~~~~s~C~mdl~~FPfD~Q~C~l~f  170 (461)
T 4aq5_A          146 -------------------------------------------------------AIFKSYCEIIVTHFPFDQQNCTMKL  170 (461)
T ss_dssp             -------------------------------------------------------EEEEEECCCCGGGSSSSCEEEEEEE
T ss_pred             -------------------------------------------------------ccccccccccccCCCCccCccCeEE
Confidence                                                                   9999999999999999999999999


Q ss_pred             eeeccCcceEEEEecCCC--Ceee--eccEEeCcEEEEEEEEEe-eecCCCCCceEEEEEEEEEEecccceEEEEEE
Q psy1864         160 ASYGWTTDDLIFLWKEGD--PVQV--VKNLHLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKREFSYYLIQIYY  231 (232)
Q Consensus       160 ~S~~~~~~~l~~~~~~~~--~~~~--~~~~~l~~~~~~~~~~~~-~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~~  231 (232)
                      +||+|+.+++.+.+....  ..++  ..+|++.+.+..+....| |+.   +++|+++++++++||+++||++|+|+
T Consensus       171 ~S~~y~~~~v~l~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~y~~~~---~~~y~~l~~~~~l~R~~~~Y~i~l~i  244 (461)
T 4aq5_A          171 GIWTYDGTKVSISPESDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCP---DTPYLDITYHFIMQRIPLYFVVNVII  244 (461)
T ss_dssp             EESSCCTTTEEEECCCCCCSGGGCCTTCSSEEEEEEEEEEECCCSSSS---SCCCEEEEEEEEEECCCTHHHHHHHH
T ss_pred             eccccCCceEEEEeccccccHHhhhccCceEEeeeeeEEEEEeecCcC---CCCcceEEEEEEEEecccceeeehhh
Confidence            999999999999976532  1122  346888877765544433 332   13899999999999999999988763

>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}

Probab=99.98  E-value=4.1e-32  Score=230.72  Aligned_cols=150  Identities=19%  Similarity=0.381  Sum_probs=128.9

Q ss_pred             CeEEEEEEEeEEEccCc-eecCCCCCeeEEEeccCCceecCcEEeecc-ccCcceeeeecceEEEEcCCceEEEEecccc
Q psy1864           1 EYSVQLTFREQWLDERL-KYNDYDGRIKYLTLTEASRVWMPDLFFSNE-KEGHFHNIIMPNVYIRIHPQGSVLYSISDLD   78 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL-~wn~~~g~i~~l~l~~~~~iW~Pdi~~~N~-~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~   78 (232)
                      +|++++|++++|.|+|| +|||++ |++.+.++ .++||+||++++|+ +++.++..    ..++|+++|+|.++.+   
T Consensus        45 ~~~~~~~~~~~W~D~rL~~w~~~~-~i~~~~~~-~~~iW~PDi~~~N~~~~~~~~~~----~~v~i~~~G~V~~~~~---  115 (203)
T 2bj0_A           45 QVEVVLWTQASWKVPYYSSLLSSS-SLDQVSLP-VSKMWTPDLSFYNAIAAPELLSA----DRVVVSKDGSVIYVPS---  115 (203)
T ss_dssp             EEEEEEEEEEEEECGGGGGGTTTS-SCSEEEEE-GGGSCCCCEEETTCSSCCEECSC----CEEEEETTSEEEECCE---
T ss_pred             EEEEEEEEEeEEECcchhccCccC-CceEEEEc-hhhccCCCccccccccccccccc----eEEEEeCCcEEEEecc---
Confidence            48899999999999999 999998 99999998 99999999999999 98887764    6778899999999999   


Q ss_pred             ccccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEecccc-ccccCcccceeEEe
Q psy1864          79 NMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPM-NLKLYPLDRQSCSL  157 (232)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m-~l~~fPfD~Q~C~l  157 (232)
                                                                              +.++++|+| ++++  ||+|.|+|
T Consensus       116 --------------------------------------------------------~~~~~~C~m~dl~~--fD~Q~C~l  137 (203)
T 2bj0_A          116 --------------------------------------------------------QRVRFTCDLINVDT--EPGATCRI  137 (203)
T ss_dssp             --------------------------------------------------------EEEEEECCCTTTTS--SSCEEEEE
T ss_pred             --------------------------------------------------------eEEEEEccccccCc--cccceeeE
Confidence                                                                    999999999 9998  99999999


Q ss_pred             EEeeeccCcceEEEEecCCCCeeee-----ccEEeCcEEEEEEEEEe-eecCCCCCceEEEEEEEEEEec
Q psy1864         158 KMASYGWTTDDLIFLWKEGDPVQVV-----KNLHLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKRE  221 (232)
Q Consensus       158 ~~~S~~~~~~~l~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~-~~~~~~~~~ys~l~~~l~lkR~  221 (232)
                      +|+||+|+.+++.+.|..+.++...     .+|++.+++..+....| ||    +|.|++++++|+|||+
T Consensus       138 ~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~----~~~y~~l~~~~~l~R~  203 (203)
T 2bj0_A          138 KVGSWTHDNKQFALITGEEGVVNIAEYFDSPKFDLLSATQSLNRKKYSCC----ENMYDDIEITFAFRKK  203 (203)
T ss_dssp             EEEESSCCTTTEEEEECTTTTSCTTTTCCCSSEEEEEEEEEEEEEECTTC----SSEEEEEEEEEEEEEC
T ss_pred             EEEcccccCcEEEEEecCCCccchhcceecCCEEEEEeEEEEEEEecCCC----CCCeeEEEEEEEEEEC
Confidence            9999999999999999764324433     35666666655444444 44    3699999999999997

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C

Probab=99.98  E-value=3.1e-33  Score=268.62  Aligned_cols=166  Identities=22%  Similarity=0.448  Sum_probs=137.6

Q ss_pred             CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDN   79 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~   79 (232)
                      +|++++|++++|.|+||+|||++ ||++.++++ .++||+||++++|++++.++.....++.  |+++|+|.|..+    
T Consensus        72 ~~t~~vwl~q~W~D~RL~Wnp~~y~gi~~l~vp-~~~IW~PDi~l~N~~d~~~~~~~~~nv~--V~~dG~V~~~~~----  144 (522)
T 4aq5_C           72 TLTTNVWMDHAWYDHRLTWNASEYSDISILRLR-PELIWIPDIVLQNNNDGQYNVAYFCNVL--VRPNGYVTWLPP----  144 (522)
T ss_dssp             EEEEEEEEEEEEECTTCCCCCCCCCTCSCEEEC-GGGSCCCCEEETTTCSSCCBSCSSCCEE--ECSSSEEEECCE----
T ss_pred             EEEEEEEEeeeEeCcccCCCchhcCCceEEeec-cCCEECCcEeccccccCCccccccceEE--EeCCccEEEEcc----
Confidence            48999999999999999999999 999999998 9999999999999999988776666654  699999999999    


Q ss_pred             cccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEE
Q psy1864          80 MRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKM  159 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~  159 (232)
                                                                             +..+++|+||+++||||+|.|+|+|
T Consensus       145 -------------------------------------------------------~~~~ssC~mdl~~FPfD~Q~C~L~f  169 (522)
T 4aq5_C          145 -------------------------------------------------------AIFRSSCPINVLYFPFDWQNCSLKF  169 (522)
T ss_dssp             -------------------------------------------------------EEEEECCCCTTTSCSTTCCEEEEEE
T ss_pred             -------------------------------------------------------cccccccccccCcCCCcCceEeEEE
Confidence                                                                   9999999999999999999999999


Q ss_pred             eeeccCcceEEEEecCCCC----------------eeeeccEEeCcEEEEEEEEE-eeecCCCCCceEEEEEEEEEEecc
Q psy1864         160 ASYGWTTDDLIFLWKEGDP----------------VQVVKNLHLPRFTLEKFYTD-YCNSKTNTGAYSCLKVDLLFKREF  222 (232)
Q Consensus       160 ~S~~~~~~~l~~~~~~~~~----------------~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~ys~l~~~l~lkR~~  222 (232)
                      +||+|+.+++.+.|..+++                .....+|++.+.+..+.... +|+   .++.|++++++|++||++
T Consensus       170 ~S~~Y~~~~v~l~~~~~~~~~~~~~~~~~~~d~~~f~~~gEW~l~~~~~~~~~~~~~~~---~~~~y~~l~~~~~lrR~~  246 (522)
T 4aq5_C          170 TALNYNANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEIIHKPAKKNIYGDKFP---NGTNYQDVTFYLIIRRKP  246 (522)
T ss_dssp             EETTCCTTTCCEEC---------------CCSTTSCCTTCSEEEEECCEEEEECCCSSC---SSCCCEEEEEEEEEEECC
T ss_pred             ecccccCceeEEEeccCcccccCccceeeeccHHHceecceEEEeeeEEEEEeeecccc---CCCCcceEEEEEEEeccc
Confidence            9999999999999876431                11123577766554433222 233   245799999999999999


Q ss_pred             cceEEEEEE
Q psy1864         223 SYYLIQIYY  231 (232)
Q Consensus       223 ~yYli~i~~  231 (232)
                      +||++|+|+
T Consensus       247 ~~Yii~l~i  255 (522)
T 4aq5_C          247 LFYVINFIT  255 (522)
T ss_dssp             SSHHHHHHH
T ss_pred             ceeeeehhh
Confidence            999988763

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*

Probab=99.97  E-value=7.8e-33  Score=248.41  Aligned_cols=163  Identities=22%  Similarity=0.325  Sum_probs=132.1

Q ss_pred             CeEEEEEEEeEEEccCceecCCCCCeeEEEecc-------CCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEE
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTE-------ASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYS   73 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~g~i~~l~l~~-------~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s   73 (232)
                      +|++++|++++|.|+||+|+    +++.+++++       .++||+||++++|++++..    ..+..++|++||+|.+.
T Consensus        32 ~~t~~~~l~~~W~D~rL~~~----~~~~l~l~~~~~~~ip~~~IW~Pdi~l~N~~~~~~----~~~~~~~i~~~G~V~~~  103 (322)
T 3rqw_A           32 TYKVDGYIVAQWTGKPRKTP----GDKPLIVENTQIERWINNGLWVPALEFINVVGSPD----TGNKRLMLFPDGRVIYN  103 (322)
T ss_dssp             EEEEEEEEEEEEECSCCCCS----TTSCEEEETHHHHHHHHTTCCCCCEEETTBSSCCE----EEEEEEEECTTSEEEEE
T ss_pred             EEEEEEEEeeEEechhhCCC----CCCceeecchhhcccccccccCCcEEEEcccCccc----ccceeEEEeCCcCEEEe
Confidence            48999999999999999994    577765431       8999999999999998876    56678889999999999


Q ss_pred             eccccccccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccce
Q psy1864          74 ISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQ  153 (232)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q  153 (232)
                      .+                                                           +..+++|+||+++||||+|
T Consensus       104 ~~-----------------------------------------------------------~~~~~~C~~dl~~FPfD~Q  124 (322)
T 3rqw_A          104 AR-----------------------------------------------------------FLGSFSNDMDFRLFPFDRQ  124 (322)
T ss_dssp             EE-----------------------------------------------------------EEEEEECCCCCTTTTSCEE
T ss_pred             ec-----------------------------------------------------------eeEEEeccccccCCCCCCc
Confidence            99                                                           9999999999999999999


Q ss_pred             eEEeEEeeeccCcceEEEEecCCCC----eeeeccEEe-CcEEEEEEEEEe-eecCCC--CCceEEEEEEEEEEecccce
Q psy1864         154 SCSLKMASYGWTTDDLIFLWKEGDP----VQVVKNLHL-PRFTLEKFYTDY-CNSKTN--TGAYSCLKVDLLFKREFSYY  225 (232)
Q Consensus       154 ~C~l~~~S~~~~~~~l~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~-~~~~~~--~~~ys~l~~~l~lkR~~~yY  225 (232)
                      .|+++|+||+|+.+++.+.|.++..    .....+|++ .+++.......| +....+  +|.|+++++++++||+++||
T Consensus       125 ~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~ew~l~~~~~~~~~~~~y~~~~~~~~~~~~y~~l~~~~~l~R~~~~y  204 (322)
T 3rqw_A          125 QFVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYY  204 (322)
T ss_dssp             EEEEEEEESSCSSEEEEEEEEECCSCSSSSCSSSSEEECCSCEECCEEEECTTSCCSSSSCCEEEEEEEEEEEEECCHHH
T ss_pred             EEEEEEEEcccCcceEEEEECCCcccccCCCCCCceEEEeeeEEEeeccccceeeeccCCCCCeEEEEEEEEEEEeeeee
Confidence            9999999999999999999875431    112345666 665554222222 222222  68999999999999999999


Q ss_pred             EEEEE
Q psy1864         226 LIQIY  230 (232)
Q Consensus       226 li~i~  230 (232)
                      ++|+|
T Consensus       205 ~~~~~  209 (322)
T 3rqw_A          205 LWSFI  209 (322)
T ss_dssp             HHHTH
T ss_pred             eehHH
Confidence            98875

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E

Probab=99.97  E-value=1.3e-33  Score=269.09  Aligned_cols=166  Identities=20%  Similarity=0.403  Sum_probs=139.4

Q ss_pred             CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDN   79 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~   79 (232)
                      +|++++|++++|.|+||+|||++ ||++.++++ .++||+||++++|++++.++.....++.  |+++|+|.|+.+    
T Consensus        48 ~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~-~~~IW~PDi~l~N~~d~~~~~~~~~nv~--v~~~G~V~~~~~----  120 (488)
T 4aq5_E           48 ALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIP-SELLWLPDVVLENNVDGQFEVAYYANVL--VYNDGSMYWLPP----  120 (488)
T ss_dssp             BEEEEEEEEEEEECCTTCCCTTTTTTCSCCCCC-TTSSCCCCEECSSSCCSCCBSCSSSCCC--BCTTSEEEECCE----
T ss_pred             eeeeeeeeeeEEECcccCcCchhcCCceEEecC-ccCEECCceehhccccccccccccccEE--EeCCceEEEecc----
Confidence            48999999999999999999999 999999998 9999999999999999988776666654  699999999999    


Q ss_pred             cccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEE
Q psy1864          80 MRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKM  159 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~  159 (232)
                                                                             +..+++|+||+++||||+|.|+|+|
T Consensus       121 -------------------------------------------------------~~~~s~C~mdl~~FPfD~Q~C~l~f  145 (488)
T 4aq5_E          121 -------------------------------------------------------AIYRSTCPIAVTYFPFDWQNCSLVF  145 (488)
T ss_dssp             -------------------------------------------------------EBCEECCCCSSSSSSSSCCCCCEEE
T ss_pred             -------------------------------------------------------eeEEeecccccccCCCcCceeeEEe
Confidence                                                                   9999999999999999999999999


Q ss_pred             eeeccCcceEEEEecCCCCe----------ee--eccEEeCcEEEEEEEEE-eeecCCCCCceEEEEEEEEEEecccceE
Q psy1864         160 ASYGWTTDDLIFLWKEGDPV----------QV--VKNLHLPRFTLEKFYTD-YCNSKTNTGAYSCLKVDLLFKREFSYYL  226 (232)
Q Consensus       160 ~S~~~~~~~l~~~~~~~~~~----------~~--~~~~~l~~~~~~~~~~~-~~~~~~~~~~ys~l~~~l~lkR~~~yYl  226 (232)
                      +||+|+.+++.+.|..++..          .+  ..+|++.+.+..+.... +|+   .++.|++++++|+|||+++||+
T Consensus       146 ~S~~y~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~eW~l~~~~~~~~~~~~~~~---~~~~y~~l~~~~~lrR~~~~Y~  222 (488)
T 4aq5_E          146 RSQTYNAHEVNLQLSAEEGEVVEWIHIDPEDFTENGEWTIRHRPAKKNYNWQLTK---DDIDFQEIIFFLIIQRKPLFYI  222 (488)
T ss_dssp             EESSSCSSSCCEECCCSCC-------CGGGSCCTTCSEEEEECCCEEECCCCTTC---CCSCCCEEEECCEEEECCCSSH
T ss_pred             eeeccccceEEEEeccCCCcceeeeeccHHHccccceEEEEeeEEEEEEeeeccC---CCCCcceEEEEEEEccchhhee
Confidence            99999999999999865421          11  23577665544332221 232   2467999999999999999999


Q ss_pred             EEEEE
Q psy1864         227 IQIYY  231 (232)
Q Consensus       227 i~i~~  231 (232)
                      +|+|+
T Consensus       223 i~l~i  227 (488)
T 4aq5_E          223 INIIA  227 (488)
T ss_dssp             HHHHH
T ss_pred             hhHhH
Confidence            88763

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B

Probab=99.97  E-value=7.2e-33  Score=264.29  Aligned_cols=163  Identities=21%  Similarity=0.438  Sum_probs=136.8

Q ss_pred             CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDN   79 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~   79 (232)
                      +|++++|++++|.|+||+|||++ ||++.++++ .++||+||++++|++++.++.....++  .|++||+|.++.+    
T Consensus        73 ~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~-~~~IW~PDi~l~N~~d~~~~~~~~~nv--~v~~~G~V~~~~~----  145 (493)
T 4aq5_B           73 EMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIP-SDDVWQPDIVLMNNNDGSFEITLHVNV--LVQHTGAVSWHPS----  145 (493)
T ss_dssp             EEEEEEECEEEEECTTCCCCHHHHSSCSCEEEC-SCSSCCCCCEESSCCCSCEESSSSSCE--EECTTSEEEECCE----
T ss_pred             EEEEEEEeecceECcccCCChhhcCCeeEEecc-cccCccCcEEEecccccccccccccce--EEecCCCEEEeee----
Confidence            48999999999999999999999 999999998 999999999999999988876655565  4799999999999    


Q ss_pred             cccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEE
Q psy1864          80 MRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKM  159 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~  159 (232)
                                                                             +..+++|+||+++||||+|.|+|+|
T Consensus       146 -------------------------------------------------------~~~~s~C~mdl~~FPfD~Q~C~l~f  170 (493)
T 4aq5_B          146 -------------------------------------------------------AIYRSSCTIKVMYFPFDWQNCTMVF  170 (493)
T ss_dssp             -------------------------------------------------------EEEEECCSCTTCSSSTTCCCCEEEE
T ss_pred             -------------------------------------------------------eeeeecccccccCCCccceeEEEEE
Confidence                                                                   9999999999999999999999999


Q ss_pred             eeeccCcceEEEEecCCCC---------e---ee--eccEEeCcEEEEEEEEEeeecCCCCCceEEEEEEEEEEecccce
Q psy1864         160 ASYGWTTDDLIFLWKEGDP---------V---QV--VKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYY  225 (232)
Q Consensus       160 ~S~~~~~~~l~~~~~~~~~---------~---~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~ys~l~~~l~lkR~~~yY  225 (232)
                      +||+|+.+++.+.|..+++         +   ++  ..+|++.+.+..+.      ....++.|+++++++++||+++||
T Consensus       171 ~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~l~~f~~~~eW~l~~~~~~~~------~~~~~~~y~~l~~~~~lrR~~~~Y  244 (493)
T 4aq5_B          171 KSYTYDTSEVILQHALDAKGEREVKEIMINQDAFTENGQWSIEHKPSRKN------WRSDDPSYEDVTFYLIIQRKPLFY  244 (493)
T ss_dssp             ECSSCCBTSCEEECCCCC---------CCSGGGCCTTCSSBCCCCCCEEC------CCTTSSSBCCEEEECCCBCCCCSS
T ss_pred             eeecCccccEEEEeccCCCCccceecccccHHHhccccceeeeeeeEEEE------eecCCCCccEEEEEEEEEecccee
Confidence            9999999999999965431         1   11  23576665543221      111234899999999999999999


Q ss_pred             EEEEEE
Q psy1864         226 LIQIYY  231 (232)
Q Consensus       226 li~i~~  231 (232)
                      ++|+|+
T Consensus       245 ~i~l~i  250 (493)
T 4aq5_B          245 IVYTIV  250 (493)
T ss_dssp             TTTTHH
T ss_pred             eehhhh
Confidence            988763

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=84.08  E-value=0.015  Score=52.10  Aligned_cols=32  Identities=47%  Similarity=0.898  Sum_probs=27.2

Q ss_pred             cccceeeeeeeeecceeEeeeeeeeeeeeeEE
Q psy1864         107 TRSKRIDVISRITFPLVFALFNLTYWSTISLT  138 (232)
Q Consensus       107 ~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t  138 (232)
                      -...++|.++|+.||..|++||+.||.....+
T Consensus       310 ~~~~~~~~~~~~~~p~~~~i~n~~~~~~~~~~  341 (347)
T 3rhw_A          310 DISKRVDLISRALFPVLFFVFNILYWSRFGHH  341 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            34567899999999999999999999877654

>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A

Probab=80.32  E-value=0.0011  Score=53.90  Aligned_cols=26  Identities=12%  Similarity=0.080  Sum_probs=23.1

Q ss_pred             CCCceEEEEEEEEEEecccceEEEEE
Q psy1864         205 NTGAYSCLKVDLLFKREFSYYLIQIY  230 (232)
Q Consensus       205 ~~~~ys~l~~~l~lkR~~~yYli~i~  230 (232)
                      ++|.|+++++.+++||+++||++|+|
T Consensus        32 ~~g~y~~l~~~f~lrR~~~~y~~~li   57 (140)
T 2lkg_A           32 EAGRLIELSQEGGGGGGPLYFVVNVI   57 (140)
T ss_dssp             HHHHHHHHHHTSCSSSCTHHHHHHHH
T ss_pred             CCCcEEEEEEEEEEEEcceeeeehhh
Confidence            56788999999999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	232
d1uw6a_	208	b.96.1.1 (A:) Acetylcholine binding protein (ACHBP	0.001

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Length = 208

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 5/73 (6%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           E  V    +  W D  L +N              S +W+PDL   N          +   
Sbjct: 48  EVDVVFWQQTTWSDRTLAWNSSHSPD--QVSVPISSLWVPDLAAYNAISKPEV---LTPQ 102

Query: 61  YIRIHPQGSVLYS 73
             R+   G VLY 
Sbjct: 103 LARVVSDGEVLYM 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d1uw6a_	208	Acetylcholine binding protein (ACHBP) {Great pond	99.97

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]}

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

Probab=99.97  E-value=4.2e-30  Score=218.38  Aligned_cols=153  Identities=22%  Similarity=0.330  Sum_probs=128.5

Q ss_pred             CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccc
Q psy1864           1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDN   79 (232)
Q Consensus         1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~   79 (232)
                      ++++++|++++|.|+||+|||++ ++  .+.++ .++||+||++++|++.....   ..+..+.|+++|+|.++.+    
T Consensus        48 ~~~~~~~~~~~W~D~rL~Wnp~~~~~--~~~v~-~~~iW~PDi~l~n~~~~~~~---~~~~~~~v~~~G~V~~~~~----  117 (208)
T d1uw6a_          48 EVDVVFWQQTTWSDRTLAWNSSHSPD--QVSVP-ISSLWVPDLAAYNAISKPEV---LTPQLARVVSDGEVLYMPS----  117 (208)
T ss_dssp             EEEEEEEEEEEEECGGGCCCCTTSCS--EEEEE-GGGSCCCCEEETTBCSCCEE---CSCCEEEEETTSEEEECCE----
T ss_pred             EEEEEEEEEEEEECCccccccccCCc--eeccc-hhccccccEEEEEEcccccc---ccceEEEEEeCCcEEEEec----
Confidence            37899999999999999999998 55  47777 88999999999998765432   2344567899999999999    


Q ss_pred             cccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEE
Q psy1864          80 MRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKM  159 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~  159 (232)
                                                                             +.++++|+|++..|| |.|.|+|+|
T Consensus       118 -------------------------------------------------------~~~~~~C~~~~~~f~-d~Q~C~l~f  141 (208)
T d1uw6a_         118 -------------------------------------------------------IRQRFSCDVSGVDTE-SGATCRIKI  141 (208)
T ss_dssp             -------------------------------------------------------EEEEEECCCTTTTSS-SCEEEEEEE
T ss_pred             -------------------------------------------------------EEEEEeccccccCCc-ceEEEEEEE
Confidence                                                                   999999999987777 899999999


Q ss_pred             eeeccCcceEEEEecCCCCe---ee--eccEEeCcEEEEEEEEEe-eecCCCCCceEEEEEEEEEEeccc
Q psy1864         160 ASYGWTTDDLIFLWKEGDPV---QV--VKNLHLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKREFS  223 (232)
Q Consensus       160 ~S~~~~~~~l~~~~~~~~~~---~~--~~~~~l~~~~~~~~~~~~-~~~~~~~~~ys~l~~~l~lkR~~~  223 (232)
                      +||+|+.+++.+.+..+...   .+  ..+|+|.++++.+....| ||+.    +|+.++++|+||||+.
T Consensus       142 gSw~y~~~~i~l~~~~~~~~~~~~~~~~~eW~l~~~~~~~~~~~y~cc~~----~y~~i~~~i~lrRr~~  207 (208)
T d1uw6a_         142 GSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPE----AYEDVEVSLNFRKKGR  207 (208)
T ss_dssp             EESSCCTTTEEEEECCCSSCTTTTSCTTSSEEEEEEEEEEEEEECTTCSS----EEEEEEEEEEEEECCC
T ss_pred             eCceeccceEEEeeccCCCccccccccCCCEEEEEeEEEEEEEEeCCCCC----CcceEEEEEEEEECCC
Confidence            99999999999988754432   12  357999999998777666 7764    9999999999999974