Psyllid ID: psy1888

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
MLDTELTGGAQDTIYLCNFRVSVDGEWLCLKQLDDVEVRVRDPPELRSPSPEPPLFVARNPVIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLKPKKGLLGPKKELWDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVIDFSLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKLQAL
cccccccccccccEEEEEEEEEcccHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHccccHHcccccccccccccHHHHHHHHHccccccccccEEcccccccccccccHHHHHHcccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccHHHHHHHHHHHHHHccEEEEEcccEEEHHHHccccccccccccccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccHHHHHHHHHHHHcccEEEEEEEEccccccccccEEEccHHEEccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mldteltggaqdtiYLCNFRvsvdgewlclkqlddvevrvrdppelrspspepplfvarnpviierrnLVNISKLIVKELIETSQKhgrmldsdhmplQHFFIVLEHVLRhglkpkkgllgpkkELWDILQLVEKlnpeasditasvrdlptvktHMGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEAIVILGKLLSLnvidcnlcvkeedldcqqgviDFSLYLRsacyhdhpeevtsQVEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNqlanssqhtsnlsvhEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKLQAL
mldteltggaqdtiYLCNFRVSVDGEWLCLKQLDDVEVRVRDPpelrspspepplfvarnpviierrnlvnisKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLKPKKGLLGPKKELWDILQLVEKlnpeasditasvrdlptvktHMGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVIDFSLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKLQAL
MLDTELTGGAQDTIYLCNFRVSVDGEWLCLKQLDDVEVRVrdppelrspspepplFVARNPVIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHglkpkkgllgpkkELWDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVIDFSLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKLQAL
*********AQDTIYLCNFRVSVDGEWLCLKQLDDVEVR***************LFVARNPVIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLKPKKGLLGPKKELWDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVIDFSLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQ***********************VGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEMY******
*********AQDTIYLCNFRVSVDGEWLCLKQ************************************LVNISKLIVKELI***********SDHMPLQHFFIVLEHVLRHGLKPKKGLLGPKKELWDILQLVEKLNPE*SD************THMGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVIDFSLYLRSACYHD************************************************************************************************************************************YKKLQAL
MLDTELTGGAQDTIYLCNFRVSVDGEWLCLKQLDDVEVRVRDPPELRSPSPEPPLFVARNPVIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLKPKKGLLGPKKELWDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVIDFSLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKLQAL
MLDTELTGGAQDTIYLCNFRVSVDGEWLCLKQLDDVEVR*******************RNPVIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLKPKKGLLGPKKELWDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVIDFSLYLRSAC*************DNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKLQAL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLDTELTGGAQDTIYLCNFRVSVDGEWLCLKQLDDVEVRVRDPPELRSPSPEPPLFVARNPVIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLKPKKGLLGPKKELWDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVIDFSLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTSNLSVHEVGLxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEDIKMINLEMYKKLQAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query386 2.2.26 [Sep-21-2011]
Q5FVJ0469 Protein RUFY3 OS=Rattus n yes N/A 0.937 0.771 0.450 5e-97
Q9D394469 Protein RUFY3 OS=Mus musc yes N/A 0.937 0.771 0.453 6e-97
Q7L099469 Protein RUFY3 OS=Homo sap yes N/A 0.937 0.771 0.448 1e-96
Q5R4V2469 Protein RUFY3 OS=Pongo ab yes N/A 0.937 0.771 0.446 9e-96
Q8R4C2 606 RUN and FYVE domain-conta no N/A 0.831 0.529 0.474 5e-88
Q5R5R4 606 RUN and FYVE domain-conta no N/A 0.834 0.531 0.473 1e-87
Q8WXA3 655 RUN and FYVE domain-conta no N/A 0.831 0.490 0.472 6e-87
Q8BIJ7 712 RUN and FYVE domain-conta no N/A 0.834 0.452 0.449 1e-82
Q96T51 708 RUN and FYVE domain-conta no N/A 0.834 0.454 0.451 6e-82
A7YDW0428 RUN domain-containing pro no N/A 0.585 0.528 0.266 2e-22
>sp|Q5FVJ0|RUFY3_RAT Protein RUFY3 OS=Rattus norvegicus GN=Rufy3 PE=1 SV=1 Back     alignment and function desciption
 Score =  354 bits (909), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 188/417 (45%), Positives = 272/417 (65%), Gaps = 55/417 (13%)

Query: 5   ELTGGAQDTIYLCNFRVSVDGEWLCLKQLDDVEVRVRDPPELRSPSPEP----PLFVARN 60
           ++T  A +TIYLC FRVS+DGEWLCL++LDD+ +         +P PEP    P ++  N
Sbjct: 17  KITQAAMETIYLCKFRVSMDGEWLCLRELDDISL---------TPDPEPTHEDPNYLMAN 67

Query: 61  PVIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLKPKKGLL 120
               ER NL+N++KL +K LIE++   GR LDSD+ PLQ FF+V+EH L+HGLK KK  L
Sbjct: 68  ----ERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFL 123

Query: 121 GPKKELWDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVL 180
           G  K  W  L+LVEKL PEA++ITASV+DLP +KT +GR RAWLRLALMQKKL++Y++ L
Sbjct: 124 GQNKSFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKAL 183

Query: 181 VDHRDDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVIDFSLYL 240
           ++ + ++L E++E +AL+M +E  +I G L+ LNVID N C+K EDLD Q GVIDFS+YL
Sbjct: 184 INKK-ELLSEFYEANALMMEEEGAIIAGLLVGLNVIDANFCMKGEDLDSQVGVIDFSMYL 242

Query: 241 RSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMRE 300
           +     D      S+ +  ++ +LDQKNY+EELNRHLNATV NLQ +V++L  +N  + E
Sbjct: 243 K-----DGNSSKGSEGDGQITAILDQKNYVEELNRHLNATVNNLQAKVDALEKSNTKLTE 297

Query: 301 DLSIAEKNLRILIQENENLKNQ----------------------LANSSQHTS-----NL 333
           +L++A   +  L +E E +K +                      L+ + +H        L
Sbjct: 298 ELAVANNRIITLQEEMERVKEESSYLLESNRKGPKQDRTAEGQALSEARKHLKEETQLRL 357

Query: 334 SVH-----EVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKLQA 385
            V      ++ ++ EME+AMK+LE+DV +KQD ++ LR+QL+D++ +  E+  KLQ+
Sbjct: 358 DVEKELELQISMRQEMELAMKMLEKDVCEKQDALVSLRQQLDDLRALKHELAFKLQS 414
Implicated in the formation of a single axon by developing neurons. May inhibit the formation of additional axons by inhibition of PI3K in minor neuronal processes.
Rattus norvegicus (taxid: 10116)
>sp|Q9D394|RUFY3_MOUSE Protein RUFY3 OS=Mus musculus GN=Rufy3 PE=1 SV=1 Back     alignment and function description
>sp|Q7L099|RUFY3_HUMAN Protein RUFY3 OS=Homo sapiens GN=RUFY3 PE=1 SV=1 Back     alignment and function description
>sp|Q5R4V2|RUFY3_PONAB Protein RUFY3 OS=Pongo abelii GN=RUFY3 PE=2 SV=1 Back     alignment and function description
>sp|Q8R4C2|RUFY2_MOUSE RUN and FYVE domain-containing protein 2 OS=Mus musculus GN=Rufy2 PE=1 SV=2 Back     alignment and function description
>sp|Q5R5R4|RUFY2_PONAB RUN and FYVE domain-containing protein 2 OS=Pongo abelii GN=RUFY2 PE=2 SV=1 Back     alignment and function description
>sp|Q8WXA3|RUFY2_HUMAN RUN and FYVE domain-containing protein 2 OS=Homo sapiens GN=RUFY2 PE=1 SV=2 Back     alignment and function description
>sp|Q8BIJ7|RUFY1_MOUSE RUN and FYVE domain-containing protein 1 OS=Mus musculus GN=Rufy1 PE=1 SV=1 Back     alignment and function description
>sp|Q96T51|RUFY1_HUMAN RUN and FYVE domain-containing protein 1 OS=Homo sapiens GN=RUFY1 PE=1 SV=2 Back     alignment and function description
>sp|A7YDW0|RUN3A_DANRE RUN domain-containing protein 3A OS=Danio rerio GN=rundc3a PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
307180769 863 Protein RUFY3 [Camponotus floridanus] 0.968 0.433 0.689 1e-153
328777178 869 PREDICTED: RUN and FYVE domain-containin 0.984 0.437 0.680 1e-151
340718546 855 PREDICTED: RUN and FYVE domain-containin 0.984 0.444 0.675 1e-150
383858728 881 PREDICTED: RUN and FYVE domain-containin 0.968 0.424 0.682 1e-150
345490035 833 PREDICTED: RUN and FYVE domain-containin 0.984 0.456 0.673 1e-150
350401707 855 PREDICTED: RUN and FYVE domain-containin 0.984 0.444 0.675 1e-150
270001486 546 hypothetical protein TcasGA2_TC000321 [T 0.974 0.688 0.659 1e-149
189234819 668 PREDICTED: similar to CG31064 CG31064-PB 0.974 0.562 0.659 1e-149
332019469 902 Protein RUFY3 [Acromyrmex echinatior] 0.971 0.415 0.637 1e-149
380027872 913 PREDICTED: RUN and FYVE domain-containin 0.989 0.418 0.626 1e-147
>gi|307180769|gb|EFN68638.1| Protein RUFY3 [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 284/412 (68%), Positives = 326/412 (79%), Gaps = 38/412 (9%)

Query: 8   GGAQDTIYLCNFRVSVDGEWLCLKQLDDVEVRVRDPPELRSPSPEPPLFVARNPVIIERR 67
            GAQDTIYLCNFRVSVDGEWLCLK+L DVE  ++D  + RSPSP P    AR+PVIIER 
Sbjct: 103 AGAQDTIYLCNFRVSVDGEWLCLKELQDVEFSLQDSMQ-RSPSP-PLALSARDPVIIERS 160

Query: 68  NLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLKPKKGLLGPKKELW 127
           NLVNISKLIVKELIETS K+GRMLDSDHMPLQHFFIVLEHVLRHGL+PKKGLLGPKKELW
Sbjct: 161 NLVNISKLIVKELIETSLKYGRMLDSDHMPLQHFFIVLEHVLRHGLRPKKGLLGPKKELW 220

Query: 128 DILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLVDHRDDI 187
           DILQLVEK  PEA DIT+S+RDLPTV+T MGRARAWLR+ALMQKKLADYL+VL+DH+DDI
Sbjct: 221 DILQLVEKYCPEAQDITSSIRDLPTVRTAMGRARAWLRMALMQKKLADYLKVLIDHKDDI 280

Query: 188 LVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVIDFSLYLRSACYHD 247
           L EYFE DAL+MS+EAIV++G L+ LNVIDCN CVKEEDLDCQQGVIDFSLYLR++  H 
Sbjct: 281 LSEYFEPDALMMSEEAIVVMGLLVGLNVIDCNFCVKEEDLDCQQGVIDFSLYLRNS-NHI 339

Query: 248 HPEEVTSQVE-DNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAE 306
             E    ++E DNM+ VLDQKNYIEELNRHLNATV NLQ +VESLTTTNALM+EDL+IA+
Sbjct: 340 PGESPDDELENDNMTTVLDQKNYIEELNRHLNATVTNLQAKVESLTTTNALMKEDLAIAK 399

Query: 307 KNLRILIQENENLKNQL------AN-----------------------SSQHTSNLSVH- 336
            N+  + +EN  LK +L      AN                        S+  S   +  
Sbjct: 400 NNILSIQEENRQLKKELGIEVKDANENGKVPLKITETTAEMEELRSRLESEKKSRQDLEK 459

Query: 337 ----EVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKLQ 384
               ++ +K+EMEVAMKLLE+D+H+KQDTII LRRQLEDIK+INLEMYKKLQ
Sbjct: 460 ELELQISMKSEMEVAMKLLEKDIHEKQDTIISLRRQLEDIKLINLEMYKKLQ 511

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328777178|ref|XP_001120686.2| PREDICTED: RUN and FYVE domain-containing protein 2-like [Apis mellifera] Back     alignment and taxonomy information
>gi|340718546|ref|XP_003397726.1| PREDICTED: RUN and FYVE domain-containing protein 2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383858728|ref|XP_003704851.1| PREDICTED: RUN and FYVE domain-containing protein 2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|345490035|ref|XP_001602966.2| PREDICTED: RUN and FYVE domain-containing protein 2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|350401707|ref|XP_003486235.1| PREDICTED: RUN and FYVE domain-containing protein 2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|270001486|gb|EEZ97933.1| hypothetical protein TcasGA2_TC000321 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189234819|ref|XP_970297.2| PREDICTED: similar to CG31064 CG31064-PB [Tribolium castaneum] Back     alignment and taxonomy information
>gi|332019469|gb|EGI59949.1| Protein RUFY3 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|380027872|ref|XP_003697639.1| PREDICTED: RUN and FYVE domain-containing protein 2-like [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
FB|FBgn0051064 862 CG31064 [Drosophila melanogast 0.844 0.378 0.541 1.8e-101
MGI|MGI:106484469 Rufy3 "RUN and FYVE domain con 0.948 0.780 0.427 4e-74
UNIPROTKB|F6XYS8 620 RUFY3 "Uncharacterized protein 0.950 0.591 0.420 6.5e-74
RGD|1565242469 Rufy3 "RUN and FYVE domain con 0.948 0.780 0.424 6.5e-74
UNIPROTKB|Q7L099469 RUFY3 "Protein RUFY3" [Homo sa 0.950 0.782 0.417 1.7e-73
ZFIN|ZDB-GENE-070424-66 698 rufy2 "RUN and FYVE domain con 0.782 0.432 0.484 7.2e-68
UNIPROTKB|F1SUI7 656 RUFY2 "Uncharacterized protein 0.803 0.472 0.462 2.4e-67
UNIPROTKB|F1PXC3 606 RUFY2 "Uncharacterized protein 0.803 0.511 0.462 2.4e-67
UNIPROTKB|F1PXD5 641 RUFY2 "Uncharacterized protein 0.803 0.483 0.462 2.4e-67
ZFIN|ZDB-GENE-050327-58 570 rufy3 "RUN and FYVE domain con 0.836 0.566 0.437 2.4e-67
FB|FBgn0051064 CG31064 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 865 (309.6 bits), Expect = 1.8e-101, Sum P(2) = 1.8e-101
 Identities = 183/338 (54%), Positives = 240/338 (71%)

Query:    57 VARNPVIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHXXXXX 116
             ++R+   IER NLVNI KL+VKEL+E S ++GRMLDSDH+PLQHFFIV+EHVL H     
Sbjct:   320 LSRDTAEIERSNLVNICKLVVKELLEQSLRYGRMLDSDHLPLQHFFIVIEHVLGHGLRPK 379

Query:   117 XXXXXXXXELWDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADY 176
                     ELWD+LQ VE   PEA DITASVRDLPTV+TH+GRARAWLR+ALMQKKL+DY
Sbjct:   380 KGLLGPRKELWDLLQSVEHYCPEAQDITASVRDLPTVRTHIGRARAWLRIALMQKKLSDY 439

Query:   177 LQVLVDHRDDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVIDF 236
             LQ L++HR+D L +Y+E  AL+MSDE +VI+G L+ LNVIDCNLCVKEEDLD QQGVIDF
Sbjct:   440 LQALIEHREDSLFDYYEPHALMMSDEIVVIMGILVGLNVIDCNLCVKEEDLDSQQGVIDF 499

Query:   237 SLYLRSACYHDH--PEE------VTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQTQV 288
             SLYLRS+  +    PE+      + +  + NM  VLDQKNYIEELNRHLNATVGNLQ +V
Sbjct:   500 SLYLRSSSRNADAAPEDSAPPALLDATGQGNMIAVLDQKNYIEELNRHLNATVGNLQAKV 559

Query:   289 ESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA---NSSQHTSNLSVHEVGLKAEME 345
             ESLTTTNALM+EDL+IA  +L  L  EN+ ++   +   N+S  +   S  +    +E  
Sbjct:   560 ESLTTTNALMKEDLAIARNSLLALQAENQAMRQSTSAGDNNSTGSGGSSDKDKEKASEEL 619

Query:   346 VAMKLLERDVHQKQDTIIELRRQLE-DIKMINLEMYKK 382
             V  +    ++ ++    + L+ + +  +K++  ++++K
Sbjct:   620 VEERRKNSELEKELKLQVSLKAESDMAMKLLEKDIHEK 657
GO:0046872 "metal ion binding" evidence=IEA
GO:0006911 "phagocytosis, engulfment" evidence=IMP
MGI|MGI:106484 Rufy3 "RUN and FYVE domain containing 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F6XYS8 RUFY3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1565242 Rufy3 "RUN and FYVE domain containing 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q7L099 RUFY3 "Protein RUFY3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070424-66 rufy2 "RUN and FYVE domain containing 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SUI7 RUFY2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PXC3 RUFY2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PXD5 RUFY2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050327-58 rufy3 "RUN and FYVE domain containing 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5FVJ0RUFY3_RATNo assigned EC number0.45080.93780.7718yesN/A
Q7L099RUFY3_HUMANNo assigned EC number0.44840.93780.7718yesN/A
Q9D394RUFY3_MOUSENo assigned EC number0.45320.93780.7718yesN/A
Q5R4V2RUFY3_PONABNo assigned EC number0.44600.93780.7718yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
pfam02759128 pfam02759, RUN, RUN domain 8e-36
smart0059364 smart00593, RUN, domain involved in Ras-like GTPas 6e-11
>gnl|CDD|217217 pfam02759, RUN, RUN domain Back     alignment and domain information 
 Score =  126 bits (320), Expect = 8e-36
 Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 5/128 (3%)

Query: 100 HFFIVLEHVLRHGLKPK---KGLLGPKKELWDILQLVEKLNPEASDITASVRDLPTVKTH 156
                LE +L HGLK +      L  ++  W +L+ V KL P A ++  SV++LP + T 
Sbjct: 1   SLCPALEALLSHGLKRRSLDAAGLLRERSFWSLLERVGKLVPPAEELIRSVQELPQIHTP 60

Query: 157 MGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEAIVILGKLLS-LNV 215
            GR RAW+RLAL +K L  +L +L+ ++ ++L +Y+E  ALL   E + IL  LL  L+ 
Sbjct: 61  DGRFRAWIRLALNEKVLESWLSLLLSNK-ELLSKYYEPWALLRDPEFVSILLGLLVGLSA 119

Query: 216 IDCNLCVK 223
           +D NL + 
Sbjct: 120 LDFNLDLD 127

This domain is present in several proteins that are linked to the functions of GTPases in the Rap and Rab families. They could hence play important roles in multiple Ras-like GTPase signalling pathways. The domain is comprises six conserved regions, which in some proteins have considerable insertions between them. The domain core is thought to take up a predominantly alpha fold, with basic amino acids in regions A and D possibly playing a functional role in interactions with Ras GTPases. Length = 128
>gnl|CDD|214736 smart00593, RUN, domain involved in Ras-like GTPase signaling Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 386
KOG4381|consensus368 100.0
PF02759133 RUN: RUN domain; InterPro: IPR004012 This domain i 99.95
KOG2080|consensus 1295 99.75
KOG1648|consensus 813 99.75
smart0059364 RUN domain involved in Ras-like GTPase signaling. 99.68
KOG3759|consensus621 97.31
PRK1542279 septal ring assembly protein ZapB; Provisional 94.52
COG307479 Uncharacterized protein conserved in bacteria [Fun 94.46
KOG2222|consensus848 94.42
PF00038 312 Filament: Intermediate filament protein; InterPro: 94.07
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 93.04
KOG0804|consensus493 92.13
KOG2080|consensus 1295 91.86
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 91.86
PF10212518 TTKRSYEDQ: Predicted coiled-coil domain-containing 91.63
KOG0995|consensus 581 91.41
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 91.3
PRK10884206 SH3 domain-containing protein; Provisional 91.17
PRK11637 428 AmiB activator; Provisional 90.91
KOG0963|consensus 629 90.84
PRK09039 343 hypothetical protein; Validated 90.78
PF00038312 Filament: Intermediate filament protein; InterPro: 90.7
COG2433 652 Uncharacterized conserved protein [Function unknow 90.61
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 90.32
PF08172 248 CASP_C: CASP C terminal; InterPro: IPR012955 This 90.08
PF05911 769 DUF869: Plant protein of unknown function (DUF869) 89.86
PF15397258 DUF4618: Domain of unknown function (DUF4618) 89.83
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 89.75
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 88.33
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 88.29
COG1579 239 Zn-ribbon protein, possibly nucleic acid-binding [ 88.28
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 88.15
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 88.09
COG3883265 Uncharacterized protein conserved in bacteria [Fun 87.47
TIGR03752 472 conj_TIGR03752 integrating conjugative element pro 87.26
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 86.9
PF05667 594 DUF812: Protein of unknown function (DUF812); Inte 86.59
PF04111 314 APG6: Autophagy protein Apg6; InterPro: IPR007243 86.47
PRK09039 343 hypothetical protein; Validated 86.46
PF09726 697 Macoilin: Transmembrane protein; InterPro: IPR0191 86.41
KOG0971|consensus 1243 86.31
PF05911769 DUF869: Plant protein of unknown function (DUF869) 86.28
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 86.04
PRK10884206 SH3 domain-containing protein; Provisional 85.97
PF10186 302 Atg14: UV radiation resistance protein and autopha 85.89
PF07798177 DUF1640: Protein of unknown function (DUF1640); In 85.59
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 85.21
KOG0243|consensus 1041 85.11
PF04859131 DUF641: Plant protein of unknown function (DUF641) 85.03
KOG0982|consensus 502 84.46
TIGR0244965 conserved hypothetical protein TIGR02449. Members 83.97
PRK02224 880 chromosome segregation protein; Provisional 83.2
TIGR01843 423 type_I_hlyD type I secretion membrane fusion prote 82.96
PRK13169110 DNA replication intiation control protein YabA; Re 82.55
PF10186 302 Atg14: UV radiation resistance protein and autopha 82.52
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 82.51
KOG1029|consensus 1118 82.35
PF09755 310 DUF2046: Uncharacterized conserved protein H4 (DUF 82.12
PF0017064 bZIP_1: bZIP transcription factor cAMP response el 81.92
PF1419769 Cep57_CLD_2: Centrosome localisation domain of PPC 81.78
KOG0996|consensus 1293 81.77
PF14662193 CCDC155: Coiled-coil region of CCDC155 81.7
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 81.68
KOG0161|consensus 1930 81.53
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 81.33
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 81.13
PF15066527 CAGE1: Cancer-associated gene protein 1 family 80.26
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 80.21
>KOG4381|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.8e-50  Score=402.83  Aligned_cols=297  Identities=33%  Similarity=0.484  Sum_probs=264.6

Q ss_pred             CCCCcccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChHHHHHHHHHHHHHhcCCC-CCC---CCCCCCCCc
Q psy1888          51 PEPPLFVARNPVIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLK-PKK---GLLGPKKEL  126 (386)
Q Consensus        51 ~~~~~~~~~~p~~ieR~NLl~~lK~sVK~LiE~~~~~~r~I~dd~~~L~~LC~~LE~iL~HGLK-~k~---~~~g~~~~f  126 (386)
                      +.+.+.....|++.+|+||+++++++||.+|+.+.+.+++++++++++++||+.||+||+|||| ..+   +..+++++|
T Consensus        10 ~~~~~~~~~~~~~~~R~~li~~~~~~vk~~i~~~~~~~e~~~~~~~~~q~lc~~lE~iL~hgLk~~~~~~~~~~~~~~~F   89 (368)
T KOG4381|consen   10 MASKKSASARPTAKERRNLINRALLSVKGLIESAHSGKETADDSSEPVQNFCNSLEAILSHGLKFAGKATKSSLGNQKTF   89 (368)
T ss_pred             ccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcccCCcccCCccHHHHHHHHHHHHHHHhhhHHhhhccccccCCCccH
Confidence            3344455677799999999999999999999999998999999999999999999999999999 322   235578999


Q ss_pred             hHHHHHHHhhCCcccchhhhhccCCCCCCccchhHHHHHHHHhhhhHHHHHHHHHhCchhHHHhcccccCccCCccHHHH
Q psy1888         127 WDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEAIVI  206 (386)
Q Consensus       127 W~~l~~~~k~~P~~~d~i~~I~~L~~I~T~~GRgRAWIRlAL~eK~Ls~yL~~Ll~n~~~lL~~~Ye~~AlL~d~E~~vL  206 (386)
                      |+|++.+++++|     ..+|.+|++|+|++||||||||+|||||.|++|+.+++.+. ..+++||++||+|.++++.+|
T Consensus        90 W~~v~~~~~~~p-----~~~~~dl~~I~t~vgkgRAwiR~aL~ek~l~~Y~~~~lad~-~~~~eFy~~~alm~~e~s~~L  163 (368)
T KOG4381|consen   90 WGFVRLVLHLVP-----RSSIEDLEQISTSVGKGRAWIRVALNEKRLSDYLSTLLADE-ELLSEFYEPWALMDEEESAIL  163 (368)
T ss_pred             HHHHHHHhccCc-----hhhhhhhcccccccccchHHHHHHhhhhhHHHHHHHHHHhH-HHHHHHhcchHHHhHHHHHHH
Confidence            999999999987     57899999999999999999999999999999999999987 799999999999977778999


Q ss_pred             HHhhccccceecccccCCCCCCCCC-ccccchhhhhccCCCCCCccccccccchhHHHHHhhhHHHHHHHHHHHhHHHHH
Q psy1888         207 LGKLLSLNVIDCNLCVKEEDLDCQQ-GVIDFSLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQ  285 (386)
Q Consensus       207 ~~lL~GLn~IdF~l~lk~~~LD~~~-~vId~s~yl~~~~~~~~~~~~~~~~~~~~~~~ldQK~ylEElnr~l~~~~~~l~  285 (386)
                      .++|+||++|+|+||+++++||+++ +||||++|++....+    .+...+..+....++++++.+++++.++...++++
T Consensus       164 ~gLl~gLn~i~~~f~v~~~~Ld~q~~~v~~~s~~lk~~~~~----~~~~~~~~~~~ss~~~~~~~~~~~s~l~~~~~~~~  239 (368)
T KOG4381|consen  164 PGLLVGLNAIDFSFCVDGEDLDGQAPAVPDFSCLLKPIQSN----DTPEEEVSQLLSSLDEKNRPEELVSPLEKDENSLY  239 (368)
T ss_pred             HHhhcCHHHHHHHhhcchHhhcCCCCccceeeeeecccccc----CCccccccccccchhhhhhhhhhccccccchhccc
Confidence            9999999999999999999999995 999999999986322    11223444688889999999999999999999999


Q ss_pred             HHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888         286 TQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIEL  365 (386)
Q Consensus       286 ~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~l  365 (386)
                      .+....+..+.+..+|.+.|+..+.-+++++...                   -+.+.++.+|+.++++.++|+|.++.+
T Consensus       240 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~-------------------~~~q~~~~~~~~~~~~~~~~e~~~~~~  300 (368)
T KOG4381|consen  240 PKCSVVEQKSLLLESEKEYAEELLRTNEGSFDDS-------------------ELLQTPEDDIKALVGEKEEKEDRSDEL  300 (368)
T ss_pred             cccchhhhcchhHHHHHHhhhhhhhhhcCCCCch-------------------hhhcccCcchhhhhhhhhhcccccchh
Confidence            9999999999999999999998888887766543                   266778899999999999999999999


Q ss_pred             HHHHHHHhHhH
Q psy1888         366 RRQLEDIKMIN  376 (386)
Q Consensus       366 r~ql~~~k~in  376 (386)
                      .+|+.++...+
T Consensus       301 ~~~~~~~~~~~  311 (368)
T KOG4381|consen  301 SQQVTSLSPSD  311 (368)
T ss_pred             hhhhhhccCch
Confidence            99999998776

>PF02759 RUN: RUN domain; InterPro: IPR004012 This domain is present in several proteins that are linked to the functions of GTPases in the Rap and Rab families Back     alignment and domain information
>KOG2080|consensus Back     alignment and domain information
>KOG1648|consensus Back     alignment and domain information
>smart00593 RUN domain involved in Ras-like GTPase signaling Back     alignment and domain information
>KOG3759|consensus Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2222|consensus Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>KOG0804|consensus Back     alignment and domain information
>KOG2080|consensus Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif Back     alignment and domain information
>KOG0995|consensus Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0963|consensus Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PF15397 DUF4618: Domain of unknown function (DUF4618) Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0971|consensus Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>KOG0243|consensus Back     alignment and domain information
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function Back     alignment and domain information
>KOG0982|consensus Back     alignment and domain information
>TIGR02449 conserved hypothetical protein TIGR02449 Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>KOG1029|consensus Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization Back     alignment and domain information
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 Back     alignment and domain information
>KOG0996|consensus Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
2dwg_A180 Run Domain Of Rap2 Interacting Protein X, Crystalli 2e-50
2cxf_A190 Run Domain Of Rap2 Interacting Protein X, Crystalli 4e-50
2dwk_A180 Crystal Structure Of The Run Domain Of Mouse Rap2 I 4e-47
3cwz_B384 Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 384 8e-04
>pdb|2DWG|A Chain A, Run Domain Of Rap2 Interacting Protein X, Crystallized In P2(1)2(1)2(1) Space Group Length = 180 Back     alignment and structure 
Iteration: 1

 Score =  196 bits (498), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 124/171 (72%), Gaps = 1/171 (0%)
Query: 65  ERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHXXXXXXXXXXXXX 124
           ER NL+N++KL +K LIE++   GR LDSD+ PLQ FF+V+EH L+H             
Sbjct: 11  ERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNK 70
Query: 125 ELWDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLVDHR 184
             W  L+LVEKL PEA++ITASV+DLP +KT +GR RAWLRLALMQKKL++Y++ L++ +
Sbjct: 71  SFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKK 130
Query: 185 DDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVID 235
            ++L E++E +AL+M +E  +I G L+ LNVID N C+K EDLD Q GVID
Sbjct: 131 -ELLSEFYEVNALMMEEEGAIIAGLLVGLNVIDANFCMKGEDLDSQVGVID 180
>pdb|2CXF|A Chain A, Run Domain Of Rap2 Interacting Protein X, Crystallized In C2 Space Group Length = 190 Back     alignment and structure
>pdb|2DWK|A Chain A, Crystal Structure Of The Run Domain Of Mouse Rap2 Interacting Protein X Length = 180 Back     alignment and structure
>pdb|3CWZ|B Chain B, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 384 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
2dwk_A180 Protein RUFY3; RUN domain, effector, RAP2, bundle, 2e-53
3cwz_B384 RAB6IP1, RAB6-interacting protein 1; RAB small GTP 4e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-04
>2dwk_A Protein RUFY3; RUN domain, effector, RAP2, bundle, protein binding, structural genomics, NPPSFA; 2.00A {Mus musculus} PDB: 2dwg_A 2cxf_A 2cxl_A Length = 180 Back     alignment and structure
 Score =  174 bits (441), Expect = 2e-53
 Identities = 99/178 (55%), Positives = 134/178 (75%), Gaps = 1/178 (0%)

Query: 58  ARNPVIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLKPKK 117
             + +  ER NL+N++KL +K LIE++   GR LDSD+ PLQ FF+V+EH L+HGLK KK
Sbjct: 4   GSSGMANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKK 63

Query: 118 GLLGPKKELWDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYL 177
             LG  K  W  L+LVEKL PEA++ITASV+DLP +KT +GR RAWLRLALMQKKL++Y+
Sbjct: 64  TFLGQNKSFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYM 123

Query: 178 QVLVDHRDDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVID 235
           + L++ + ++L E++E +AL+M +E  +I G L+ LNVID N C+K EDLD Q GVID
Sbjct: 124 KALINKK-ELLSEFYEVNALMMEEEGAIIAGLLVGLNVIDANFCMKGEDLDSQVGVID 180
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus} Length = 384 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
2dwk_A180 Protein RUFY3; RUN domain, effector, RAP2, bundle, 100.0
3cwz_B384 RAB6IP1, RAB6-interacting protein 1; RAB small GTP 99.97
4giw_A198 RUN and SH3 domain-containing protein 1; NGF-TRKA 99.95
4gkw_A167 Spindle assembly abnormal protein 6; double helix, 95.75
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 95.74
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 94.85
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 94.7
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 94.64
3m91_A51 Proteasome-associated ATPase; coil COIL alpha heli 94.42
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 93.55
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 93.54
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 92.57
3na7_A 256 HP0958; flagellar biogenesis, flagellum export, C4 91.66
3na7_A 256 HP0958; flagellar biogenesis, flagellum export, C4 90.1
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 89.5
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 89.12
1deq_A 390 Fibrinogen (alpha chain); coiled-coil, blood clott 88.12
2oqq_A42 Transcription factor HY5; homodimer leucine zipper 87.61
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 87.5
3swk_A86 Vimentin; cytoskeleton, intermediate filament, alp 87.2
3cvf_A79 Homer-3, homer protein homolog 3; coiled coil, alt 86.3
3m9b_A251 Proteasome-associated ATPase; coil COIL with 5 bet 86.03
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 85.69
2w6a_A63 ARF GTPase-activating protein GIT1; PIX, zinc, sig 85.04
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 84.99
3nmd_A72 CGMP dependent protein kinase; leucine zipper, coi 84.2
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 83.91
1m1j_A 491 Fibrinogen alpha subunit; coiled coils, disulfide 83.7
2e7s_A135 RAB guanine nucleotide exchange factor SEC2; coile 82.29
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 82.07
1zxa_A67 CGMP-dependent protein kinase 1, alpha isozyme; pa 81.99
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 81.07
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 80.32
>2dwk_A Protein RUFY3; RUN domain, effector, RAP2, bundle, protein binding, structural genomics, NPPSFA; 2.00A {Mus musculus} PDB: 2dwg_A 2cxf_A 2cxl_A Back     alignment and structure
Probab=100.00  E-value=2.2e-49  Score=361.56  Aligned_cols=177  Identities=56%  Similarity=0.938  Sum_probs=158.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHHHhhC
Q psy1888          58 ARNPVIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLKPKKGLLGPKKELWDILQLVEKLN  137 (386)
Q Consensus        58 ~~~p~~ieR~NLl~~lK~sVK~LiE~~~~~~r~I~dd~~~L~~LC~~LE~iL~HGLK~k~~~~g~~~~fW~~l~~~~k~~  137 (386)
                      .+||+.++|+||++++|.+||+|++++++.+++|+++++++++||.+||+||.||||.+.||||++++||++++.+.+.+
T Consensus         4 ~~~~~~~~r~~Ll~~~k~~VK~l~e~~~~~~~~i~~~~~~l~~LC~~lE~iL~HGLK~~~~~l~~~~~~W~~l~~~~~~~   83 (180)
T 2dwk_A            4 GSSGMANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLV   83 (180)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHCSCBCTTCHHHHHHHHHHHHHHHTTBCC-------CCTTHHHHHHHHHHC
T ss_pred             CcChHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHcCCCCccccCCCCCcHHHHHHHHHhhC
Confidence            47889999999999999999999999988889999999999999999999999999999899999999999999999999


Q ss_pred             CcccchhhhhccCCCCCCccchhHHHHHHHHhhhhHHHHHHHHHhCchhHHHhcccccCccCCccHHHHHHhhcccccee
Q psy1888         138 PEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEAIVILGKLLSLNVID  217 (386)
Q Consensus       138 P~~~d~i~~I~~L~~I~T~~GRgRAWIRlAL~eK~Ls~yL~~Ll~n~~~lL~~~Ye~~AlL~d~E~~vL~~lL~GLn~Id  217 (386)
                      |.+.++++.|+++++|+|++||||||||+|||+|+|+.||+.+++++ .++++||++||||+|+|+.+|.++|+||++|+
T Consensus        84 p~~~~~~~~v~~l~~i~T~~Gr~RawIR~aL~ek~L~~~l~~l~~~~-~~l~~~Y~~~All~~~e~~~l~~~L~gL~~v~  162 (180)
T 2dwk_A           84 PEAAEITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKK-ELLSEFYEVNALMMEEEGAIIAGLLVGLNVID  162 (180)
T ss_dssp             GGGHHHHHHHHTCTTCCSHHHHHHHHHHHHHHHTCHHHHHHHHHTCH-HHHTTTBCTTSGGGSHHHHHHHHHGGGGGGCC
T ss_pred             ccHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHHHHHhCh-HHHHhhCCCCccccCccHHHHHHHHhCcccee
Confidence            98889999999999999999999999999999999999999999998 89999999999999998899999999999999


Q ss_pred             cccccCCCCCCCCCcccc
Q psy1888         218 CNLCVKEEDLDCQQGVID  235 (386)
Q Consensus       218 F~l~lk~~~LD~~~~vId  235 (386)
                      |++++|+++||++++|||
T Consensus       163 F~l~~~~~~LD~~~~~~~  180 (180)
T 2dwk_A          163 ANFCMKGEDLDSQVGVID  180 (180)
T ss_dssp             BCSSCCHHHHCCCC----
T ss_pred             eeeeCChhhhCCCCcCCC
Confidence            999999999999999998
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus} Back     alignment and structure
>4giw_A RUN and SH3 domain-containing protein 1; NGF-TRKA signaling pathway, NF-KB pathway, signaling protein; 2.00A {Homo sapiens} Back     alignment and structure
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens} Back     alignment and structure
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens} Back     alignment and structure
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A Back     alignment and structure
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A Back     alignment and structure
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens} Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 386
d2cxfa1167 a.256.1.1 (A:83-249) Rap2 interacting protein X (R 3e-52
>d2cxfa1 a.256.1.1 (A:83-249) Rap2 interacting protein X (RUFY3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 Back     information, alignment and structure

class: All alpha proteins
fold: RUN domain-like
superfamily: RUN domain-like
family: RUN domain
domain: Rap2 interacting protein X (RUFY3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  169 bits (430), Expect = 3e-52
 Identities = 94/167 (56%), Positives = 128/167 (76%), Gaps = 1/167 (0%)

Query: 62  VIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLKPKKGLLG 121
           +  ER NL+N++KL +K LIE++   GR LDSD+ PLQ FF+V+EH L+HGLK KK  LG
Sbjct: 1   MANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLG 60

Query: 122 PKKELWDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLV 181
             K  W  L+LVEKL PEA++ITASV+DLP +KT +GR RAWLRLALMQKKL++Y++ L+
Sbjct: 61  QNKSFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALI 120

Query: 182 DHRDDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLD 228
           + + ++L E++E +AL+M +E  +I G L+ LNVID N C+K EDLD
Sbjct: 121 NKK-ELLSEFYEVNALMMEEEGAIIAGLLVGLNVIDANFCMKGEDLD 166

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
d2cxfa1167 Rap2 interacting protein X (RUFY3) {Mouse (Mus mus 100.0
>d2cxfa1 a.256.1.1 (A:83-249) Rap2 interacting protein X (RUFY3) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: RUN domain-like
superfamily: RUN domain-like
family: RUN domain
domain: Rap2 interacting protein X (RUFY3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.4e-45  Score=324.47  Aligned_cols=167  Identities=56%  Similarity=0.955  Sum_probs=161.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHHHhhCCccc
Q psy1888          62 VIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLKPKKGLLGPKKELWDILQLVEKLNPEAS  141 (386)
Q Consensus        62 ~~ieR~NLl~~lK~sVK~LiE~~~~~~r~I~dd~~~L~~LC~~LE~iL~HGLK~k~~~~g~~~~fW~~l~~~~k~~P~~~  141 (386)
                      ++.||+||++.+|.+||+|++++.+.+++|||++++|++||.+||+||.||||.+.++||++++||++++.+++.+|.+.
T Consensus         1 ~~~er~~Ll~~~k~~vk~l~~~~~~~~~~i~~~~~~l~~Lc~~lE~iL~hGLK~~~~~~~~~~~~W~~l~~~~~~~~~~~   80 (167)
T d2cxfa1           1 MANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAA   80 (167)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCTTCHHHHHHHHHHHHHHTTTBCCCCCTTCCCCTTHHHHHTGGGTCTTHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhccCCcccCCChHHHHHHHHHHHHHHcCCcccccccCCCCcHHHHHHHHHHhCCcHH
Confidence            47899999999999999999999998999999999999999999999999999998889999999999999999999999


Q ss_pred             chhhhhccCCCCCCccchhHHHHHHHHhhhhHHHHHHHHHhCchhHHHhcccccCccCCccHHHHHHhhccccceecccc
Q psy1888         142 DITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLC  221 (386)
Q Consensus       142 d~i~~I~~L~~I~T~~GRgRAWIRlAL~eK~Ls~yL~~Ll~n~~~lL~~~Ye~~AlL~d~E~~vL~~lL~GLn~IdF~l~  221 (386)
                      ++++.|.++++++|+.||||||||+|||+|.|+.|++.+++++ .++++||+++|||+++++..|+++|+||++|+|+|+
T Consensus        81 ~~i~~i~~l~~v~t~~gr~RawIr~aL~~~~L~~~l~~l~~~~-~~l~~~Y~~~A~l~~~~~~~l~~~L~~L~~l~F~l~  159 (167)
T d2cxfa1          81 EITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKK-ELLSEFYEVNALMMEEEGAIIAGLLVGLNVIDANFC  159 (167)
T ss_dssp             HHHHHTTTCTTCCSHHHHHHHHHHHHHHTTCHHHHHHHHHTTT-TTHHHHBCSSCSTTSHHHHHHHHHGGGGTTCCCCCC
T ss_pred             HHHHHHHhccccCCchhhhHHHHHHHHHHChHHHHHHHHHhCh-HHHHHhcCCcccccCchHHHHHHHHhhcCceeEEee
Confidence            9999999999999999999999999999999999999999998 799999999999999988999999999999999999


Q ss_pred             cCCCCCCC
Q psy1888         222 VKEEDLDC  229 (386)
Q Consensus       222 lk~~~LD~  229 (386)
                      +++++||+
T Consensus       160 l~~~~Ld~  167 (167)
T d2cxfa1         160 MKGEDLDS  167 (167)
T ss_dssp             CCCCCCCC
T ss_pred             ccccccCC
Confidence            99999995