Psyllid ID: psy1929

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MVRFQRHSSPLSRVGSYISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRREKEALAQAAAKKYALVRTPSPELGDRSKTKKRKRKDR
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcHHHccccccccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccHHccccccccHHHHHHHHHHHHHHHHHHHHccccccEccccccHHHHHHHHHccccccccEEEEccccccccccccHHHHHccc
Coil and Loop (DISEMBL)
mvrfqrhssplsrvgsyisVKETHQIAEAQLEKNARLRDAFGiseyfvegssldptRREKEALAQAAAKKYAlvrtpspelgdrsktkkrkrkdr
Flexible Loop (DISEMBL)
mvrfqrhssplsrvgsyisvKETHQIAEAQLEKNARLRDAFGISEYfvegssldptRREKEALAQAAAKkyalvrtpspelgdrsktkkrkrkdr
Low Complexity Region (SEG)
MVRFQRHSSPLSRVGSYISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRRekealaqaaakkyalVRTPSPELGdrsktkkrkrkdr
Disordered region (IsUnstruct)
**********************************ARLRDAFGISEYFV***********************************************
Disordered Region (DISOPRED)
**************************************DAFGISEYFVEGS********************************************
Disordered Region (DISEMBL)
************RVGSYISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRREKEALAQAAAKKYALVRTPS*****************
Disordered Region (DISPRO)
***************SYISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRREKEALAQAAAKKY************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVRFQRHSSPLSRVGSYISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRREKEALAQAAAKKYALVRTPSPELGDRSKTKKRKRKDR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
Q8BTI8	2703	Serine/arginine repetitiv	yes	N/A	0.589	0.020	0.568	2e-11
Q9UQ35	2752	Serine/arginine repetitiv	yes	N/A	0.642	0.022	0.539	3e-11

>sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein 2 OS=Mus musculus GN=Srrm2 PE=1 SV=3

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 41/58 (70%), Gaps = 2/58 (3%)

Query: 20  VKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRREKEA--LAQAAAKKYALVR 75
           V ETHQ+AE   +KN RLR AFGIS+ +V+GSS DP RR +EA  +A    K Y+LVR
Sbjct: 118 VTETHQLAELNEKKNERLRAAFGISDSYVDGSSFDPQRRAREAKQIAPEPPKPYSLVR 175

Involved in pre-mRNA splicing. May function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome. May do so by stabilizing the catalytic center or the position of the RNA substrate. Binds to RNA.
Mus musculus (taxid: 10090)

>sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein 2 OS=Homo sapiens GN=SRRM2 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 15  GSYISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRREKEA--LAQAAAKKYA 72
           G   +V ETHQ+AE   +KN RLR AFGIS+ +V+GSS DP RR +EA   A    K Y+
Sbjct: 113 GQRPAVTETHQLAELNEKKNERLRAAFGISDSYVDGSSFDPQRRAREAKQPAPEPPKPYS 172

Query: 73  LVR 75
           LVR
Sbjct: 173 LVR 175

Involved in pre-mRNA splicing. May function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome. May do so by stabilizing the catalytic center or the position of the RNA substrate (By similarity). Binds to RNA.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
242017839	660	hypothetical protein Phum_PHUM431970 [Pe	0.810	0.116	0.551	1e-16
312384346	201	hypothetical protein AND_02240 [Anophele	0.831	0.393	0.5	1e-15
383865289	1067	PREDICTED: uncharacterized protein LOC10	0.8	0.071	0.675	2e-15
321468954	218	hypothetical protein DAPPUDRAFT_197118 [	0.663	0.288	0.692	2e-15
328780193	1054	PREDICTED: hypothetical protein LOC72595	0.8	0.072	0.675	2e-15
350411961	1056	PREDICTED: hypothetical protein LOC10074	0.8	0.071	0.675	3e-15
307212634	814	hypothetical protein EAI_02470 [Harpegna	0.715	0.083	0.661	1e-14
380030277	210	PREDICTED: serine/arginine repetitive ma	0.789	0.357	0.671	1e-14
357625584	982	hypothetical protein KGM_00389 [Danaus p	0.610	0.059	0.666	3e-14
195375174	1083	GJ12538 [Drosophila virilis] gi|19415353	0.663	0.058	0.478	3e-14

>gi|242017839|ref|XP_002429393.1| hypothetical protein Phum_PHUM431970 [Pediculus humanus corporis] gi|212514312|gb|EEB16655.1| hypothetical protein Phum_PHUM431970 [Pediculus humanus corporis]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 63/87 (72%), Gaps = 10/87 (11%)

Query: 18  ISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRR---------EKEALAQAAA 68
           ++V+ETHQIAEAQ EKNA+LR+AFGISEYFVEGSSLDP R+          ++  + A  
Sbjct: 116 VAVRETHQIAEAQQEKNAKLREAFGISEYFVEGSSLDPQRKVKEAAAKAAAEDTKSTATT 175

Query: 69  KKYALVRTPSPELGDRSKTKKRKRKDR 95
           +KY LVRTPSP   ++   KKRK+++R
Sbjct: 176 QKYELVRTPSP-APEKEIVKKRKKRER 201

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312384346|gb|EFR29092.1| hypothetical protein AND_02240 [Anopheles darlingi]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 61/100 (61%), Gaps = 21/100 (21%)

Query: 2   VRFQRHSSPLSR--VGSYISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRRE 59
           +RF   +SP     V    SV+ETH IA+AQ EKNA+LRDAFGIS+YFVEG+S D  R+ 
Sbjct: 43  IRFNVDNSPPQDDLVDPPDSVRETHHIAQAQQEKNAKLRDAFGISQYFVEGTSFDQDRKA 102

Query: 60  KEALAQAAA-------------------KKYALVRTPSPE 80
           KE LA++ A                   K+YALVRTPSPE
Sbjct: 103 KEDLAKSEALQKELAEKEKAKELERANRKRYALVRTPSPE 142

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865289|ref|XP_003708107.1| PREDICTED: uncharacterized protein LOC100875657 [Megachile rotundata]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 1/77 (1%)

Query: 18  ISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRREKEALAQAAAKK-YALVRT 76
           ++V+ETHQIAEAQ EKNA+LR+AFGISE+FVEGSSLDP R  +EA A+AAA K Y LVRT
Sbjct: 111 VNVRETHQIAEAQQEKNAKLREAFGISEFFVEGSSLDPERHAREAEARAAASKVYELVRT 170

Query: 77  PSPELGDRSKTKKRKRK 93
           PSP     S  +K+KRK
Sbjct: 171 PSPVPNTTSSPEKKKRK 187

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321468954|gb|EFX79936.1| hypothetical protein DAPPUDRAFT_197118 [Daphnia pulex]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 50/65 (76%), Gaps = 2/65 (3%)

Query: 18  ISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRREKEALAQAAA--KKYALVR 75
           I VKETHQIA AQ EKN  LR AFGIS+YFVEGSSLDP R+ +E  A+ AA  K Y +VR
Sbjct: 119 IVVKETHQIAAAQEEKNRSLRQAFGISDYFVEGSSLDPNRKIRETAAKQAAEQKTYTIVR 178

Query: 76  TPSPE 80
           TPSPE
Sbjct: 179 TPSPE 183

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780193|ref|XP_001121745.2| PREDICTED: hypothetical protein LOC725959 [Apis mellifera]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 1/77 (1%)

Query: 18  ISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRREKEALAQAAAKK-YALVRT 76
           ++V+ETHQIAEAQ EKNA+LR+AFGISE+FVEGSSLDP R  +EA A+AAA K Y LVRT
Sbjct: 111 VNVRETHQIAEAQQEKNAKLREAFGISEFFVEGSSLDPERHAREAEARAAASKVYELVRT 170

Query: 77  PSPELGDRSKTKKRKRK 93
           PSP     S  +K+KRK
Sbjct: 171 PSPAPDTTSAPEKKKRK 187

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411961|ref|XP_003489501.1| PREDICTED: hypothetical protein LOC100741699 [Bombus impatiens]

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 1/77 (1%)

Query: 18  ISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRREKEALAQAAAKK-YALVRT 76
           ++V+ETHQIAEAQ EKNA+LR+AFGISE+FVEGSSLDP R  +EA A+AAA K Y LVRT
Sbjct: 111 VNVRETHQIAEAQQEKNAKLREAFGISEFFVEGSSLDPERHAREAEARAAASKVYELVRT 170

Query: 77  PSPELGDRSKTKKRKRK 93
           PSP     S  +K+KRK
Sbjct: 171 PSPAPDTTSVPEKKKRK 187

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212634|gb|EFN88337.1| hypothetical protein EAI_02470 [Harpegnathos saltator]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 55/71 (77%), Gaps = 3/71 (4%)

Query: 12  SRVGSYISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDP---TRREKEALAQAAA 68
           S + S +SV+ETHQIAEAQ EKNA+LR+AFGISE+FVEGSSLDP    R  +   A AA+
Sbjct: 92  SNMRSVVSVRETHQIAEAQQEKNAKLREAFGISEFFVEGSSLDPERHAREAEARAAAAAS 151

Query: 69  KKYALVRTPSP 79
           K Y LVRTPSP
Sbjct: 152 KVYELVRTPSP 162

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380030277|ref|XP_003698777.1| PREDICTED: serine/arginine repetitive matrix protein 2-like [Apis florea]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 61/76 (80%), Gaps = 1/76 (1%)

Query: 18  ISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRREKEALAQAAAKK-YALVRT 76
           ++V+ETHQIAEAQ EKNA+LR+AFGISE+FVEGSSLDP R  +EA A+AAA K Y LVRT
Sbjct: 111 VNVRETHQIAEAQQEKNAKLREAFGISEFFVEGSSLDPERHAREAEARAAASKVYELVRT 170

Query: 77  PSPELGDRSKTKKRKR 92
           PSP     S  +K+KR
Sbjct: 171 PSPAPDTTSAPEKKKR 186

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625584|gb|EHJ75983.1| hypothetical protein KGM_00389 [Danaus plexippus]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/63 (66%), Positives = 48/63 (76%), Gaps = 5/63 (7%)

Query: 18  ISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRREKEALAQAAAKKYALVRTP 77
           ++V+ETH +AEAQ EKNARLRDAFGIS  FVEG+SLDP RR     A+  A KY LVRTP
Sbjct: 115 VAVRETHAVAEAQQEKNARLRDAFGISPRFVEGTSLDPERR-----AREEALKYPLVRTP 169

Query: 78  SPE 80
           S E
Sbjct: 170 SHE 172

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195375174|ref|XP_002046378.1| GJ12538 [Drosophila virilis] gi|194153536|gb|EDW68720.1| GJ12538 [Drosophila virilis]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 55/94 (58%), Gaps = 31/94 (32%)

Query: 18  ISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRREKEALAQAAA--------- 68
           ++V+ETHQIAEAQ +KNA+LR+AF ISEYFVEGSS D  R+ KE LA++ A         
Sbjct: 113 VAVRETHQIAEAQQQKNAKLREAFNISEYFVEGSSFDSDRKAKEDLAKSVALQKELDAQR 172

Query: 69  ----------------------KKYALVRTPSPE 80
                                 K+YALVRTPSPE
Sbjct: 173 ESLAAAATAAAAAAGGKDKETGKRYALVRTPSPE 206

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
FB|FBgn0035253	1636	CG7971 [Drosophila melanogaste	0.421	0.024	0.725	4.4e-09
UNIPROTKB|I3LCW3	2732	SRRM2 "Uncharacterized protein	0.463	0.016	0.590	2e-06
UNIPROTKB|Q9UQ35	2752	SRRM2 "Serine/arginine repetit	0.463	0.015	0.590	2e-06
UNIPROTKB|F1MI03	2724	SRRM2 "Uncharacterized protein	0.463	0.016	0.590	2.4e-06
MGI|MGI:1923206	2703	Srrm2 "serine/arginine repetit	0.410	0.014	0.641	3.2e-06
ZFIN|ZDB-GENE-050522-399	1282	srrm2 "serine/arginine repetit	0.568	0.042	0.444	3.4e-05

FB|FBgn0035253 CG7971 [Drosophila melanogaster (taxid:7227)]

 Score = 148 (57.2 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 29/40 (72%), Positives = 34/40 (85%)

Query:    19 SVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRR 58
             S ++THQIAEAQ +KNARLR+AF ISEYFVEGSS D  R+
Sbjct:   339 SARDTHQIAEAQQQKNARLREAFNISEYFVEGSSFDGDRK 378

GO:0008380 "RNA splicing" evidence=ISS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071011 "precatalytic spliceosome" evidence=IDA

UNIPROTKB|I3LCW3 SRRM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 127 (49.8 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 26/44 (59%), Positives = 32/44 (72%)

Query:    15 GSYISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRR 58
             G   +V ETHQ+AE   +KN RLR AFGIS+ +V+GSS DP RR
Sbjct:   113 GQRPAVTETHQLAELNEKKNERLRAAFGISDSYVDGSSFDPQRR 156

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0070742 "C2H2 zinc finger domain binding" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

UNIPROTKB|Q9UQ35 SRRM2 "Serine/arginine repetitive matrix protein 2" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 26/44 (59%), Positives = 32/44 (72%)

Query:    15 GSYISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRR 58
             G   +V ETHQ+AE   +KN RLR AFGIS+ +V+GSS DP RR
Sbjct:   113 GQRPAVTETHQLAELNEKKNERLRAAFGISDSYVDGSSFDPQRR 156

GO:0003723 "RNA binding" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0016607 "nuclear speck" evidence=IDA

GO:0070742 "C2H2 zinc finger domain binding" evidence=IDA

GO:0015030 "Cajal body" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1MI03 SRRM2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 127 (49.8 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
 Identities = 26/44 (59%), Positives = 32/44 (72%)

Query:    15 GSYISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRR 58
             G   +V ETHQ+AE   +KN RLR AFGIS+ +V+GSS DP RR
Sbjct:   113 GQRPAVTETHQLAELNEKKNERLRAAFGISDSYVDGSSFDPQRR 156

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0070742 "C2H2 zinc finger domain binding" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

MGI|MGI:1923206 Srrm2 "serine/arginine repetitive matrix 2" [Mus musculus (taxid:10090)]

 Score = 125 (49.1 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 25/39 (64%), Positives = 30/39 (76%)

Query:    20 VKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRR 58
             V ETHQ+AE   +KN RLR AFGIS+ +V+GSS DP RR
Sbjct:   118 VTETHQLAELNEKKNERLRAAFGISDSYVDGSSFDPQRR 156

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008380 "RNA splicing" evidence=IEA

GO:0015030 "Cajal body" evidence=ISO

GO:0016607 "nuclear speck" evidence=ISO

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0070742 "C2H2 zinc finger domain binding" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

ZFIN|ZDB-GENE-050522-399 srrm2 "serine/arginine repetitive matrix 2" [Danio rerio (taxid:7955)]

 Score = 112 (44.5 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 24/54 (44%), Positives = 31/54 (57%)

Query:     5 QRHSSPLSRVGSYISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRR 58
             Q    P        +V ETH +A A  +KN RLR AFGIS  +V+GSS +P R+
Sbjct:   101 QERQEPAPPPTEKTAVTETHALAAANQQKNDRLRQAFGISSDYVDGSSFNPDRK 154


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.363    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       95        67   0.00091  102 3  11 22  0.44    28
                                                     29  0.49    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  424 (45 KB)
  Total size of DFA:  73 KB (2062 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.13u 0.08s 8.21t   Elapsed:  00:00:03
  Total cpu time:  8.13u 0.08s 8.21t   Elapsed:  00:00:03
  Start:  Thu Aug 15 15:41:17 2013   End:  Thu Aug 15 15:41:20 2013

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UQ35	SRRM2_HUMAN	No assigned EC number	0.5396	0.6421	0.0221	yes	N/A
Q8BTI8	SRRM2_MOUSE	No assigned EC number	0.5689	0.5894	0.0207	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
KOG1869|consensus	425		98.76

>KOG1869|consensus

Probab=98.76  E-value=6e-09  Score=87.38  Aligned_cols=66  Identities=27%  Similarity=0.277  Sum_probs=52.8

Q ss_pred             CCCCCCChhhhHHHHHHHHHHHHHHHHHhCCCCccccCCCCChhHHHHHHHHH--HHhhcchhccCCC
Q psy1929          13 RVGSYISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRREKEALAQ--AAAKKYALVRTPS   78 (95)
Q Consensus        13 ~~~~r~~~~etH~lA~ak~~en~rlr~AfGIs~dYveGssFd~er~~kea~~~--~~~k~y~lv~~~s   78 (95)
                      .+..+++.++||++|++.++.++.+|.||||+.+||.|++|+....+-.....  .....|.++.+.+
T Consensus       109 ~~~qe~S~teThqlara~eeq~e~~raAlgL~e~qv~gSs~~~~n~~~~~g~~~r~e~r~~hsk~d~d  176 (425)
T KOG1869|consen  109 QEDQEMSSTETHQLARATEEQHEHERAALGLKELQVQGSSEKGKNFESILGPQKRKETRGFHSKNDDD  176 (425)
T ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHHHhCcchhhcccccccccchhhhhccccccCCccccchhccc
Confidence            44568999999999999999999999999999999999999988766665442  3344455555444

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00