Psyllid ID: psy2060

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
LKQRNRLHIKLQYQVDLTNGPFQPYLSGLPDNEGLEKRVQTFVDGGHRTLDLLHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRADSI
Secondary Structure (PSIPRED)
cccccccEEEEEEEEcccccccccccccccccccccccEEEEEcccccccccEEEccccccccccccccccccccccccccccEEEEcccccEEEcccccccccccccccccccccccccccEEEcccccccEEEEEEEEEEEccccEEEEEEccccccccEEEEEEEccccEEEEEEEccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccEEEccccHccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHcccccccccccEEccccccccccccccccccccccccEEEccccccccccccccEEEEEccccccccEEEEcccccccEEEEEEEEEEEcccEEEEEcccccccccEEEEEEEccccEEEEEEEcccccEEEEccccc
Coil and Loop (DISEMBL)
lkqrnrlhiklqyqvdltngpfqpylsglpdneglEKRVQTFVDGGHRTLDLLHDMgaryhwgdtcetditksdckgvcspgatcslnpsggyicddcslagsyehYDRLCRLRarsfpknsfltfpalkqRNRLHIKLQFStlhdsglllyngrynerhDFIALeltdsgrsvqfSWSLGSEVARLNRADSI
Flexible Loop (DISEMBL)
lkqrnrlhiklqyqvdltngpFQPYLSGLPDNEGLEKRVQTFVDGGHRTLDLLHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELtdsgrsvqfswslgsevarlnradsi
Low Complexity Region (SEG)
LKQRNRLHIKLQYQVDLTNGPFQPYLSGLPDNEGLEKRVQTFVDGGHRTLDLLHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRADSI
Disordered region (IsUnstruct)
******LHIKLQYQVDLTNGPFQPYLSGLPDNEGLEKRVQTFVDGGHRTLDLLHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSL*************
Disordered Region (DISOPRED)
*********KLQYQVDLTNGPFQPYLSGLPDNEGLEKRVQTFVDGGHRTLDLLHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLN*****
Disordered Region (DISEMBL)
LKQRNRLHIKLQYQVDLTNGPFQPYLSGLPDNEGLEKRVQTFVDGGHRTLDLLHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRADSI
Disordered Region (DISPRO)
****NRLHIKLQYQVDLTNGPFQPYLSGLPDNEGLEKRVQTFVDGGHRTLDLLHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LKQRNRLHIKLQYQVDLTNGPFQPYLSGLPDNEGLEKRVQTFVDGGHRTLDLLHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRADSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
Q9V5N8	3579	Protocadherin-like wing p	yes	N/A	0.606	0.032	0.457	4e-21
Q9NYQ7	3312	Cadherin EGF LAG seven-pa	yes	N/A	0.590	0.034	0.45	5e-21
O88278	3313	Cadherin EGF LAG seven-pa	yes	N/A	0.590	0.034	0.45	5e-21
Q91ZI0	3301	Cadherin EGF LAG seven-pa	yes	N/A	0.575	0.033	0.452	3e-20
Q9NYQ6	3014	Cadherin EGF LAG seven-pa	no	N/A	0.585	0.037	0.458	3e-19
O35161	3034	Cadherin EGF LAG seven-pa	no	N/A	0.575	0.036	0.422	6e-18
Q9HCU4	2923	Cadherin EGF LAG seven-pa	no	N/A	0.632	0.041	0.403	8e-18
Q9QYP2	2144	Cadherin EGF LAG seven-pa	no	N/A	0.621	0.055	0.409	9e-18
Q9R0M0	2920	Cadherin EGF LAG seven-pa	no	N/A	0.621	0.041	0.401	1e-16
Q2PZL6	4981	Protocadherin Fat 4 OS=Mu	no	N/A	0.585	0.022	0.317	1e-07

>sp|Q9V5N8|STAN_DROME Protocadherin-like wing polarity protein stan OS=Drosophila melanogaster GN=stan PE=1 SV=4

 Score =  100 bits (250), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/129 (45%), Positives = 77/129 (59%), Gaps = 12/129 (9%)

Query: 61   HWGDTCETDITK-SDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFP 119
            H G  CET +     C     P  TC     GG  C     +     Y   C LRAR+F 
Sbjct: 1512 HTGQNCETGVGHLRPC-----PSETCE----GGLSCLSNYPSSQPPPYTATCELRARAFG 1562

Query: 120  KNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWS 179
            +NSFLTF +LKQR+R ++KL+F+T+ ++GLLLYNGRYNE HDFIALE+ +    V FS+S
Sbjct: 1563 RNSFLTFESLKQRHRFNLKLRFATVQENGLLLYNGRYNELHDFIALEIHEG--HVSFSFS 1620

Query: 180  LGSEVARLN 188
            LG    R++
Sbjct: 1621 LGDHSERIS 1629

Involved in the fz signaling pathway that controls wing tissue polarity. Also mediates homophilic cell adhesion. May play a role in initiating prehair morphogenesis. May play a critical role in tissue polarity and in formation of normal dendrite fields.
Drosophila melanogaster (taxid: 7227)

>sp|Q9NYQ7|CELR3_HUMAN Cadherin EGF LAG seven-pass G-type receptor 3 OS=Homo sapiens GN=CELSR3 PE=1 SV=2

 Score =  100 bits (249), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 72/120 (60%), Gaps = 6/120 (5%)

Query: 63   GDTCETDITKSDC-KGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
            G+ CE D     C  GVC  G TC+  P+GG+ C  C   G++E     C + ARSFP +
Sbjct: 1467 GEDCELDTEAGRCVPGVCRNGGTCTDAPNGGFRCQ-CPAGGAFE--GPRCEVAARSFPPS 1523

Query: 122  SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
            SF+ F  L+QR  L + L F+T+  SGLL YNGR NE+HDF+ALEL      V+ ++S G
Sbjct: 1524 SFVMFRGLRQRFHLTLSLSFATVQQSGLLFYNGRLNEKHDFLALELVAG--QVRLTYSTG 1581

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Homo sapiens (taxid: 9606)

>sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor 3 OS=Rattus norvegicus GN=Celsr3 PE=2 SV=1

 Score =  100 bits (249), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 72/120 (60%), Gaps = 6/120 (5%)

Query: 63   GDTCETDITKSDC-KGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
            G+ CE D     C  GVC  G TC+  P+GG+ C  C   G++E     C + ARSFP +
Sbjct: 1458 GEDCELDTEAGRCVPGVCRNGGTCTNAPNGGFRCQ-CPAGGAFE--GPRCEVAARSFPPS 1514

Query: 122  SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
            SF+ F  L+QR  L + L F+T+  SGLL YNGR NE+HDF+ALEL      V+ ++S G
Sbjct: 1515 SFVMFRGLRQRFHLTLSLSFATVQPSGLLFYNGRLNEKHDFLALELVAG--QVRLTYSTG 1572

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Rattus norvegicus (taxid: 10116)

>sp|Q91ZI0|CELR3_MOUSE Cadherin EGF LAG seven-pass G-type receptor 3 OS=Mus musculus GN=Celsr3 PE=2 SV=2

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 70/117 (59%), Gaps = 6/117 (5%)

Query: 66   CETDITKSDC-KGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKNSFL 124
            CE D     C  GVC  G TC+  P+GG+ C  C   G++E     C + ARSFP +SF+
Sbjct: 1459 CELDTEAGRCVPGVCRNGGTCTNAPNGGFRCQ-CPAGGAFE--GPRCEVAARSFPPSSFV 1515

Query: 125  TFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
             F  L+QR  L + L F+T+  SGLL YNGR NE+HDF+ALEL      V+ ++S G
Sbjct: 1516 MFRGLRQRFHLTLSLSFATVQPSGLLFYNGRLNEKHDFLALELVAG--QVRLTYSTG 1570

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Mus musculus (taxid: 10090)

>sp|Q9NYQ6|CELR1_HUMAN Cadherin EGF LAG seven-pass G-type receptor 1 OS=Homo sapiens GN=CELSR1 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 67/120 (55%), Gaps = 7/120 (5%)

Query: 63   GDTCETDITKSDC-KGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
            G+ CE D     C  GVC  G TC     GG+ C      G YE     C +  RSFP  
Sbjct: 1395 GEHCEVDARSGRCANGVCKNGGTCVNLLIGGFHC--VCPPGEYER--PYCEVTTRSFPPQ 1450

Query: 122  SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
            SF+TF  L+QR    I L F+T   +GLLLYNGR+NE+HDFIALE+ D    VQ ++S G
Sbjct: 1451 SFVTFRGLRQRFHFTISLTFATQERNGLLLYNGRFNEKHDFIALEIVD--EQVQLTFSAG 1508

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Homo sapiens (taxid: 9606)

>sp|O35161|CELR1_MOUSE Cadherin EGF LAG seven-pass G-type receptor 1 OS=Mus musculus GN=Celsr1 PE=2 SV=3

 Score = 90.5 bits (223), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 65/116 (56%), Gaps = 5/116 (4%)

Query: 63   GDTCETDITKSDC-KGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
            G+ C+ ++    C  GVC  G TC     GG+ C      G YEH    C +  RSFP  
Sbjct: 1410 GEHCQVNVRSGRCASGVCKNGGTCVNLLIGGFHC--VCPPGEYEH--PYCEVSTRSFPPQ 1465

Query: 122  SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFS 177
            SF+TF  L+QR    + L F+T   + LLLYNGR+NE+HDFIALE+ +    + FS
Sbjct: 1466 SFVTFRGLRQRFHFTVSLAFATQDRNALLLYNGRFNEKHDFIALEIVEEQLQLTFS 1521

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Mus musculus (taxid: 10090)

>sp|Q9HCU4|CELR2_HUMAN Cadherin EGF LAG seven-pass G-type receptor 2 OS=Homo sapiens GN=CELSR2 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 7/129 (5%)

Query: 61   HWGDTCETDITKSDC-KGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFP 119
            + G+ CE       C  GVC  G TC     GG+ CD C  +G +E     C++  RSFP
Sbjct: 1318 YTGEHCEVSARSGRCTPGVCKNGGTCVNLLVGGFKCD-CP-SGDFEK--PYCQVTTRSFP 1373

Query: 120  KNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWS 179
             +SF+TF  L+QR    + L F+T    GLLLYNGR+NE+HDF+ALE+      VQ ++S
Sbjct: 1374 AHSFITFRGLRQRFHFTLALSFATKERDGLLLYNGRFNEKHDFVALEVIQ--EQVQLTFS 1431

Query: 180  LGSEVARLN 188
             G     ++
Sbjct: 1432 AGESTTTVS 1440

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Homo sapiens (taxid: 9606)

>sp|Q9QYP2|CELR2_RAT Cadherin EGF LAG seven-pass G-type receptor 2 (Fragment) OS=Rattus norvegicus GN=Celsr2 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/127 (40%), Positives = 70/127 (55%), Gaps = 7/127 (5%)

Query: 63  GDTCETDITKSDC-KGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
           G+ CE       C  GVC  G TC     GG+ CD C  +G +E     C++  RSFP  
Sbjct: 545 GEHCEVSARSGRCTPGVCKNGGTCVNLLVGGFKCD-CP-SGDFEK--PFCQVTTRSFPAR 600

Query: 122 SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
           SF+TF  L+QR    + L F+T    GLLLYNGR+NE+HDF+ALE+      VQ ++S G
Sbjct: 601 SFITFRGLRQRFHFTLALSFATKERDGLLLYNGRFNEKHDFVALEVIQ--EQVQLTFSAG 658

Query: 182 SEVARLN 188
                ++
Sbjct: 659 ESTTTVS 665

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Rattus norvegicus (taxid: 10116)

>sp|Q9R0M0|CELR2_MOUSE Cadherin EGF LAG seven-pass G-type receptor 2 OS=Mus musculus GN=Celsr2 PE=1 SV=2

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 68/127 (53%), Gaps = 7/127 (5%)

Query: 63   GDTCETDITKSDC-KGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
            G+ CE       C  GVC  G TC     GG  CD C  +G +E     C++  RSFP  
Sbjct: 1321 GEHCEASTHSGRCTPGVCKNGGTCVNLLVGGIKCD-CP-SGHFEK--PFCQVTTRSFPAR 1376

Query: 122  SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
             F+TF  L QR    + L F+T   +GLLLYNGR+NE+HDF+ALE+      VQ ++S G
Sbjct: 1377 PFITFRGLHQRFHFTLALSFATKERNGLLLYNGRFNEKHDFVALEVIQ--EQVQLTFSAG 1434

Query: 182  SEVARLN 188
                 ++
Sbjct: 1435 ESTTTVS 1441

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Mus musculus (taxid: 10090)

>sp|Q2PZL6|FAT4_MOUSE Protocadherin Fat 4 OS=Mus musculus GN=Fat4 PE=1 SV=2

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 16/129 (12%)

Query: 63   GDTCETDITKSDCKGVCSPGATCSLNPSG--GYICDDCSLAGSYEHYDRLCRLRARSFPK 120
            G  CE+ +   +C   C  G +C    SG   Y C  C      +H    C L +  F +
Sbjct: 3934 GKMCESSVNYCECNP-CFNGGSCQ---SGVESYYCH-CPFGVFGKH----CELNSYGFEE 3984

Query: 121  NSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYN--GRYNERHDFIALELTDSGRSVQFSW 178
             S++ FP+L   N  +I ++F+T+    LLLYN   +  ER +F+ALE+ +    ++FS+
Sbjct: 3985 LSYMEFPSLDPNNN-YIYVKFATIKSHALLLYNYDNQTGERAEFLALEIAE--ERLRFSY 4041

Query: 179  SLGSEVARL 187
            +LGS   +L
Sbjct: 4042 NLGSGTYKL 4050

May function in the regulation of planar cell polarity. Cadherins are cell-cell interaction molecules.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
328710949	3166	PREDICTED: protocadherin-like wing polar	0.637	0.038	0.685	1e-44
328710951	3165	PREDICTED: protocadherin-like wing polar	0.647	0.039	0.674	1e-44
91090474	3246	PREDICTED: similar to cadherin [Triboliu	0.658	0.039	0.515	2e-30
270014310	3257	starry night [Tribolium castaneum]	0.658	0.038	0.515	3e-30
307210796	3166	Protocadherin-like wing polarity protein	0.626	0.038	0.552	2e-29
340723065	3163	PREDICTED: protocadherin-like wing polar	0.626	0.038	0.52	3e-29
383849585	3164	PREDICTED: protocadherin-like wing polar	0.626	0.038	0.52	3e-29
350414007	3163	PREDICTED: protocadherin-like wing polar	0.626	0.038	0.52	3e-29
380014510	3167	PREDICTED: LOW QUALITY PROTEIN: protocad	0.626	0.038	0.488	9e-29
328778418	3163	PREDICTED: protocadherin-like wing polar	0.626	0.038	0.512	1e-28

>gi|328710949|ref|XP_001947627.2| PREDICTED: protocadherin-like wing polarity protein stan-like isoform 3 [Acyrthosiphon pisum]

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/124 (68%), Positives = 104/124 (83%), Gaps = 1/124 (0%)

Query: 63   GDTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
            GD CE ++   +CK G+C  GATC+   SGG++CDDCS AG++EHYD +CRLR+RSFPK+
Sbjct: 1433 GDNCEINLKHDECKPGICHSGATCTPLKSGGFLCDDCSPAGTFEHYDEVCRLRSRSFPKS 1492

Query: 122  SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
            SFLTFP+L+QR RLHI L+FSTL +SGLLLYNGRYNERHDFIALEL + GR +QFS+SLG
Sbjct: 1493 SFLTFPSLRQRYRLHISLKFSTLEESGLLLYNGRYNERHDFIALELVEGGRGMQFSFSLG 1552

Query: 182  SEVA 185
            SEV 
Sbjct: 1553 SEVT 1556

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328710951|ref|XP_003244410.1| PREDICTED: protocadherin-like wing polarity protein stan-like isoform 2 [Acyrthosiphon pisum]

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/126 (67%), Positives = 105/126 (83%), Gaps = 1/126 (0%)

Query: 63   GDTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
            GD CE ++   +CK G+C  GATC+   SGG++CDDCS AG++EHYD +CRLR+RSFPK+
Sbjct: 1433 GDNCEINLKHDECKPGICHSGATCTPLKSGGFLCDDCSPAGTFEHYDEVCRLRSRSFPKS 1492

Query: 122  SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
            SFLTFP+L+QR RLHI L+FSTL +SGLLLYNGRYNERHDFIALEL + GR +QFS+SLG
Sbjct: 1493 SFLTFPSLRQRYRLHISLKFSTLEESGLLLYNGRYNERHDFIALELVEGGRGMQFSFSLG 1552

Query: 182  SEVARL 187
            SEV  +
Sbjct: 1553 SEVTYV 1558

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090474|ref|XP_968232.1| PREDICTED: similar to cadherin [Tribolium castaneum]

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 90/130 (69%), Gaps = 3/130 (2%)

Query: 58   ARYHWGDTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRAR 116
            A  + G  CE +++   C   +C  G+TCS      +IC++CSL    EHY  LC L+ R
Sbjct: 1448 AHGYTGANCEVELSDDPCNPSMCKSGSTCSPKNGKSFICEECSLDAGSEHYTSLCELKTR 1507

Query: 117  SFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQF 176
            SF K+SFLTFP+LKQR+RLH+KL+F+T   +GLLLYNGRYNE HDFI+LE+ +    +QF
Sbjct: 1508 SFTKSSFLTFPSLKQRHRLHLKLRFATQSRNGLLLYNGRYNELHDFISLEIVND--QIQF 1565

Query: 177  SWSLGSEVAR 186
            S+SLGS V +
Sbjct: 1566 SFSLGSNVTK 1575

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014310|gb|EFA10758.1| starry night [Tribolium castaneum]

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 90/130 (69%), Gaps = 3/130 (2%)

Query: 58   ARYHWGDTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRAR 116
            A  + G  CE +++   C   +C  G+TCS      +IC++CSL    EHY  LC L+ R
Sbjct: 1448 AHGYTGANCEVELSDDPCNPSMCKSGSTCSPKNGKSFICEECSLDAGSEHYTSLCELKTR 1507

Query: 117  SFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQF 176
            SF K+SFLTFP+LKQR+RLH+KL+F+T   +GLLLYNGRYNE HDFI+LE+ +    +QF
Sbjct: 1508 SFTKSSFLTFPSLKQRHRLHLKLRFATQSRNGLLLYNGRYNELHDFISLEIVND--QIQF 1565

Query: 177  SWSLGSEVAR 186
            S+SLGS V +
Sbjct: 1566 SFSLGSNVTK 1575

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210796|gb|EFN87178.1| Protocadherin-like wing polarity protein stan [Harpegnathos saltator]

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/125 (55%), Positives = 87/125 (69%), Gaps = 4/125 (3%)

Query: 63   GDTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
            G+ CE  +    C  GVC  G+ C++  SGG+ C+ C +A S E    LC LRARSF   
Sbjct: 1421 GENCEISLDHDGCSPGVCKGGSQCTMKNSGGFTCEGCPVAAS-ESVTPLCELRARSFGPA 1479

Query: 122  SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
            +FLTF +L+QR+RLH++L+F+T    GLLLYNGRYNERHDFIALE+ DS   VQFS+SLG
Sbjct: 1480 TFLTFASLRQRHRLHLRLKFATELADGLLLYNGRYNERHDFIALEVVDS--KVQFSFSLG 1537

Query: 182  SEVAR 186
             EV R
Sbjct: 1538 DEVTR 1542

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723065|ref|XP_003399918.1| PREDICTED: protocadherin-like wing polarity protein stan-like [Bombus terrestris]

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/125 (52%), Positives = 88/125 (70%), Gaps = 4/125 (3%)

Query: 63   GDTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
            G+ CE  + K  C  G+C  G+ C++  +GG+ C+ C +  + E    LC L+ARSF   
Sbjct: 1417 GENCEISLNKDSCAPGICKGGSQCTMKTTGGFTCEGCPVT-TLESVTPLCELKARSFGSA 1475

Query: 122  SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
            +FLTF +L+QR+RLHIKL+F+T   +GLLLYNGRYNE+HDFIALE+ DS   VQFS+SLG
Sbjct: 1476 TFLTFASLRQRHRLHIKLRFATEAANGLLLYNGRYNEKHDFIALEIIDS--EVQFSFSLG 1533

Query: 182  SEVAR 186
             E+ R
Sbjct: 1534 DEITR 1538

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849585|ref|XP_003700425.1| PREDICTED: protocadherin-like wing polarity protein stan-like [Megachile rotundata]

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/125 (52%), Positives = 90/125 (72%), Gaps = 4/125 (3%)

Query: 63   GDTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
            G+ CE  + K  C+ GVC  G+ C++  +GG+ C+ C +  + E+   LC L+ARSF   
Sbjct: 1418 GENCEISLDKDPCEPGVCKGGSQCTIKTTGGFTCEGCPVT-TLENVTPLCELKARSFGPE 1476

Query: 122  SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
            +FLTF +LKQR+RLH+KL+F+T   +GLLLYNGRYNE+HDFIALE+ +S   VQFS+SLG
Sbjct: 1477 TFLTFASLKQRHRLHLKLKFATESANGLLLYNGRYNEKHDFIALEIIES--QVQFSFSLG 1534

Query: 182  SEVAR 186
             E+ R
Sbjct: 1535 DEITR 1539

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414007|ref|XP_003490178.1| PREDICTED: protocadherin-like wing polarity protein stan-like [Bombus impatiens]

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/125 (52%), Positives = 88/125 (70%), Gaps = 4/125 (3%)

Query: 63   GDTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
            G+ CE  + K  C  G+C  G+ C++  +GG+ C+ C +  + E    LC L+ARSF   
Sbjct: 1417 GENCEISLNKDSCAPGICKGGSQCTMKTTGGFTCEGCPVT-TLESVTPLCELKARSFGSA 1475

Query: 122  SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
            +FLTF +L+QR+RLHIKL+F+T   +GLLLYNGRYNE+HDFIALE+ DS   VQFS+SLG
Sbjct: 1476 TFLTFASLRQRHRLHIKLRFATEGANGLLLYNGRYNEKHDFIALEIIDS--EVQFSFSLG 1533

Query: 182  SEVAR 186
             E+ R
Sbjct: 1534 DEITR 1538

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014510|ref|XP_003691272.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin-like wing polarity protein stan-like [Apis florea]

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 91/125 (72%), Gaps = 4/125 (3%)

Query: 63   GDTCETDITKSDC-KGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
            G+ CE  + +  C +GVC  G+ C++  +GG+ C+ C +  + E+   LC L+ARSF   
Sbjct: 1418 GENCEISLDRDTCAQGVCKGGSQCTMKTTGGFTCEGCPVT-TLENVTPLCELKARSFGPA 1476

Query: 122  SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
            +FLTFP+L+QR+RLH++L+F+T   +GLLLYNGRYNE+HDF+ALE+ +S   V+FS+SLG
Sbjct: 1477 TFLTFPSLRQRHRLHVRLRFATEAANGLLLYNGRYNEKHDFVALEIIES--EVEFSFSLG 1534

Query: 182  SEVAR 186
             E+ R
Sbjct: 1535 DEITR 1539

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778418|ref|XP_624236.3| PREDICTED: protocadherin-like wing polarity protein stan-like [Apis mellifera]

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 89/125 (71%), Gaps = 4/125 (3%)

Query: 63   GDTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
            G+ CE  + K+ C  G+C  G+ C++  +GG+ C+ C +  + E+   LC L+ARSF   
Sbjct: 1418 GENCEISLDKNSCAPGICKGGSQCTMKTTGGFTCEGCPVT-TLENVTPLCELKARSFGPA 1476

Query: 122  SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
            +FLTF +L+QR+RL IKL+F+T   +GLLLYNGRYNE+HDFIALE+ DS   VQFS+SLG
Sbjct: 1477 TFLTFASLRQRHRLQIKLRFATEAANGLLLYNGRYNEKHDFIALEIIDS--EVQFSFSLG 1534

Query: 182  SEVAR 186
             E+ R
Sbjct: 1535 DEITR 1539

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
UNIPROTKB|F1MHH5	3300	CELSR3 "Uncharacterized protei	0.590	0.034	0.466	1.4e-20
UNIPROTKB|D4AC66	3303	Celsr3 "Cadherin EGF LAG seven	0.590	0.034	0.466	1.8e-20
UNIPROTKB|F1SKK7	3307	CELSR3 "Uncharacterized protei	0.590	0.034	0.466	1.8e-20
UNIPROTKB|Q9NYQ7	3312	CELSR3 "Cadherin EGF LAG seven	0.590	0.034	0.466	1.8e-20
RGD|621787	3313	Celsr3 "cadherin, EGF LAG seve	0.590	0.034	0.466	1.8e-20
UNIPROTKB|O88278	3313	Celsr3 "Cadherin EGF LAG seven	0.590	0.034	0.466	1.8e-20
UNIPROTKB|J9NZ15	3323	CELSR3 "Uncharacterized protei	0.590	0.034	0.458	2.4e-20
FB|FBgn0024836	3579	stan "starry night" [Drosophil	0.611	0.032	0.460	2.6e-20
UNIPROTKB|F1N812	3737	SLC26A6 "Uncharacterized prote	0.606	0.031	0.456	3.4e-20
MGI|MGI:1858236	3301	Celsr3 "cadherin, EGF LAG seve	0.575	0.033	0.470	1e-19

UNIPROTKB|F1MHH5 CELSR3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 261 (96.9 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 56/120 (46%), Positives = 75/120 (62%)

Query:    63 GDTCETDITKSDC-KGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
             G+ CE D     C  GVC  G TC+  P GG+ C  C   G++E   R C + ARSFP +
Sbjct:  1449 GEDCELDTEAGRCVPGVCRNGGTCANGPDGGFRCQ-CPAGGAFEG-PR-CEVAARSFPPS 1505

Query:   122 SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
             SF+ F  L+QR  L + L F+T+  SGLL YNGR NE+HDF+ALEL  +G+ V+ ++S G
Sbjct:  1506 SFVMFRGLRQRFHLTLSLSFATVQPSGLLFYNGRLNEKHDFLALELV-AGQ-VRLTYSTG 1563

GO:0007413 "axonal fasciculation" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|D4AC66 Celsr3 "Cadherin EGF LAG seven-pass G-type receptor 3" [Rattus norvegicus (taxid:10116)]

 Score = 260 (96.6 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 56/120 (46%), Positives = 76/120 (63%)

Query:    63 GDTCETDITKSDC-KGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
             G+ CE D     C  GVC  G TC+  P+GG+ C  C   G++E   R C + ARSFP +
Sbjct:  1458 GEDCELDTEAGRCVPGVCRNGGTCTNAPNGGFRCQ-CPAGGAFEG-PR-CEVAARSFPPS 1514

Query:   122 SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
             SF+ F  L+QR  L + L F+T+  SGLL YNGR NE+HDF+ALEL  +G+ V+ ++S G
Sbjct:  1515 SFVMFRGLRQRFHLTLSLSFATVQPSGLLFYNGRLNEKHDFLALELV-AGQ-VRLTYSTG 1572

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SKK7 CELSR3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 260 (96.6 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 56/120 (46%), Positives = 75/120 (62%)

Query:    63 GDTCETDITKSDC-KGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
             G+ CE D     C  GVC  G TC+  P GG+ C  C   G++E   R C + ARSFP +
Sbjct:  1461 GEDCELDTEAGRCVPGVCRNGGTCADGPDGGFRCQ-CPAGGAFEG-PR-CEVAARSFPPS 1517

Query:   122 SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
             SF+ F  L+QR  L + L F+T+  SGLL YNGR NE+HDF+ALEL  +G+ V+ ++S G
Sbjct:  1518 SFVMFRGLRQRFHLTLSLSFATVQPSGLLFYNGRLNEKHDFLALELV-AGQ-VRLTYSTG 1575

GO:0007413 "axonal fasciculation" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|Q9NYQ7 CELSR3 "Cadherin EGF LAG seven-pass G-type receptor 3" [Homo sapiens (taxid:9606)]

 Score = 260 (96.6 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 56/120 (46%), Positives = 76/120 (63%)

Query:    63 GDTCETDITKSDC-KGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
             G+ CE D     C  GVC  G TC+  P+GG+ C  C   G++E   R C + ARSFP +
Sbjct:  1467 GEDCELDTEAGRCVPGVCRNGGTCTDAPNGGFRCQ-CPAGGAFEG-PR-CEVAARSFPPS 1523

Query:   122 SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
             SF+ F  L+QR  L + L F+T+  SGLL YNGR NE+HDF+ALEL  +G+ V+ ++S G
Sbjct:  1524 SFVMFRGLRQRFHLTLSLSFATVQQSGLLFYNGRLNEKHDFLALELV-AGQ-VRLTYSTG 1581

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0007413 "axonal fasciculation" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

RGD|621787 Celsr3 "cadherin, EGF LAG seven-pass G-type receptor 3" [Rattus norvegicus (taxid:10116)]

 Score = 260 (96.6 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 56/120 (46%), Positives = 76/120 (63%)

Query:    63 GDTCETDITKSDC-KGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
             G+ CE D     C  GVC  G TC+  P+GG+ C  C   G++E   R C + ARSFP +
Sbjct:  1458 GEDCELDTEAGRCVPGVCRNGGTCTNAPNGGFRCQ-CPAGGAFEG-PR-CEVAARSFPPS 1514

Query:   122 SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
             SF+ F  L+QR  L + L F+T+  SGLL YNGR NE+HDF+ALEL  +G+ V+ ++S G
Sbjct:  1515 SFVMFRGLRQRFHLTLSLSFATVQPSGLLFYNGRLNEKHDFLALELV-AGQ-VRLTYSTG 1572

GO:0001764 "neuron migration" evidence=IEA;ISO

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0007413 "axonal fasciculation" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=ISO

GO:0042384 "cilium assembly" evidence=ISO

UNIPROTKB|O88278 Celsr3 "Cadherin EGF LAG seven-pass G-type receptor 3" [Rattus norvegicus (taxid:10116)]

 Score = 260 (96.6 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 56/120 (46%), Positives = 76/120 (63%)

Query:    63 GDTCETDITKSDC-KGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
             G+ CE D     C  GVC  G TC+  P+GG+ C  C   G++E   R C + ARSFP +
Sbjct:  1458 GEDCELDTEAGRCVPGVCRNGGTCTNAPNGGFRCQ-CPAGGAFEG-PR-CEVAARSFPPS 1514

Query:   122 SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
             SF+ F  L+QR  L + L F+T+  SGLL YNGR NE+HDF+ALEL  +G+ V+ ++S G
Sbjct:  1515 SFVMFRGLRQRFHLTLSLSFATVQPSGLLFYNGRLNEKHDFLALELV-AGQ-VRLTYSTG 1572

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|J9NZ15 CELSR3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 259 (96.2 bits), Expect = 2.4e-20, P = 2.4e-20
 Identities = 55/120 (45%), Positives = 75/120 (62%)

Query:    63 GDTCETDITKSDC-KGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
             G+ CE D     C  G+C  G TC+  P GG+ C  C   G++E   R C + ARSFP +
Sbjct:  1467 GEDCELDTEAGRCVPGICRNGGTCADGPDGGFRCQ-CPAGGAFEG-PR-CEVAARSFPPS 1523

Query:   122 SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
             SF+ F  L+QR  L + L F+T+  SGLL YNGR NE+HDF+ALEL  +G+ V+ ++S G
Sbjct:  1524 SFVMFRGLRQRFHLTLSLSFATVQPSGLLFYNGRLNEKHDFLALELV-AGQ-VRLTYSTG 1581

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

FB|FBgn0024836 stan "starry night" [Drosophila melanogaster (taxid:7227)]

 Score = 259 (96.2 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 59/128 (46%), Positives = 77/128 (60%)

Query:    61 HWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPK 120
             H G  CET +        C P  TC     GG  C     +     Y   C LRAR+F +
Sbjct:  1512 HTGQNCETGVGHLR---PC-PSETCE----GGLSCLSNYPSSQPPPYTATCELRARAFGR 1563

Query:   121 NSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSL 180
             NSFLTF +LKQR+R ++KL+F+T+ ++GLLLYNGRYNE HDFIALE+ +    V FS+SL
Sbjct:  1564 NSFLTFESLKQRHRFNLKLRFATVQENGLLLYNGRYNELHDFIALEIHEG--HVSFSFSL 1621

Query:   181 GSEVARLN 188
             G    R++
Sbjct:  1622 GDHSERIS 1629

GO:0005886 "plasma membrane" evidence=IEA;ISS

GO:0007156 "homophilic cell adhesion" evidence=ISS;IDA;TAS

GO:0004930 "G-protein coupled receptor activity" evidence=IEA;ISS

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS;IMP

GO:0016055 "Wnt receptor signaling pathway" evidence=IEP;IMP;NAS

GO:0007409 "axonogenesis" evidence=IMP;NAS

GO:0005911 "cell-cell junction" evidence=IDA

GO:0005057 "receptor signaling protein activity" evidence=ISM;IMP

GO:0016358 "dendrite development" evidence=IEP

GO:0007367 "segment polarity determination" evidence=IEP;IMP

GO:0016021 "integral to membrane" evidence=IEA;ISM;ISS;NAS

GO:0048813 "dendrite morphogenesis" evidence=IMP;TAS

GO:0007165 "signal transduction" evidence=ISS

GO:0004888 "transmembrane signaling receptor activity" evidence=ISS

GO:0050839 "cell adhesion molecule binding" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0004872 "receptor activity" evidence=ISS

GO:0016318 "ommatidial rotation" evidence=IMP;NAS

GO:0048057 "R3/R4 development" evidence=IMP

GO:0042067 "establishment of ommatidial planar polarity" evidence=IMP;TAS

GO:0007164 "establishment of tissue polarity" evidence=NAS

GO:0016319 "mushroom body development" evidence=IMP

GO:0030177 "positive regulation of Wnt receptor signaling pathway" evidence=NAS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=TAS

GO:0007464 "R3/R4 cell fate commitment" evidence=NAS

GO:0001736 "establishment of planar polarity" evidence=IMP;TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0001738 "morphogenesis of a polarized epithelium" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0050770 "regulation of axonogenesis" evidence=IDA

GO:0051963 "regulation of synapse assembly" evidence=IDA

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

GO:0070593 "dendrite self-avoidance" evidence=IMP

GO:0090175 "regulation of establishment of planar polarity" evidence=IGI

UNIPROTKB|F1N812 SLC26A6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 258 (95.9 bits), Expect = 3.4e-20, P = 3.4e-20
 Identities = 57/125 (45%), Positives = 71/125 (56%)

Query:    59 RYHW-GDTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRAR 116
             R H+ G+ CE D     C+ GVC  G TC+    GG+ C  C  AG +E     C L  R
Sbjct:  1124 RQHFSGENCEVDSRSGRCQPGVCRNGGTCTNGADGGFRCQ-CP-AGGFE--TPFCELSTR 1179

Query:   117 SFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQF 176
             SFP  SF+ F  L+QR  L + L FST+   GLLLYNGR NERHDF+A+E+      VQ 
Sbjct:  1180 SFPPRSFVMFRGLRQRFHLTLSLSFSTVEPGGLLLYNGRLNERHDFLAVEIIQG--QVQL 1237

Query:   177 SWSLG 181
              +S G
Sbjct:  1238 KYSTG 1242

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0008271 "secondary active sulfate transmembrane transporter activity" evidence=IEA

GO:0008272 "sulfate transport" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0007413 "axonal fasciculation" evidence=IEA

MGI|MGI:1858236 Celsr3 "cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila)" [Mus musculus (taxid:10090)]

 Score = 253 (94.1 bits), Expect = 1.0e-19, P = 1.0e-19
 Identities = 55/117 (47%), Positives = 74/117 (63%)

Query:    66 CETDITKSDC-KGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKNSFL 124
             CE D     C  GVC  G TC+  P+GG+ C  C   G++E   R C + ARSFP +SF+
Sbjct:  1459 CELDTEAGRCVPGVCRNGGTCTNAPNGGFRCQ-CPAGGAFEG-PR-CEVAARSFPPSSFV 1515

Query:   125 TFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
              F  L+QR  L + L F+T+  SGLL YNGR NE+HDF+ALEL  +G+ V+ ++S G
Sbjct:  1516 MFRGLRQRFHLTLSLSFATVQPSGLLFYNGRLNEKHDFLALELV-AGQ-VRLTYSTG 1570

GO:0001764 "neuron migration" evidence=IMP

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007166 "cell surface receptor signaling pathway" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IGI

GO:0042384 "cilium assembly" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	193
cd00110	151	cd00110, LamG, Laminin G domain; Laminin G-like do	1e-11
smart00282	132	smart00282, LamG, Laminin G domain	1e-07
pfam00054	131	pfam00054, Laminin_G_1, Laminin G domain	1e-05
pfam02210	124	pfam02210, Laminin_G_2, Laminin G domain	1e-04

>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 31/74 (41%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 115 ARSFPKNSFLTFPALK-QRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRS 173
             SF  +S++  P L   R RL I   F T   +GLLLY G  N   DF+ALEL D GR 
Sbjct: 1   GVSFSGSSYVRLPTLPAPRTRLSISFSFRTTSPNGLLLYAGSQN-GGDFLALELED-GR- 57

Query: 174 VQFSWSLGSEVARL 187
           +   + LGS    L
Sbjct: 58  LVLRYDLGSGSLVL 71

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules. Length = 151

>gnl|CDD|214598 smart00282, LamG, Laminin G domain

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 136 HIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARL 187
            I   F T   +GLLLY G      D++ALEL D GR +   + LGS  ARL
Sbjct: 1   SISFSFRTTSPNGLLLYAGSKG-GGDYLALELRD-GR-LVLRYDLGSGPARL 49

Length = 132

>gnl|CDD|215681 pfam00054, Laminin_G_1, Laminin G domain

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 141 FSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARL 187
           F T   SGLLLYNG      DF+ALEL D GR ++ S+ LGS  A +
Sbjct: 1   FRTTEPSGLLLYNGT-QTERDFLALELRD-GR-LEVSYDLGSGAAVV 44

Length = 131

>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 141 FSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSE 183
           F T   +GLLLY G  +   DF+ALEL D GR +   + LGS 
Sbjct: 1   FRTTQPNGLLLYAGGED-GLDFLALELED-GR-LVLRYDLGSG 40

This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily. Length = 124

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
KOG4289|consensus	2531		99.95
KOG4289|consensus	2531		99.46
KOG1219|consensus	4289		99.43
KOG1219|consensus	4289		99.16
PF00054	131	Laminin_G_1: Laminin G domain; InterPro: IPR012679	98.95
KOG3516|consensus	1306		98.94
KOG3514|consensus	1591		98.87
KOG3514|consensus	1591		98.87
cd00110	151	LamG Laminin G domain; Laminin G-like domains are	98.83
KOG3516|consensus	1306		98.76
smart00282	135	LamG Laminin G domain.	98.41
KOG1225|consensus	525		98.21
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	98.06
PF02210	128	Laminin_G_2: Laminin G domain; InterPro: IPR012680	98.03
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	97.64
KOG1214|consensus	1289		97.55
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	97.41
KOG1217|consensus	487		97.36
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.29
KOG1225|consensus	525		97.28
KOG4260|consensus	350		97.26
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.19
KOG1217|consensus	487		97.13
cd00053	36	EGF Epidermal growth factor domain, found in epide	96.96
smart00181	35	EGF Epidermal growth factor-like domain.	96.79
KOG1214|consensus	1289		96.72
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	96.28
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	96.17
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	95.83
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	95.77
KOG1836|consensus	1705		95.71
smart00051	63	DSL delta serrate ligand.	95.63
PF12662	24	cEGF: Complement Clr-like EGF-like	95.57
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	95.13
PF12662	24	cEGF: Complement Clr-like EGF-like	95.11
smart00181	35	EGF Epidermal growth factor-like domain.	95.07
KOG1226|consensus	783		94.98
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	94.9
cd00053	36	EGF Epidermal growth factor domain, found in epide	94.14
KOG0994|consensus	1758		94.1
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	94.03
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	93.81
PHA02887	126	EGF-like protein; Provisional	93.52
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	93.44
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	92.94
smart00051	63	DSL delta serrate ligand.	92.9
PHA02887	126	EGF-like protein; Provisional	92.88
KOG1226|consensus	783		92.69
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	91.56
KOG4260|consensus	350		91.45
KOG3509|consensus	964		90.58
PF01414	63	DSL: Delta serrate ligand; InterPro: IPR001774 Lig	88.65
KOG1836|consensus	1705		87.18
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	86.96
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	83.98
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	83.58
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	83.08
KOG0994|consensus	1758		83.06

>KOG4289|consensus

Probab=99.95  E-value=5.9e-28  Score=218.31  Aligned_cols=160  Identities=36%  Similarity=0.648  Sum_probs=142.7

Q ss_pred             CCCCCcee-cCCCCccCCCCcceeec---------CC--ccCCCCceeeCCCCCCCCcccccCCCCCCC-CCCCCCcEEe
Q psy2060          20 GPFQPYLS-GLPDNEGLEKRVQTFVD---------GG--HRTLDLLHDMGARYHWGDTCETDITKSDCK-GVCSPGATCS   86 (193)
Q Consensus        20 ~~~~~~~c-C~~g~~g~~~~c~~~~~---------gg--~~~~~~~~C~C~~g~~G~~C~~~~~~~~C~-~pC~~gg~C~   86 (193)
                      .|...+.| |||||+|..  ||+.+|         +|  ..-.++|.|.|.+||+|.+||.+.....|. ..|.|||+|+
T Consensus      1217 ~pvnglrCrCPpGFTgd~--CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~ 1294 (2531)
T KOG4289|consen 1217 HPVNGLRCRCPPGFTGDY--CETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCV 1294 (2531)
T ss_pred             cccCceeEeCCCCCCccc--ccchhHhhhcCCCCCCCceEEecCceeEEecCCccccceeeecccCccccceecCCCEEe
Confidence            45667789 999999998  999888         33  455789999999999999999887557899 9999999999


Q ss_pred             eCCCCceecccCCCCCCccccccccceecccCCCcceEEecCCCCCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEE
Q psy2060          87 LNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALE  166 (193)
Q Consensus        87 ~~~~~~~~C~~C~~g~~~~~~g~~C~~~~~sF~g~syl~~~~~~~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~  166 (193)
                      +...++|.|+ ||.+ ..+  +++|+..+.+|.+.+|+.+.....+.++.++|.|.|...+|+|+|+|  ++++||++|+
T Consensus      1295 ~~~nggf~c~-Cp~g-e~e--~prC~v~trSFp~~sfv~frglrqRfh~TlslsfaT~~~nGlL~ynG--nekhDFvale 1368 (2531)
T KOG4289|consen 1295 NLLNGGFCCH-CPYG-EFE--DPRCEVTTRSFPPESFVTFRGLRQRFHFTLSLSFATIERNGLLLYNG--NEKHDFVALE 1368 (2531)
T ss_pred             ecCCCceecc-CCCc-ccC--CCceEEEeeccCchheEEEeccccceEEEEEEEEEEeeecceEEecC--CcccceEeee
Confidence            9887999999 9987 333  99999999999999999999999999999999999999999999999  7899999999


Q ss_pred             ecCCeeEEEEEEeCCCceEEEEc
Q psy2060         167 LTDSGRSVQFSWSLGSEVARLNR  189 (193)
Q Consensus       167 l~~G~~~l~~~~~~g~g~~~l~s  189 (193)
                      ++++.  |+++|+.|...+++..
T Consensus      1369 vVd~q--vqltfS~Ges~t~v~p 1389 (2531)
T KOG4289|consen 1369 VVDEQ--VQLTFSAGESTTTVSP 1389 (2531)
T ss_pred             eeeee--EEEEEecccccceecC
Confidence            99999  9999999966555543

>KOG4289|consensus

Probab=99.46  E-value=1.5e-12  Score=119.87  Aligned_cols=97  Identities=26%  Similarity=0.496  Sum_probs=76.9

Q ss_pred             CCCC-CCCCCCcEEeeCCCCceecccCCCCCCccccccccceecc---cCCCcceEEecCCCC--CceeEEEEEEEeCCC
Q psy2060          73 SDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRAR---SFPKNSFLTFPALKQ--RNRLHIKLQFSTLHD  146 (193)
Q Consensus        73 ~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~~~---sF~g~syl~~~~~~~--~~~~~i~~~f~T~~~  146 (193)
                      +-|. .+|.|+|+|++.+ ++|.|+ ||.++.    |..|+..+.   -|.|.|-+.+.....  .-.+.++|.|||+..
T Consensus      1502 ~fCdsg~C~n~g~CvnrW-g~~~C~-CP~~fg----gk~c~~~m~~pq~frG~sl~sw~~~~~~vSvPwylsl~FRTr~a 1575 (2531)
T KOG4289|consen 1502 NFCDSGQCSNGGTCVNRW-GGFSCE-CPLGFG----GKGCCQGMAHPQHFRGHSLVSWEGLPSQVSVPWYLSLMFRTRRA 1575 (2531)
T ss_pred             cccCCCccCCCCeeeccc-CcEeec-CccccC----CcchhhccCCchhccccceeeecCCCcceecceEEEEEEEeecc
Confidence            4567 8999999999998 999999 999998    899988653   588888888765443  334678999999999


Q ss_pred             CeEEEEeecCCCCCceEEEEecCCeeEEEEEEe
Q psy2060         147 SGLLLYNGRYNERHDFIALELTDSGRSVQFSWS  179 (193)
Q Consensus       147 ~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~  179 (193)
                      +++||-... .+.+ -+.|+|.+|.  |++...
T Consensus      1576 d~vl~~~~~-~~rs-t~~lqld~g~--l~~~v~ 1604 (2531)
T KOG4289|consen 1576 DGVLMQAEF-GGRS-TYNLQLDDGT--LKYNVG 1604 (2531)
T ss_pred             ccEEEEEEe-CCCc-eEEEEEcCCE--EEEEec
Confidence            999997642 2333 4889999999  776543

>KOG1219|consensus

Probab=99.43  E-value=1.3e-13  Score=130.54  Aligned_cols=88  Identities=23%  Similarity=0.425  Sum_probs=77.7

Q ss_pred             eccCCCCCCcee-cCCCCccCCCCcceeec---------CC--ccCCCCceeeCCCCCCCCccccc-CCCCCCC-CCCCC
Q psy2060          16 DLTNGPFQPYLS-GLPDNEGLEKRVQTFVD---------GG--HRTLDLLHDMGARYHWGDTCETD-ITKSDCK-GVCSP   81 (193)
Q Consensus        16 ~~~~~~~~~~~c-C~~g~~g~~~~c~~~~~---------gg--~~~~~~~~C~C~~g~~G~~C~~~-~~~~~C~-~pC~~   81 (193)
                      .+...|.+.|.| |++.|+|++  ||.+++         ||  .-..++|.|.||.||||.+||.. ++  +|. ++|.+
T Consensus      3877 ~C~~~~~ggy~CkCpsqysG~~--CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~~Gi~--eCs~n~C~~ 3952 (4289)
T KOG1219|consen 3877 TCISQPKGGYKCKCPSQYSGNH--CEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEARGIS--ECSKNVCGT 3952 (4289)
T ss_pred             EecCCCCCceEEeCcccccCcc--cccccccccCCCCCCCCEEEecCCCeeEeCCCCccCceeeccccc--ccccccccC
Confidence            345667888999 999999998  998776         66  45568999999999999999988 66  999 99999


Q ss_pred             CcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          82 GATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        82 gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      ||.|++.+ ++|.|. |.+++.    |+.|..
T Consensus      3953 gg~C~n~~-gsf~Cn-cT~g~~----gr~c~~ 3978 (4289)
T KOG1219|consen 3953 GGQCINIP-GSFHCN-CTPGIL----GRTCCA 3978 (4289)
T ss_pred             CceeeccC-CceEec-cChhHh----cccCcc
Confidence            99999999 999999 999998    888865

>KOG1219|consensus

Probab=99.16  E-value=2.4e-10  Score=109.23  Aligned_cols=122  Identities=20%  Similarity=0.425  Sum_probs=101.3

Q ss_pred             CCceeeCCCCCCCCcccccCCCCCCC-CCCCCCcEEeeCC-CCceecccCCCCCCccccccccce-ecccCCCcceEEec
Q psy2060          51 DLLHDMGARYHWGDTCETDITKSDCK-GVCSPGATCSLNP-SGGYICDDCSLAGSYEHYDRLCRL-RARSFPKNSFLTFP  127 (193)
Q Consensus        51 ~~~~C~C~~g~~G~~C~~~~~~~~C~-~pC~~gg~C~~~~-~~~~~C~~C~~g~~~~~~g~~C~~-~~~sF~g~syl~~~  127 (193)
                      ....|.|+.||    |+..-  +.|. .||..+..|++.. ...|+|. ||.|.     -..|+- ...++.|.||..++
T Consensus      3631 r~a~ClC~~G~----Cp~~~--~~C~~~pcp~~~~Cvs~~~~~~~~cV-cP~gr-----~g~C~g~~elS~tGnSYveyr 3698 (4289)
T KOG1219|consen 3631 RTAACLCNRGF----CPVET--NQCAKSPCPAGNLCVSSVHNSTYTCV-CPIGR-----FGFCQGDFELSSTGNSYVEYR 3698 (4289)
T ss_pred             ccceeeecCCc----CCccc--CccccCCCcccCcccccccccceeEe-ccCcc-----cccCCCcceEeecCceeEEEE
Confidence            45789999998    88774  4999 9999999999875 4679999 99874     345655 35788899999997


Q ss_pred             CCCC-CceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEcC
Q psy2060         128 ALKQ-RNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRA  190 (193)
Q Consensus       128 ~~~~-~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s~  190 (193)
                      .... ...+.+.|+++|..++|++||..    +.|++.|.|.+|.  +++.|+.|+|+..+.+.
T Consensus      3699 lse~~n~~~kl~frLkT~~sngIiM~tr----~~d~~iLkLv~G~--~~l~~~cgsG~Givg~q 3756 (4289)
T KOG1219|consen 3699 LSENQNTRMKLGFRLKTLQSNGIIMYTR----KTDLAILKLVGGS--PQLLADCGSGPGIVGSQ 3756 (4289)
T ss_pred             cccccccceEEEEEEEecccCcEEEEEc----CCceEEEEecCCc--EEEEEecCCCCCccccc
Confidence            5544 22378999999999999999973    6799999999999  99999999998877765

>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []

Probab=98.95  E-value=3.8e-09  Score=76.34  Aligned_cols=50  Identities=46%  Similarity=0.743  Sum_probs=45.1

Q ss_pred             EEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEcCCCC
Q psy2060         141 FSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRADSI  193 (193)
Q Consensus       141 f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s~~~i  193 (193)
                      |||..++|+|||.++ ....||++|+|.+|+  |+|+|++|+++..+.+++.|
T Consensus         1 frT~~~~Gllly~g~-~~~~dfial~L~~G~--l~~~~~~G~~~~~~~~~~~i   50 (131)
T PF00054_consen    1 FRTSEPNGLLLYLGS-KDGKDFIALELRDGR--LEFRYNLGSGPASLRSPQKI   50 (131)
T ss_dssp             EEESSSSEEEEEEES-STTSSEEEEEEETTE--EEEEEESSSEEEEEEESSET
T ss_pred             CccCCCCceEEECCc-CCCCCEEEEEEECCE--EEEEEeCCCccceecCCCcc
Confidence            899999999999986 445599999999999  99999999999999988754

The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....

>KOG3516|consensus

Probab=98.94  E-value=2.2e-08  Score=92.04  Aligned_cols=108  Identities=25%  Similarity=0.432  Sum_probs=84.2

Q ss_pred             CCC-CCCCCCcEEeeCCCCceecccCCC-CCCccccccccceec-ccCCCcceEEecCCCC-------------------
Q psy2060          74 DCK-GVCSPGATCSLNPSGGYICDDCSL-AGSYEHYDRLCRLRA-RSFPKNSFLTFPALKQ-------------------  131 (193)
Q Consensus        74 ~C~-~pC~~gg~C~~~~~~~~~C~~C~~-g~~~~~~g~~C~~~~-~sF~g~syl~~~~~~~-------------------  131 (193)
                      .|. .+|.|||+|+... .+|.|. |.. .|.    |+.|.... .-|...+++.|....+                   
T Consensus       957 hCss~~C~NGG~Cvery-~gytCD-Cs~Tay~----Gp~Cs~eig~~fe~gs~i~y~fq~~~~~a~~~~~~~~~~~~~~~ 1030 (1306)
T KOG3516|consen  957 HCSSYPCLNGGHCVERY-DGYTCD-CSRTAYD----GPFCSKEIGVFFERGSSIRYNFQKPMRSAVFESSRVKQKLEIEI 1030 (1306)
T ss_pred             ccccccccCCCEEEEec-Cceeec-cccCcCC----CCccccccceEecCCceEEEeccchHHHhhhhhhhhhhcccccc
Confidence            788 9999999999998 999999 975 344    99998864 4466677777653221                   


Q ss_pred             CceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEec-CCeeEEEEEEeCCC-ceEEEEcCC
Q psy2060         132 RNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELT-DSGRSVQFSWSLGS-EVARLNRAD  191 (193)
Q Consensus       132 ~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~-~G~~~l~~~~~~g~-g~~~l~s~~  191 (193)
                      .....|.|.|+|....++|||.+  .-..||+++.|. +|.  |+++|.+|. .+.+++.++
T Consensus      1031 ~~~e~i~~sftTt~~ps~LLfvs--sF~~~y~~V~v~~nGs--Lq~ry~lg~~e~~~~~~~~ 1088 (1306)
T KOG3516|consen 1031 NPNEEINFSFTTTRAPSDLLFVS--SFTDDYLAVLVKDNGS--LQTRYMLGFREPFEYQFKD 1088 (1306)
T ss_pred             CccceEEEEEEeccCceEEEEee--ccccceEEEEEeCCCc--eEEEEecCCcCceEEeccc
Confidence            11236889999999999999987  456789999888 799  999999998 566665543

>KOG3514|consensus

Probab=98.87  E-value=1.6e-08  Score=91.84  Aligned_cols=109  Identities=25%  Similarity=0.418  Sum_probs=85.8

Q ss_pred             CcccccCCCCCCC-CCCCCCcEEeeCCCCceecccCCCCCCcccccccccee--cccCCCcceEEecCCCC--CceeEEE
Q psy2060          64 DTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR--ARSFPKNSFLTFPALKQ--RNRLHIK  138 (193)
Q Consensus        64 ~~C~~~~~~~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~--~~sF~g~syl~~~~~~~--~~~~~i~  138 (193)
                      +.|...-. ..|+ +||+|+|+|...+ +.|.|. |......   |+.|+..  +.+|+|..|+..-....  ....++.
T Consensus       616 psCs~~~~-~~C~~nPC~N~g~C~egw-NrfiCD-Cs~T~~~---G~~CerE~t~ls~nGs~~m~i~L~~~~~tq~E~v~  689 (1591)
T KOG3514|consen  616 PSCSLSNE-KICESNPCQNGGKCSEGW-NRFICD-CSGTGFE---GRTCEREATALSYNGSMSMKIVLPHTMHTQAEDVS  689 (1591)
T ss_pred             cccchhhc-cccCCCcccCCCCccccc-cccccc-cccCccc---CccccceeeeEEEcCeeeEEEEecccceeecceEE
Confidence            34554432 3899 9999999999988 999999 9753332   9999884  67899988876532222  2234799


Q ss_pred             EEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCC
Q psy2060         139 LQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG  181 (193)
Q Consensus       139 ~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g  181 (193)
                      ++|+|..+.||||-.+. .++.|-+.|+|.+|+  +++..++.
T Consensus       690 iRF~t~r~~Gll~~Tta-~~s~D~l~l~L~~g~--vkl~v~ls  729 (1591)
T KOG3514|consen  690 IRFRTQRAYGLLFATTA-RGSADTLRLELDAGQ--VKLFVNLS  729 (1591)
T ss_pred             EEEEecccceeEEEecc-CCCCceEEEEEecce--EEEEEecC
Confidence            99999999999998765 578899999999999  99988886

>KOG3514|consensus

Probab=98.87  E-value=1.9e-08  Score=91.46  Aligned_cols=104  Identities=26%  Similarity=0.536  Sum_probs=86.6

Q ss_pred             CCC--CCCCCCcEEeeCCCCceecccCCCCCCcccccccccee----cccCCCcceEEecCCCC---CceeEEEEEEEeC
Q psy2060          74 DCK--GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR----ARSFPKNSFLTFPALKQ---RNRLHIKLQFSTL  144 (193)
Q Consensus        74 ~C~--~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~----~~sF~g~syl~~~~~~~---~~~~~i~~~f~T~  144 (193)
                      .|.  .+|.+++.|.... .+..|. |...+.    |+.|++.    ...|.|+-|+-|....+   ...-.|+|.|||.
T Consensus       211 ~~~~~~~c~~~g~c~s~d-~gp~c~-c~~~~d----gq~cekeK~~~eaTF~G~ef~~YDls~npI~s~~d~itl~FrT~  284 (1591)
T KOG3514|consen  211 SSREQFVCLNDGECYSSD-DGPHCD-CQFDHD----GQNCEKEKNDGEATFGGDEFVGYDLSQNPIRSKKDNITLTFRTV  284 (1591)
T ss_pred             cccccceeccCCeEecCC-CCCccc-cccccC----ccccccccCcceEEecCceEEEeeccCCcccccccceEEEEEEe
Confidence            555  8999999999887 888899 977444    9999984    56899999998864433   3335799999999


Q ss_pred             CCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEE
Q psy2060         145 HDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLN  188 (193)
Q Consensus       145 ~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~  188 (193)
                      +.+|+|||.|   +..||+.|.|.+|.  |.+..++++|..++.
T Consensus       285 q~ngllfytG---~~~dYlnlaL~dGa--V~l~~~l~~g~~e~~  323 (1591)
T KOG3514|consen  285 QGNGLLFYTG---DEKDYLNLALQDGA--VSLSSKLDGGDAEII  323 (1591)
T ss_pred             cCceeEEEcc---CCcceeeEeecCCc--EEEEEecCCccceeE
Confidence            9999999995   57899999999999  999999998877654

>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans

Probab=98.83  E-value=4.6e-08  Score=71.53  Aligned_cols=73  Identities=38%  Similarity=0.643  Sum_probs=62.3

Q ss_pred             ccCCCcceEEecCCCC-CceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEcCC
Q psy2060         116 RSFPKNSFLTFPALKQ-RNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRAD  191 (193)
Q Consensus       116 ~sF~g~syl~~~~~~~-~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s~~  191 (193)
                      ..|.+.+|+.++.... ....+|+++|+|..++|+||+.+. ....+|++|+|.+|+  |.+.++.|.....++++.
T Consensus         2 ~~F~g~~~i~~~~~~~~~~~~~i~~~frt~~~~g~l~~~~~-~~~~~~~~l~l~~g~--l~~~~~~g~~~~~~~~~~   75 (151)
T cd00110           2 VSFSGSSYVRLPTLPAPRTRLSISFSFRTTSPNGLLLYAGS-QNGGDFLALELEDGR--LVLRYDLGSGSLVLSSKT   75 (151)
T ss_pred             eEeCCCceEEecCCCCCcceeEEEEEEEeCCCCeEEEEecC-CCCCCEEEEEEECCE--EEEEEcCCcccEEEEccC
Confidence            4688899999987665 667899999999999999999864 225899999999999  999999997788887764

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.

>KOG3516|consensus

Probab=98.76  E-value=1.7e-07  Score=86.27  Aligned_cols=128  Identities=22%  Similarity=0.191  Sum_probs=95.7

Q ss_pred             cCCCCceeeCCCCCCCCcccccCCCCCCC-CCCCCCcEEeeCCCCceecccCCCCCCcccccccccee-----cccCC-C
Q psy2060          48 RTLDLLHDMGARYHWGDTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR-----ARSFP-K  120 (193)
Q Consensus        48 ~~~~~~~C~C~~g~~G~~C~~~~~~~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~-----~~sF~-g  120 (193)
                      ..+..+.|.|.++..-=.|.     .-|. .-++.+.+|+... ..-++. |...+...  +-+|+..     +++|+ +
T Consensus       726 C~d~~~~CNCDa~~~ewt~D-----tg~l~~k~hLPVt~vv~g-dTg~~~-sea~~~lg--PLrC~gDr~~wnsvSF~~~  796 (1306)
T KOG3516|consen  726 CLDPQLYCNCDADEKEWTTD-----TGCLAYKDHLPVTQVVIG-DTGRSQ-SEAPYVLG--PLRCEGDRNFWNSVSFHTG  796 (1306)
T ss_pred             ccCcceeeeccCCCcccccc-----ccccchhhcCCeeEEEEc-cCCCcc-cccceeec--ceEeecccccccceEeecC
Confidence            34567899998775432222     1444 6677888888665 333366 65544432  6678763     56787 4


Q ss_pred             cceEEecCCCCCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEE
Q psy2060         121 NSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLN  188 (193)
Q Consensus       121 ~syl~~~~~~~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~  188 (193)
                      .+|+.++.....++..|+|.|||..+.|++|.+.   +..|||.|+|.... ++.|.|+.|+|+.+++
T Consensus       797 ~syL~fp~f~~~~saDIsf~FrTt~~~gvflen~---g~~dfir~eL~~~~-~vtf~~dvgnGp~~~~  860 (1306)
T KOG3516|consen  797 ASYLHFPPFHNELSADISFFFRTTASSGVFLENH---GINDFIRLELSSPV-EVTFAFDVGNGPSQLT  860 (1306)
T ss_pred             cceeecCcccCcccccEEEEEEecCCceEeeecc---CCCceEEEEEcCCC-ceEEEEEcCCCceeEE
Confidence            7899999999999999999999999999999983   47899999999765 5999999999977664

>smart00282 LamG Laminin G domain

Probab=98.41  E-value=2e-06  Score=61.94  Aligned_cols=53  Identities=42%  Similarity=0.682  Sum_probs=46.4

Q ss_pred             eEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEcC
Q psy2060         135 LHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRA  190 (193)
Q Consensus       135 ~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s~  190 (193)
                      .+|+|.|+|..++|+|||.+. ....+|++|+|.+|+  +.+.++.|+++..++++
T Consensus         3 ~~i~~~frt~~~~g~l~~~~~-~~~~~~l~l~l~~g~--l~~~~~~g~~~~~~~~~   55 (135)
T smart00282        3 LSISFSFRTTSPNGLLLYAGS-KNGGDYLALELRDGR--LVLRYDLGSGPARLTSD   55 (135)
T ss_pred             eEEEEEEEeCCCCEEEEEeCC-CCCCCEEEEEEECCE--EEEEEECCCCCEEEEEC
Confidence            579999999999999999853 246799999999999  99999999888887765

>KOG1225|consensus

Probab=98.21  E-value=1.6e-06  Score=75.35  Aligned_cols=70  Identities=20%  Similarity=0.270  Sum_probs=54.3

Q ss_pred             ee-cCCCCccCCCCcce--eec---CC-ccCCCCceeeCCCCCCCCcccccCCCCCCCCCCCCCcEEeeCCCCceecccC
Q psy2060          26 LS-GLPDNEGLEKRVQT--FVD---GG-HRTLDLLHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDC   98 (193)
Q Consensus        26 ~c-C~~g~~g~~~~c~~--~~~---gg-~~~~~~~~C~C~~g~~G~~C~~~~~~~~C~~pC~~gg~C~~~~~~~~~C~~C   98 (193)
                      .| |+|||+|..  |+.  +..   ++ ....+  .|+|++||.|..|+..    .|...|.+.|.|++ .    +|. |
T Consensus       266 ~CIC~~Gf~G~d--C~e~~Cp~~cs~~g~~~~g--~CiC~~g~~G~dCs~~----~cpadC~g~G~Ci~-G----~C~-C  331 (525)
T KOG1225|consen  266 RCICPPGFTGDD--CDELVCPVDCSGGGVCVDG--ECICNPGYSGKDCSIR----RCPADCSGHGKCID-G----ECL-C  331 (525)
T ss_pred             eEeCCCCCcCCC--CCcccCCcccCCCceecCC--EeecCCCccccccccc----cCCccCCCCCcccC-C----ceE-e
Confidence            48 999999998  876  211   33 44444  9999999999999865    67788999999983 3    588 8


Q ss_pred             CCCCCccccccccce
Q psy2060          99 SLAGSYEHYDRLCRL  113 (193)
Q Consensus        99 ~~g~~~~~~g~~C~~  113 (193)
                      .+||+    |..|++
T Consensus       332 ~~Gy~----G~~C~~  342 (525)
T KOG1225|consen  332 DEGYT----GELCIQ  342 (525)
T ss_pred             CCCCc----CCcccc
Confidence            89998    666665

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=98.06  E-value=1.8e-06  Score=46.79  Aligned_cols=28  Identities=39%  Similarity=0.993  Sum_probs=25.1

Q ss_pred             CC-CCCCCCcEEeeCCCCceecccCCCCCC
Q psy2060          75 CK-GVCSPGATCSLNPSGGYICDDCSLAGS  103 (193)
Q Consensus        75 C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~  103 (193)
                      |. +||.|+|+|++...++|.|. |+++|.
T Consensus         1 C~~~~C~n~g~C~~~~~~~y~C~-C~~G~~   29 (32)
T PF00008_consen    1 CSSNPCQNGGTCIDLPGGGYTCE-CPPGYT   29 (32)
T ss_dssp             TTTTSSTTTEEEEEESTSEEEEE-EBTTEE
T ss_pred             CCCCcCCCCeEEEeCCCCCEEeE-CCCCCc
Confidence            55 89999999998766999999 999987

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []

Probab=98.03  E-value=3.5e-05  Score=54.30  Aligned_cols=48  Identities=38%  Similarity=0.605  Sum_probs=38.7

Q ss_pred             EEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCC-CceEEEEcCC
Q psy2060         141 FSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG-SEVARLNRAD  191 (193)
Q Consensus       141 f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g-~g~~~l~s~~  191 (193)
                      |||..++|+|||.+... ..+|++|+|.+|+  |++.|++| .....+.++.
T Consensus         1 Frt~~~~g~Ll~~~~~~-~~~~l~l~l~~g~--l~~~~~~g~~~~~~~~~~~   49 (128)
T PF02210_consen    1 FRTRSPNGLLLYIGSED-NGDFLSLELVDGR--LVVRYNLGGSEIVTTFSNS   49 (128)
T ss_dssp             EEESSSSEEEEEEEEST-TSEEEEEEEETTE--EEEEEESSSSEEEEEECSS
T ss_pred             CccCCCCEeEEEEcCCC-CCEEEEEEEECCE--EEEEEEccccceeeeccCc
Confidence            89999999999997522 2689999999999  99999999 4455555444

The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=97.64  E-value=3.5e-05  Score=44.36  Aligned_cols=28  Identities=29%  Similarity=0.759  Sum_probs=25.8

Q ss_pred             CCC---CCCCCCcEEeeCCCCceecccCCCCCC
Q psy2060          74 DCK---GVCSPGATCSLNPSGGYICDDCSLAGS  103 (193)
Q Consensus        74 ~C~---~pC~~gg~C~~~~~~~~~C~~C~~g~~  103 (193)
                      +|.   +.|..++.|++.. ++|.|. |++||.
T Consensus         4 EC~~~~~~C~~~~~C~N~~-Gsy~C~-C~~Gy~   34 (42)
T PF07645_consen    4 ECAEGPHNCPENGTCVNTE-GSYSCS-CPPGYE   34 (42)
T ss_dssp             TTTTTSSSSSTTSEEEEET-TEEEEE-ESTTEE
T ss_pred             ccCCCCCcCCCCCEEEcCC-CCEEee-CCCCcE
Confidence            888   6899899999998 999999 999986

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>KOG1214|consensus

Probab=97.55  E-value=8.2e-05  Score=67.15  Aligned_cols=55  Identities=25%  Similarity=0.496  Sum_probs=46.1

Q ss_pred             CCCceeeCCCCCCCC--cccccCCCCCCC-CCCCCCcEEeeCCCCceecccCCCCCCcccccccc
Q psy2060          50 LDLLHDMGARYHWGD--TCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLC  111 (193)
Q Consensus        50 ~~~~~C~C~~g~~G~--~C~~~~~~~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C  111 (193)
                      .+.|.|.|.|||.|+  .|... +  +|. +.|...++|.+.+ ++|.|. |.+||.++  |..|
T Consensus       806 gs~y~C~CLPGfsGDG~~c~dv-D--eC~psrChp~A~Cyntp-gsfsC~-C~pGy~GD--Gf~C  863 (1289)
T KOG1214|consen  806 GSTYSCACLPGFSGDGHQCTDV-D--ECSPSRCHPAATCYNTP-GSFSCR-CQPGYYGD--GFQC  863 (1289)
T ss_pred             CceEEEeecCCccCCccccccc-c--ccCccccCCCceEecCC-Ccceee-cccCccCC--Ccee
Confidence            457999999999964  56543 3  999 9999999999999 999999 99999865  5555

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=97.41  E-value=4.5e-05  Score=32.62  Aligned_cols=13  Identities=15%  Similarity=0.067  Sum_probs=8.9

Q ss_pred             eeeCCCCCCCCcc
Q psy2060          54 HDMGARYHWGDTC   66 (193)
Q Consensus        54 ~C~C~~g~~G~~C   66 (193)
                      .|.|++||+|.+|
T Consensus         1 ~C~C~~G~~G~~C   13 (13)
T PF12661_consen    1 TCQCPPGWTGPNC   13 (13)
T ss_dssp             EEEE-TTEETTTT
T ss_pred             CccCcCCCcCCCC
Confidence            4778888887776

>KOG1217|consensus

Probab=97.36  E-value=0.00037  Score=59.73  Aligned_cols=57  Identities=32%  Similarity=0.605  Sum_probs=45.8

Q ss_pred             ccCCCCceeeCCCCCCCCcc--cccCCCCCCC-C-CCCCCcEEeeCCCCceecccCCCCCCcccccccc
Q psy2060          47 HRTLDLLHDMGARYHWGDTC--ETDITKSDCK-G-VCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLC  111 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~G~~C--~~~~~~~~C~-~-pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C  111 (193)
                      .+..++|.|.|++||++..+  ...+  +.|. . +|.++++|++.. +.|.|. |+++|.    |..|
T Consensus       246 ~~~~~~~~C~~~~g~~~~~~~~~~~~--~~C~~~~~c~~~~~C~~~~-~~~~C~-C~~g~~----g~~~  306 (487)
T KOG1217|consen  246 VNTVGSYTCRCPEGYTGDACVTCVDV--DSCALIASCPNGGTCVNVP-GSYRCT-CPPGFT----GRLC  306 (487)
T ss_pred             cccCCceeeeCCCCccccccceeeec--cccCCCCccCCCCeeecCC-Ccceee-CCCCCC----CCCC
Confidence            45566799999999999874  3333  3898 5 499999999887 779999 999998    6665

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.29  E-value=0.00037  Score=38.79  Aligned_cols=33  Identities=33%  Similarity=0.900  Sum_probs=27.4

Q ss_pred             CCC--CCCCCCcEEeeCCCCceecccCCCCCCcccccccc
Q psy2060          74 DCK--GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLC  111 (193)
Q Consensus        74 ~C~--~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C  111 (193)
                      +|.  .+|.+++.|++.. ++|.|. |+.+|. .  |..|
T Consensus         4 ~C~~~~~C~~~~~C~~~~-g~~~C~-C~~g~~-~--g~~C   38 (39)
T smart00179        4 ECASGNPCQNGGTCVNTV-GSYRCE-CPPGYT-D--GRNC   38 (39)
T ss_pred             cCcCCCCcCCCCEeECCC-CCeEeE-CCCCCc-c--CCcC
Confidence            777  5899999999987 999999 999886 1  5555

>KOG1225|consensus

Probab=97.28  E-value=0.00041  Score=60.68  Aligned_cols=72  Identities=24%  Similarity=0.307  Sum_probs=52.7

Q ss_pred             ee-cCCCCccCCCCcceeec-CC-cc--CCCCceeeCCCCCCCCcccccCCCCCCCCCCCCCcEEeeCCCCceecccCCC
Q psy2060          26 LS-GLPDNEGLEKRVQTFVD-GG-HR--TLDLLHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSL  100 (193)
Q Consensus        26 ~c-C~~g~~g~~~~c~~~~~-gg-~~--~~~~~~C~C~~g~~G~~C~~~~~~~~C~~pC~~gg~C~~~~~~~~~C~~C~~  100 (193)
                      .| |+-+|+|..  |..-.- ++ .+  .-..-+|+|++||+|..|...    .|...|..++.|++    + .|. |++
T Consensus       235 ic~c~~~~~g~~--c~~~~C~~~c~~~g~c~~G~CIC~~Gf~G~dC~e~----~Cp~~cs~~g~~~~----g-~Ci-C~~  302 (525)
T KOG1225|consen  235 ICECPEGYFGPL--CSTIYCPGGCTGRGQCVEGRCICPPGFTGDDCDEL----VCPVDCSGGGVCVD----G-ECI-CNP  302 (525)
T ss_pred             eeecCCceeCCc--cccccCCCCCcccceEeCCeEeCCCCCcCCCCCcc----cCCcccCCCceecC----C-Eee-cCC
Confidence            47 999999997  763221 11 11  112358999999999999875    78844998888873    3 799 999


Q ss_pred             CCCccccccccce
Q psy2060         101 AGSYEHYDRLCRL  113 (193)
Q Consensus       101 g~~~~~~g~~C~~  113 (193)
                      +|.    |+.|+.
T Consensus       303 g~~----G~dCs~  311 (525)
T KOG1225|consen  303 GYS----GKDCSI  311 (525)
T ss_pred             Ccc----cccccc
Confidence            999    888864

>KOG4260|consensus

Probab=97.26  E-value=0.0003  Score=56.04  Aligned_cols=75  Identities=12%  Similarity=0.130  Sum_probs=56.3

Q ss_pred             eecCCCCccCCCCcceeec------CC-------ccCCCCceeeCCCCCCCCccccc-----------------------
Q psy2060          26 LSGLPDNEGLEKRVQTFVD------GG-------HRTLDLLHDMGARYHWGDTCETD-----------------------   69 (193)
Q Consensus        26 ~cC~~g~~g~~~~c~~~~~------gg-------~~~~~~~~C~C~~g~~G~~C~~~-----------------------   69 (193)
                      +|||+|-.|+.  |..+..      +|       ..-.++-.|.|.+||+|+.|..-                       
T Consensus       130 vCCp~gtyGpd--Cl~Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C  207 (350)
T KOG4260|consen  130 VCCPDGTYGPD--CLQCPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGC  207 (350)
T ss_pred             eccCCCCcCCc--cccCCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhhh
Confidence            47999999998  887743      11       22345678999999999888431                       


Q ss_pred             --------------------------CCCCCCC---CCCCCCcEEeeCCCCceecccCCCCCCc
Q psy2060          70 --------------------------ITKSDCK---GVCSPGATCSLNPSGGYICDDCSLAGSY  104 (193)
Q Consensus        70 --------------------------~~~~~C~---~pC~~gg~C~~~~~~~~~C~~C~~g~~~  104 (193)
                                                +|.++|.   .||...-.|++.. ++|+|. +.+||..
T Consensus       208 ~~~Csg~~~k~C~kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNte-GSf~C~-dk~Gy~~  269 (350)
T KOG4260|consen  208 LGVCSGESSKGCSKCKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTE-GSFKCE-DKEGYKK  269 (350)
T ss_pred             hcccCCCCCCChhhhcccceecccccccHHHHhcCCCCCChhheeecCC-CceEec-ccccccC
Confidence                                      1124665   7899989999997 999999 9888874

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.19  E-value=0.00047  Score=37.88  Aligned_cols=33  Identities=33%  Similarity=0.855  Sum_probs=28.1

Q ss_pred             CCC--CCCCCCcEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          74 DCK--GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        74 ~C~--~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      +|.  .+|.+++.|++.. ++|.|. |+.+|.    |..|+
T Consensus         4 ~C~~~~~C~~~~~C~~~~-~~~~C~-C~~g~~----g~~C~   38 (38)
T cd00054           4 ECASGNPCQNGGTCVNTV-GSYRCS-CPPGYT----GRNCE   38 (38)
T ss_pred             cCCCCCCcCCCCEeECCC-CCeEeE-CCCCCc----CCcCC
Confidence            676  5899999999887 899999 999988    77774

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>KOG1217|consensus

Probab=97.13  E-value=0.00097  Score=57.13  Aligned_cols=83  Identities=24%  Similarity=0.507  Sum_probs=63.9

Q ss_pred             CCCCcee-cCCCCccCCCCcce---eec-------CC--cc---CCCCceeeCCCCCCCCcccccCCCCCCC---CCCCC
Q psy2060          21 PFQPYLS-GLPDNEGLEKRVQT---FVD-------GG--HR---TLDLLHDMGARYHWGDTCETDITKSDCK---GVCSP   81 (193)
Q Consensus        21 ~~~~~~c-C~~g~~g~~~~c~~---~~~-------gg--~~---~~~~~~C~C~~g~~G~~C~~~~~~~~C~---~pC~~   81 (193)
                      ....+.| |++||.|..  |+.   +..       .+  .+   ....+.|.|..||.+..|+...+  .|.   .+|.+
T Consensus       106 ~~~~~~c~c~~g~~~~~--~~~~~~C~~~~~~~~~~~~c~~~~~~~~~~~c~C~~g~~~~~~~~~~~--~C~~~~~~c~~  181 (487)
T KOG1217|consen  106 CVGSYECTCPPGYQGTP--CEGECECVTGPGVCCIDGSCSNGPGSVGPFRCSCTEGYEGEPCETDLD--ECIQYSSPCQN  181 (487)
T ss_pred             CCCCceeeCCCccccCc--CCcceeecCCCCCeeCchhhcCCCCCCCceeeeeCCCccccccccccc--ccccCCCCcCC
Confidence            4456778 999999986  555   222       12  22   34589999999999999987644  887   57999


Q ss_pred             CcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          82 GATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        82 gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      ++.|.+.. ++|.|. |+.++.    +..|+.
T Consensus       182 ~~~C~~~~-~~~~C~-c~~~~~----~~~~~~  207 (487)
T KOG1217|consen  182 GGTCVNTG-GSYLCS-CPPGYT----GSTCET  207 (487)
T ss_pred             CcccccCC-CCeeEe-CCCCcc----CCcCcC
Confidence            99999987 789999 999998    666654

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=96.96  E-value=0.0012  Score=35.68  Aligned_cols=25  Identities=40%  Similarity=0.869  Sum_probs=22.7

Q ss_pred             CCCCCCcEEeeCCCCceecccCCCCCC
Q psy2060          77 GVCSPGATCSLNPSGGYICDDCSLAGS  103 (193)
Q Consensus        77 ~pC~~gg~C~~~~~~~~~C~~C~~g~~  103 (193)
                      .+|.+++.|++.. ++|.|. |+.+|.
T Consensus         6 ~~C~~~~~C~~~~-~~~~C~-C~~g~~   30 (36)
T cd00053           6 NPCSNGGTCVNTP-GSYRCV-CPPGYT   30 (36)
T ss_pred             CCCCCCCEEecCC-CCeEeE-CCCCCc
Confidence            6788899999988 899999 999998

>smart00181 EGF Epidermal growth factor-like domain

Probab=96.79  E-value=0.0018  Score=35.14  Aligned_cols=29  Identities=41%  Similarity=1.008  Sum_probs=24.2

Q ss_pred             CCCCCCcEEeeCCCCceecccCCCCCCccccc-cccc
Q psy2060          77 GVCSPGATCSLNPSGGYICDDCSLAGSYEHYD-RLCR  112 (193)
Q Consensus        77 ~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g-~~C~  112 (193)
                      .+|.++ +|++.. ++|.|. |+.+|.    | ..|+
T Consensus         6 ~~C~~~-~C~~~~-~~~~C~-C~~g~~----g~~~C~   35 (35)
T smart00181        6 GPCSNG-TCINTP-GSYTCS-CPPGYT----GDKRCE   35 (35)
T ss_pred             CCCCCC-EEECCC-CCeEeE-CCCCCc----cCCccC
Confidence            378888 999886 999999 999998    6 6653

>KOG1214|consensus

Probab=96.72  E-value=0.0026  Score=57.90  Aligned_cols=77  Identities=18%  Similarity=0.311  Sum_probs=59.8

Q ss_pred             cCCCCCCcee-cCCCCccCCCCcceeecCCccCCCCceeeCCCCCC--CCcccccCCCCCCC---CCCCCCcEEeeCCCC
Q psy2060          18 TNGPFQPYLS-GLPDNEGLEKRVQTFVDGGHRTLDLLHDMGARYHW--GDTCETDITKSDCK---GVCSPGATCSLNPSG   91 (193)
Q Consensus        18 ~~~~~~~~~c-C~~g~~g~~~~c~~~~~gg~~~~~~~~C~C~~g~~--G~~C~~~~~~~~C~---~pC~~gg~C~~~~~~   91 (193)
                      .+.|...+.| |..++++..++|..      .+...|.|.|..||.  |.+|-..   ++|.   ..|.....|++.+ +
T Consensus       686 ~S~~~~~npCy~gsh~cdt~a~C~p------g~~~~~tcecs~g~~gdgr~c~d~---~eca~~~~~CGp~s~Cin~p-g  755 (1289)
T KOG1214|consen  686 DSDPTPVNPCYDGSHMCDTTARCHP------GTGVDYTCECSSGYQGDGRNCVDE---NECATGFHRCGPNSVCINLP-G  755 (1289)
T ss_pred             CCCCcccccceecCcccCCCccccC------CCCcceEEEEeeccCCCCCCCCCh---hhhccCCCCCCCCceeecCC-C
Confidence            4455666678 88888888777752      334579999999998  5678643   3887   8899999999999 9


Q ss_pred             ceecccCCCCCCcc
Q psy2060          92 GYICDDCSLAGSYE  105 (193)
Q Consensus        92 ~~~C~~C~~g~~~~  105 (193)
                      +|+|+ |..+|...
T Consensus       756 ~~rce-C~~gy~F~  768 (1289)
T KOG1214|consen  756 SYRCE-CRSGYEFA  768 (1289)
T ss_pred             ceeEE-Eeecceec
Confidence            99999 98776544

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=96.28  E-value=0.0019  Score=35.74  Aligned_cols=31  Identities=35%  Similarity=0.830  Sum_probs=22.9

Q ss_pred             CCCCCCcEEeeCCCCceecccCCCCCCcccccccc
Q psy2060          77 GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLC  111 (193)
Q Consensus        77 ~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C  111 (193)
                      ..|...++|++.. ++|.|. |++||.++  |..|
T Consensus         6 ~~C~~nA~C~~~~-~~~~C~-C~~Gy~Gd--G~~C   36 (36)
T PF12947_consen    6 GGCHPNATCTNTG-GSYTCT-CKPGYEGD--GFFC   36 (36)
T ss_dssp             GGS-TTCEEEE-T-TSEEEE-E-CEEECC--STCE
T ss_pred             CCCCCCcEeecCC-CCEEeE-CCCCCccC--CcCC
Confidence            5688889999998 899999 99998854  5544

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=96.17  E-value=0.00094  Score=35.97  Aligned_cols=23  Identities=13%  Similarity=-0.104  Sum_probs=16.7

Q ss_pred             ecCC--ccCC-CCceeeCCCCCCCCc
Q psy2060          43 VDGG--HRTL-DLLHDMGARYHWGDT   65 (193)
Q Consensus        43 ~~gg--~~~~-~~~~C~C~~g~~G~~   65 (193)
                      .|+|  .+.. ++|.|.|++||+|.+
T Consensus         7 ~n~g~C~~~~~~~y~C~C~~G~~G~~   32 (32)
T PF00008_consen    7 QNGGTCIDLPGGGYTCECPPGYTGKR   32 (32)
T ss_dssp             TTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred             CCCeEEEeCCCCCEEeECCCCCccCC
Confidence            3455  3444 889999999999864

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=95.83  E-value=0.0054  Score=33.95  Aligned_cols=26  Identities=31%  Similarity=0.746  Sum_probs=19.7

Q ss_pred             EEeeCCCCceecccCCCCCCcccccccc
Q psy2060          84 TCSLNPSGGYICDDCSLAGSYEHYDRLC  111 (193)
Q Consensus        84 ~C~~~~~~~~~C~~C~~g~~~~~~g~~C  111 (193)
                      .|++.+ ++|+|. ||.||....+++.|
T Consensus        11 ~C~~~~-g~~~C~-C~~Gy~L~~D~~tC   36 (36)
T PF14670_consen   11 ICVNTP-GSYRCS-CPPGYKLAEDGRTC   36 (36)
T ss_dssp             EEEEET-TSEEEE--STTEEE-TTSSSE
T ss_pred             CCccCC-CceEeE-CCCCCEECcCCCCC
Confidence            789998 999999 99999876555544

...

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=95.77  E-value=0.0082  Score=33.13  Aligned_cols=21  Identities=19%  Similarity=0.091  Sum_probs=18.3

Q ss_pred             ccCCCCceeeCCCCCC-CCccc
Q psy2060          47 HRTLDLLHDMGARYHW-GDTCE   67 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~-G~~C~   67 (193)
                      .+..++|.|.|++||. |..|+
T Consensus        18 ~~~~g~~~C~C~~g~~~g~~C~   39 (39)
T smart00179       18 VNTVGSYRCECPPGYTDGRNCE   39 (39)
T ss_pred             ECCCCCeEeECCCCCccCCcCC
Confidence            5778899999999999 88874

>KOG1836|consensus

Probab=95.71  E-value=0.016  Score=57.33  Aligned_cols=84  Identities=17%  Similarity=0.309  Sum_probs=58.8

Q ss_pred             e-cCCCCccCCCCcceeec--------------------CC---ccCCCCceeeCCCCCCCCcccccCC----------C
Q psy2060          27 S-GLPDNEGLEKRVQTFVD--------------------GG---HRTLDLLHDMGARYHWGDTCETDIT----------K   72 (193)
Q Consensus        27 c-C~~g~~g~~~~c~~~~~--------------------gg---~~~~~~~~C~C~~g~~G~~C~~~~~----------~   72 (193)
                      | |++||+|.+  |+.+-+                    .|   .-...+-.|.|.+.--|+.|+...+          .
T Consensus       697 c~C~~g~tG~~--Ce~C~~gfrr~~~~~~~~~~c~~C~cngh~~~Cd~~tG~C~C~~~t~G~~C~~C~~GfYg~~~~~~~  774 (1705)
T KOG1836|consen  697 CTCPVGYTGQF--CESCAPGFRRLSPQLGPFCPCIPCDCNGHSNICDPRTGQCKCKHNTFGGQCAQCVDGFYGLPDLGTS  774 (1705)
T ss_pred             ccCCCCcccch--hhhcchhhhcccccCCCCCcccccccCCccccccCCCCceecccCCCCCchhhhcCCCCCccccCCC
Confidence            8 999999998  986654                    11   1112345566666666666665322          1


Q ss_pred             CCCC-CCCCCCcEEeeCC-CCceecccCCCCCCccccccccceecc
Q psy2060          73 SDCK-GVCSPGATCSLNP-SGGYICDDCSLAGSYEHYDRLCRLRAR  116 (193)
Q Consensus        73 ~~C~-~pC~~gg~C~~~~-~~~~~C~~C~~g~~~~~~g~~C~~~~~  116 (193)
                      ..|. -+|.+++.|.... .....|..||++|+    |.+|+.-..
T Consensus       775 ~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gyt----G~rCe~c~d  816 (1705)
T KOG1836|consen  775 GDCQPCPCPNGGACGQTPEILEVVCKNCPPGYT----GLRCEECAD  816 (1705)
T ss_pred             CCCccCCCCCChhhcCcCcccceecCCCCCCCc----ccccccCCC
Confidence            2388 8999999998765 47778989999999    999988543

>smart00051 DSL delta serrate ligand

Probab=95.63  E-value=0.014  Score=36.52  Aligned_cols=37  Identities=11%  Similarity=-0.013  Sum_probs=23.7

Q ss_pred             cCCCCccCCCCcceeecCCccCCCC------ceeeCCCCCCCCcc
Q psy2060          28 GLPDNEGLEKRVQTFVDGGHRTLDL------LHDMGARYHWGDTC   66 (193)
Q Consensus        28 C~~g~~g~~~~c~~~~~gg~~~~~~------~~C~C~~g~~G~~C   66 (193)
                      |.++|.|..  |+..-....+..+.      -.|.|++||+|+.|
T Consensus        21 C~~~~yG~~--C~~~C~~~~d~~~~~~Cd~~G~~~C~~Gw~G~~C   63 (63)
T smart00051       21 CDENYYGEG--CNKFCRPRDDFFGHYTCDENGNKGCLEGWMGPYC   63 (63)
T ss_pred             CCCCCcCCc--cCCEeCcCccccCCccCCcCCCEecCCCCcCCCC
Confidence            899999997  76432211112223      34669999999887

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=95.57  E-value=0.009  Score=29.90  Aligned_cols=16  Identities=19%  Similarity=0.094  Sum_probs=12.4

Q ss_pred             CceeeCCCCCC----CCccc
Q psy2060          52 LLHDMGARYHW----GDTCE   67 (193)
Q Consensus        52 ~~~C~C~~g~~----G~~C~   67 (193)
                      +|+|.|++||.    |..|+
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~   20 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCE   20 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccc
Confidence            58999999997    45554

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=95.13  E-value=0.018  Score=31.30  Aligned_cols=21  Identities=19%  Similarity=0.101  Sum_probs=17.9

Q ss_pred             ccCCCCceeeCCCCCCCCccc
Q psy2060          47 HRTLDLLHDMGARYHWGDTCE   67 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~G~~C~   67 (193)
                      .+..++|.|.|++||.|..|+
T Consensus        18 ~~~~~~~~C~C~~g~~g~~C~   38 (38)
T cd00054          18 VNTVGSYRCSCPPGYTGRNCE   38 (38)
T ss_pred             ECCCCCeEeECCCCCcCCcCC
Confidence            567788999999999998774

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=95.11  E-value=0.015  Score=29.11  Aligned_cols=21  Identities=24%  Similarity=0.521  Sum_probs=17.4

Q ss_pred             ceecccCCCCCCccccccccce
Q psy2060          92 GYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        92 ~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      +|+|. |++||.....|..|+.
T Consensus         1 sy~C~-C~~Gy~l~~d~~~C~D   21 (24)
T PF12662_consen    1 SYTCS-CPPGYQLSPDGRSCED   21 (24)
T ss_pred             CEEee-CCCCCcCCCCCCcccc
Confidence            58999 9999987667888864

>smart00181 EGF Epidermal growth factor-like domain

Probab=95.07  E-value=0.019  Score=30.95  Aligned_cols=20  Identities=20%  Similarity=0.057  Sum_probs=16.3

Q ss_pred             cCCCCceeeCCCCCCC-Cccc
Q psy2060          48 RTLDLLHDMGARYHWG-DTCE   67 (193)
Q Consensus        48 ~~~~~~~C~C~~g~~G-~~C~   67 (193)
                      +..++|.|.|++||.| ..|+
T Consensus        15 ~~~~~~~C~C~~g~~g~~~C~   35 (35)
T smart00181       15 NTPGSYTCSCPPGYTGDKRCE   35 (35)
T ss_pred             CCCCCeEeECCCCCccCCccC
Confidence            5578899999999998 6663

>KOG1226|consensus

Probab=94.98  E-value=0.037  Score=50.18  Aligned_cols=51  Identities=22%  Similarity=0.496  Sum_probs=36.8

Q ss_pred             ceeeCCCCCCCCcccccCCCCCCC----CCCCCCcEEeeCCCCceecccCCCC-CCccccccccce
Q psy2060          53 LHDMGARYHWGDTCETDITKSDCK----GVCSPGATCSLNPSGGYICDDCSLA-GSYEHYDRLCRL  113 (193)
Q Consensus        53 ~~C~C~~g~~G~~C~~~~~~~~C~----~pC~~gg~C~~~~~~~~~C~~C~~g-~~~~~~g~~C~~  113 (193)
                      -+|+|.+||+|..|+.+.+.+.|.    ..|...|+|+=.     +|. |..+ |.    |+.||.
T Consensus       566 G~CvC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~Cg-----~C~-C~~~~~s----G~~CE~  621 (783)
T KOG1226|consen  566 GRCVCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCECG-----RCK-CTDPPYS----GEFCEK  621 (783)
T ss_pred             CcEEcCCCCccCCCCCCCCCccccCCCCceeCCCceeeCC-----ceE-cCCCCcC----cchhhc
Confidence            478999999999998877667887    578887877632     355 5444 44    666665

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=94.90  E-value=0.0096  Score=32.93  Aligned_cols=16  Identities=6%  Similarity=-0.408  Sum_probs=13.1

Q ss_pred             ccCCCCceeeCCCCCC
Q psy2060          47 HRTLDLLHDMGARYHW   62 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~   62 (193)
                      .+++++|+|.|++||.
T Consensus        13 ~~~~g~~~C~C~~Gy~   28 (36)
T PF14670_consen   13 VNTPGSYRCSCPPGYK   28 (36)
T ss_dssp             EEETTSEEEE-STTEE
T ss_pred             ccCCCceEeECCCCCE
Confidence            5778899999999996

...

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=94.14  E-value=0.044  Score=29.14  Aligned_cols=20  Identities=20%  Similarity=0.127  Sum_probs=16.5

Q ss_pred             ccCCCCceeeCCCCCCCC-cc
Q psy2060          47 HRTLDLLHDMGARYHWGD-TC   66 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~G~-~C   66 (193)
                      .+..++|.|.|++||.|. .|
T Consensus        15 ~~~~~~~~C~C~~g~~g~~~C   35 (36)
T cd00053          15 VNTPGSYRCVCPPGYTGDRSC   35 (36)
T ss_pred             ecCCCCeEeECCCCCcccCCc
Confidence            466678999999999988 55

>KOG0994|consensus

Probab=94.10  E-value=0.093  Score=49.77  Aligned_cols=83  Identities=18%  Similarity=0.297  Sum_probs=50.9

Q ss_pred             cCCCCccCCCCcceeecCC---------------ccCCCCcee-eCCCCCCCCcccccCCCCCCC-CCCCCC--------
Q psy2060          28 GLPDNEGLEKRVQTFVDGG---------------HRTLDLLHD-MGARYHWGDTCETDITKSDCK-GVCSPG--------   82 (193)
Q Consensus        28 C~~g~~g~~~~c~~~~~gg---------------~~~~~~~~C-~C~~g~~G~~C~~~~~~~~C~-~pC~~g--------   82 (193)
                      |.|||+|-. .|.+++-.|               .+...++.| .|..||.|+.=--.-  ..|. -||..|        
T Consensus       846 CqpG~WgFP-eCr~CqCNgHA~~Cd~~tGaCi~CqD~T~G~~CdrCl~GyyGdP~lg~g--~~CrPCpCP~gp~Sg~~~A  922 (1758)
T KOG0994|consen  846 CQPGYWGFP-ECRPCQCNGHADTCDPITGACIDCQDSTTGHSCDRCLDGYYGDPRLGSG--IGCRPCPCPDGPASGRQHA  922 (1758)
T ss_pred             cCCCccCCC-cCccccccCcccccCccccccccccccccccchhhhhccccCCcccCCC--CCCCCCCCCCCCccchhcc
Confidence            888887764 466665322               455567888 488998865322111  2454 455543        


Q ss_pred             cEEeeCC-CCceecccCCCCCCccccccccceecccC
Q psy2060          83 ATCSLNP-SGGYICDDCSLAGSYEHYDRLCRLRARSF  118 (193)
Q Consensus        83 g~C~~~~-~~~~~C~~C~~g~~~~~~g~~C~~~~~sF  118 (193)
                      ..|..+. .....|. |.+||.    |.+|+.-...|
T Consensus       923 ~sC~~d~~t~~ivC~-C~~GY~----G~RCe~CA~~~  954 (1758)
T KOG0994|consen  923 DSCYLDTRTQQIVCH-CQEGYS----GSRCEICADNH  954 (1758)
T ss_pred             ccccccccccceeee-cccCcc----ccchhhhcccc
Confidence            2455433 2556699 999999    89998754443

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=94.03  E-value=0.043  Score=38.96  Aligned_cols=39  Identities=18%  Similarity=0.190  Sum_probs=28.5

Q ss_pred             ceecCCCCccCCCCcceeecCC---ccCCCCceeeCCCCCCCCccccc
Q psy2060          25 YLSGLPDNEGLEKRVQTFVDGG---HRTLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        25 ~~cC~~g~~g~~~~c~~~~~gg---~~~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      +.-|++.|.+-      |++|.   ......+.|.|+.||+|..||+.
T Consensus        42 i~~Cp~ey~~Y------ClHG~C~yI~dl~~~~CrC~~GYtGeRCEh~   83 (139)
T PHA03099         42 IRLCGPEGDGY------CLHGDCIHARDIDGMYCRCSHGYTGIRCQHV   83 (139)
T ss_pred             cccCChhhCCE------eECCEEEeeccCCCceeECCCCcccccccce
Confidence            33488877654      45554   34456899999999999999865

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=93.81  E-value=0.015  Score=33.17  Aligned_cols=16  Identities=6%  Similarity=-0.452  Sum_probs=15.1

Q ss_pred             ccCCCCceeeCCCCCC
Q psy2060          47 HRTLDLLHDMGARYHW   62 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~   62 (193)
                      .|+.|+|.|.|++||.
T Consensus        19 ~N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen   19 VNTEGSYSCSCPPGYE   34 (42)
T ss_dssp             EEETTEEEEEESTTEE
T ss_pred             EcCCCCEEeeCCCCcE
Confidence            7999999999999997

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PHA02887 EGF-like protein; Provisional

Probab=93.52  E-value=0.053  Score=37.85  Aligned_cols=23  Identities=17%  Similarity=0.044  Sum_probs=18.9

Q ss_pred             ccCCCCceeeCCCCCCCCccccc
Q psy2060          47 HRTLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      ........|.|++||+|..|+..
T Consensus       102 I~dL~epsCrC~~GYtG~RCE~v  124 (126)
T PHA02887        102 IIDLDEKFCICNKGYTGIRCDEV  124 (126)
T ss_pred             cccCCCceeECCCCcccCCCCcc
Confidence            34456799999999999999853

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=93.44  E-value=0.085  Score=28.29  Aligned_cols=27  Identities=26%  Similarity=0.488  Sum_probs=21.4

Q ss_pred             CCCCCCcEEeeCCCCceecccCCCCCCcccccccc
Q psy2060          77 GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLC  111 (193)
Q Consensus        77 ~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C  111 (193)
                      ..|.+.|+|+..   ..+|. |..+|.    |+.|
T Consensus         6 ~~C~~~G~C~~~---~g~C~-C~~g~~----G~~C   32 (32)
T PF07974_consen    6 NICSGHGTCVSP---CGRCV-CDSGYT----GPDC   32 (32)
T ss_pred             CccCCCCEEeCC---CCEEE-CCCCCc----CCCC
Confidence            368899999843   35899 999998    7766

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=92.94  E-value=0.083  Score=37.52  Aligned_cols=33  Identities=27%  Similarity=0.573  Sum_probs=27.7

Q ss_pred             CCCCCCcEEeeCC-CCceecccCCCCCCccccccccceec
Q psy2060          77 GVCSPGATCSLNP-SGGYICDDCSLAGSYEHYDRLCRLRA  115 (193)
Q Consensus        77 ~pC~~gg~C~~~~-~~~~~C~~C~~g~~~~~~g~~C~~~~  115 (193)
                      +.|.|| +|.-.+ ...+.|. |+.||.    |.+||...
T Consensus        51 ~YClHG-~C~yI~dl~~~~Cr-C~~GYt----GeRCEh~d   84 (139)
T PHA03099         51 GYCLHG-DCIHARDIDGMYCR-CSHGYT----GIRCQHVV   84 (139)
T ss_pred             CEeECC-EEEeeccCCCceeE-CCCCcc----ccccccee
Confidence            789997 897654 3788999 999999    99999864

>smart00051 DSL delta serrate ligand

Probab=92.90  E-value=0.13  Score=32.17  Aligned_cols=46  Identities=20%  Similarity=0.325  Sum_probs=32.2

Q ss_pred             CceeeCCCCCCCCcccccCCCCCCC--CCCCCCcEEeeCCCCceecccCCCCCCcccccccc
Q psy2060          52 LLHDMGARYHWGDTCETDITKSDCK--GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLC  111 (193)
Q Consensus        52 ~~~C~C~~g~~G~~C~~~~~~~~C~--~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C  111 (193)
                      .+.-.|+++|.|..|+.     .|.  +-+.++.+|...  +  .|. |++|+.    |..|
T Consensus        16 ~~rv~C~~~~yG~~C~~-----~C~~~~d~~~~~~Cd~~--G--~~~-C~~Gw~----G~~C   63 (63)
T smart00051       16 QIRVTCDENYYGEGCNK-----FCRPRDDFFGHYTCDEN--G--NKG-CLEGWM----GPYC   63 (63)
T ss_pred             EEEeeCCCCCcCCccCC-----EeCcCccccCCccCCcC--C--CEe-cCCCCc----CCCC
Confidence            34557999999999963     565  446677778432  2  356 879998    7766

>PHA02887 EGF-like protein; Provisional

Probab=92.88  E-value=0.093  Score=36.66  Aligned_cols=32  Identities=16%  Similarity=0.263  Sum_probs=25.9

Q ss_pred             CCCCCCcEEeeCC-CCceecccCCCCCCcccccccccee
Q psy2060          77 GVCSPGATCSLNP-SGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        77 ~pC~~gg~C~~~~-~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      +.|.+ |+|.-.. .....|. |+.||.    |.+|+..
T Consensus        92 ~YCiH-G~C~yI~dL~epsCr-C~~GYt----G~RCE~v  124 (126)
T PHA02887         92 DFCIN-GECMNIIDLDEKFCI-CNKGYT----GIRCDEV  124 (126)
T ss_pred             CEeeC-CEEEccccCCCceeE-CCCCcc----cCCCCcc
Confidence            78886 5998654 3778899 999999    9999864

>KOG1226|consensus

Probab=92.69  E-value=0.18  Score=45.88  Aligned_cols=67  Identities=16%  Similarity=0.232  Sum_probs=42.6

Q ss_pred             e-cCCCCccCCCCcceeecC------------CccC---CCC-----ceeeCCCCCC----CCcccccCCCCCCC----C
Q psy2060          27 S-GLPDNEGLEKRVQTFVDG------------GHRT---LDL-----LHDMGARYHW----GDTCETDITKSDCK----G   77 (193)
Q Consensus        27 c-C~~g~~g~~~~c~~~~~g------------g~~~---~~~-----~~C~C~~g~~----G~~C~~~~~~~~C~----~   77 (193)
                      | |.+||.|..  ||-..+.            ..+.   .+.     -.|.|.+...    |.+||-+.-  .|+    .
T Consensus       480 C~C~~G~~G~~--CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CGqC~C~~~~~~~i~G~fCECDnf--sC~r~~g~  555 (783)
T KOG1226|consen  480 CRCDEGWLGKK--CECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCGQCVCHKPDNGKIYGKFCECDNF--SCERHKGV  555 (783)
T ss_pred             eecCCCCCCCc--ccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCCceEecCCCCCceeeeeeeccCc--ccccccCc
Confidence            6 999999997  8743320            0111   122     3566765555    999997744  777    6


Q ss_pred             CCCCCcEEeeCCCCceecccCCCCCC
Q psy2060          78 VCSPGATCSLNPSGGYICDDCSLAGS  103 (193)
Q Consensus        78 pC~~gg~C~~~~~~~~~C~~C~~g~~  103 (193)
                      .|.+.|.|.=.     +|. |.+|++
T Consensus       556 lC~g~G~C~CG-----~Cv-C~~Gwt  575 (783)
T KOG1226|consen  556 LCGGHGRCECG-----RCV-CNPGWT  575 (783)
T ss_pred             ccCCCCeEeCC-----cEE-cCCCCc
Confidence            89988888522     366 666665

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=91.56  E-value=0.13  Score=27.59  Aligned_cols=15  Identities=13%  Similarity=-0.035  Sum_probs=13.3

Q ss_pred             CceeeCCCCCCCCcc
Q psy2060          52 LLHDMGARYHWGDTC   66 (193)
Q Consensus        52 ~~~C~C~~g~~G~~C   66 (193)
                      ..+|.|.+||+|+.|
T Consensus        18 ~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen   18 CGRCVCDSGYTGPDC   32 (32)
T ss_pred             CCEEECCCCCcCCCC
Confidence            579999999999887

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>KOG4260|consensus

Probab=91.45  E-value=0.22  Score=40.10  Aligned_cols=46  Identities=24%  Similarity=0.575  Sum_probs=37.1

Q ss_pred             CCCCCCCCcccccCCCCCCC----CCCCCCcEEeeCC--CCceecccCCCCCCccccccccce
Q psy2060          57 GARYHWGDTCETDITKSDCK----GVCSPGATCSLNP--SGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        57 C~~g~~G~~C~~~~~~~~C~----~pC~~gg~C~~~~--~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      ||+|-.|+.|.      .|.    .||...|.|...-  .++-+|. |.+||+    |+.|..
T Consensus       132 Cp~gtyGpdCl------~Cpggser~C~GnG~C~GdGsR~GsGkCk-C~~GY~----Gp~C~~  183 (350)
T KOG4260|consen  132 CPDGTYGPDCL------QCPGGSERPCFGNGSCHGDGSREGSGKCK-CETGYT----GPLCRY  183 (350)
T ss_pred             cCCCCcCCccc------cCCCCCcCCcCCCCcccCCCCCCCCCccc-ccCCCC----Cccccc
Confidence            89999999997      564    7899999998542  3666899 999999    777754

>KOG3509|consensus

Probab=90.58  E-value=0.41  Score=45.07  Aligned_cols=121  Identities=17%  Similarity=0.162  Sum_probs=64.3

Q ss_pred             CCCCCCCCcccccCCCCCCC-CCCCCCcEEeeCCCCceecccCCCCCCccccccccceec----ccCC------------
Q psy2060          57 GARYHWGDTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRA----RSFP------------  119 (193)
Q Consensus        57 C~~g~~G~~C~~~~~~~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~~----~sF~------------  119 (193)
                      |+..+.+..++..    .|. .+|..+++|......+|.+. |+....    ...|+...    ..|.            
T Consensus       161 ~~~~~~~~~~~~~----~~~~~~~q~g~tC~~~~~~~~~~~-~~~~~~----~~~c~~~~~r~~~~f~~~~~g~~~~~~~  231 (964)
T KOG3509|consen  161 CPTSEGGPGTEPI----HCAQPVCQGGATCEVRNGKGYSLE-CPDCKV----RVVCEACKPRAFCPFEKSVEGCLKCFCF  231 (964)
T ss_pred             CcccCCCCccccc----cccCcccccceeEEecCCcceeee-cccccc----ceehhhccCceecccccccccccceeec
Confidence            4444455556544    667 99999999998877888888 876544    44455421    1111            


Q ss_pred             -------CcceEEecCCCCCceeEEEEEEEeCCC--CeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEc
Q psy2060         120 -------KNSFLTFPALKQRNRLHIKLQFSTLHD--SGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNR  189 (193)
Q Consensus       120 -------g~syl~~~~~~~~~~~~i~~~f~T~~~--~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s  189 (193)
                             ...++.+.......+......|.+...  +.++.+... ....+|+++.+..|.  +-++|..+.++..+..
T Consensus       232 ~vp~~~e~S~~~~~~~h~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~f~~lt~~~g~--~g~~~~~~~~~~~~~~  307 (964)
T KOG3509|consen  232 GVPRPSESSLHAFRAIHGATLHVDSLGVFFSDSEHRDILGNFLFS-SFKDGFRALTLDGGT--DGVRYDCGLPQREDRL  307 (964)
T ss_pred             CCCccccchhhhHhhhccchhccchheeecccccccccccccccc-ccccceeeeccCCCC--ccccccccCcchhhhh
Confidence                   011111111111111111122333322  233333322 456789999988888  7777777766555443

>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates

Probab=88.65  E-value=0.15  Score=31.82  Aligned_cols=37  Identities=11%  Similarity=0.069  Sum_probs=19.1

Q ss_pred             cCCCCccCCCCcceeecCCccCCCCcee------eCCCCCCCCcc
Q psy2060          28 GLPDNEGLEKRVQTFVDGGHRTLDLLHD------MGARYHWGDTC   66 (193)
Q Consensus        28 C~~g~~g~~~~c~~~~~gg~~~~~~~~C------~C~~g~~G~~C   66 (193)
                      |.+.|.|..  |.+--..-.+..+.|.|      +|.+||+|+.|
T Consensus        21 C~~nyyG~~--C~~~C~~~~d~~ghy~Cd~~G~~~C~~Gw~G~~C   63 (63)
T PF01414_consen   21 CDENYYGPN--CSKFCKPRDDSFGHYTCDSNGNKVCLPGWTGPNC   63 (63)
T ss_dssp             --TTEETTT--T-EE---EEETTEEEEE-SS--EEE-TTEESTTS
T ss_pred             CCCCCCCcc--ccCCcCCCcCCcCCcccCCCCCCCCCCCCcCCCC
Confidence            788899997  76532211122233443      57899999887

In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.

>KOG1836|consensus

Probab=87.18  E-value=1.2  Score=44.86  Aligned_cols=50  Identities=18%  Similarity=0.076  Sum_probs=32.5

Q ss_pred             CCCcee-cCCCCccCC-----CCcceee--cCC----ccCCCCceee-CCCCCCCCcccccCC
Q psy2060          22 FQPYLS-GLPDNEGLE-----KRVQTFV--DGG----HRTLDLLHDM-GARYHWGDTCETDIT   71 (193)
Q Consensus        22 ~~~~~c-C~~g~~g~~-----~~c~~~~--~gg----~~~~~~~~C~-C~~g~~G~~C~~~~~   71 (193)
                      .++..- |.+||+|..     ..|..+-  +++    ........|+ ||++|+|..|+...+
T Consensus       754 ~G~~C~~C~~GfYg~~~~~~~~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c~d  816 (1705)
T KOG1836|consen  754 FGGQCAQCVDGFYGLPDLGTSGDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEECAD  816 (1705)
T ss_pred             CCCchhhhcCCCCCccccCCCCCCccCCCCCChhhcCcCcccceecCCCCCCCcccccccCCC
Confidence            444543 888888774     1133322  123    2335678999 999999999997644

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=86.96  E-value=0.34  Score=26.83  Aligned_cols=34  Identities=26%  Similarity=0.517  Sum_probs=22.3

Q ss_pred             CC-CCCCCCcEEeeCCCCceecccCCCCCCcccccccc
Q psy2060          75 CK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLC  111 (193)
Q Consensus        75 C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C  111 (193)
                      |. ..|...+.|+...++.+.|. |-+||...  |..|
T Consensus         2 C~~~~cP~NA~C~~~~dG~eecr-Cllgyk~~--~~~C   36 (37)
T PF12946_consen    2 CIDTKCPANAGCFRYDDGSEECR-CLLGYKKV--GGKC   36 (37)
T ss_dssp             -SSS---TTEEEEEETTSEEEEE-E-TTEEEE--TTEE
T ss_pred             ccCccCCCCcccEEcCCCCEEEE-eeCCcccc--CCCc
Confidence            55 67888899998766999999 99988643  4444

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=83.98  E-value=0.38  Score=36.61  Aligned_cols=52  Identities=21%  Similarity=0.395  Sum_probs=37.4

Q ss_pred             CCCCceeeCCCCCC---CCcccccCCCCCCC------CCCCCCcEEeeCC----CCceecccCCCCCCc
Q psy2060          49 TLDLLHDMGARYHW---GDTCETDITKSDCK------GVCSPGATCSLNP----SGGYICDDCSLAGSY  104 (193)
Q Consensus        49 ~~~~~~C~C~~g~~---G~~C~~~~~~~~C~------~pC~~gg~C~~~~----~~~~~C~~C~~g~~~  104 (193)
                      ..+.|.|.|.+||.   -..||...   .|.      .+|..-++|+..+    ...|+|. |..+|..
T Consensus        16 MSNHfEC~Cnegfvl~~EntCE~kv---~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~-C~~gY~~   80 (197)
T PF06247_consen   16 MSNHFECKCNEGFVLKNENTCEEKV---ECDKLENVNKPCGDYAKCINQANKGEERAYKCD-CINGYIL   80 (197)
T ss_dssp             ESSEEEEEESTTEEEEETTEEEE-------SG-GGTTSEEETTEEEEE-SSTTSSTSEEEE-E-TTEEE
T ss_pred             ccCceEEEcCCCcEEccccccccce---ecCcccccCccccchhhhhcCCCcccceeEEEe-cccCcee
Confidence            35679999999997   56787654   554      6999999999765    2789999 9998864

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=83.58  E-value=1.4  Score=34.30  Aligned_cols=35  Identities=31%  Similarity=0.800  Sum_probs=26.2

Q ss_pred             CCcccccCCCCCCC---CCCCCCcEEeeCCCCceecccCCCCCCc
Q psy2060          63 GDTCETDITKSDCK---GVCSPGATCSLNPSGGYICDDCSLAGSY  104 (193)
Q Consensus        63 G~~C~~~~~~~~C~---~pC~~gg~C~~~~~~~~~C~~C~~g~~~  104 (193)
                      +..|+ +.  ++|.   .+|.  ..|.+.. ++|.|. |+.||..
T Consensus       181 ~~~C~-~~--~~C~~~~~~c~--~~C~~~~-g~~~c~-c~~g~~~  218 (224)
T cd01475         181 GKICV-VP--DLCATLSHVCQ--QVCISTP-GSYLCA-CTEGYAL  218 (224)
T ss_pred             cccCc-Cc--hhhcCCCCCcc--ceEEcCC-CCEEeE-CCCCccC
Confidence            56675 33  3786   4566  4899887 999999 9999874

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=83.08  E-value=0.56  Score=35.72  Aligned_cols=76  Identities=12%  Similarity=0.204  Sum_probs=45.1

Q ss_pred             CCCcee-cCCCCccCC-CCcceeec-------------------CC-ccCCCCceeeCCCCCC--CCcccccCCCCCCC-
Q psy2060          22 FQPYLS-GLPDNEGLE-KRVQTFVD-------------------GG-HRTLDLLHDMGARYHW--GDTCETDITKSDCK-   76 (193)
Q Consensus        22 ~~~~~c-C~~g~~g~~-~~c~~~~~-------------------gg-~~~~~~~~C~C~~g~~--G~~C~~~~~~~~C~-   76 (193)
                      ...|.| |.+||.-.. ..||.-++                   .+ ......|.|.|.+||+  ...|-..    .|. 
T Consensus        17 SNHfEC~Cnegfvl~~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~vCvp~----~C~~   92 (197)
T PF06247_consen   17 SNHFECKCNEGFVLKNENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQGVCVPN----KCNN   92 (197)
T ss_dssp             SSEEEEEESTTEEEEETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSSEEEG----GGSS
T ss_pred             cCceEEEcCCCcEEccccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCCeEchh----hcCc
Confidence            356889 999995321 12553322                   11 2445789999999997  3456543    788 


Q ss_pred             CCCCCCcEEeeCC--CCceecccCCCCCC
Q psy2060          77 GVCSPGATCSLNP--SGGYICDDCSLAGS  103 (193)
Q Consensus        77 ~pC~~gg~C~~~~--~~~~~C~~C~~g~~  103 (193)
                      ..|. .|.|+..+  .....|. |.-|..
T Consensus        93 ~~Cg-~GKCI~d~~~~~~~~CS-C~IGkV  119 (197)
T PF06247_consen   93 KDCG-SGKCILDPDNPNNPTCS-CNIGKV  119 (197)
T ss_dssp             ---T-TEEEEEEEGGGSEEEEE-E-TEEE
T ss_pred             eecC-CCeEEecCCCCCCceeE-eeeceE
Confidence            8888 58998664  2456899 977654

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>KOG0994|consensus

Probab=83.06  E-value=0.81  Score=43.81  Aligned_cols=20  Identities=15%  Similarity=0.144  Sum_probs=16.3

Q ss_pred             CCcee-cCCCCccCCCCcceeec
Q psy2060          23 QPYLS-GLPDNEGLEKRVQTFVD   44 (193)
Q Consensus        23 ~~~~c-C~~g~~g~~~~c~~~~~   44 (193)
                      +...| |.+||+|.-  |+.+-+
T Consensus       932 ~~ivC~C~~GY~G~R--Ce~CA~  952 (1758)
T KOG0994|consen  932 QQIVCHCQEGYSGSR--CEICAD  952 (1758)
T ss_pred             cceeeecccCccccc--hhhhcc
Confidence            55568 999999995  998765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
1pz7_A	204	Agrin; structural protein; 1.42A {Gallus gallus} S	1e-20
3v64_A	191	Low-density lipoprotein receptor-related protein;	1e-16
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	4e-15
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	1e-09
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	1e-14
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	1e-11
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	3e-09
3pve_A	189	Agrin, AGRN protein; mRNA splicing, structural gen	1e-14
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	2e-14
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	1e-13
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	1e-13
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	5e-06
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	4e-13
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	1e-12
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	1e-12
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	3e-10
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	4e-08
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	4e-07
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	5e-12
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	1e-05
2r16_A	182	Neurexin-1-alpha; beta-sandwich, cell adhesion, sp	3e-11
1f5f_A	205	SHBG, sex hormone-binding globulin; jellyroll, sig	1e-10
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	2e-10
3bod_A	178	Neurexin-1-alpha; neurexin1D, LNS6, alternative sp	4e-10
1d2s_A	170	SHBG, sex hormone-binding globulin; steroid transp	7e-10
2r1b_A	220	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	2e-08
2r1d_A	226	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	3e-08

>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Length = 204

 Score = 84.1 bits (208), Expect = 1e-20
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 107 YDRLCRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALE 166
           Y        +S     +   P+ K     H +L   T    GL+L++G+  ER D+IAL 
Sbjct: 22  YMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGLERSDYIALA 81

Query: 167 LTDSGRSVQFSWSLGSEVARL 187
           + D G  VQ  + LGS+   L
Sbjct: 82  IVD-GF-VQMMYDLGSKPVVL 100

>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Length = 191

 Score = 73.3 bits (180), Expect = 1e-16
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 111 CRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDS 170
                           PA K     H +L   T    GL+L+ G+  ER D++AL + D 
Sbjct: 13  IEYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAAERADYMALAIVD- 71

Query: 171 GRSVQFSWSLGSEVARL 187
           G  +Q S+ LGS+   L
Sbjct: 72  GH-LQLSYDLGSQPVVL 87

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 71.6 bits (175), Expect = 4e-15
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 120 KNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWS 179
           K+S++    L+    +H+  QF T    GL+LYN    + +DFI +EL   G  + + + 
Sbjct: 13  KSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNS--GDGNDFIVVELVK-GY-LHYVFD 68

Query: 180 LGSEVARL 187
           LG+    +
Sbjct: 69  LGNGANLI 76

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 24/187 (12%), Positives = 60/187 (32%), Gaps = 17/187 (9%)

Query: 19  NGPFQPYLSGLPDNEGLEKRVQTFVDGG-----------HRTLDLLHDMGARYHWGDTCE 67
           +     Y+ G+                G            R  DL+ D        +   
Sbjct: 122 DLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGC 181

Query: 68  TDITKSDCKGVCSPGATCSLNPSGGYICD--DCSLAGSYEHYDRLCRLRARSFPKNSFLT 125
              + +  +  CS    C L    G+ CD    S +G   +      + ++   + ++  
Sbjct: 182 EGPSTTCQEDSCSNQGVC-LQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKW 240

Query: 126 FPALK-QRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEV 184
            P  +       + + FST+    +L+     +   D++ L +      +   +++G++ 
Sbjct: 241 PPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQG--KIGVKFNVGTDD 298

Query: 185 ARLNRAD 191
             +  ++
Sbjct: 299 IAIEESN 305

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score = 70.5 bits (172), Expect = 1e-14
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 115 ARSFPKNSFLTF-PALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRS 173
           + S   +   T+ P +K+ +  +I +   T     LL Y G   +  DF+A+E+   G+ 
Sbjct: 12  SVSSGGDCVRTYRPEIKKGSYNNIVVHVKTAVADNLLFYLGS-AKFIDFLAIEMRK-GK- 68

Query: 174 VQFSWSLGSEVARL 187
           V F W +GS V R+
Sbjct: 69  VSFLWDVGSGVGRV 82

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score = 61.6 bits (149), Expect = 1e-11
 Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 8/108 (7%)

Query: 82  GATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKNSFLTF--PALKQRNRLHIKL 139
                L        D     G               F    +     P     N   +  
Sbjct: 175 NKPIGLWNFREKEGDCK---GCTVSPQVEDSEGTIQFDGEGYALVSRPIRWYPNISTVMF 231

Query: 140 QFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARL 187
           +F T   S LL+Y     +  DF+++EL+D G  V+ S+ LGS +  +
Sbjct: 232 KFRTFSSSALLMYLAT-RDLKDFMSVELSD-GH-VKVSYDLGSGMTSV 276

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score = 54.7 bits (131), Expect = 3e-09
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 97  DCSLAGSYEHYDRLCR---LRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYN 153
           +   +  Y    + C    +   SFPK  F+   A+       I L FST ++SG++L  
Sbjct: 368 NILSSPDYVGVTKGCSLENVYTVSFPKPGFVELAAVSIDVGTEINLSFSTRNESGIILLG 427

Query: 154 GRYNERHDFIALELTDSGRSVQFSWSLGSEVAR 186
                   + A+ L      ++   S G+   R
Sbjct: 428 S--GGGQAYYAIFLNKG--RLEVHLSSGTRTMR 456

>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Length = 189

 Score = 68.0 bits (166), Expect = 1e-14
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 117 SFPKNSFLTFPALKQ-----RNRLHIKLQFSTLHDSGLLLYNGRYNE-RHDFIALELTDS 170
            F   S+L    L         ++ +++ F     SGLLLYNG+  + + DF++L L + 
Sbjct: 13  DFNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGDFVSLALHN- 71

Query: 171 GRSVQFSWSLGSEVARL 187
              ++F + LG   A +
Sbjct: 72  RH-LEFRYDLGKGAAII 87

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Length = 195

 Score = 67.2 bits (164), Expect = 2e-14
 Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 11/83 (13%)

Query: 114 RARSFPKNSFLTFPAL-----KQRNRLHIKLQFSTLHDSGLLLYNGRY----NERHDFIA 164
               F  + FL FP              I+L+  T   SGLLL+ G       +  DFI+
Sbjct: 6   YGAYFHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFIS 65

Query: 165 LELTDSGRSVQFSWSLGSEVARL 187
           L L D G  + F + LGS  ARL
Sbjct: 66  LGLQD-GH-LVFRYQLGSGEARL 86

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Length = 184

 Score = 65.2 bits (159), Expect = 1e-13
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 117 SFPKNSFLTFPALKQR---NRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRS 173
           +F  + +  +   +     +   I L F TL  +GL+L+ G+     D++ L L + G  
Sbjct: 9   TFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGK---SADYVNLALKN-GA- 63

Query: 174 VQFSWSLGSEVARL 187
           V    +LGS     
Sbjct: 64  VSLVINLGSGAFEA 77

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383

 Score = 67.3 bits (164), Expect = 1e-13
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 98  CSLAGSYEHYDRLCRLRARSFPKNSFLTFPALKQ--RNRLHIKLQFSTLHDSGLLLYNGR 155
           C++  +  +     +       +NS L  P  +   R RL ++L   T   SGL+ Y   
Sbjct: 9   CAVDTAPGYVAGAHQF---GLSQNSHLVLPLQQSDVRKRLQVQLSIRTFASSGLIYYVAH 65

Query: 156 YNERHDFIALELTDSGRSVQFSWSLGSEVARL 187
            N + D+  L+L + GR + F + LG    ++
Sbjct: 66  QN-QMDYATLQLQE-GR-LHFMFDLGKGRTKV 94

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383

 Score = 45.0 bits (106), Expect = 5e-06
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 111 CRLRARSFPKNSF--LTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELT 168
                  F  + +  L     K R  L I L+F T   +G+LL     + + D I LE+ 
Sbjct: 196 VAQEGTFFEGSGYAALVKEGYKVRLDLQITLEFRTTSKNGVLLGIS--SAKVDAIGLEIV 253

Query: 169 DSGRSVQFSWSLGS 182
           D    V F  + G+
Sbjct: 254 DG--KVLFHVNNGA 265

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 66.0 bits (160), Expect = 4e-13
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 117 SFP--KNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSV 174
            FP  +  +  FP         +  Q  T    GL+LY        DF+ L LT  GR +
Sbjct: 2   EFPGAEGQWTRFPKWNACCESEMSFQLKTRSARGLVLYFDD-EGFCDFLELILTRGGR-L 59

Query: 175 QFSWSLGSEVARLNRADS 192
           Q S+S+          D+
Sbjct: 60  QLSFSIFCAEPATLLTDT 77

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 64.9 bits (157), Expect = 1e-12
 Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 10/137 (7%)

Query: 54  HDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL 113
            D       G +      + +  GVC  G  CS       +CD        +   +    
Sbjct: 174 LDDEPPNSGGGSPCEAGEEGEG-GVCLNGGVCS-VVDDQAVCDCSRTGFRGKDCSQGKEE 231

Query: 114 RARSFPKNSFLTFPALKQRNR---LHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDS 170
              +F  + +  +   +   +     I L F TL  +GL+L+ G   +  D++ L L + 
Sbjct: 232 YIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTG---KSADYVNLALKNG 288

Query: 171 GRSVQFSWSLGSEVARL 187
             +V    +LGS     
Sbjct: 289 --AVSLVINLGSGAFEA 303

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 64.9 bits (157), Expect = 1e-12
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 36  EKRVQTFVDGGHRTLDLLHDMGARYHWGDTCETDITK-SDCKGVCSPGATCSLNPSGGYI 94
           ++ +   + G H  L+  +             +  +         +      ++      
Sbjct: 761 QQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGD 820

Query: 95  CDDCSLAGSYEHYDRLCRLRARSFP-KNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYN 153
            D C L   +   + +      +F  K+S++    L+    +H+  QF T    GL+LYN
Sbjct: 821 IDYCELNARFGFRNIIAD--PVTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYN 878

Query: 154 GRYNERHDFIALELTDSGRSVQFSWSLGSEVARL 187
               + +DFI +EL      + + + LG+    +
Sbjct: 879 S--GDGNDFIVVELVKG--YLHYVFDLGNGANLI 908

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 57.9 bits (139), Expect = 3e-10
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 17/127 (13%)

Query: 76  KGVCSPGATCSLNPSGGYICDDCSLA----GSYEHYDRLCRLRARSFPKNSFLTFPALKQ 131
           K V        L  S      D  +      +++  +             SF++ P    
Sbjct: 381 KEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKWNA 440

Query: 132 RNRLHIKLQFSTLHDSGLLLYNG-----------RYNERHDFIALELTDSGRSVQFSWSL 180
           +    I   F T   +GL+L++                + DF A+E+ D G  +     +
Sbjct: 441 KKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLD-GH-LYLLLDM 498

Query: 181 GSEVARL 187
           GS   ++
Sbjct: 499 GSGTIKI 505

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 51.4 bits (122), Expect = 4e-08
 Identities = 17/118 (14%), Positives = 40/118 (33%), Gaps = 8/118 (6%)

Query: 79   CSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKNSFLTFPALKQ----RNR 134
            CS    C L    G+ CD CS+                       +T+            
Sbjct: 1025 CSNQGVC-LQQWDGFSCD-CSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRPSTRA 1082

Query: 135  LHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRADS 192
              + + FST+    +L+     +   D++ L +      +   +++G++   +  +++
Sbjct: 1083 DRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQG--KIGVKFNVGTDDIAIEESNA 1138

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 48.7 bits (115), Expect = 4e-07
 Identities = 24/152 (15%), Positives = 52/152 (34%), Gaps = 4/152 (2%)

Query: 42  FVDGGHRTLDLLHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLA 101
           F+DG  + +  + ++ +      +C  +  K      C     C  +    Y+CD     
Sbjct: 590 FIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCR-DGWNRYVCDCSGTG 648

Query: 102 GSYEHYDRLCRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHD 161
                 +R   + +        +  P +       + L+F +    G+L+      +  D
Sbjct: 649 YLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATT-SRDSAD 707

Query: 162 FIALELTDSGRSVQFSWSLGSEVARLNRADSI 193
            + LEL      V+ + +LG     L    ++
Sbjct: 708 TLRLELDA--GRVKLTVNLGKGPETLFAGYNL 737

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394

 Score = 62.3 bits (151), Expect = 5e-12
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 117 SFPKNSFL--TFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSV 174
              +NS +   F   K +NRL I+L+  T  +SGLL Y  R N   DF  ++L + G   
Sbjct: 39  GLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARIN-HADFATVQLRN-GF-P 95

Query: 175 QFSWSLGSEVARL 187
            FS+ LGS     
Sbjct: 96  YFSYDLGSGDTST 108

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 118 FPKNSFLTF-PALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQF 176
           F    F       K    L ++ +F T   +G+LL     +++ D + +E+ D    + F
Sbjct: 216 FDGTGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVS--SQKMDGMGIEMIDE--KLMF 271

Query: 177 SWSLGS 182
               G+
Sbjct: 272 HVDNGA 277

>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Length = 182

 Score = 58.7 bits (142), Expect = 3e-11
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 115 ARSFPKNSFLT--FPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGR 172
             S+  + F+    P +       + L+F +    G+L+      +  D + LEL   GR
Sbjct: 7   VLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATT-SRDSADTLRLELDA-GR 64

Query: 173 SVQFSWSLGSEVARL 187
            V+ + +LG     L
Sbjct: 65  -VKLTVNLGKGPETL 78

>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Length = 205

 Score = 57.2 bits (138), Expect = 1e-10
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 111 CRLRARSFPKN--SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELT 168
               +    +   + +TF  L +  +     +  T    G++ Y    N + D+  L L 
Sbjct: 15  AVHLSNGPGQEPIAVMTFD-LTKITKTSSSFEVRTWDPEGVIFYGDT-NPKDDWFMLGLR 72

Query: 169 DSGRSVQFSWSLGSEVARL 187
           D GR  +           +
Sbjct: 73  D-GR-PEIQLHNHWAQLTV 89

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Length = 422

 Score = 57.9 bits (139), Expect = 2e-10
 Identities = 20/111 (18%), Positives = 30/111 (27%), Gaps = 8/111 (7%)

Query: 79  CSPGATCSLNPSGGYIC-DDCSLAGSYEHYDRLCRLRARSFPKNSFLTFPALK-QRNRLH 136
              G   S        C D                   R F     +     + Q  RL 
Sbjct: 8   GRGGLKLS---QDMDTCEDILPCVPFSVAKSVKSLYLGRMFSGTPVIRLRFKRLQPTRLV 64

Query: 137 IKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARL 187
            +  F T    G+LL+ G + +   +I L L   GR ++            
Sbjct: 65  AEFDFRTFDPEGILLFAGGHQD-STWIVLALRA-GR-LELQLRYNGVGRVT 112

>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Length = 178

 Score = 55.3 bits (133), Expect = 4e-10
 Identities = 9/81 (11%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 116 RSFPKNSFLTFP----ALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSG 171
                   +T+              + + FST+    +L+     +   D++ L +   G
Sbjct: 8   IFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQ-G 66

Query: 172 RSVQFSWSLGSEVARLNRADS 192
           + +   +++G++   +  +++
Sbjct: 67  K-IGVKFNVGTDDIAIEESNA 86

>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Length = 170

 Score = 54.5 bits (131), Expect = 7e-10
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 117 SFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQF 176
                + +TF    +  +     +  T    G++ Y    N + D+  L L D GR  + 
Sbjct: 11  GQEPIAVMTFDLT-KITKTSSSFEVRTWDPEGVIFYGDT-NPKDDWFMLGLRD-GR-PEI 66

Query: 177 SWSLGSEVARL 187
                     +
Sbjct: 67  QLHNHWAQLTV 77

>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Length = 220

 Score = 51.7 bits (123), Expect = 2e-08
 Identities = 9/81 (11%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 116 RSFPKNSFLTFPALKQR----NRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSG 171
                   +T+              + + FST+    +L+     +   D++ L +   G
Sbjct: 14  IFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQ-G 72

Query: 172 RSVQFSWSLGSEVARLNRADS 192
           + +   +++G++   +  +++
Sbjct: 73  K-IGVKFNVGTDDIAIEESNA 92

>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Length = 226

 Score = 50.8 bits (121), Expect = 3e-08
 Identities = 9/82 (10%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 115 ARSFPKNSFLTF----PALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDS 170
                    +T+              + + FST+    +L+     +   D++ L +   
Sbjct: 41  YIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQ- 99

Query: 171 GRSVQFSWSLGSEVARLNRADS 192
           G+ +   +++G++   +  +++
Sbjct: 100 GK-IGVKFNVGTDDIAIEESNA 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.62
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.59
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	99.57
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	99.52
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	99.52
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.51
1pz7_A	204	Agrin; structural protein; 1.42A {Gallus gallus} S	99.43
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	99.41
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	99.4
3pve_A	189	Agrin, AGRN protein; mRNA splicing, structural gen	99.3
3v64_A	191	Low-density lipoprotein receptor-related protein;	99.26
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.23
2r16_A	182	Neurexin-1-alpha; beta-sandwich, cell adhesion, sp	99.23
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.23
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.19
1d2s_A	170	SHBG, sex hormone-binding globulin; steroid transp	99.17
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	99.16
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	99.14
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	99.13
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.12
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.11
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	99.1
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.08
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	99.06
1f5f_A	205	SHBG, sex hormone-binding globulin; jellyroll, sig	99.05
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	99.04
2r1b_A	220	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	99.02
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	99.01
3bod_A	178	Neurexin-1-alpha; neurexin1D, LNS6, alternative sp	99.0
2r1d_A	226	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	98.99
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	98.97
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	98.95
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	98.93
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	98.9
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	98.89
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	98.88
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	98.87
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	98.86
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	98.85
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	98.84
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.84
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	98.83
1aut_L	114	Activated protein C; serine proteinase, plasma cal	98.8
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	98.78
2vh0_B	134	Activated factor XA light chain; serine protease,	98.76
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	98.76
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	98.74
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.7
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	98.67
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.67
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.64
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	98.64
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.48
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	98.45
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	98.45
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.42
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	98.41
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	98.41
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.4
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.39
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	98.36
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	98.34
1aut_L	114	Activated protein C; serine proteinase, plasma cal	98.33
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.31
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	98.27
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	98.26
2bou_A	143	EGF-like module containing mucin-like hormone rece	98.23
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	98.23
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	98.18
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	98.08
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	98.06
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	98.05
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	98.04
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.0
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	97.98
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	97.96
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.91
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	97.9
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	97.88
2vh0_B	134	Activated factor XA light chain; serine protease,	97.87
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	97.83
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	97.83
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	97.83
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	97.73
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	97.7
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	97.68
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	97.62
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	97.61
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	97.6
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	97.59
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	97.58
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	97.57
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	97.57
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	97.56
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	97.46
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	97.39
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	97.38
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	97.33
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	97.23
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	96.97
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	96.96
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	96.96
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	96.89
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	96.89
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	96.83
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.7
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	96.69
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	96.67
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	96.62
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	96.52
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	96.52
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	96.44
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	96.41
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	96.33
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	96.33
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	96.29
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	96.26
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.09
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	96.07
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	96.06
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	96.01
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	95.97
1szb_A	170	Mannose binding lectin-associated serine protease-	95.85
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	95.82
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	95.77
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	95.75
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	95.71
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	95.2
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	95.15
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	94.56
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	94.5
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	94.36
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	93.57
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	93.46
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	92.89
2wph_E	59	Coagulation factor IXA light chain; serine proteas	92.88
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	92.83
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	92.58
1nzi_A	159	Complement C1S component; calcium, innate immunity	92.49
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	92.32
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	92.08
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	91.97
1ob1_C	99	Major merozoite surface protein; immune system, im	91.9
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	91.69
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	91.6
2wph_E	59	Coagulation factor IXA light chain; serine proteas	91.47
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	91.22
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	91.04
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	89.99
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	89.66
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	89.34
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	88.96
2e26_A	725	Reelin, reeler protein; signaling protein; HET: NA	87.67
1ob1_C	99	Major merozoite surface protein; immune system, im	87.34
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	87.34
2p26_A	280	Integrin beta-2; hybrid domain, PSI domain, I-EGF	83.98
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	82.13

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.62  E-value=5e-16  Score=111.95  Aligned_cols=82  Identities=16%  Similarity=0.346  Sum_probs=72.9

Q ss_pred             CCcee-cCCCCccCCCCcceeec---------CC--ccCCCCceeeCCCCCCCCcccccCCCCCCC-CCCCCCcEEeeCC
Q psy2060          23 QPYLS-GLPDNEGLEKRVQTFVD---------GG--HRTLDLLHDMGARYHWGDTCETDITKSDCK-GVCSPGATCSLNP   89 (193)
Q Consensus        23 ~~~~c-C~~g~~g~~~~c~~~~~---------gg--~~~~~~~~C~C~~g~~G~~C~~~~~~~~C~-~pC~~gg~C~~~~   89 (193)
                      +.|.| |++||+|..  |++++|         +|  .+..++|.|.|++||+|..|+..++  +|. .||.++++|++..
T Consensus        26 g~~~C~C~~Gy~G~~--C~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~--~C~~~~C~~~g~C~~~~  101 (135)
T 2vj3_A           26 GSFECQCLQGYTGPR--CEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTD--ECASSPCLHNGRCLDKI  101 (135)
T ss_dssp             SSEEEECCTTEESTT--SCEECCTTTTCCCCSSCEEEECSSCEEEECCTTEESSSSCEECC--TTTTCCSTTTCEEEECS
T ss_pred             CCEEEECCCCCcCCc--ccccCccCCCCCCCCCCEEeCCCCCceeeCCCCCcCCcceecCC--cccCCCcCCCCEeECCC
Confidence            56889 999999997  987765         34  6778899999999999999998876  999 9999999999987


Q ss_pred             CCceecccCCCCCCcccccccccee
Q psy2060          90 SGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        90 ~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                       ++|+|. |++||.    |..|+..
T Consensus       102 -g~~~C~-C~~G~~----G~~C~~~  120 (135)
T 2vj3_A          102 -NEFQCE-CPTGFT----GHLCQVD  120 (135)
T ss_dssp             -SCEEEE-CCTTEE----SSSSCEE
T ss_pred             -CCeEEE-CCCCCc----CCccCcc
Confidence             999999 999998    9999764

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.59  E-value=1.3e-15  Score=110.58  Aligned_cols=83  Identities=19%  Similarity=0.358  Sum_probs=70.1

Q ss_pred             CCcee-cCCCCccCCCCcce---------------------eecCC--c-------cCCCCceeeCCCCCCCCcccccCC
Q psy2060          23 QPYLS-GLPDNEGLEKRVQT---------------------FVDGG--H-------RTLDLLHDMGARYHWGDTCETDIT   71 (193)
Q Consensus        23 ~~~~c-C~~g~~g~~~~c~~---------------------~~~gg--~-------~~~~~~~C~C~~g~~G~~C~~~~~   71 (193)
                      +.|.| |++||+|..  |+.                     +.++|  .       ++.++|.|.|++||+|..|+.+++
T Consensus        21 g~~~C~C~~G~~G~~--C~~~~~~~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~C~C~~G~~G~~C~~~i~   98 (143)
T 4d90_A           21 GSFSCECPDGFTDPN--CSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNIN   98 (143)
T ss_dssp             -CCEEECCTTCCTTT--TCSCCCCTTTTTSCCCCCTTSSCCCCTTCEEEECCCEETTEECCEEEECCTTEESTTSCEECC
T ss_pred             CCEEeECCCCCCCCC--CccCccccccccccccCCcCCCCCCCCCCEecCCCccccCCCCCeEeECcCCCcCCCcccCCC
Confidence            57899 999999997  875                     11244  3       566899999999999999998876


Q ss_pred             CCCCC-CCCCCCcEEeeCCCCceecccCCCCCCccccccccceec
Q psy2060          72 KSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRA  115 (193)
Q Consensus        72 ~~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~~  115 (193)
                        +|. +||.++++|++.. ++|+|. |++||.    |..|+...
T Consensus        99 --~C~~~~C~~~~~C~~~~-g~~~C~-C~~G~~----G~~c~~~~  135 (143)
T 4d90_A           99 --ECEVEPCKNGGICTDLV-ANYSCE-CPGEFM----GRNCQYKG  135 (143)
T ss_dssp             --TTTTCCSCTTCEEEEET-TEEEEE-CCTTCB----STTSCBC-
T ss_pred             --cCCCCCCCCCCEeECCC-CCeEeE-CCCCCc----cCCceecC
Confidence              999 9999999999987 999999 999999    99997653

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=99.57  E-value=2.4e-14  Score=120.65  Aligned_cols=117  Identities=21%  Similarity=0.432  Sum_probs=91.9

Q ss_pred             CcccccCCCCCCC-CCCCCCcEEeeCCCCceecccCCC-CCCccccccccceec--ccCC-CcceEEecCCCC----Cce
Q psy2060          64 DTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSL-AGSYEHYDRLCRLRA--RSFP-KNSFLTFPALKQ----RNR  134 (193)
Q Consensus        64 ~~C~~~~~~~~C~-~pC~~gg~C~~~~~~~~~C~~C~~-g~~~~~~g~~C~~~~--~sF~-g~syl~~~~~~~----~~~  134 (193)
                      ..|+...+  .|. +||.|+|+|++.+ .+|.|. |+. +|.    |+.|+...  ..|. +.+|+.|.....    ...
T Consensus       179 ~gC~~~~~--~C~~~pC~n~g~C~~~~-~~~~C~-C~~~~~~----G~~C~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  250 (410)
T 3asi_A          179 RGCEGPST--TCQEDSCSNQGVCLQQW-DGFSCD-CSMTSFS----GPLCNDPGTTYIFSKGGGQITYKWPPNDRPSTRA  250 (410)
T ss_dssp             ESCCCCSS--CCCTTSSSTTCEEEECS-SSEEEE-CTTTSEE----STTSCEECCEEEEEEEEEEEEEECCTTCCCCBSE
T ss_pred             CCCCCCCC--CcccccCCCCCEecCCC-CCceEe-ccCCccc----CCCCCCCcccccccCCCceEEEecCCCCCcccee
Confidence            34654433  899 9999999999987 999999 986 787    99998753  3453 678887743221    223


Q ss_pred             eEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEcC
Q psy2060         135 LHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRA  190 (193)
Q Consensus       135 ~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s~  190 (193)
                      ..++|.|+|..++|+|||.+......||++|+|.+|+  |+++|++|++...++++
T Consensus       251 ~~i~l~frT~~~~GlLl~~~~~~~~~~~l~l~L~~G~--l~~~~~~g~~~~~~~~~  304 (410)
T 3asi_A          251 DRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGK--IGVKFNVGTDDIAIEES  304 (410)
T ss_dssp             EEEEEEEECCCSEEEEEEEEECTTCCCEEEEEEETTE--EEEEEESSSSCEEEECC
T ss_pred             eEEEEEEEeCCCCEEEEEEecCCCCCceEEEEEeCCE--EEEEEECCCCceEEecC
Confidence            5799999999999999997642345799999999999  99999999987777754

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=99.52  E-value=2.7e-14  Score=134.91  Aligned_cols=102  Identities=27%  Similarity=0.546  Sum_probs=57.6

Q ss_pred             CCC-CCCCCCcEEeeCCCCceecccCCC-CCCccccccccce----ecccCCCcceEEecCCCC---CceeEEEEEEEeC
Q psy2060          74 DCK-GVCSPGATCSLNPSGGYICDDCSL-AGSYEHYDRLCRL----RARSFPKNSFLTFPALKQ---RNRLHIKLQFSTL  144 (193)
Q Consensus        74 ~C~-~pC~~gg~C~~~~~~~~~C~~C~~-g~~~~~~g~~C~~----~~~sF~g~syl~~~~~~~---~~~~~i~~~f~T~  144 (193)
                      +|. .||.|||+|+... ++|.|. |+. +|.    |+.|+.    ..+.|.|.+|+.|+....   .....|+|.|+|.
T Consensus       192 ~~~~~~C~ngg~C~~~~-~~~~C~-C~~~g~~----G~~Ce~~~~~~~~~F~G~~~~~y~~~~~~~~~~~~~i~l~FrT~  265 (1245)
T 3qcw_A          192 EGEGGVCLNGGVCSVVD-DQAVCD-CSRTGFR----GKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTL  265 (1245)
T ss_dssp             ---------------------------------------------CCEEEECSSCEEEEECTTSCEEESEEEEEEEEECS
T ss_pred             cCCCCCCCCCCCCccCC-CCceeE-CCCCCcc----CCccccCcccceeeeCCcEEEEEccccCcccccccEEEEEEEeC
Confidence            688 9999999999876 889999 996 777    999995    356899999999975543   2346899999999


Q ss_pred             CCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEE
Q psy2060         145 HDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVAR  186 (193)
Q Consensus       145 ~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~  186 (193)
                      .++|+|||.+   ...||++|+|.+|+  |+++|++|+|..+
T Consensus       266 ~~~GlLl~~g---~~~d~l~L~L~~G~--l~l~~~lG~g~~~  302 (1245)
T 3qcw_A          266 QRNGLMLHTG---KSADYVNLALKNGA--VSLVINLGSGAFE  302 (1245)
T ss_dssp             CSCEEEEEEC---SSSEEEEEEEETTE--EEEEEEESSCCEE
T ss_pred             CCCceEEEec---CCCCEEEEEEECCE--EEEEEEcCCCeEE
Confidence            9999999985   46899999999999  9999999998764

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=99.52  E-value=5.6e-15  Score=125.10  Aligned_cols=149  Identities=15%  Similarity=0.149  Sum_probs=102.2

Q ss_pred             Ccee-cCCCCccCCCCcceeec--------------CC--c----cCCCCceeeCCCCCCCCcccccCC----CCCCC--
Q psy2060          24 PYLS-GLPDNEGLEKRVQTFVD--------------GG--H----RTLDLLHDMGARYHWGDTCETDIT----KSDCK--   76 (193)
Q Consensus        24 ~~~c-C~~g~~g~~~~c~~~~~--------------gg--~----~~~~~~~C~C~~g~~G~~C~~~~~----~~~C~--   76 (193)
                      .+.| |++||+|..  |+...+              .+  .    -..+.|.|.|++||+|.+|+..-.    ...|.  
T Consensus       215 ~g~C~C~~G~~G~~--Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C~~~~~~C~C~~G~~G~~C~~~C~~G~~G~~C~~~  292 (423)
T 2gy5_A          215 TGECICPPGFMGRT--CEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLR  292 (423)
T ss_dssp             TCCEECCTTEESTT--SCEECCTTEESTTSCEECCSTTTTTTCCEEETTTTEEECCBTCBSGGGCBCCCTTBCSBTTCCB
T ss_pred             CCcEeCCCCccCCC--cccccCCCCCCCCcCccCCCCCCCCCCCEECCCCCeEEeCCCcccccccCccCCCCcCCccccc
Confidence            5789 999999998  986321              11  1    134689999999999999986211    12455  


Q ss_pred             CCCCCCcEEeeCCCCceecccCCCCCCccccccccceec-----ccCC-CcceEEecC-----------CCCCceeEEEE
Q psy2060          77 GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRA-----RSFP-KNSFLTFPA-----------LKQRNRLHIKL  139 (193)
Q Consensus        77 ~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~~-----~sF~-g~syl~~~~-----------~~~~~~~~i~~  139 (193)
                      -+|.++++|.+..    .|. |+++|.    |..|+...     +.|. ..+++.+..           .....  .+++
T Consensus       293 C~C~ngg~C~~~~----~C~-C~~G~~----G~~Ce~~~~~~~~~~~~~~~~~~~c~~g~~g~~C~~~~~~~~~--~~~~  361 (423)
T 2gy5_A          293 CSCNNGEMCDRFQ----GCL-CSPGWQ----GLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPT--NEEM  361 (423)
T ss_dssp             CCCTTCCEEETTT----EEE-CCTTCB----STTSCBCSSCCCCCEECSCCSBCCEESEEECCEEEEECTTCCC--GGGE
T ss_pred             ccCCCCCEecCCC----ceE-CCCCCc----CCCCccCccCCcCcceecCCCeEEeCCCccCCcccccCCcCCC--CceE
Confidence            3899999998553    499 999999    99998752     2221 223332211           00111  1122


Q ss_pred             EEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEcC
Q psy2060         140 QFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRA  190 (193)
Q Consensus       140 ~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s~  190 (193)
                      .|  ..++|+++|.+. ....||++|+|.+|+  ++++|++|+.+..+++.
T Consensus       362 ~~--~~~~G~cl~~~~-~~~~d~ial~l~~G~--v~~syd~G~~~~~v~t~  407 (423)
T 2gy5_A          362 TL--VKPDGTVLHPKD-FNHTDHFSVAIFTIH--RILPPDSGVWVCSVNTV  407 (423)
T ss_dssp             EE--ECTTSCEECCSE-EEECSSCEEEECCEE--EECGGGCEEEEEEEEET
T ss_pred             EE--ECCCeEEEeCCC-cCcccceeeeEEeee--EEEeecCCCcceEEEec
Confidence            22  478999999854 235799999999999  99999999888877764

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.51  E-value=1.1e-14  Score=98.02  Aligned_cols=80  Identities=15%  Similarity=0.289  Sum_probs=65.1

Q ss_pred             Ccee-cCCCCccCCCCcceeec-CC--ccCCCCceeeCCCCCCCCccc-ccCCCCCCC-CCCCCCcEEeeCC-CCceecc
Q psy2060          24 PYLS-GLPDNEGLEKRVQTFVD-GG--HRTLDLLHDMGARYHWGDTCE-TDITKSDCK-GVCSPGATCSLNP-SGGYICD   96 (193)
Q Consensus        24 ~~~c-C~~g~~g~~~~c~~~~~-gg--~~~~~~~~C~C~~g~~G~~C~-~~~~~~~C~-~pC~~gg~C~~~~-~~~~~C~   96 (193)
                      .|.| |++||+|..  |+++.- ..  .+..++|.|.|++||+  .|+ .+++  +|. +||.|+|+|++.. .++|+|.
T Consensus         1 sy~C~C~~g~~g~~--c~~~~c~~~pC~n~~~~y~C~C~~G~~--~C~~~~~~--~C~~~pC~ngg~C~~~~~~~~~~C~   74 (91)
T 1tpg_A            1 SYQVICRDEKTQMI--YQQHQSWLRPVLRSNRVEYCWCNSGRA--QCHSVPVK--SCSEPRCFNGGTCQQALYFSDFVCQ   74 (91)
T ss_dssp             CCCCCCBCSSSCCB--CCSSCEEEEECSSSSCEEEEECSSSCC--BCCEECEE--ECSSCCSCTTCEEEEESSSSCEEEE
T ss_pred             CeeeECCCCCcCCe--ECCCcccCCccccCCCCcEeECCCCCc--ccccCcCC--cccCCCCCCCCEeecCCCCCCeEeE
Confidence            4788 999999997  854321 11  5667899999999998  998 4655  999 9999999999863 3889999


Q ss_pred             cCCCCCCcccccccccee
Q psy2060          97 DCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        97 ~C~~g~~~~~~g~~C~~~  114 (193)
                       |++||.    |..|+..
T Consensus        75 -C~~G~~----G~~Ce~~   87 (91)
T 1tpg_A           75 -CPEGFA----GKSCEID   87 (91)
T ss_dssp             -CCTTCB----SSSCCBC
T ss_pred             -CCCCCc----CCcCCcC
Confidence             999998    9999854

>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A

Probab=99.43  E-value=3.9e-13  Score=103.15  Aligned_cols=83  Identities=27%  Similarity=0.399  Sum_probs=69.9

Q ss_pred             ccccceecccCCCcceEEecCCC----------------CCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCe
Q psy2060         108 DRLCRLRARSFPKNSFLTFPALK----------------QRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSG  171 (193)
Q Consensus       108 g~~C~~~~~sF~g~syl~~~~~~----------------~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~  171 (193)
                      ++.|+....+|.|.+|+.|+...                .....+|+|+|||..++|+|||++......||++|+|.+|+
T Consensus         7 ~~~~~~~~~~F~G~sy~~~~~~~~~~~~~l~~~~~~~~~~~~~~~is~~frT~~~~GlLl~~g~~~~~~dfl~l~L~~G~   86 (204)
T 1pz7_A            7 KAAGDAEAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGLERSDYIALAIVDGF   86 (204)
T ss_dssp             CTTSSSCCEEEESSCCEEEECCSCCC-------CCSSCEEESEEEEEEEEEECCSSEEEEEESCCSTTCCEEEEEEETTE
T ss_pred             cccccccceeECCceeEEEcCcccccccccccccccccccceeEEEEEEEEcCCCCeEEEEeCCCCCCCCeEEEEEECCE
Confidence            78899989999999999997542                12467899999999999999999642246799999999999


Q ss_pred             eEEEEEEeCCCceEEEEcCCC
Q psy2060         172 RSVQFSWSLGSEVARLNRADS  192 (193)
Q Consensus       172 ~~l~~~~~~g~g~~~l~s~~~  192 (193)
                        |+++|++|+++.+|+++..
T Consensus        87 --l~~~~~~G~g~~~v~s~~~  105 (204)
T 1pz7_A           87 --VQMMYDLGSKPVVLRSTVP  105 (204)
T ss_dssp             --EEEEEESSSCCEEEEEEEE
T ss_pred             --EEEEEECCCCeEEEECCcc
Confidence              9999999999888876543

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*

Probab=99.41  E-value=1.6e-13  Score=116.09  Aligned_cols=112  Identities=14%  Similarity=0.177  Sum_probs=76.7

Q ss_pred             ceeeCCCCCCCCcccccCCCCCCC-CCCCCCcEEeeCCCCceecccCCCC-CCccccccccceecccCCCcceEEecCCC
Q psy2060          53 LHDMGARYHWGDTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLA-GSYEHYDRLCRLRARSFPKNSFLTFPALK  130 (193)
Q Consensus        53 ~~C~C~~g~~G~~C~~~~~~~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g-~~~~~~g~~C~~~~~sF~g~syl~~~~~~  130 (193)
                      ..|.| +|++|..|+       |. ++|.++..|++.. .   .. |+.. |.           ..+|.+.+|+.++...
T Consensus         2 ~~C~C-~~~~g~~~~-------~~~~~C~~~~~C~p~~-~---~~-~~~~~~~-----------~~~F~g~~~~~~~f~~   57 (422)
T 1h30_A            2 PLAHC-DGRGGLKLS-------QDMDTCEDILPCVPFS-V---AK-SVKSLYL-----------GRMFSGTPVIRLRFKR   57 (422)
T ss_dssp             ---CC-CGGGTEEEE-------TTTTEEEECCCSSCBC-C---CE-ETTEEEC-----------CC-----CCEEEECCB
T ss_pred             CeeEc-CCCCccccc-------cccCcCCCCCccCCcc-c---cc-Cccccee-----------eeEECCCceEEEEccC
Confidence            36999 789998774       44 6777777777654 2   22 3232 11           2578888787764322


Q ss_pred             C-CceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEcCC
Q psy2060         131 Q-RNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRAD  191 (193)
Q Consensus       131 ~-~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s~~  191 (193)
                      . ....+|+|+|||..++|+|||.+. ....||++|+|.+|+  |+++|++|++...+.++.
T Consensus        58 ~~~~~~~is~~FrT~~~~GlLly~~~-~~~~df~~l~L~~G~--l~~~~~~g~~~~~~~~~~  116 (422)
T 1h30_A           58 LQPTRLVAEFDFRTFDPEGILLFAGG-HQDSTWIVLALRAGR--LELQLRYNGVGRVTSSGP  116 (422)
T ss_dssp             SSCCCCEEEEEEEECCSSEEEEEEES-CTTSEEEEEEEETTE--EEEEEEETTEEEEEEEEE
T ss_pred             CCCCceEEEEEEEeCCCCeEEEEECC-CCCCcEEEEEEECCE--EEEEEECCCCcEEEecCc
Confidence            2 456789999999999999999974 345799999999999  999999999887776543

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=99.40  E-value=2.4e-12  Score=121.66  Aligned_cols=115  Identities=21%  Similarity=0.427  Sum_probs=89.3

Q ss_pred             cccccCCCCCCC-CCCCCCcEEeeCCCCceecccCC-CCCCccccccccceecc--cC-CCcceEEecCCCC----Ccee
Q psy2060          65 TCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCS-LAGSYEHYDRLCRLRAR--SF-PKNSFLTFPALKQ----RNRL  135 (193)
Q Consensus        65 ~C~~~~~~~~C~-~pC~~gg~C~~~~~~~~~C~~C~-~g~~~~~~g~~C~~~~~--sF-~g~syl~~~~~~~----~~~~  135 (193)
                      .|....+  .|. +||.|+|+|++.+ .+|.|. |+ .+|.    |+.|+....  .| .+.+++.|.....    ....
T Consensus      1012 gC~~~~~--~C~~~pC~ngG~C~~~~-~~~~C~-C~~~g~~----G~~C~~~~~~~~f~~~~~~v~y~~~~~~~~~~~~~ 1083 (1245)
T 3qcw_A         1012 GCEGPST--TCQEDSCSNQGVCLQQW-DGFSCD-CSMTSFS----GPLCNDPGTTYIFSKGGGQITYKWPPNDRPSTRAD 1083 (1245)
T ss_dssp             SSSCCCC--CCCTTSSSSSCEEEEET-TEEEEE-CTTSSCB----STTSCBCCCEEEEEEEEEEEEEECCTTCCCCBSEE
T ss_pred             eeecccC--ceECCcCCCCCEeCCCC-CCCEEE-CCCCCCC----CCCccCCCceEEEcCCCcEEEEecCCCCccccccc
Confidence            4554433  899 9999999999998 999999 99 5888    999987543  24 3457777642211    2235


Q ss_pred             EEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEc
Q psy2060         136 HIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNR  189 (193)
Q Consensus       136 ~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s  189 (193)
                      .|+|.|+|+.++|+||+.+......||++|+|.+|+  |+++|++|++...+..
T Consensus      1084 ~i~l~FrT~~~~g~Ll~~~s~~~~~~~l~l~l~~G~--l~~~~~~g~~~~~~~~ 1135 (1245)
T 3qcw_A         1084 RLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGK--IGVKFNVGTDDIAIEE 1135 (1245)
T ss_dssp             EEEEEEEBCCSSEEEEEEEECTTCCCEEEEEEETTE--EEEEEESSSCCEEEEC
T ss_pred             eEEEEEEEcCCCeEEEEEeccCCCCceEEEEEECCE--EEEEEECCCCceEEec
Confidence            799999999999999998642334799999999999  9999999988776653

>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}

Probab=99.30  E-value=1.5e-11  Score=93.19  Aligned_cols=78  Identities=28%  Similarity=0.539  Sum_probs=64.8

Q ss_pred             ecccCCCcceEEecCCCC-----CceeEEEEEEEeCCCCeEEEEeecC-CCCCceEEEEecCCeeEEEEEEeCCCceEEE
Q psy2060         114 RARSFPKNSFLTFPALKQ-----RNRLHIKLQFSTLHDSGLLLYNGRY-NERHDFIALELTDSGRSVQFSWSLGSEVARL  187 (193)
Q Consensus       114 ~~~sF~g~syl~~~~~~~-----~~~~~i~~~f~T~~~~glLl~~g~~-~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l  187 (193)
                      .+++|.+.+|++++....     .....|+|+|||..++|+|||.+.. ....||++|+|.+|+  |+++|++|+++.++
T Consensus        10 ~~~~F~g~syl~~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~~~~~~d~l~l~L~~G~--l~~~~~~G~g~~~l   87 (189)
T 3pve_A           10 FLADFNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGDFVSLALHNRH--LEFRYDLGKGAAII   87 (189)
T ss_dssp             CCEEEESSCEEEECCGGGC-------CEEEEEEEESSSCEEEEEEESCC-CCSCEEEEEEETTE--EEEEEESSSCEEEE
T ss_pred             eeeEECCCceEEEcCcccccccccceEEEEEEEEeCCCCEEEEEecCCCCCCCCeEEEEEECCE--EEEEEecCCCCEEE
Confidence            357899999999997753     3457899999999999999999741 246799999999999  99999999999999


Q ss_pred             EcCCCC
Q psy2060         188 NRADSI  193 (193)
Q Consensus       188 ~s~~~i  193 (193)
                      +++.+|
T Consensus        88 ~s~~~l   93 (189)
T 3pve_A           88 RSKEPI   93 (189)
T ss_dssp             ECSSCC
T ss_pred             EcCccc
Confidence            887654

>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A

Probab=99.26  E-value=1.4e-11  Score=93.56  Aligned_cols=76  Identities=26%  Similarity=0.464  Sum_probs=63.2

Q ss_pred             cccCCCcceEEecCCC-------------CCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCC
Q psy2060         115 ARSFPKNSFLTFPALK-------------QRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG  181 (193)
Q Consensus       115 ~~sF~g~syl~~~~~~-------------~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g  181 (193)
                      ..+|.|.+|+.|+...             .....+|+|+|+|..++|+|||.+......||++|+|.+|+  |+++|++|
T Consensus         4 ~~~F~G~sy~~y~~~~~~~~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~~~~~d~l~l~L~~G~--l~~~~~~G   81 (191)
T 3v64_A            4 TLAFDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAAERADYMALAIVDGH--LQLSYDLG   81 (191)
T ss_dssp             EEEEESSCCEEEECSCCCHHHHCCCCCCEEESEEEEEEEEECSCSSEEEEEESCCSTTCCEEEEEEETTE--EEEEEESS
T ss_pred             cceecCceeEEEccccccccccccccccccccceEEEEEEEeCCCCeEEEEeCCCCCCCcEEEEEEECCE--EEEEEECC
Confidence            4679999999997531             24557899999999999999999642346799999999999  99999999


Q ss_pred             CceEEEEcCCC
Q psy2060         182 SEVARLNRADS  192 (193)
Q Consensus       182 ~g~~~l~s~~~  192 (193)
                      +++.+++++.+
T Consensus        82 ~~~~~l~s~~~   92 (191)
T 3v64_A           82 SQPVVLRSTVK   92 (191)
T ss_dssp             SCCEEEEEEEE
T ss_pred             CccEEEecCcc
Confidence            99888887543

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.23  E-value=3.9e-12  Score=94.88  Aligned_cols=80  Identities=23%  Similarity=0.373  Sum_probs=65.5

Q ss_pred             Ccee-cCCCCccCCCCcceeecCC----ccCCCCceeeCCCCCCCCcccccCCCCCCC--CCCCCCcEEeeC-CCCceec
Q psy2060          24 PYLS-GLPDNEGLEKRVQTFVDGG----HRTLDLLHDMGARYHWGDTCETDITKSDCK--GVCSPGATCSLN-PSGGYIC   95 (193)
Q Consensus        24 ~~~c-C~~g~~g~~~~c~~~~~gg----~~~~~~~~C~C~~g~~G~~C~~~~~~~~C~--~pC~~gg~C~~~-~~~~~~C   95 (193)
                      +|.| |++||+|..  |+.+....    ..-.+.|.|.|++||+|..|+.+++  +|.  .||.++|+|++. . ++|+|
T Consensus        82 ~~~C~C~~G~~G~~--C~~C~~~~~C~~g~C~~~~~C~C~~G~~G~~C~~~~~--~C~~~~~C~~~g~C~~~~~-~~~~C  156 (169)
T 2vj2_A           82 PGDCRCQYGWQGLY--CDKCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLN--YCGTHQPCLNGGTCSNTGP-DKYQC  156 (169)
T ss_dssp             TTCCEECTTEESSS--SCEECCCTTCSSEECSSTTCCEECTTEETTTTCEESC--HHHHTCCCCTTCEEEECST-TCEEE
T ss_pred             CCeeECCCCCCCCC--cccCCCCCCCCCCCcCCCCEEeCCCCCCCCcccCCCC--CCCCCCCCCCCCEEcCCCC-CCcEe
Confidence            5778 999999987  88754311    0112579999999999999997765  897  899999999986 5 89999


Q ss_pred             ccCCCCCCccccccccce
Q psy2060          96 DDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        96 ~~C~~g~~~~~~g~~C~~  113 (193)
                      . |++||.    |..|++
T Consensus       157 ~-C~~G~~----G~~Ce~  169 (169)
T 2vj2_A          157 S-CPEGYS----GPNCEI  169 (169)
T ss_dssp             E-CCTTCC----STTSCC
T ss_pred             E-CCCCCc----CcCcCC
Confidence            9 999999    888863

>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}

Probab=99.23  E-value=3e-11  Score=90.99  Aligned_cols=77  Identities=18%  Similarity=0.314  Sum_probs=63.6

Q ss_pred             ecccCCCcceEEecC--CCCCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEcCC
Q psy2060         114 RARSFPKNSFLTFPA--LKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRAD  191 (193)
Q Consensus       114 ~~~sF~g~syl~~~~--~~~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s~~  191 (193)
                      ...+|.|.+|+.+..  ........|+|+|||..++|+|||.+. ....||++|+|.+|+  |+++|++|++..+++++.
T Consensus         6 ~~~~F~G~sy~~~~~~~~~~~~~~~isl~FrT~~~~GlLl~~~~-~~~~d~l~L~L~~G~--l~~~~~~G~~~~~~~~~~   82 (182)
T 2r16_A            6 TVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTS-RDSADTLRLELDAGR--VKLTVNLGKGPETLFAGY   82 (182)
T ss_dssp             CEEEEESSCCEEEEEEEEEEESEEEEEEEEECSCSSEEEEEEEC-SSSCCEEEEEEETTE--EEEEEESSSCCEEEEECS
T ss_pred             ccEEECCCceEEEECCCcCCccceEEEEEEEECCCCEEEEEeCC-CCCCCEEEEEEECCE--EEEEEECCCCceEEEcCc
Confidence            357899999988642  233456789999999999999999874 356799999999999  999999999988888766


Q ss_pred             CC
Q psy2060         192 SI  193 (193)
Q Consensus       192 ~i  193 (193)
                      .|
T Consensus        83 ~l   84 (182)
T 2r16_A           83 NL   84 (182)
T ss_dssp             SC
T ss_pred             cc
Confidence            53

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.23  E-value=3.6e-12  Score=92.38  Aligned_cols=82  Identities=16%  Similarity=0.206  Sum_probs=63.2

Q ss_pred             cee-cCCCCccCC-------CCcceeec------------CC--ccCCCCceeeCCCCCCCC------------cccccC
Q psy2060          25 YLS-GLPDNEGLE-------KRVQTFVD------------GG--HRTLDLLHDMGARYHWGD------------TCETDI   70 (193)
Q Consensus        25 ~~c-C~~g~~g~~-------~~c~~~~~------------gg--~~~~~~~~C~C~~g~~G~------------~C~~~~   70 (193)
                      |.| |++||+|..       +.|+ ++|            ++  .++.++|.|.|++||+|.            .|+ ++
T Consensus        19 ~~C~C~~G~~g~~~~~~~~~~~C~-dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~~~~~~~~~C~-di   96 (143)
T 2bou_A           19 TACRCNPGFSSFSEIITTPMETCD-DINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQ-DV   96 (143)
T ss_dssp             SCEEECTTEECSSSSBCSTTCCCE-ECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCCSCBSSGGGCCEE-EC
T ss_pred             CEEeCCCCCcCccccccCCCCcCC-ccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCccccccCCCCCcC-Cc
Confidence            789 999999841       2363 333            23  678899999999999987            554 44


Q ss_pred             CCCCCC---CCCCCCcEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          71 TKSDCK---GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        71 ~~~~C~---~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      +  +|.   ++|.++++|++.. ++|+|. |++||.+...+..|+
T Consensus        97 d--eC~~~~~~C~~~~~C~n~~-g~y~C~-C~~Gy~g~~~~~~C~  137 (143)
T 2bou_A           97 D--ECSSGQHQCDSSTVCFNTV-GSYSCR-CRPGWKPRHGIPNNQ  137 (143)
T ss_dssp             C--HHHHTCCCCCTTSEEEECS-SCEEEE-CCSSSCBCTTCCSSB
T ss_pred             c--CccCcCCCCCCCCEEECCC-CCEEee-CCCCcccCCCCccCc
Confidence            4  887   7999999999998 999999 999999544444443

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.19  E-value=3.8e-12  Score=96.23  Aligned_cols=84  Identities=15%  Similarity=0.117  Sum_probs=67.0

Q ss_pred             CCcee-cCCCCccCCCCccee-------ecCC--c----cCCCCceeeCCCCCCC-----Cccccc-CCCCCCCCCC-CC
Q psy2060          23 QPYLS-GLPDNEGLEKRVQTF-------VDGG--H----RTLDLLHDMGARYHWG-----DTCETD-ITKSDCKGVC-SP   81 (193)
Q Consensus        23 ~~~~c-C~~g~~g~~~~c~~~-------~~gg--~----~~~~~~~C~C~~g~~G-----~~C~~~-~~~~~C~~pC-~~   81 (193)
                      +.|.| |++||+|....|+++       .++|  .    ++.++|+|.|++||+|     ..|+.. ++  +|..+| .+
T Consensus        72 g~y~C~C~~G~~g~~~~C~~d~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~--~C~~~C~~~  149 (186)
T 1z1y_A           72 NMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGET--ACQLXCNTD  149 (186)
T ss_dssp             CSEEEEECTTEEEETTEEEEGGGTTCCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEEECC--CCCCCCCTT
T ss_pred             CCEECCCCCCCccCCCCCCCCcCcCCCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEcCCC--ccccccccc
Confidence            68999 999999986224311       1134  4    7778999999999998     889864 34  888899 99


Q ss_pred             CcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          82 GATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        82 gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      +++|++.. ++|+|. |++||.    |..|+..
T Consensus       150 ~~~C~n~~-g~y~C~-C~~G~~----g~~~~~~  176 (186)
T 1z1y_A          150 NEVCXNVE-GVYXCQ-CMEGFT----FDXEXNV  176 (186)
T ss_dssp             TEEEEEET-TEEEEE-ECTTCE----EETTTTE
T ss_pred             CcceecCC-CCeeeE-CCCCCc----cCccccc
Confidence            99999988 999999 999998    7777654

>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*

Probab=99.17  E-value=1.8e-10  Score=85.78  Aligned_cols=74  Identities=15%  Similarity=0.249  Sum_probs=59.3

Q ss_pred             ccCCCcc--eEEecCCCCCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEcCCCC
Q psy2060         116 RSFPKNS--FLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRADSI  193 (193)
Q Consensus       116 ~sF~g~s--yl~~~~~~~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s~~~i  193 (193)
                      ..|.+.+  |+.|+..+. ...+|+|+|||..++|+|||.+. ....||++|+|.+|+  |+++|+.|++.+++.+...|
T Consensus         8 ~~F~g~s~~~l~f~~~~~-~~~~is~~FrT~~~~GlLly~~~-~~~~df~~l~L~~G~--l~~~~~~g~~~~~~~s~~~v   83 (170)
T 1d2s_A            8 NGPGQEPIAVMTFDLTKI-TKTSSSFEVRTWDPEGVIFYGDT-NPKDDWFMLGLRDGR--PEIQLHNHWAQLTVGAGPRL   83 (170)
T ss_dssp             CTTCCSCSEEEEEEGGGC-CCCEEEEEEEESCSSEEEEEEEE-ETTTEEEEEEEETTE--EEEEEESSSCEEEEECSCCC
T ss_pred             cCCCCCceEEEEecCCCC-CceEEEEEEEeCCCCEEEEEecC-CCCCCEEEEEEeCCE--EEEEEECCCceEEEeCCCcc
Confidence            3566655  577765544 44689999999999999999974 335799999999999  99999999998888766543

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A

Probab=99.16  E-value=1.3e-10  Score=88.38  Aligned_cols=75  Identities=37%  Similarity=0.554  Sum_probs=62.1

Q ss_pred             ccCCCcceEEecCCCC-----CceeEEEEEEEeCCCCeEEEEeec----CCCCCceEEEEecCCeeEEEEEEeCCCceEE
Q psy2060         116 RSFPKNSFLTFPALKQ-----RNRLHIKLQFSTLHDSGLLLYNGR----YNERHDFIALELTDSGRSVQFSWSLGSEVAR  186 (193)
Q Consensus       116 ~sF~g~syl~~~~~~~-----~~~~~i~~~f~T~~~~glLl~~g~----~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~  186 (193)
                      ..|.+++|+.++....     .....|+|+|||..++|+|||.+.    .....||++|+|.+|+  |+++|++|++..+
T Consensus         8 ~~F~G~syl~lp~~~~~~~~~~~~~~is~~frT~~~~GlLl~~~~~~~~~~~~~d~l~l~L~~G~--l~~~~~~G~g~~~   85 (195)
T 3sh4_A            8 AYFHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGH--LVFRYQLGSGEAR   85 (195)
T ss_dssp             EEEEEEEEEEECGGGGCCCSTTCCEEEEEEEEECCSSEEEEEECCCTTCTTSTTCEEEEEEETTE--EEEEEECSSCEEE
T ss_pred             CEECCCEEEEEccccccccccccceEEEEEEEeCCCCcEEEEecccccCCCCCCcEEEEEEeCCE--EEEEEECCCCcEE
Confidence            5788999999986521     234789999999999999999863    1245799999999999  9999999999888


Q ss_pred             EEcCCC
Q psy2060         187 LNRADS  192 (193)
Q Consensus       187 l~s~~~  192 (193)
                      ++++.+
T Consensus        86 ~~s~~~   91 (195)
T 3sh4_A           86 LVSEDP   91 (195)
T ss_dssp             EEEEEE
T ss_pred             EEcCce
Confidence            887644

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=99.14  E-value=2.9e-10  Score=95.70  Aligned_cols=70  Identities=29%  Similarity=0.582  Sum_probs=62.3

Q ss_pred             cccCC-CcceEEecCCCCCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEE
Q psy2060         115 ARSFP-KNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLN  188 (193)
Q Consensus       115 ~~sF~-g~syl~~~~~~~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~  188 (193)
                      ..+|. +.||++++.++.....+|+|+|||..++|+|||++  ....||++|+|.+|+  |+++|++|+++.+++
T Consensus         7 ~v~F~~~~Syl~~p~~~~~~~~~is~~frT~~~~GlLly~~--~~~~dfi~l~L~~G~--l~~~~~~G~g~~~~~   77 (410)
T 3asi_A            7 PVTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNS--GDGNDFIVVELVKGY--LHYVFDLGNGANLIK   77 (410)
T ss_dssp             CEEECSTTCEEEESCCCCSSCEEEEEEEECSCSCEEEEEEE--BSTTCEEEEEEETTE--EEEEEESSSCEEEEE
T ss_pred             ccEeCCCCeeEEeCCCCCCceEEEEEEEEeCCCCeEEEEeC--CCCCCEEEEEEECCE--EEEEEECCCCcEEEE
Confidence            35785 68999999888777889999999999999999986  346799999999999  999999999998886

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=99.13  E-value=2e-11  Score=85.80  Aligned_cols=81  Identities=20%  Similarity=0.311  Sum_probs=60.9

Q ss_pred             ccCCCCCCcee-cCCCCccCCC---Ccce-eecC---C--ccCCCCceeeCCCCCC---CCcccccCCCCCCC--CCCCC
Q psy2060          17 LTNGPFQPYLS-GLPDNEGLEK---RVQT-FVDG---G--HRTLDLLHDMGARYHW---GDTCETDITKSDCK--GVCSP   81 (193)
Q Consensus        17 ~~~~~~~~~~c-C~~g~~g~~~---~c~~-~~~g---g--~~~~~~~~C~C~~g~~---G~~C~~~~~~~~C~--~pC~~   81 (193)
                      ..|...+.|.| |++||+|...   .|.. +.++   +  .+ .++|.|.|++||+   |..|+ +++  +|.  +||  
T Consensus        16 C~~~~~g~y~C~C~~Gy~g~~~~~~~C~~~C~~~~C~~~C~~-~~~y~C~C~~Gy~~~~g~~C~-did--eC~~~~~C--   89 (118)
T 1dx5_I           16 CQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDP-NTQASCECPEGYILDDGFICT-DID--ECENGGFC--   89 (118)
T ss_dssp             EEECSSSCEEEECCTTEEEETTEEEEEEECCCSSEEECEECT-TSTTCEECCTTEEEETTTEEE-ECC--HHHHCSSC--
T ss_pred             CCCCCCCCEEeECCCCccccCCCCCccccccCCCCCCCcccC-CCCeEeECCCCccCCCCCccc-ccc--ccCCCCCC--
Confidence            44553467999 9999999841   1221 0122   2  44 4789999999999   89995 555  998  899  


Q ss_pred             CcEEeeCCCCceecccCCCCCCcc
Q psy2060          82 GATCSLNPSGGYICDDCSLAGSYE  105 (193)
Q Consensus        82 gg~C~~~~~~~~~C~~C~~g~~~~  105 (193)
                      +++|++.. ++|+|. |++||.+.
T Consensus        90 ~~~C~n~~-g~y~C~-C~~G~~g~  111 (118)
T 1dx5_I           90 SGVCHNLP-GTFECI-CGPDSALA  111 (118)
T ss_dssp             SSEEEECS-SSEEEE-ECSSSSCE
T ss_pred             cCeEEeCC-CCEEEE-CCCCCccC
Confidence            68999998 999999 99999843

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.12  E-value=4.6e-11  Score=85.76  Aligned_cols=60  Identities=25%  Similarity=0.444  Sum_probs=54.8

Q ss_pred             ccCCCCceeeCCCCCCCCcccccCCCCCCC-CCCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          47 HRTLDLLHDMGARYHWGDTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~G~~C~~~~~~~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      .+..++|+|.|++||+|..|+.+++  +|. .||.++++|++.. ++|+|. |++||.    |..|+..
T Consensus        22 ~~~~g~~~C~C~~Gy~G~~C~~~~~--~C~~~~C~~~~~C~~~~-g~~~C~-C~~G~~----G~~C~~~   82 (135)
T 2vj3_A           22 INTLGSFECQCLQGYTGPRCEIDVN--ECVSNPCQNDATCLDQI-GEFQCI-CMPGYE----GVHCEVN   82 (135)
T ss_dssp             EECSSSEEEECCTTEESTTSCEECC--TTTTCCCCSSCEEEECS-SCEEEE-CCTTEE----SSSSCEE
T ss_pred             ECCCCCEEEECCCCCcCCcccccCc--cCCCCCCCCCCEEeCCC-CCceee-CCCCCc----CCcceec
Confidence            6778899999999999999998876  999 9999999999987 999999 999998    8899753

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.11  E-value=6.5e-12  Score=94.92  Aligned_cols=88  Identities=9%  Similarity=0.092  Sum_probs=65.1

Q ss_pred             CCcee-cCCCCccCC-CCcce------------eecCC--ccCC-----CCceeeCCCCCCCCcccccCCCCCCC-CCCC
Q psy2060          23 QPYLS-GLPDNEGLE-KRVQT------------FVDGG--HRTL-----DLLHDMGARYHWGDTCETDITKSDCK-GVCS   80 (193)
Q Consensus        23 ~~~~c-C~~g~~g~~-~~c~~------------~~~gg--~~~~-----~~~~C~C~~g~~G~~C~~~~~~~~C~-~pC~   80 (193)
                      +.|.| |++||+|.. +.|+.            +.++|  .++.     ++|+|.|++||+|..|+-.++  +|. .||.
T Consensus        23 g~~~C~C~~G~~g~~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~~~C~~d--~C~~~~C~  100 (186)
T 1z1y_A           23 NHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLD--VCQYXNCG  100 (186)
T ss_dssp             SCEEEEECTTEEEEETTEEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEETTEEEEG--GGTTCCCC
T ss_pred             CCeEeECCCCCccCCCCccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCCCCCCCC--cCcCCCCC
Confidence            46899 999999871 12641            12234  5666     899999999999986544444  999 9999


Q ss_pred             CCcEEe----eCCCCceecccCCCCCCccc-ccccccee
Q psy2060          81 PGATCS----LNPSGGYICDDCSLAGSYEH-YDRLCRLR  114 (193)
Q Consensus        81 ~gg~C~----~~~~~~~~C~~C~~g~~~~~-~g~~C~~~  114 (193)
                      ++++|+    +.. ++|+|. |++||.+.. .+..|+..
T Consensus       101 ~~g~C~~~~~~~~-g~~~C~-C~~Gy~g~~~~~~~C~~~  137 (186)
T 1z1y_A          101 ESGECIVEYLSEI-QSAGCS-CAIGXVPNPEDEXXCTXT  137 (186)
T ss_dssp             TTEEEEEEEETTE-EEEEEE-ECTEEEEETTTTTEEEEE
T ss_pred             CCCEEeeCCcCCC-CCceEE-CCCCCcccCCCCCcceEc
Confidence            999999    555 899999 999998311 13788754

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=99.10  E-value=1.9e-11  Score=88.96  Aligned_cols=53  Identities=26%  Similarity=0.676  Sum_probs=44.1

Q ss_pred             ceeeCCCCCC---CCcccccCCCCCCC-CC--CCCCcEEeeCCCCceecccCCCCCCcccccccc
Q psy2060          53 LHDMGARYHW---GDTCETDITKSDCK-GV--CSPGATCSLNPSGGYICDDCSLAGSYEHYDRLC  111 (193)
Q Consensus        53 ~~C~C~~g~~---G~~C~~~~~~~~C~-~p--C~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C  111 (193)
                      |.|.|++||+   |..|+ +++  +|. .|  |.++ +|++.. ++|+|. |++||.+...++.|
T Consensus        88 ~~C~C~~Gy~~~~g~~C~-did--eC~~~~~~C~~g-~C~n~~-g~y~C~-C~~Gy~g~~~~~~C  146 (147)
T 2w86_A           88 VDPICGKGYSRIKGTQCE-DID--ECEVFPGVCKNG-LCVNTR-GSFKCQ-CPSGMTLDATGRIC  146 (147)
T ss_dssp             CCTTTCTTEEEEETTEEE-ECC--HHHHSTTCSSSS-EEEEET-TEEEEE-CCTTCCBCTTSSCB
T ss_pred             CcccCCCccccCCCCccC-ccc--cccCCCCCCCCC-EEECCC-CCEEee-CCCCCccCCCCCee
Confidence            7889999995   99998 665  998 55  9975 999998 999999 99999865555555

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.08  E-value=9.1e-11  Score=103.26  Aligned_cols=92  Identities=16%  Similarity=0.174  Sum_probs=70.1

Q ss_pred             eccCCCCCCcee--cCCCCccCCCCcceeec-----------CC-----ccCCCCceee-CCCCCCCCccc---------
Q psy2060          16 DLTNGPFQPYLS--GLPDNEGLEKRVQTFVD-----------GG-----HRTLDLLHDM-GARYHWGDTCE---------   67 (193)
Q Consensus        16 ~~~~~~~~~~~c--C~~g~~g~~~~c~~~~~-----------gg-----~~~~~~~~C~-C~~g~~G~~C~---------   67 (193)
                      .+.|.+.+.|.|  |++||+|..+.|+ ++|           ++     .++.++|+|. |++||+|..|+         
T Consensus        16 ~C~n~~~Gsy~C~~C~~GytGdg~~Ce-DiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~c~g~g~~~~~~   94 (634)
T 1yo8_A           16 QCSSFPDGSWSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKT   94 (634)
T ss_dssp             CEEECTTSCEEECCCCTTBCSCSSSCC-BCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEECCCEESSSHHHHS
T ss_pred             EEecCCCCCeECCcCCCccCCCCCCcc-ccccccCCCCcccCCccccceeeccCceecccCCCCcccCcccccccccccc
Confidence            345665566888  9999999554586 333           21     4677899998 99999998865         


Q ss_pred             -----ccCCCCCCC---CCCCCCcEEeeCC---CCceecccCCCCCCccccccccce
Q psy2060          68 -----TDITKSDCK---GVCSPGATCSLNP---SGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        68 -----~~~~~~~C~---~pC~~gg~C~~~~---~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                           ..++  +|.   ++|.++++|++..   .++|+|. |++||.+.  |..|+.
T Consensus        95 dg~~C~did--eC~~~~~pC~~~~~Cvnt~~~~~GsY~C~-C~~Gy~Gd--G~~Ce~  146 (634)
T 1yo8_A           95 EKQVCEPEN--PCKDKTHNCHKHAECIYLGHFSDPMYKCE-CQTGYAGD--GLICGE  146 (634)
T ss_dssp             CCCCEEECC--TTTTTCCCCCTTEEEEECCTTCSSSEEEE-ECTTEEES--SSSEEE
T ss_pred             CCCcccccc--cccCCCcccccCccccccccccccceeee-ccCCcccc--Cccccc
Confidence                 3444  998   5999999999874   2799999 99999843  478874

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=99.06  E-value=6.7e-11  Score=71.55  Aligned_cols=45  Identities=22%  Similarity=0.533  Sum_probs=37.3

Q ss_pred             CCcccccCCCCCCC-CCCCCCcEEe-----eCCCCceecccCCCCCCccccccccceec
Q psy2060          63 GDTCETDITKSDCK-GVCSPGATCS-----LNPSGGYICDDCSLAGSYEHYDRLCRLRA  115 (193)
Q Consensus        63 G~~C~~~~~~~~C~-~pC~~gg~C~-----~~~~~~~~C~~C~~g~~~~~~g~~C~~~~  115 (193)
                      |..|++.++  +|. +||+|||+|.     +.. ++|+|. ||++|.    |.+||..+
T Consensus         1 G~~c~~~~~--eC~s~pC~NgGtC~~~~~~d~~-~~y~C~-C~~g~~----G~~CE~~v   51 (55)
T 3u7u_G            1 GTSHLVKCA--EKEKTFCVNGGECFMVKDLSNP-SRYLCK-CPNEFT----GDRCQNYV   51 (55)
T ss_dssp             --CCEEECC--STTTTTSCTTCEEEEECCC--C-CCEEEE-ECTTEE----STTSCEEC
T ss_pred             CCCCcccCC--CCcCCCCCCCCCcCCCCccCCC-CCEeEe-CCCCCc----CCCcCccC
Confidence            678999987  999 9999999995     444 899999 999999    99999864

>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*

Probab=99.05  E-value=1.1e-09  Score=83.79  Aligned_cols=68  Identities=16%  Similarity=0.285  Sum_probs=56.1

Q ss_pred             ceEEecCCCCCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEcCCCC
Q psy2060         122 SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRADSI  193 (193)
Q Consensus       122 syl~~~~~~~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s~~~i  193 (193)
                      +|+.++.... ...+|+|+|||..++|+|||++. ....||++|+|.+|+  |+++|++|++.+++.+...|
T Consensus        28 ~y~~~~~~~~-~~~~is~~frT~~~~GlLly~~~-~~~~d~~~l~L~~G~--l~~~~~~g~~~~~~~s~~~v   95 (205)
T 1f5f_A           28 AVMTFDLTKI-TKTSSSFEVRTWDPEGVIFYGDT-NPKDDWFMLGLRDGR--PEIQLHNHWAQLTVGAGPRL   95 (205)
T ss_dssp             EEEEEEGGGC-CCCEEEEEEEESCSSEEEEEEEE-ETTTEEEEEEEETTE--EEEEEESSSCEEEEECSCCC
T ss_pred             EEEEECCCCC-CceEEEEEEEeCCCCEEEEEeCC-CCCCCEEEEEEECCE--EEEEEECCCceEEEecCCcc
Confidence            7788775443 33689999999999999999974 334699999999999  99999999998888766543

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}

Probab=99.04  E-value=1.9e-09  Score=89.80  Aligned_cols=76  Identities=28%  Similarity=0.568  Sum_probs=62.7

Q ss_pred             cccCC--CcceEEecCCC--CCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEcC
Q psy2060         115 ARSFP--KNSFLTFPALK--QRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRA  190 (193)
Q Consensus       115 ~~sF~--g~syl~~~~~~--~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s~  190 (193)
                      ...|.  +.||+.++...  ......|+|.|||..++|+|||.+. ....||++|+|.+|+  |+++|++|++..+|+++
T Consensus        21 a~~Fg~~~~S~~~~~~~~~~~~~~~~is~~frT~~~~GlLly~~~-~~~~d~~~l~L~~G~--l~~~~~~g~~~~~~~~~   97 (383)
T 2jd4_A           21 AHQFGLSQNSHLVLPLQQSDVRKRLQVQLSIRTFASSGLIYYVAH-QNQMDYATLQLQEGR--LHFMFDLGKGRTKVSHP   97 (383)
T ss_dssp             CEECCSSTTCEEEEECCSCCCSSEEEEEEEEEECCSCEEEEEEEC-TTSSSEEEEEEETTE--EEEEEECSSCEEEEECC
T ss_pred             ccccCCCCCeeEEEeCCchhcccceEEEEEEEcCCCCeEEEEeCC-CCCCcEEEEEEECCE--EEEEEECCCCeEEEeCc
Confidence            34555  48999997533  3556899999999999999999974 345799999999999  99999999999999887


Q ss_pred             CCC
Q psy2060         191 DSI  193 (193)
Q Consensus       191 ~~i  193 (193)
                      ..|
T Consensus        98 ~~~  100 (383)
T 2jd4_A           98 ALL  100 (383)
T ss_dssp             CCC
T ss_pred             cee
Confidence            653

>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*

Probab=99.02  E-value=1.6e-09  Score=83.94  Aligned_cols=74  Identities=12%  Similarity=0.267  Sum_probs=58.5

Q ss_pred             cccCC-CcceEEecCCC---C-CceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEc
Q psy2060         115 ARSFP-KNSFLTFPALK---Q-RNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNR  189 (193)
Q Consensus       115 ~~sF~-g~syl~~~~~~---~-~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s  189 (193)
                      +.+|. +.+|+.|...+   . .....|+|.|+|..++|+|||++......||++|+|.+|+  |+++|++|++...+++
T Consensus        12 ~~~F~~g~s~l~y~~~~~~~~~~~~~~isl~FrT~~~~GlLly~~~~~~~~dfi~LeL~~G~--l~~~~~~G~~~~~~~~   89 (220)
T 2r1b_A           12 TYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGK--IGVKFNVGTDDIAIEE   89 (220)
T ss_dssp             EEEEEEEEEEEEEECCGGGCCCBSEEEEEEEEECCCSSEEEEEEEESTTCCCEEEEEEETTE--EEEEEESSSSCEEEEC
T ss_pred             eEEECCCCeEEEEECCCCCcccccCcEEEEEEEeCCCCEEEEEecCCCCCCCeEEEEEECCE--EEEEEECCCCceEEEe
Confidence            35675 56888775332   1 2234799999999999999997542346899999999999  9999999999888887


Q ss_pred             C
Q psy2060         190 A  190 (193)
Q Consensus       190 ~  190 (193)
                      .
T Consensus        90 ~   90 (220)
T 2r1b_A           90 S   90 (220)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}

Probab=99.01  E-value=1.4e-09  Score=81.69  Aligned_cols=67  Identities=25%  Similarity=0.484  Sum_probs=57.2

Q ss_pred             cccCCCcceEEecCCCC---CceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEE
Q psy2060         115 ARSFPKNSFLTFPALKQ---RNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVAR  186 (193)
Q Consensus       115 ~~sF~g~syl~~~~~~~---~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~  186 (193)
                      ...|.|.+|+.|+....   .....|+|+|||..++|+|||.+   +..||++|+|.+|+  |+++|++|++..+
T Consensus         7 ~~~F~G~sy~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~g---~~~d~l~l~L~~G~--l~~~~~~G~g~~~   76 (184)
T 2h0b_A            7 IATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTG---KSADYVNLALKNGA--VSLVINLGSGAFE   76 (184)
T ss_dssp             EEEEESSEEEEEECSSSCEEESEEEEEEEEEESCSCEEEEEEC---CTTEEEEEEEETTE--EEEEEEESSCEEE
T ss_pred             eeEECCceEEEEccccCccccCccEEEEEEEeCCCCEEEEEeC---CCCCEEEEEEECCE--EEEEEECCCCeEE
Confidence            46799999999976542   24578999999999999999985   36799999999999  9999999998754

>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*

Probab=99.00  E-value=2.7e-09  Score=79.91  Aligned_cols=73  Identities=12%  Similarity=0.267  Sum_probs=57.8

Q ss_pred             cccCC-CcceEEecCCC----CCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEc
Q psy2060         115 ARSFP-KNSFLTFPALK----QRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNR  189 (193)
Q Consensus       115 ~~sF~-g~syl~~~~~~----~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s  189 (193)
                      +.+|. +.+|+.|...+    ......|+|.|||..++|+|||.+......||++|+|.+|+  |+++|++|++...+..
T Consensus         6 ~~~F~~~~s~l~y~~~~~~~~~~~~~~isl~FrT~~~~GlLl~~~~~~~~~dfi~l~L~~G~--l~~~~~~G~~~~~~~~   83 (178)
T 3bod_A            6 TYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGK--IGVKFNVGTDDIAIEE   83 (178)
T ss_dssp             EEEEEEEEEEEEEECCTTSCCCBSEEEEEEEEECCCSSEEEEEEEESSSSCCEEEEEEETTE--EEEEEESSSCCEEEEC
T ss_pred             EEEECCCCcEEEEECCCcCCCCccccEEEEEEEECCCCEEEEEEcCCCCCCCEEEEEEECCE--EEEEEECCCCceEEec
Confidence            35675 46888875433    13346899999999999999997432457899999999999  9999999999888773

>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*

Probab=98.99  E-value=2.8e-09  Score=82.90  Aligned_cols=73  Identities=12%  Similarity=0.220  Sum_probs=58.6

Q ss_pred             cccCCCcceEEecCCC----CCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEcC
Q psy2060         115 ARSFPKNSFLTFPALK----QRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRA  190 (193)
Q Consensus       115 ~~sF~g~syl~~~~~~----~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s~  190 (193)
                      ..+|.+ +|+.|...+    ......|+|.|+|..++|+|||.+......||++|+|.+|+  |+++|++|++...+++.
T Consensus        42 ~f~~~g-s~i~y~~~~~~~~~~~~~~isl~FrT~~~~GlLl~~~~~~~~~dfi~L~L~~G~--l~~~~~~G~~~~~~~~~  118 (226)
T 2r1d_A           42 IFSKGG-GQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGK--IGVKFNVGTDDIAIEES  118 (226)
T ss_dssp             EEEEEE-EEEEEECCGGGCCCBSEEEEEEEEECCCSSEEEEEEEECTTCCCEEEEEEETTE--EEEEEESSSCEEEEECC
T ss_pred             EEecCC-cEEEEECCccccccccccEEEEEEEeCCCCEEEEEecCCCCCCCEEEEEEECCE--EEEEEECCCCcEEEEeC
Confidence            356677 888875433    12335899999999999999997532346899999999999  99999999999888864

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=98.97  E-value=2.3e-12  Score=101.97  Aligned_cols=84  Identities=12%  Similarity=0.024  Sum_probs=66.3

Q ss_pred             CCcee-cCCCCccCCCCcceeec--------------------------------------CC--ccCCCCceeeCCCCC
Q psy2060          23 QPYLS-GLPDNEGLEKRVQTFVD--------------------------------------GG--HRTLDLLHDMGARYH   61 (193)
Q Consensus        23 ~~~~c-C~~g~~g~~~~c~~~~~--------------------------------------gg--~~~~~~~~C~C~~g~   61 (193)
                      ..|.| |++||+|..  |+++++                                      ||  .+...+|+|.||+||
T Consensus        51 ~~y~C~Cp~Gf~G~~--Ce~ni~ec~~~~~c~s~pC~nggtc~~G~~c~~~~eC~s~pC~ngG~C~~~~~sy~C~C~~Gf  128 (267)
T 4fbr_A           51 MTYNGEGPIGFRGTL--SSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNIVAVSIKSNDGGKTLTGTTTYNGEGPIGF  128 (267)
T ss_dssp             EEETTSCCEEEEEEE--CSTTEEEEEEESSSTTSCEEEEEEEECCCCSSCCEEEEEEECSSTTSEEEEEEEETTSCCEEE
T ss_pred             CCeEEeCCCCccccc--ccccccccccccCcCCCcccCCCeeeccCccccccccCCCCCCCCCEEecCCccEEeeCCCCc
Confidence            56888 999999997  876554                                      33  455578999999999


Q ss_pred             CCCcccccCCC---------------------CC------CC-CCCCCCcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          62 WGDTCETDITK---------------------SD------CK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        62 ~G~~C~~~~~~---------------------~~------C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      +|.+|+..++.                     ..      |. .||.++|+|++.. ++|+|. ||++|+    |.+|+.
T Consensus       129 ~G~~Ce~~~d~C~n~~~c~s~pC~ngg~c~~G~~c~~~i~c~~~~c~ngg~C~dg~-~~y~C~-Cp~Gf~----G~~c~~  202 (267)
T 4fbr_A          129 KSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVINVDAKSNDGGKTLSGT-MTYNGE-GPIGFR----GTLTSP  202 (267)
T ss_dssp             EEEECCCCEEEEEEECSSTTSCCEEEEEEECCSSTTSCEEEEEEECSSTTSEEEEE-EEETTS-CCEEEE----EEEEET
T ss_pred             cccCCCCCcccccccCCcCCccccCCcceecccccccccccCCCCCCCCCEeeCCC-CCeEEe-CCCCcc----cccccc
Confidence            99999876540                     01      12 5788888998887 999999 999998    889987


Q ss_pred             e
Q psy2060         114 R  114 (193)
Q Consensus       114 ~  114 (193)
                      .
T Consensus       203 ~  203 (267)
T 4fbr_A          203 D  203 (267)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A

Probab=98.95  E-value=6.1e-09  Score=87.12  Aligned_cols=72  Identities=33%  Similarity=0.469  Sum_probs=59.5

Q ss_pred             CCcceEEecC--CCCCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEcCCCC
Q psy2060         119 PKNSFLTFPA--LKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRADSI  193 (193)
Q Consensus       119 ~g~syl~~~~--~~~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s~~~i  193 (193)
                      ...+|+.++.  .......+|+|+|||..++|+|||.+. ....||++|+|.+|+  |+++|++|++..+++++..|
T Consensus        41 ~~~s~~~~~~~~~~~~~~~~is~~frT~~~~GlLly~~~-~~~~dfi~l~L~~G~--l~~~~~~g~g~~~~~~~~~~  114 (394)
T 1dyk_A           41 SRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMAR-INHADFATVQLRNGF--PYFSYDLGSGDTSTMIPTKI  114 (394)
T ss_dssp             STTCEEEEECCGGGGSSEEEEEEEEEECCSCEEEEEEEC-TTSSSEEEEEEETTE--EEEEEESSSCEEEEECCSCC
T ss_pred             CCCcEEEEEcCccccccceEEEEEEEeCCCCeEEEEcCC-CCCCceEEEEEECCE--EEEEEECCCCceEEEccccc
Confidence            3478877753  233567899999999999999999974 346799999999999  99999999999999887653

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=98.93  E-value=2.3e-10  Score=78.91  Aligned_cols=75  Identities=24%  Similarity=0.339  Sum_probs=27.2

Q ss_pred             cCCCCccCCCCcceee--c--CC-----ccCCCCceeeCCCCCCC---CcccccCCCCCCC--CCCCCCcEEeeCCCCce
Q psy2060          28 GLPDNEGLEKRVQTFV--D--GG-----HRTLDLLHDMGARYHWG---DTCETDITKSDCK--GVCSPGATCSLNPSGGY   93 (193)
Q Consensus        28 C~~g~~g~~~~c~~~~--~--gg-----~~~~~~~~C~C~~g~~G---~~C~~~~~~~~C~--~pC~~gg~C~~~~~~~~   93 (193)
                      ...+|+|..  |+++.  +  ++     .++.++|.|.|++||+|   ..|+ +++  +|.  .+|.  ++|++.. ++|
T Consensus        18 ~~~~~~~~~--Cd~neC~~~~~~C~~~C~n~~g~y~C~C~~Gy~g~~g~~C~-did--eC~~~~~C~--~~C~n~~-gsy   89 (107)
T 2w2n_E           18 TENLYFQGA--MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCE-DID--ECQDPDTCS--QLCVNLE-GGY   89 (107)
T ss_dssp             --CCCCSCC--BSCCGGGTGGGGCSSEEECCSBSCEEECCTTCEEETTTEEE-C--------------------------
T ss_pred             cCCCcCCCC--CcCccCcCCCCCCCCEeEeCCCCeEEECCCCccccCCCccc-ccc--ccCCCCCcC--CeeecCC-CCE
Confidence            456777776  74321  1  22     67788999999999998   8898 665  997  8996  6999998 999


Q ss_pred             ecccCCCCCCcccccccc
Q psy2060          94 ICDDCSLAGSYEHYDRLC  111 (193)
Q Consensus        94 ~C~~C~~g~~~~~~g~~C  111 (193)
                      +|. |++||.+...+..|
T Consensus        90 ~C~-C~~Gy~~~~d~~~C  106 (107)
T 2w2n_E           90 KCQ-CEEGFQLDPHTKAC  106 (107)
T ss_dssp             ------------------
T ss_pred             EEE-CCCCceECCCCCcc
Confidence            999 99999854444444

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=98.90  E-value=8.7e-10  Score=72.32  Aligned_cols=52  Identities=23%  Similarity=0.377  Sum_probs=45.7

Q ss_pred             ccCCCCceeeCCCCCC--CCcccccCCCCCCC--CCCCCCcEEeeCCCCceecccCCCCCCc
Q psy2060          47 HRTLDLLHDMGARYHW--GDTCETDITKSDCK--GVCSPGATCSLNPSGGYICDDCSLAGSY  104 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~--G~~C~~~~~~~~C~--~pC~~gg~C~~~~~~~~~C~~C~~g~~~  104 (193)
                      .++.++|+|.|++||+  |..|+ +++  +|.  +||.+ ++|++.. ++|+|. |++||.+
T Consensus        20 ~n~~g~y~C~C~~Gy~~~g~~C~-did--eC~~~~~C~~-~~C~n~~-g~y~C~-C~~G~~g   75 (82)
T 1emn_A           20 INTDGSYRCECPFGYILAGNECV-DTD--ECSVGNPCGN-GTCKNVI-GGFECT-CEEGFEP   75 (82)
T ss_dssp             CCCSSCCCEECCTTEEEETTEEE-ECC--GGGTCCTTSS-SCEEECS-SSEEEC-CSSSSCC
T ss_pred             EecCCCEEEECCCCeECCCCccC-Ccc--cccCCCCCCC-CEeECCC-CCEEeE-CCCCeEe
Confidence            5788999999999997  99995 555  997  89987 5999998 999999 9999984

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=98.89  E-value=4.3e-10  Score=74.46  Aligned_cols=59  Identities=22%  Similarity=0.430  Sum_probs=48.0

Q ss_pred             ccCCCCceeeCCCCCC-----CCcccccCCCCCCC-CC--CCCCcEEeeCCCCceecccCCCCCCcccccccc
Q psy2060          47 HRTLDLLHDMGARYHW-----GDTCETDITKSDCK-GV--CSPGATCSLNPSGGYICDDCSLAGSYEHYDRLC  111 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~-----G~~C~~~~~~~~C~-~p--C~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C  111 (193)
                      .++.++|+|.|++||+     |..|+ +++  +|. .|  |. +++|++.. ++|+|. |++||.+...+..|
T Consensus        19 ~n~~g~y~C~C~~Gy~~~~~~g~~C~-did--eC~~~~~~C~-~~~C~n~~-g~y~C~-C~~G~~~~~~~~~C   85 (86)
T 1lmj_A           19 VNTPGDFECKCDEGYESGFMMMKNCM-DID--ECQRDPLLCR-GGVCHNTE-GSYRCE-CPPGHQLSPNISAC   85 (86)
T ss_dssp             EEETTEEEECCCSSEEECTTTSSSEE-ECC--HHHHCSSTTT-TSEEEEET-TEEEEE-SCTTSCCCSSSCCC
T ss_pred             ECCCCCEEeeCCCCcCccCCCCCccC-Ccc--cccCCCCcCC-CCEeEcCC-CCEEEE-CcCCcccCCCCCcc
Confidence            5778899999999998     78897 555  998 66  65 58999998 999999 99999854444444

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=98.88  E-value=1.2e-09  Score=78.70  Aligned_cols=58  Identities=19%  Similarity=0.414  Sum_probs=47.8

Q ss_pred             CCceeeCCCCCCCCcccccC----------CCCCCC-CCCCCCcEEe-------eCCCCceecccCCCCCCccccccccc
Q psy2060          51 DLLHDMGARYHWGDTCETDI----------TKSDCK-GVCSPGATCS-------LNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        51 ~~~~C~C~~g~~G~~C~~~~----------~~~~C~-~pC~~gg~C~-------~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      ++|+|.|++||+|..|+...          +.++|. +||.++++|+       +.. ++|+|. |++||.    |..|+
T Consensus        21 g~~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~~~-~~~~C~-C~~G~~----G~~C~   94 (143)
T 4d90_A           21 GSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTF-IGYVCK-CPRGFN----GIHCQ   94 (143)
T ss_dssp             -CCEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTSSCCCCTTCEEEECCCEETTEE-CCEEEE-CCTTEE----STTSC
T ss_pred             CCEEeECCCCCCCCCCccCccccccccccccCCcCCCCCCCCCCEecCCCccccCCC-CCeEeE-CcCCCc----CCCcc
Confidence            68999999999999998621          124899 9999999999       444 799999 999998    89997


Q ss_pred             ee
Q psy2060         113 LR  114 (193)
Q Consensus       113 ~~  114 (193)
                      ..
T Consensus        95 ~~   96 (143)
T 4d90_A           95 HN   96 (143)
T ss_dssp             EE
T ss_pred             cC
Confidence            43

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}

Probab=98.87  E-value=1.3e-08  Score=89.69  Aligned_cols=73  Identities=27%  Similarity=0.420  Sum_probs=58.4

Q ss_pred             cccCCCcceEEecCC-CCCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEcC
Q psy2060         115 ARSFPKNSFLTFPAL-KQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRA  190 (193)
Q Consensus       115 ~~sF~g~syl~~~~~-~~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s~  190 (193)
                      ..+|.|.+|+.|++. .......|+|+|+|..++|+|||.+. ....||++|+|.+|+  |+++|++|++..+|+++
T Consensus        12 ~~~F~g~~~~~y~p~~~~~~~~~isl~FrT~~~~glLly~~~-~~~~dfl~l~L~~G~--l~~~~~~G~g~~~l~~~   85 (608)
T 2wjs_A           12 SVSSGGDCVRTYRPEIKKGSYNNIVVHVKTAVADNLLFYLGS-AKFIDFLAIEMRKGK--VSFLWDVGSGVGRVEYP   85 (608)
T ss_dssp             BCC----CEEEECCCCSCTTEEEEEEEEEESCSCEEEEEEEC-SSCSCEEEEEEETTE--EEEEEESSSCEEEEECC
T ss_pred             EEEcCCCeEEEecCCCCCcccceEEEEEecCCCceEEEEeCC-CCCCcEEEEEEECCE--EEEEEECCCCceEEeeC
Confidence            467899999999752 22445789999999999999999975 346899999999999  99999999999999864

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=98.86  E-value=5.7e-10  Score=80.74  Aligned_cols=67  Identities=25%  Similarity=0.304  Sum_probs=53.9

Q ss_pred             cCC--ccCCCCceeeCCCCCCCCcccccCCCCCCC-CCCCCCc---EEeeCCCC-ceecccCCCCCCcccccccccee
Q psy2060          44 DGG--HRTLDLLHDMGARYHWGDTCETDITKSDCK-GVCSPGA---TCSLNPSG-GYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        44 ~gg--~~~~~~~~C~C~~g~~G~~C~~~~~~~~C~-~pC~~gg---~C~~~~~~-~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      ++|  .+..++|+|.|++||+|.+|+..++  .|. .+|.+++   +|++.. + +|+|. |++||.....|..|+..
T Consensus        57 n~g~C~~~~g~y~C~C~~G~~G~~C~~~~~--~c~~c~~~~~~C~~~C~~~~-g~~y~C~-C~~Gy~l~~dG~~C~~~  130 (142)
T 2c4f_L           57 NGGSCKDQLQSYICFCLPAFEGRNCETHKD--DQLICVNENGGCEQYCSDHT-GTKRSCR-CHEGYSLLADGVSCTPT  130 (142)
T ss_dssp             TTCEEEEETTEEEEECCTTEESTTSCEEGG--GCCSTTTGGGGCSSEEECCT-TSCCEEE-CCTTEEECTTSSCEEES
T ss_pred             CCCEEeCCCCCEEeeCCCCccCCccccCcc--ccccccCCCCCccCEeECCC-CCCEEEE-CCCCceECCCCCCCCCC
Confidence            355  6778899999999999999997544  665 5666666   999987 7 99999 99999865557888764

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}

Probab=98.85  E-value=7.6e-09  Score=91.12  Aligned_cols=81  Identities=22%  Similarity=0.369  Sum_probs=62.3

Q ss_pred             cccccee--cccCCCcceEEecCCCC--CceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCc
Q psy2060         108 DRLCRLR--ARSFPKNSFLTFPALKQ--RNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSE  183 (193)
Q Consensus       108 g~~C~~~--~~sF~g~syl~~~~~~~--~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g  183 (193)
                      ++.|+..  +.+|.+.+|+.++....  .....|+|+|||..++|+|||.+. ....||++|+|.+|+  |+++|++|++
T Consensus       196 ~p~~~~~~~~~~F~g~sy~~~~~~~~~~~~~~~isl~FrT~~~~GlLl~~~~-~~~~d~l~L~L~~G~--l~~~~~~g~~  272 (608)
T 2wjs_A          196 SPQVEDSEGTIQFDGEGYALVSRPIRWYPNISTVMFKFRTFSSSALLMYLAT-RDLKDFMSVELSDGH--VKVSYDLGSG  272 (608)
T ss_dssp             ------CCCCEEEEEEEEEEEECCTTCBTTEEEEEEEEEESCSEEEEEEEEC-TTSSSEEEEEEETTE--EEEEEECSSC
T ss_pred             CcccccCCcceEECCCcceEEeccccCCCcceEEEEEEEeCCCCeEEEEecC-CCCCceEEEEEECCE--EEEEEECCCC
Confidence            3456553  57899999999874322  345789999999999999999874 345899999999999  9999999999


Q ss_pred             eEEEEcCC
Q psy2060         184 VARLNRAD  191 (193)
Q Consensus       184 ~~~l~s~~  191 (193)
                      ..+++++.
T Consensus       273 ~~~l~s~~  280 (608)
T 2wjs_A          273 MTSVVSNQ  280 (608)
T ss_dssp             EEEEEEEE
T ss_pred             cEEEEcCc
Confidence            88887653

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=98.84  E-value=5.6e-10  Score=84.84  Aligned_cols=66  Identities=18%  Similarity=0.357  Sum_probs=31.8

Q ss_pred             cCC--ccCCCCceeeCCCCCCCCcccccC-CCCCCC---CCCCCCcEEeeCCCCceecccCCCCCCccccccccceec
Q psy2060          44 DGG--HRTLDLLHDMGARYHWGDTCETDI-TKSDCK---GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRA  115 (193)
Q Consensus        44 ~gg--~~~~~~~~C~C~~g~~G~~C~~~~-~~~~C~---~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~~  115 (193)
                      +||  .+..++|.|.|++||+|..|+..+ +  +|.   .+|.+  +|++.. ++|.|. |++||.....|..|+...
T Consensus        52 ngg~C~n~~g~y~C~C~~Gf~G~~Ce~~i~d--eC~~~~~~C~~--~C~n~~-gsy~C~-C~~Gy~l~~dG~~C~~~~  123 (195)
T 1nfu_B           52 NQGKCKDGLGEYTCTCLEGFEGKNCELFTRK--LCSLDNGDCDQ--FCHEEQ-NSVVCS-CARGYTLADNGKACIPTG  123 (195)
T ss_dssp             -----------------------------CC--GGGTGGGGCSS--EEEEET-TEEEEE-CCTTEEECTTSSCEEESS
T ss_pred             CCCEeECCCCCeeEeCCCCceeccccccccc--cccCCCCCCCC--EeECCC-CCeEEE-CCCCceeCCCCCccccCC
Confidence            455  677889999999999999999765 4  898   46876  999998 999999 999998655688898753

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.84  E-value=2.9e-10  Score=83.95  Aligned_cols=79  Identities=15%  Similarity=0.276  Sum_probs=61.8

Q ss_pred             Ccee-cCCCCc-cCCCCcceeecCCccCCCCceeeCCC--CCCCC---cccccCCCCCCC---CCCCCCcEEeeCCCCce
Q psy2060          24 PYLS-GLPDNE-GLEKRVQTFVDGGHRTLDLLHDMGAR--YHWGD---TCETDITKSDCK---GVCSPGATCSLNPSGGY   93 (193)
Q Consensus        24 ~~~c-C~~g~~-g~~~~c~~~~~gg~~~~~~~~C~C~~--g~~G~---~C~~~~~~~~C~---~pC~~gg~C~~~~~~~~   93 (193)
                      .|.| |++||. |..  |+.+.+   +..++|.|.|++  ||+|.   .+..+++  +|.   .+|.+ ++|++.. ++|
T Consensus        74 ~~~C~C~~G~~~~~~--C~~C~~---~~~~~y~C~C~~g~G~~~~~~~~~c~did--eC~~~~~~C~~-g~C~n~~-gsy  144 (162)
T 1uzk_A           74 KASCCCSLGKAWGTP--CEMCPA---VNTSEYKILCPGGEGFRPNPITVILEDID--ECQELPGLCQG-GKCINTF-GSF  144 (162)
T ss_dssp             HHHHHTTTCCEETTT--TEECCC---TTSHHHHHHCTTCTTEEECTTTCCEEECC--HHHHCGGGGBT-SEEEECS-SCE
T ss_pred             CceeeCCCCCCcCCC--cccCCC---CCCCCceeECCCCCCcccCCCCCccCccc--cccCCCCCcCC-CEeEcCC-CCE
Confidence            6888 999998 665  886642   345689999998  99986   3445666  998   46987 6999998 999


Q ss_pred             ecccCCCCCCccccccccc
Q psy2060          94 ICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        94 ~C~~C~~g~~~~~~g~~C~  112 (193)
                      +|. |++||.+...++.|+
T Consensus       145 ~C~-C~~Gy~g~~d~~~C~  162 (162)
T 1uzk_A          145 QCR-CPTGYYLNEDTRVCD  162 (162)
T ss_dssp             EEE-CCTTCCBCTTTCBBC
T ss_pred             Eee-CCCCccCCCCCCccC
Confidence            999 999999655566663

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=98.83  E-value=3.1e-09  Score=86.93  Aligned_cols=74  Identities=18%  Similarity=0.345  Sum_probs=56.9

Q ss_pred             Ccee-cCCCCccCCCCcceee------cCCccCCCCceeeCCCCCCCCcccccCCCCCCCCCCCCCcEEeeCCCCceecc
Q psy2060          24 PYLS-GLPDNEGLEKRVQTFV------DGGHRTLDLLHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICD   96 (193)
Q Consensus        24 ~~~c-C~~g~~g~~~~c~~~~------~gg~~~~~~~~C~C~~g~~G~~C~~~~~~~~C~~pC~~gg~C~~~~~~~~~C~   96 (193)
                      ++.| |++||+|..  |+.+.      ++|.-. ..+.|.|++||+|..|+..    .|..+|.++|+|+.    .++|.
T Consensus       164 ~~~C~C~~G~~G~~--C~~~~C~~~C~~~G~C~-~~~~C~C~~G~~G~~C~~~----~C~~~C~~~G~C~~----~~~C~  232 (324)
T 2ygq_A          164 RRICECPDGFHGPH--CEKALCTPRCMNGGLCV-TPGFCICPPGFYGVNCDKA----NCSTTCFNGGTCFY----PGKCI  232 (324)
T ss_dssp             TSCEECCTTEESSS--SCEESSSSCCCTTCEEC-SSCCEECCTTCBTTTTCBC----CCSSCCCSSCCBSC----SSCBC
T ss_pred             CCeEECCCCCcCCC--CCCCCCCCCCCCCCEEc-CCCEEeCCCCccCCCcccC----cCCCCCCCCCeeCC----CCeee
Confidence            5789 999999997  88642      344111 2578999999999999864    67788999999974    46899


Q ss_pred             cCCCCCCccccccccce
Q psy2060          97 DCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        97 ~C~~g~~~~~~g~~C~~  113 (193)
                       |++||.    |..|+.
T Consensus       233 -C~~G~~----G~~C~~  244 (324)
T 2ygq_A          233 -CPPGLE----GEQCEI  244 (324)
T ss_dssp             -CCTTCC----TTTTC-
T ss_pred             -CCCCcc----CCCCCc
Confidence             999998    788875

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=98.80  E-value=2.3e-09  Score=74.67  Aligned_cols=64  Identities=16%  Similarity=0.253  Sum_probs=51.3

Q ss_pred             ccCCCCceeeCCCCCCCCcccccCCCCCCC---CCCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          47 HRTLDLLHDMGARYHWGDTCETDITKSDCK---GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~G~~C~~~~~~~~C~---~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      .++.++|+|.|++||+|..|+..++.++|.   .+|.+  +|++.. ++|+|. |++||.+...|..|+..
T Consensus        29 ~~~~~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~--~C~n~~-g~y~C~-C~~G~~~~~~g~~C~~~   95 (114)
T 1aut_L           29 IDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEV-GWRRCS-CAPGYKLGDDLLQCHPA   95 (114)
T ss_dssp             CCCSSCCCEEECTTEESTTSCEECCSSSSSSGGGGCSS--EEEECS-SSEEEE-CCTTEEECTTSSCEEEC
T ss_pred             CCCCCCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCC--EeECCC-CCEEeE-CCCCeeECCCCCccCcC
Confidence            677889999999999999998764223686   35554  999998 999999 99999866667778653

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=98.78  E-value=2.2e-09  Score=77.99  Aligned_cols=64  Identities=20%  Similarity=0.483  Sum_probs=53.1

Q ss_pred             cCC--ccCCCCceeeCCCCCCCCcccccCCCCCCC---CCCCCCcEE-eeCCCCceecccCCCCCCcccccccccee
Q psy2060          44 DGG--HRTLDLLHDMGARYHWGDTCETDITKSDCK---GVCSPGATC-SLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        44 ~gg--~~~~~~~~C~C~~g~~G~~C~~~~~~~~C~---~pC~~gg~C-~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      ++|  .+..++|.|.|++||+|..|+.. +  +|.   .+|.+  +| ++.. ++|+|. |++||.+...|..|+..
T Consensus        58 n~g~C~~~~~~y~C~C~~G~~G~~C~~~-d--eC~~~~~~C~~--~C~~n~~-g~y~C~-C~~Gy~l~~dG~~C~~~  127 (146)
T 1x7a_L           58 NGGLCKDDINSYECWCQVGFEGKNCELD-A--TCNIKNGRCKQ--FCKTGAD-SKVLCS-CTTGYRLAPDQKSCKPA  127 (146)
T ss_dssp             TTCEEEECSSCEEEECCSSEESTTTCEE-C--CTTSGGGSCSS--BCCCCSS-SCCCCB-CCTTEEECTTSSSEEEC
T ss_pred             CCCEeECCCCCEEEecCCCCcCCcCCCC-c--cccCCCCCCcC--CCCCCCC-CCEEeE-cCCCcEeCCCCCcCCCC
Confidence            355  67888999999999999999865 4  898   36776  89 8887 999999 99999865567888764

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=98.76  E-value=1.5e-09  Score=77.81  Aligned_cols=65  Identities=18%  Similarity=0.360  Sum_probs=30.6

Q ss_pred             cCC--ccCCCCceeeCCCCCCCCcccccC-CCCCCC---CCCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          44 DGG--HRTLDLLHDMGARYHWGDTCETDI-TKSDCK---GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        44 ~gg--~~~~~~~~C~C~~g~~G~~C~~~~-~~~~C~---~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      ++|  .+..++|.|.|++||+|..|+..+ +  +|.   .+|.+  +|++.. ++|+|. |++||.+...|..|+..
T Consensus        52 n~g~C~~~~~~y~C~C~~G~~G~~C~~~i~d--~C~~~~~~C~~--~C~~~~-g~y~C~-C~~Gy~l~~~g~~C~~~  122 (134)
T 2vh0_B           52 NQGKCKDGLGEYTCTCLEGFEGKNCELFTRK--LCSLDNGDCDQ--FCHEEQ-NSVVCS-CARGYTLADNGKACIPT  122 (134)
T ss_dssp             -----------------------------CC--GGGTGGGGCSS--EEEEET-TEEEEE-CCTTEEECTTSSCEEES
T ss_pred             CcCCcccCCCCEEeeCCCCccCCccccCCCC--ccccCCCCCCC--EeECCC-CCEEEE-CCCCcEECCCCCccCcC
Confidence            355  677889999999999999999765 4  798   46776  999988 999999 99999865557888754

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=98.76  E-value=6e-11  Score=93.89  Aligned_cols=88  Identities=11%  Similarity=-0.056  Sum_probs=65.5

Q ss_pred             cCCCCCCcee-cCCC---CccCCCCcceeec--------CC--ccCCCCceeeCCCCCCCCcccccCCC-----------
Q psy2060          18 TNGPFQPYLS-GLPD---NEGLEKRVQTFVD--------GG--HRTLDLLHDMGARYHWGDTCETDITK-----------   72 (193)
Q Consensus        18 ~~~~~~~~~c-C~~g---~~g~~~~c~~~~~--------gg--~~~~~~~~C~C~~g~~G~~C~~~~~~-----------   72 (193)
                      .|.... +.+ |.||   +.|..  ++..++        ||  .+..++|.|.||+||+|.+|+..++.           
T Consensus         7 ~n~~Gg-~s~~~~pgg~~~~g~~--~~~n~~~~~~~c~ngG~C~~g~~~y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~p   83 (267)
T 4fbr_A            7 QNQWGG-SQATWNPGGLWLIGAR--DKQNVVALDIKSDDGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAP   83 (267)
T ss_dssp             EEECSS-TTSCCEEEEEEECCCC--SSCCEEEEEEECSSTTSEEEEEEEETTSCCEEEEEEECSTTEEEEEEESSSTTSC
T ss_pred             eecCCc-ccCCcCCCCceeeccc--cccccccCCCCcCCCCeecCCCCCeEEeCCCCcccccccccccccccccCcCCCc
Confidence            344433 444 6666   56664  664443        66  77788999999999999999876540           


Q ss_pred             ----------------CCCC-CCCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          73 ----------------SDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        73 ----------------~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                                      .+|. .||.++|+|++.. .+|+|. ||.+|+    |..|+..
T Consensus        84 C~nggtc~~G~~c~~~~eC~s~pC~ngG~C~~~~-~sy~C~-C~~Gf~----G~~Ce~~  136 (267)
T 4fbr_A           84 WQPGGVWVLGARDKQNIVAVSIKSNDGGKTLTGT-TTYNGE-GPIGFK----SEVTDGD  136 (267)
T ss_dssp             EEEEEEEECCCCSSCCEEEEEEECSSTTSEEEEE-EEETTS-CCEEEE----EEECCCC
T ss_pred             ccCCCeeeccCccccccccCCCCCCCCCEEecCC-ccEEee-CCCCcc----ccCCCCC
Confidence                            1255 7888889999887 999999 999999    8888874

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=98.74  E-value=4.4e-09  Score=86.04  Aligned_cols=74  Identities=24%  Similarity=0.447  Sum_probs=30.7

Q ss_pred             Ccee-cCCCCccCCCCccee------ecCCccCCCCceeeCCCCCCCCcccccCCCCCCCCCCCCCcEEeeCCCCceecc
Q psy2060          24 PYLS-GLPDNEGLEKRVQTF------VDGGHRTLDLLHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICD   96 (193)
Q Consensus        24 ~~~c-C~~g~~g~~~~c~~~------~~gg~~~~~~~~C~C~~g~~G~~C~~~~~~~~C~~pC~~gg~C~~~~~~~~~C~   96 (193)
                      ++.| |++||+|..  |+..      .++|.- ...+.|.|++||+|..|+..    .|..+|.++|+|+    +.++|.
T Consensus       196 ~~~C~C~~G~~G~~--C~~~~C~~~C~~~G~C-~~~~~C~C~~G~~G~~C~~~----~C~~~C~~~g~C~----~~~~C~  264 (324)
T 2ygq_A          196 PGFCICPPGFYGVN--CDKANCSTTCFNGGTC-FYPGKCICPPGLEGEQCEIS----KCPQPCRNGGKCI----GKSKCK  264 (324)
T ss_dssp             SCCEECCTTCBTTT--TCBCCCSSCCCSSCCB-SCSSCBCCCTTCCTTTTC-----------------------------
T ss_pred             CCEEeCCCCccCCC--cccCcCCCCCCCCCee-CCCCeeeCCCCccCCCCCcC----cCCCcCCCCCEEC----CCCEEE
Confidence            5778 999999997  8753      234411 12479999999999999853    7878899999997    357899


Q ss_pred             cCCCCCCccccccccce
Q psy2060          97 DCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        97 ~C~~g~~~~~~g~~C~~  113 (193)
                       |++||.    |..|+.
T Consensus       265 -C~~G~~----G~~C~~  276 (324)
T 2ygq_A          265 -CSKGYQ----GDLCSK  276 (324)
T ss_dssp             -----------------
T ss_pred             -CCCCCc----CCCCcC
Confidence             999998    888874

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.70  E-value=1.2e-08  Score=82.89  Aligned_cols=61  Identities=16%  Similarity=0.316  Sum_probs=51.9

Q ss_pred             ccCCCCceeeCCCCCCCCcccccCCCCCCC----CCCCCCcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          47 HRTLDLLHDMGARYHWGDTCETDITKSDCK----GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~G~~C~~~~~~~~C~----~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      .+..++|.|.|++||+|.+|+.+++  +|.    .||.+  .|++.. ++|+|. |++||.+...+..|..
T Consensus        20 ~~~~~~~~C~C~~g~~g~~C~~~~~--eC~~~~~~~C~~--~C~~~~-g~~~C~-C~~g~~~~~~~~~C~~   84 (317)
T 3h5c_B           20 QDSIWGYTCTCSPGYEGSNCELAKN--ECHPERTDGCQH--FCLPGQ-ESYTCS-CAQGYRLGEDHKQCVP   84 (317)
T ss_dssp             CCCSSSCCCCCSSSCCSSSSCCCSS--SCCTTCTTSCSS--EEECCS-SSCEEE-CCTTEECCTTSSCCEE
T ss_pred             ECCCCCeEEECCCCCcCCccccCcc--cCCCCCCCCCcC--ccccCC-CeeEEe-cccccccccccccccc
Confidence            5677899999999999999998876  997    58988  999988 999999 9999986545566755

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}

Probab=98.67  E-value=7.5e-08  Score=80.06  Aligned_cols=69  Identities=28%  Similarity=0.376  Sum_probs=58.0

Q ss_pred             ccCCCcceEEe--cCCCCCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEE
Q psy2060         116 RSFPKNSFLTF--PALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLN  188 (193)
Q Consensus       116 ~sF~g~syl~~--~~~~~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~  188 (193)
                      ..|.+.+|+.+  +.........|+|.|||..++|+|||.+  ....||++|+|.+|+  |+++|++|++...++
T Consensus       201 ~~F~g~sy~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~--~~~~d~l~l~L~~G~--l~~~~~~g~g~~~~~  271 (383)
T 2jd4_A          201 TFFEGSGYAALVKEGYKVRLDLQITLEFRTTSKNGVLLGIS--SAKVDAIGLEIVDGK--VLFHVNNGAGRITAT  271 (383)
T ss_dssp             EEEEEEEEEEEEEEEECCBSCEEEEEEEEESCSCEEEEEEE--CSSSCEEEEEEETTE--EEEEEESSSCEEEEE
T ss_pred             ceECCCeEEEEecCccccCCceEEEEEEEeCCCCEEEEEec--CCCCcEEEEEEECCE--EEEEEECCCCcEEEE
Confidence            46888999998  3444455678999999999999999986  346799999999999  999999998877664

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.67  E-value=1.5e-08  Score=85.70  Aligned_cols=78  Identities=21%  Similarity=0.319  Sum_probs=59.9

Q ss_pred             ee-cCCCCccCCCCcce----eecCCccCCCCceeeCCCCCCCCcccccCCC--------CCCC--CCCCCCcEEeeCCC
Q psy2060          26 LS-GLPDNEGLEKRVQT----FVDGGHRTLDLLHDMGARYHWGDTCETDITK--------SDCK--GVCSPGATCSLNPS   90 (193)
Q Consensus        26 ~c-C~~g~~g~~~~c~~----~~~gg~~~~~~~~C~C~~g~~G~~C~~~~~~--------~~C~--~pC~~gg~C~~~~~   90 (193)
                      .| |++||.|..  |+.    +.++|.-..+.+.|.|++||+|.+|+...+.        +.|.  .+|.+++.|.  . 
T Consensus       186 ~c~C~~g~~G~~--C~~~C~~C~~~G~C~~~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C~--~-  260 (423)
T 2gy5_A          186 VRRCEAQKWGPE--CNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCL--P-  260 (423)
T ss_dssp             ECSSCTTEESTT--SCEECCCCCTTCEECTTTCCEECCTTEESTTSCEECCTTEESTTSCEECCSTTTTTTCCEEE--T-
T ss_pred             CCcCCCCCCCCC--CCCCCCCCCCCCEEECCCCcEeCCCCccCCCcccccCCCCCCCCcCccCCCCCCCCCCCEEC--C-
Confidence            37 999999997  874    5556632336789999999999999964220        2465  6898999995  4 


Q ss_pred             CceecccCCCCCCccccccccce
Q psy2060          91 GGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        91 ~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      ++|+|. |+++|.    |..|+.
T Consensus       261 ~~~~C~-C~~G~~----G~~C~~  278 (423)
T 2gy5_A          261 DPYGCS-CATGWK----GLQCNE  278 (423)
T ss_dssp             TTTEEE-CCBTCB----SGGGCB
T ss_pred             CCCeEE-eCCCcc----cccccC
Confidence            788999 999998    778775

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.64  E-value=2.5e-08  Score=55.85  Aligned_cols=35  Identities=26%  Similarity=0.708  Sum_probs=31.8

Q ss_pred             CCCC-CCCCCCcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          73 SDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        73 ~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      ++|. +||.++|+|++.. ++|+|. |+++|.    |..|+.
T Consensus         4 d~C~~~pC~ngg~C~~~~-~~~~C~-C~~G~~----G~~Ce~   39 (39)
T 1edm_B            4 DQCESNPCLNGGSCKDDI-NSYECW-CPFGFE----GKNCEL   39 (39)
T ss_dssp             CTTTTCCCCTTCEEEEET-TEEEEE-CCTTCC----STTSCC
T ss_pred             ccCCCCCCCCCCEeEcCC-CceEeE-CCCCCc----CCccCC
Confidence            3899 9999999999987 999999 999998    888863

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=98.64  E-value=1e-08  Score=67.90  Aligned_cols=49  Identities=27%  Similarity=0.613  Sum_probs=42.4

Q ss_pred             ccCCCCceeeCCCCCC----CCcccccCCCCCCC-CCCCCCcEEeeCCCCceecccCCCCCC
Q psy2060          47 HRTLDLLHDMGARYHW----GDTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGS  103 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~----G~~C~~~~~~~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~  103 (193)
                      .++.++|+|.|++||+    |..|+ +++  +|. +||.  ++|++.. ++|+|. || ++.
T Consensus        19 ~n~~g~y~C~C~~G~~~~~~g~~C~-did--eC~~~~C~--~~C~n~~-g~y~C~-C~-g~~   72 (87)
T 1z6c_A           19 KNIPGDFECECPEGYRYNLKSKSCE-DID--ECSENMCA--QLCVNYP-GGYTCY-CD-GKK   72 (87)
T ss_dssp             CCBTTBCCCSSSTTCEEETTTTEEE-CCC--HHHHSCCS--SEECCCS-SSCCEE-CC-SSS
T ss_pred             ECCCCCEEEECCCCceECCCCCcCC-CcC--eeCCCCCC--CEEEccC-CCEEEE-CC-CCc
Confidence            5788999999999999    88996 555  999 9997  6999998 999999 96 444

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.48  E-value=4.1e-07  Score=75.71  Aligned_cols=61  Identities=25%  Similarity=0.524  Sum_probs=22.9

Q ss_pred             ccCCCCceeeCCCCCC----CCcccccCCCCCCC--CCCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          47 HRTLDLLHDMGARYHW----GDTCETDITKSDCK--GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~----G~~C~~~~~~~~C~--~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      .+..++|.|.|++||+    |..| .+++  +|.  .+|.++  |++.. ++|+|. |++||.....+..|+..
T Consensus        18 ~~~~g~~~C~C~~G~~l~~~~~~C-~d~~--eC~~~~~C~~~--C~~~~-g~~~C~-C~~g~~l~~d~~~C~~~   84 (386)
T 3v65_B           18 QMIRGAVQCTCHTGYRLTEDGRTC-QDVN--ECAEEGYCSQG--CTNSE-GAFQCW-CEAGYELRPDRRSCKAL   84 (386)
T ss_dssp             -------------------------------------CCTTE--EC------CCEE-CCTTEEECTTSSCEEEC
T ss_pred             cCCCCCcEeECCCCceECCCCCcc-Cccc--eeCCcCcccCc--CCCCC-CCCeEE-ECCCceEcCCCCeECCc
Confidence            3667889999999998    9999 4555  997  899874  99988 999999 99998765567888753

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=98.45  E-value=1.2e-08  Score=60.95  Aligned_cols=44  Identities=16%  Similarity=0.237  Sum_probs=35.8

Q ss_pred             ceeeCCCCCCCCcccccCCCCCCCCCCCCCcEEeeC---CCCceecccCCCCCCcccccccccee
Q psy2060          53 LHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLN---PSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        53 ~~C~C~~g~~G~~C~~~~~~~~C~~pC~~gg~C~~~---~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      +.|.|++||+      .       +||.|||+|+..   ..++|.|. |+.+|.    |.+||..
T Consensus         3 ~~C~C~~g~~------~-------~pC~NGGtC~~~~~~~~~~y~C~-C~~Gf~----G~~Ce~~   49 (52)
T 3ca7_A            3 PTYKCPETFD------A-------WYCLNDAHCFAVKIADLPVYSCE-CAIGFM----GQRCEYK   49 (52)
T ss_dssp             CCBCCCHHHH------H-------HTSCTTCEEEEEEETTEEEEEEE-CCTTEE----STTSCEE
T ss_pred             eeeECCCCCc------C-------CcCCCCCEEecCccCCCCCEEEE-CCCCCc----CCCCccc
Confidence            5788988886      1       689999999963   22689999 999998    9999864

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A

Probab=98.45  E-value=1e-06  Score=73.56  Aligned_cols=69  Identities=20%  Similarity=0.270  Sum_probs=56.1

Q ss_pred             ccCCCcceEEec-CCCCCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEE
Q psy2060         116 RSFPKNSFLTFP-ALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLN  188 (193)
Q Consensus       116 ~sF~g~syl~~~-~~~~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~  188 (193)
                      ..|.+.+|+.+. .........|+|.|||..++|+|||.+  ....||++|+|.+|+  |+++|++|++...++
T Consensus       214 ~~F~g~gy~~~~~~~~~~~~~~is~~frT~~~~GlLl~~~--~~~~~~l~l~L~~G~--l~~~~~~g~~~~~~~  283 (394)
T 1dyk_A          214 TYFDGTGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVS--SQKMDGMGIEMIDEK--LMFHVDNGAGRFTAI  283 (394)
T ss_dssp             EEEEEEEEEECCSSBCCBSEEEEEEEEEESCSCEEEEEEE--CSSSCEEEEEEETTE--EEEEEESSSCCEEEE
T ss_pred             ceeCCCceeEEcCCcccCCceEEEEEEEeCCCCEEEEEec--CCCCCEEEEEEECCE--EEEEEECCCCcEEEE
Confidence            457788998764 233345678999999999999999985  346799999999999  999999998866554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.42  E-value=4.9e-08  Score=83.47  Aligned_cols=72  Identities=18%  Similarity=0.207  Sum_probs=30.3

Q ss_pred             ee-cCCCCccCCCCccee------ecCCccCCCCceeeCCCCCCCCcccccCCCCCCCCCCCCCcEEeeCCCCceecccC
Q psy2060          26 LS-GLPDNEGLEKRVQTF------VDGGHRTLDLLHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDC   98 (193)
Q Consensus        26 ~c-C~~g~~g~~~~c~~~------~~gg~~~~~~~~C~C~~g~~G~~C~~~~~~~~C~~pC~~gg~C~~~~~~~~~C~~C   98 (193)
                      .+ |.++|.|..  |+.+      .| |.- ...+.|.|++||+|..|+..    .|..+|.++|+|+..    ++|. |
T Consensus       378 p~~C~~~~~g~~--c~~~~C~~~C~n-G~C-~~~~~C~C~~G~~G~~C~~~----~C~~~C~~~g~C~~~----~~C~-C  444 (463)
T 2wg3_C          378 PEECRATVQPAQ--TLTSECSRLCRN-GYC-TPTGKCCCSPGWEGDFCRTA----KCEPACRHGGVCVRP----NKCL-C  444 (463)
T ss_dssp             CGGGCCCCCCCC--CCCCHHHHHCCS-EEE-CTTSCEEECTTEESTTSCEE----CC-----------------------
T ss_pred             cccCCCCCcCCC--CccccccCCCCC-Ccc-CCCCeECCCCCcCCCcCCcC----cCCCCCCCCCEECCC----CEEE-C
Confidence            36 999999996  7642      22 311 12358999999999999754    888899999999843    6899 9


Q ss_pred             CCCCCcccccccccee
Q psy2060          99 SLAGSYEHYDRLCRLR  114 (193)
Q Consensus        99 ~~g~~~~~~g~~C~~~  114 (193)
                      +++|.    |..|+..
T Consensus       445 ~~G~~----G~~C~~~  456 (463)
T 2wg3_C          445 KKGYL----GPQCEQV  456 (463)
T ss_dssp             ----------------
T ss_pred             CCCcc----cCCCCCC
Confidence            99999    9999864

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=98.41  E-value=1.6e-07  Score=83.69  Aligned_cols=74  Identities=18%  Similarity=0.183  Sum_probs=57.0

Q ss_pred             Ccee-cC----CCCccCCCCcceeec------------CCccCCCCceeeCCCCCCCCccc--ccCCCCCCC----CCCC
Q psy2060          24 PYLS-GL----PDNEGLEKRVQTFVD------------GGHRTLDLLHDMGARYHWGDTCE--TDITKSDCK----GVCS   80 (193)
Q Consensus        24 ~~~c-C~----~g~~g~~~~c~~~~~------------gg~~~~~~~~C~C~~g~~G~~C~--~~~~~~~C~----~pC~   80 (193)
                      .+.| |+    +||+|..  |+.+++            +|.-.  .+.|.|++||+|..|+  ...+  .|.    .+|.
T Consensus       503 ~g~C~C~~~~~~Gy~G~~--Ce~~~~~C~~~~~~~C~~~G~C~--~g~C~C~~Gy~G~~CeC~~~~~--~C~~~~g~~C~  576 (690)
T 3fcs_B          503 CGQCVCHSSDFGKITGKY--CECDDFSCVRYKGEMCSGHGQCS--CGDCLCDSDWTGYYCNCTTRTD--TCMSSNGLLCS  576 (690)
T ss_dssp             SSSEEECCCSSCCCBSTT--SCBCSSCCCBSSSSBGGGSEEEE--TTEEEECTTEESSSSCEECCCT--TTBCTTSSBTS
T ss_pred             CCeeEeecCCCCCeeCCC--cCcccCcCcCCCCCCCCCCCEec--CCeeECcCCCcCCCCccCCCCC--cccCCCCCCCC
Confidence            4678 99    9999998  975432            22111  2899999999999999  3433  887    5899


Q ss_pred             CCcEEeeCCCCceecccC-CCCCCccccccccce
Q psy2060          81 PGATCSLNPSGGYICDDC-SLAGSYEHYDRLCRL  113 (193)
Q Consensus        81 ~gg~C~~~~~~~~~C~~C-~~g~~~~~~g~~C~~  113 (193)
                      ++|+|+.   +  +|. | ++||.    |..|+.
T Consensus       577 ~~G~C~~---g--~C~-C~~~Gy~----G~~Ce~  600 (690)
T 3fcs_B          577 GRGKCEC---G--SCV-CIQPGSY----GDTCEK  600 (690)
T ss_dssp             SSCEEET---T--EEE-CCSTTCB----STTSCB
T ss_pred             CCCEEeC---C--EEE-CCCCCcc----CCCcCc
Confidence            9999974   2  899 9 99998    888886

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=98.41  E-value=9.1e-08  Score=85.22  Aligned_cols=70  Identities=23%  Similarity=0.273  Sum_probs=55.9

Q ss_pred             e-cCCCCccCCCCcceee--------c-------------CCccCCCCceeeCC----CCCCCCcccccCCCCCCC----
Q psy2060          27 S-GLPDNEGLEKRVQTFV--------D-------------GGHRTLDLLHDMGA----RYHWGDTCETDITKSDCK----   76 (193)
Q Consensus        27 c-C~~g~~g~~~~c~~~~--------~-------------gg~~~~~~~~C~C~----~g~~G~~C~~~~~~~~C~----   76 (193)
                      | |++||+|..  |+..+        +             +|.-.  .+.|.|+    +||+|..|+.+.+  .|.    
T Consensus       460 C~C~~Gy~G~~--Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~--~g~C~C~~~~~~Gy~G~~Ce~~~~--~C~~~~~  533 (690)
T 3fcs_B          460 CRCGPGWLGSQ--CECSEEDYRPSQQDECSPREGQPVCSQRGECL--CGQCVCHSSDFGKITGKYCECDDF--SCVRYKG  533 (690)
T ss_dssp             EEECTTCCSSS--SCCSCC------CCCCSSSSSSCGGGGSEEEC--SSSEEECCCSSCCCBSTTSCBCSS--CCCBSSS
T ss_pred             eEeCCCccCCc--eeeccCccCCccCCcCCCCCCCCCCCCCCEEE--CCeeEeecCCCCCeeCCCcCcccC--cCcCCCC
Confidence            8 999999998  87654        1             11111  3689999    9999999997655  898    


Q ss_pred             CCCCCCcEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          77 GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        77 ~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      .+|.++|+|+.     ++|. |++||.    |..|+
T Consensus       534 ~~C~~~G~C~~-----g~C~-C~~Gy~----G~~Ce  559 (690)
T 3fcs_B          534 EMCSGHGQCSC-----GDCL-CDSDWT----GYYCN  559 (690)
T ss_dssp             SBGGGSEEEET-----TEEE-ECTTEE----SSSSC
T ss_pred             CCCCCCCEecC-----CeeE-CcCCCc----CCCCc
Confidence            38999999974     6899 999998    88887

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.40  E-value=2.5e-07  Score=55.35  Aligned_cols=38  Identities=26%  Similarity=0.671  Sum_probs=32.6

Q ss_pred             CCC-C---CCCCCcEEe--eCCCCceecccCCCCCCccccccccceeccc
Q psy2060          74 DCK-G---VCSPGATCS--LNPSGGYICDDCSLAGSYEHYDRLCRLRARS  117 (193)
Q Consensus        74 ~C~-~---pC~~gg~C~--~~~~~~~~C~~C~~g~~~~~~g~~C~~~~~s  117 (193)
                      +|. .   ||.|||+|+  +.. ++|.|. |++||+    |..|+.....
T Consensus         5 ~C~~~~~~pC~ngg~C~~~~~~-~~~~C~-C~~G~~----G~~Ce~~~~~   48 (53)
T 1egf_A            5 GCPSSYDGYCLNGGVCMHIESL-DSYTCN-CVIGYS----GDRCQTRDLR   48 (53)
T ss_dssp             CCCTTSSCSSCSSCEEEEESSS-SCEEEE-CCTTCC----SSSSCCCSCC
T ss_pred             cCCCCCCCcCCCCcEEEeeCCC-CCEEEE-CCCCCc----CCcCCccCcc
Confidence            787 6   999999999  565 999999 999998    9999876543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.39  E-value=2.1e-07  Score=77.89  Aligned_cols=60  Identities=23%  Similarity=0.470  Sum_probs=51.3

Q ss_pred             ccCCCCceeeCCCCCC---CCcccccCCCCCCC--CCCCCCcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          47 HRTLDLLHDMGARYHW---GDTCETDITKSDCK--GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~---G~~C~~~~~~~~C~--~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      .++.++|.|.|++||.   |..|+ +++  +|.  .+|.+  .|++.. ++|.|. |++||.....+..|..
T Consensus        15 ~~~~~~y~C~C~~G~~~~~~~~C~-did--eC~~~~~C~~--~C~n~~-g~~~C~-C~~g~~~~~~~~~C~~   79 (400)
T 3p5b_L           15 NDLKIGYECLCPDGFQLVAQRRCE-DID--ECQDPDTCSQ--LCVNLE-GGYKCQ-CEEGFQLDPHTKACKA   79 (400)
T ss_dssp             EECSSSEEEECCTTEEECSSSCEE-ECC--CCSTTSSCSS--CCBCCS-SSCBCC-CCTTCCCCTTTSSCCC
T ss_pred             ECCCCCeEEECCCCCCcCCCCccc-Cch--hhhccCCCCC--ccCCCc-cceeee-ccccccccccccceee
Confidence            5788999999999998   89997 555  998  89976  899998 999999 9999987666677754

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=98.36  E-value=3e-07  Score=61.29  Aligned_cols=46  Identities=17%  Similarity=0.173  Sum_probs=36.4

Q ss_pred             CCCcee-cCCCCccCCCCcc-eeec---------CC--ccCC--CCceeeCCCCCCCCcccccCC
Q psy2060          22 FQPYLS-GLPDNEGLEKRVQ-TFVD---------GG--HRTL--DLLHDMGARYHWGDTCETDIT   71 (193)
Q Consensus        22 ~~~~~c-C~~g~~g~~~~c~-~~~~---------gg--~~~~--~~~~C~C~~g~~G~~C~~~~~   71 (193)
                      ...|.| |++||+  .  |+ +++|         ||  .+..  ++|.|.|++||+|.+|+.+++
T Consensus        29 ~~~y~C~C~~G~~--~--C~~~~~~~C~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~id   89 (91)
T 1tpg_A           29 NRVEYCWCNSGRA--Q--CHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR   89 (91)
T ss_dssp             SCEEEEECSSSCC--B--CCEECEEECSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCSS
T ss_pred             CCCcEeECCCCCc--c--cccCcCCcccCCCCCCCCEeecCCCCCCeEeECCCCCcCCcCCcCCC
Confidence            457889 999998  3  87 4443         56  5555  899999999999999998765

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=98.34  E-value=3.3e-07  Score=80.77  Aligned_cols=58  Identities=19%  Similarity=0.313  Sum_probs=47.9

Q ss_pred             ccCCC-Ccee-eCCCCCCC--CcccccCCCCCCC-CC--CCCCc---EEeeCCCCceecccCCCCCCccccccccc
Q psy2060          47 HRTLD-LLHD-MGARYHWG--DTCETDITKSDCK-GV--CSPGA---TCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        47 ~~~~~-~~~C-~C~~g~~G--~~C~~~~~~~~C~-~p--C~~gg---~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      .++.+ +|+| .|++||+|  ..|+ .++  +|. .|  |.+++   +|++.. ++|+|..|++||.    |..|+
T Consensus        18 ~n~~~Gsy~C~~C~~GytGdg~~Ce-DiD--EC~~~p~~C~~gg~~~~CvNt~-gsY~C~~C~~Gy~----G~~c~   85 (634)
T 1yo8_A           18 SSFPDGSWSCGFCPVGFLGNGTHCE-DLD--ECALVPDICFSTSKVPRCVNTQ-PGFHCLPCPPRYR----GNQPV   85 (634)
T ss_dssp             EECTTSCEEECCCCTTBCSCSSSCC-BCC--TTTTSCCCSCCCSSSCCEEECS-SSEEECCCCTTEE----ECCCE
T ss_pred             ecCCCCCeECCcCCCccCCCCCCcc-ccc--cccCCCCcccCCccccceeecc-CceecccCCCCcc----cCccc
Confidence            45554 4999 99999998  8997 555  999 77  99999   999998 9999955999998    55543

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=98.33  E-value=2.9e-07  Score=63.87  Aligned_cols=63  Identities=16%  Similarity=0.022  Sum_probs=43.3

Q ss_pred             cCCCCCCcee-cCCCCccCCCCcceeec--------CC-----ccCCCCceeeCCCCCC----CCcccccCCCCCCCCCC
Q psy2060          18 TNGPFQPYLS-GLPDNEGLEKRVQTFVD--------GG-----HRTLDLLHDMGARYHW----GDTCETDITKSDCKGVC   79 (193)
Q Consensus        18 ~~~~~~~~~c-C~~g~~g~~~~c~~~~~--------gg-----~~~~~~~~C~C~~g~~----G~~C~~~~~~~~C~~pC   79 (193)
                      .|.+ ..|.| |++||+|..  |+..++        ++     .++.++|+|.|++||+    |..|+....     .||
T Consensus        29 ~~~~-~~y~C~C~~G~~G~~--C~~~~~~~~C~~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~g~~C~~~~~-----~pC  100 (114)
T 1aut_L           29 IDGI-GSFSCDCRSGWEGRF--CQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVK-----FPC  100 (114)
T ss_dssp             CCCS-SCCCEEECTTEESTT--SCEECCSSSSSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEECSS-----SCT
T ss_pred             CCCC-CCcEeeCCCCCcCCC--cCcCCcCCcCcCCCCCCCCEeECCCCCEEeECCCCeeECCCCCccCcCcc-----cCC
Confidence            3443 56889 999999997  986532        22     6788999999999999    456653322     789


Q ss_pred             CCCcEEeeC
Q psy2060          80 SPGATCSLN   88 (193)
Q Consensus        80 ~~gg~C~~~   88 (193)
                      .+++.|++.
T Consensus       101 ~~~~~~i~~  109 (114)
T 1aut_L          101 GRPWKRMEK  109 (114)
T ss_dssp             TCCC-----
T ss_pred             CCCCccCCC
Confidence            998888764

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.31  E-value=3.3e-07  Score=52.90  Aligned_cols=35  Identities=23%  Similarity=0.532  Sum_probs=30.0

Q ss_pred             CCC-C---CCCCCcEEe--eCCCCceecccCCCCCCcccccccccee
Q psy2060          74 DCK-G---VCSPGATCS--LNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        74 ~C~-~---pC~~gg~C~--~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      +|. .   ||.|||+|+  +.. ++|+|. |++||+    |..|+..
T Consensus         2 ~C~~~~~~pC~ngg~C~~~~~~-~~~~C~-C~~G~~----G~~Ce~~   42 (45)
T 1a3p_A            2 GXPSSYDGYCLNGGVXMHIESL-DSYTCN-CVIGYS----GDRCQTR   42 (45)
T ss_dssp             CCTTCCSSCCSSSCEEEECTTT-SSEEEE-CCTTEE----TTTTCEE
T ss_pred             CcccCCCCCCCCCCEEEeecCC-CCEEEE-cCCCCc----CCcCCcc
Confidence            566 6   999999998  444 899999 999998    9999865

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=98.27  E-value=2.4e-07  Score=68.71  Aligned_cols=15  Identities=13%  Similarity=0.246  Sum_probs=8.1

Q ss_pred             eeeCCCCCCCCcccc
Q psy2060          54 HDMGARYHWGDTCET   68 (193)
Q Consensus        54 ~C~C~~g~~G~~C~~   68 (193)
                      .|.|++||+|..|+.
T Consensus        51 ~C~C~~G~~G~~C~~   65 (169)
T 2vj2_A           51 NKTCMEGWMGPECNR   65 (169)
T ss_dssp             CEEECTTEESTTSCE
T ss_pred             eeECCCCCcCCCCCC
Confidence            345555555555553

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*

Probab=98.26  E-value=3e-06  Score=71.42  Aligned_cols=67  Identities=12%  Similarity=0.122  Sum_probs=51.3

Q ss_pred             ccCCCcceEEecCCC----------CCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEE-------EEEE
Q psy2060         116 RSFPKNSFLTFPALK----------QRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSV-------QFSW  178 (193)
Q Consensus       116 ~sF~g~syl~~~~~~----------~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l-------~~~~  178 (193)
                      ..|.+.+|+.|+...          ....+.|+|.|||..++|+|||.+......||++|+|.+|+  +       ++.+
T Consensus       222 ~~F~g~s~~~~~~~~~~lp~~~~~~~~~~~~is~~fRT~~~~GlLl~~~~~~~~~d~l~l~L~~G~--le~~~~~~~l~~  299 (422)
T 1h30_A          222 SFYPGSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWAPDLRAVPLSVALVDYH--STKKLKKQLVVL  299 (422)
T ss_dssp             EEECSSCCEEECCCCBC--------CCBCEEEEEEEEESSSCEEEEEEEEGGGTEEEEEEEEESCC-------CCCEEEE
T ss_pred             ceECCCeEEEEecCccccccccccccccceEEEEEEecCCCCEEEEEecCCCcCCCcEEEEEEcCc--cccccccceEEE
Confidence            468889999886422          12357899999999999999998631122799999999999  7       6888


Q ss_pred             eCCCce
Q psy2060         179 SLGSEV  184 (193)
Q Consensus       179 ~~g~g~  184 (193)
                      +.+++.
T Consensus       300 ~~~~g~  305 (422)
T 1h30_A          300 AVEHTA  305 (422)
T ss_dssp             EETTEE
T ss_pred             EeCCee
Confidence            888776

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=98.23  E-value=3.2e-07  Score=66.05  Aligned_cols=47  Identities=26%  Similarity=0.417  Sum_probs=40.8

Q ss_pred             CceeeCCCCCCC---------CcccccCCCCCCC-C---CCCCCcEEeeCCCCceecccCCCCCC
Q psy2060          52 LLHDMGARYHWG---------DTCETDITKSDCK-G---VCSPGATCSLNPSGGYICDDCSLAGS  103 (193)
Q Consensus        52 ~~~C~C~~g~~G---------~~C~~~~~~~~C~-~---pC~~gg~C~~~~~~~~~C~~C~~g~~  103 (193)
                      .|.|.|++||+|         ..|+ +++  +|. .   ||.++++|++.. ++|+|. |++||.
T Consensus        18 ~~~C~C~~G~~g~~~~~~~~~~~C~-did--eC~~~~~~~C~~~~~C~n~~-g~y~C~-C~~Gy~   77 (143)
T 2bou_A           18 ATACRCNPGFSSFSEIITTPMETCD-DIN--ECATLSKVSCGKFSDCWNTE-GSYDCV-CSPGYE   77 (143)
T ss_dssp             SSCEEECTTEECSSSSBCSTTCCCE-ECC--GGGC----CCCTTEEEEECS-SCEEEE-ECTTEE
T ss_pred             CCEEeCCCCCcCccccccCCCCcCC-ccc--cccCCCCCCCCCCCEEEcCC-CCeEeE-CCCCcc
Confidence            499999999998         5785 444  998 4   899999999998 999999 999998

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=98.23  E-value=4.5e-07  Score=80.65  Aligned_cols=74  Identities=18%  Similarity=0.175  Sum_probs=55.8

Q ss_pred             ee-cC------CCCccCCCCcceeec--------------CCccCCCCceeeCCCCCCCCcccccCCCCCCC-C---CCC
Q psy2060          26 LS-GL------PDNEGLEKRVQTFVD--------------GGHRTLDLLHDMGARYHWGDTCETDITKSDCK-G---VCS   80 (193)
Q Consensus        26 ~c-C~------~g~~g~~~~c~~~~~--------------gg~~~~~~~~C~C~~g~~G~~C~~~~~~~~C~-~---pC~   80 (193)
                      .| |+      +||+|..  |+.+.+              +|.-.  ...|.|++||+|..|+...+.+.|. .   +|.
T Consensus       494 ~C~C~~~~~~~~G~~G~~--Ce~~~~~C~~~~~~~C~~~~~G~C~--~g~C~C~~G~~G~~Cec~~~~~~C~~~~g~~Cs  569 (687)
T 3k6s_B          494 QCLCHTSDVPGKLIYGQY--CECDTINCERYNGQVCGGPGRGLCF--CGKCRCHPGFEGSACQCERTTEGCLNPRRVECS  569 (687)
T ss_dssp             EEEECCCCSTTCCEESTT--SCEESSCSCEETTEETSHHHHEEEE--TTEEEECTTCCSTTSCSCCSSCTTBCTTCSBTS
T ss_pred             EEEcCCCCCCCCCccccc--cccccccccCCCCcCcCCCCCCeEE--CCEEEcCCCCcCCCCccCCCCCCCCCCCCCCCC
Confidence            68 99      9999998  984332              11101  1389999999999999543224887 4   899


Q ss_pred             CCcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          81 PGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        81 ~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      ++|+|+.     .+|. |++||.    |..|+.
T Consensus       570 ~~G~C~~-----g~C~-C~~Gy~----G~~Ce~  592 (687)
T 3k6s_B          570 GRGRCRC-----NVCE-CHSGYQ----LPLCQE  592 (687)
T ss_dssp             SSCCBCS-----SCBC-CSTTCC----TTTTCC
T ss_pred             CCCcCCC-----CEEE-CCCCCc----CCCCCC
Confidence            9999974     3699 999998    888886

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=98.18  E-value=4.3e-07  Score=56.26  Aligned_cols=35  Identities=26%  Similarity=0.704  Sum_probs=30.8

Q ss_pred             CCC-CCCCCCcEEee-----CCCCceecccCCCCCCcccccccccee
Q psy2060          74 DCK-GVCSPGATCSL-----NPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        74 ~C~-~pC~~gg~C~~-----~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      +|. +||.|||+|++     .. ++|.|. |++||+    |..|+..
T Consensus         8 ~C~~~pC~ngG~C~~~~~~~~~-~~y~C~-C~~Gf~----G~~Ce~~   48 (63)
T 1hae_A            8 EKEKTFCVNGGECFMVKDLSNP-SRYLCK-CQPGFT----GARCTEN   48 (63)
T ss_dssp             HHHHTTSCTTCEEEEEESSSSS-CCEEEE-CCTTEE----STTSCEE
T ss_pred             CCCCCcCCCCcEEecCCccCCC-CCEEEE-CCCCCc----CCccCcC
Confidence            677 99999999997     44 899999 999998    9999865

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=98.08  E-value=2.4e-06  Score=61.51  Aligned_cols=54  Identities=24%  Similarity=0.286  Sum_probs=41.1

Q ss_pred             CCcee-cCCCCccCCCCcceeec---------CC-----ccCCC-CceeeCCCCCC----CCcccccCCCCCCC-CCC
Q psy2060          23 QPYLS-GLPDNEGLEKRVQTFVD---------GG-----HRTLD-LLHDMGARYHW----GDTCETDITKSDCK-GVC   79 (193)
Q Consensus        23 ~~~~c-C~~g~~g~~~~c~~~~~---------gg-----~~~~~-~~~C~C~~g~~----G~~C~~~~~~~~C~-~pC   79 (193)
                      +.|.| |++||+|..  |+.+++         ++     .++.+ +|+|.|++||+    |.+|+.... .+|. .|+
T Consensus        66 g~y~C~C~~G~~G~~--C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~C~~~~e-~pCg~~p~  140 (142)
T 2c4f_L           66 QSYICFCLPAFEGRN--CETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE-YPCGKIPI  140 (142)
T ss_dssp             TEEEEECCTTEESTT--SCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEECTTSSCEEESSS-SCTTCCTT
T ss_pred             CCEEeeCCCCccCCc--cccCccccccccCCCCCccCEeECCCCCCEEEECCCCceECCCCCCCCCCCc-cCCCCCCC
Confidence            46889 999999997  987432         33     56778 99999999999    999986543 3565 554

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=98.06  E-value=1.1e-06  Score=67.80  Aligned_cols=73  Identities=19%  Similarity=0.318  Sum_probs=55.9

Q ss_pred             cee-cCCCCccCCCCcceeec----------------------CCccCCCCceeeCCCC------CCCCcccccCCCCCC
Q psy2060          25 YLS-GLPDNEGLEKRVQTFVD----------------------GGHRTLDLLHDMGARY------HWGDTCETDITKSDC   75 (193)
Q Consensus        25 ~~c-C~~g~~g~~~~c~~~~~----------------------gg~~~~~~~~C~C~~g------~~G~~C~~~~~~~~C   75 (193)
                      ..| |.+||+|..  |+...+                      +|.-.  ...|.|++|      |+|..|+.+..  .|
T Consensus       107 g~C~C~~G~~G~~--Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~--~g~C~C~~gw~~~~~~~G~~Ce~~~~--~C  180 (217)
T 2p28_B          107 GICRCDTGYIGKN--CECQTQGRSSQELEGSCRKDNNSIICSGLGDCV--CGQCLCHTSDVPGKLIYGQYCECDTI--NC  180 (217)
T ss_dssp             TEEEECTTEESTT--SCEECCCCC-GGGGGGGBSSTTSCBGGGTEEEE--TTEEEECCCCSTTCCEESTTSCEESS--CS
T ss_pred             CEEECCCCccCCc--ccccCcccccccCCCcCCCCCCCCCCCCCCEEe--CCceECCCCCCCcccEECCCcccCCc--cC
Confidence            358 999999998  885432                      11000  247999999      69999997654  89


Q ss_pred             C-C---CCCCC--cEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          76 K-G---VCSPG--ATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        76 ~-~---pC~~g--g~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      . .   +|.++  |+|..   +  +|. |.+||.    |..|+.
T Consensus       181 ~~~~g~~C~~~~~G~C~~---g--~C~-C~~G~~----G~~C~~  214 (217)
T 2p28_B          181 ERYNGQVCGGPGRGLCFC---G--KCR-CHPGFE----GSACQH  214 (217)
T ss_dssp             CEETTEETTCTTTEEEET---T--EEE-ECTTEE----STTSCE
T ss_pred             CCCCCCCCCCCCCcEEeC---C--eeE-CCCCCc----cCCcCC
Confidence            8 4   89988  99983   2  799 999998    999975

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=98.05  E-value=8e-07  Score=53.10  Aligned_cols=34  Identities=24%  Similarity=0.582  Sum_probs=29.4

Q ss_pred             CCCCCCcEEe--eCCCCceecccCCCCCCccccccccceecc
Q psy2060          77 GVCSPGATCS--LNPSGGYICDDCSLAGSYEHYDRLCRLRAR  116 (193)
Q Consensus        77 ~pC~~gg~C~--~~~~~~~~C~~C~~g~~~~~~g~~C~~~~~  116 (193)
                      +||.|||+|+  +.. ++|.|. |++||+    |.+|+....
T Consensus        12 ~pC~nGG~C~~~~~~-~~~~C~-C~~Gyt----G~~Ce~~~~   47 (53)
T 1nql_B           12 GYCLHDGVCMYIEAL-DKYACN-CVVGYI----GERCQYRDL   47 (53)
T ss_dssp             CEECTTCEEEEETTT-TEEEEE-ECTTEE----STTSCEECS
T ss_pred             CCCCCCeEEeeecCC-CCEEEe-cCCCCc----CCCCCcCCc
Confidence            8999999998  444 899999 999999    999987643

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=98.04  E-value=1.1e-06  Score=66.59  Aligned_cols=53  Identities=23%  Similarity=0.249  Sum_probs=25.1

Q ss_pred             CCcee-cCCCCccCCCCcceee-c------CC-----ccCCCCceeeCCCCCC----CCcccccCCCCCCCCCCCCC
Q psy2060          23 QPYLS-GLPDNEGLEKRVQTFV-D------GG-----HRTLDLLHDMGARYHW----GDTCETDITKSDCKGVCSPG   82 (193)
Q Consensus        23 ~~~~c-C~~g~~g~~~~c~~~~-~------gg-----~~~~~~~~C~C~~g~~----G~~C~~~~~~~~C~~pC~~g   82 (193)
                      +.|.| |++||+|..  |+.++ |      ++     .+..++|.|.|++||+    |..|+....     .||.+.
T Consensus        61 g~y~C~C~~Gf~G~~--Ce~~i~deC~~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~dG~~C~~~~~-----~PC~~~  130 (195)
T 1nfu_B           61 GEYTCTCLEGFEGKN--CELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP-----YPCGKQ  130 (195)
T ss_dssp             ----------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSS-----SCTTCC
T ss_pred             CCeeEeCCCCceecc--ccccccccccCCCCCCCCEeECCCCCeEEECCCCceeCCCCCccccCCC-----CCCCCC
Confidence            46889 999999997  98765 3      12     5778899999999999    899986543     566653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.00  E-value=6.5e-06  Score=73.66  Aligned_cols=60  Identities=23%  Similarity=0.470  Sum_probs=50.6

Q ss_pred             ccCCCCceeeCCCCCC---CCcccccCCCCCCC--CCCCCCcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          47 HRTLDLLHDMGARYHW---GDTCETDITKSDCK--GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~---G~~C~~~~~~~~C~--~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      .++.++|.|.|++||.   |..|+ +++  +|.  .+|.+  .|++.. ++|+|. |++||.+...+..|..
T Consensus       309 ~~~~~~~~C~C~~G~~~~~~~~C~-did--eC~~~~~C~~--~C~n~~-g~y~C~-C~~G~~~~~~~~~C~~  373 (699)
T 1n7d_A          309 NDLKIGYECLCPDGFQLVAQRRCE-DID--ECQDPDTCSQ--LCVNLE-GGYKCQ-CEEGFQLDPHTKACKA  373 (699)
T ss_dssp             CCCTTCCCCCCCSSSCCCSSSCCC-CCC--CCSSSSSCTT--TCCBCS-SCBCCC-CCSSCBCCSSCCCCBC
T ss_pred             ccCCCCcEEeCCCCeEcCCCCccc-Ccc--ccCCCCcccc--ccccCC-CCeeee-eecccccCCCCCcccc
Confidence            6778999999999999   78898 555  998  78964  899998 999999 9999987655677754

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=97.98  E-value=1.2e-06  Score=61.13  Aligned_cols=61  Identities=15%  Similarity=0.174  Sum_probs=42.7

Q ss_pred             ccC-CCCceeeCCCCCCCCcccccCCCCCCC-CCCCCCcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          47 HRT-LDLLHDMGARYHWGDTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        47 ~~~-~~~~~C~C~~g~~G~~C~~~~~~~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      .++ .++|.|.|++||+|..++...=.++|. .+|.  ++|++ . ++|+|. |++||.+.. |..|+.
T Consensus        17 ~~~~~g~y~C~C~~Gy~g~~~~~~~C~~~C~~~~C~--~~C~~-~-~~y~C~-C~~Gy~~~~-g~~C~d   79 (118)
T 1dx5_I           17 QPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACP--ADCDP-N-TQASCE-CPEGYILDD-GFICTD   79 (118)
T ss_dssp             EECSSSCEEEECCTTEEEETTEEEEEEECCCSSEEE--CEECT-T-STTCEE-CCTTEEEET-TTEEEE
T ss_pred             CCCCCCCEEeECCCCccccCCCCCccccccCCCCCC--CcccC-C-CCeEeE-CCCCccCCC-CCcccc
Confidence            466 789999999999998653220001455 6665  68987 5 899999 999987432 567753

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=97.96  E-value=1.7e-06  Score=53.20  Aligned_cols=36  Identities=28%  Similarity=0.604  Sum_probs=30.8

Q ss_pred             CCCC-CCCCCC--cEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          73 SDCK-GVCSPG--ATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        73 ~~C~-~pC~~g--g~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      ++|. +||.+|  |+|++.. ++|.|. |++||..   |..|+.
T Consensus        12 d~C~snPC~nga~gtC~~~~-g~y~C~-C~~Gy~~---G~~C~~   50 (61)
T 2k2s_B           12 AACSSNPCGPEAAGTCKETN-SGYICR-CNQGYRI---SLDGTG   50 (61)
T ss_dssp             CHHHHCSSCSSSCCEEEECS-SEEEEE-CCTTEEE---EECSSS
T ss_pred             CcCcCCCCcCCCccccccCC-CceEeE-CCCCCcc---CCCCCC
Confidence            4899 999999  8999998 999999 9999862   567764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.91  E-value=0.00015  Score=65.80  Aligned_cols=60  Identities=23%  Similarity=0.470  Sum_probs=49.9

Q ss_pred             ccCCCCceeeCCCCCC---CCcccccCCCCCCC--CCCCCCcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          47 HRTLDLLHDMGARYHW---GDTCETDITKSDCK--GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~---G~~C~~~~~~~~C~--~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      .++.++|.|.|++||.   |..|+ +++  +|.  .+|.  ..|++.. ++|+|. |++||.....+..|..
T Consensus       327 ~~~~~~y~C~C~~Gy~l~~g~~C~-did--eC~~~~~C~--~~C~n~~-gsy~C~-C~~Gy~l~~~~~~C~~  391 (791)
T 3m0c_C          327 NDLKIGYECLCPDGFQLVAQRRCE-DID--ECQDPDTCS--QLCVNLE-GGYKCQ-CEEGFQLDPHTKACKA  391 (791)
T ss_dssp             EECSBSEEEECCTTCEEETTTEEE-CCC--CCSSSSSCT--TTCCBCS-SCBCCC-CCSSEECCSSCCCCEE
T ss_pred             cCCCCCcccCCCCCCccCCCCccc-cCc--ccCCCCCCC--CeeecCC-CCceee-cCCCCEeCCCCceeee
Confidence            6778999999999995   88998 554  998  6775  4899998 999999 9999986656777865

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=97.90  E-value=1.4e-06  Score=77.44  Aligned_cols=73  Identities=19%  Similarity=0.351  Sum_probs=55.2

Q ss_pred             Ccee-cCCCCccCCCCcceeec----------------------CCccCCCCceeeCC------CCCCCCcccccCCCCC
Q psy2060          24 PYLS-GLPDNEGLEKRVQTFVD----------------------GGHRTLDLLHDMGA------RYHWGDTCETDITKSD   74 (193)
Q Consensus        24 ~~~c-C~~g~~g~~~~c~~~~~----------------------gg~~~~~~~~C~C~------~g~~G~~C~~~~~~~~   74 (193)
                      ...| |.+||+|..  |+...+                      +|.-.  ...|.|+      +||+|..|+.+..  .
T Consensus       445 ~g~C~C~~Gy~G~~--Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~--~G~C~C~~~~~~~~G~~G~~Ce~~~~--~  518 (687)
T 3k6s_B          445 CGICRCDTGYIGKN--CECQTQGRSSQELEGSCRKDNNSIICSGLGDCV--CGQCLCHTSDVPGKLIYGQYCECDTI--N  518 (687)
T ss_dssp             SSSEEECSSEESTT--SCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEE--TTEEEECCCCSTTCCEESTTSCEESS--C
T ss_pred             CCEeEcCCCCcCCc--ccccCCcCCccccCCCCCCCCCCCcCCCCCEEe--CCEEEcCCCCCCCCCccccccccccc--c
Confidence            3458 999999998  984332                      11000  1389999      9999999997654  8


Q ss_pred             CC----CCCCC--CcEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          75 CK----GVCSP--GATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        75 C~----~pC~~--gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      |.    .+|.+  +|+|..   +  +|. |++||.    |..|+
T Consensus       519 C~~~~~~~C~~~~~G~C~~---g--~C~-C~~G~~----G~~Ce  552 (687)
T 3k6s_B          519 CERYNGQVCGGPGRGLCFC---G--KCR-CHPGFE----GSACQ  552 (687)
T ss_dssp             SCEETTEETSHHHHEEEET---T--EEE-ECTTCC----STTSC
T ss_pred             ccCCCCcCcCCCCCCeEEC---C--EEE-cCCCCc----CCCCc
Confidence            98    37998  899983   2  799 999998    88887

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=97.88  E-value=6.5e-07  Score=53.27  Aligned_cols=39  Identities=13%  Similarity=0.049  Sum_probs=30.3

Q ss_pred             ee-cCCCCccCCCCcceeecCC--cc----CCCCceeeCCCCCCCCccccc
Q psy2060          26 LS-GLPDNEGLEKRVQTFVDGG--HR----TLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        26 ~c-C~~g~~g~~~~c~~~~~gg--~~----~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      .| |++||+...     +.|||  .+    ..++|.|.|++||+|.+|+..
T Consensus         4 ~C~C~~g~~~~p-----C~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~~   49 (52)
T 3ca7_A            4 TYKCPETFDAWY-----CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK   49 (52)
T ss_dssp             CBCCCHHHHHHT-----SCTTCEEEEEEETTEEEEEEECCTTEESTTSCEE
T ss_pred             eeECCCCCcCCc-----CCCCCEEecCccCCCCCEEEECCCCCcCCCCccc
Confidence            37 999998544     45777  32    356899999999999999864

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=97.87  E-value=3.2e-06  Score=60.23  Aligned_cols=46  Identities=24%  Similarity=0.253  Sum_probs=21.3

Q ss_pred             CCcee-cCCCCccCCCCcceee-c------CC-----ccCCCCceeeCCCCCC----CCcccccC
Q psy2060          23 QPYLS-GLPDNEGLEKRVQTFV-D------GG-----HRTLDLLHDMGARYHW----GDTCETDI   70 (193)
Q Consensus        23 ~~~~c-C~~g~~g~~~~c~~~~-~------gg-----~~~~~~~~C~C~~g~~----G~~C~~~~   70 (193)
                      +.|.| |++||+|..  |+..+ |      ++     .++.++|.|.|++||+    |.+|+...
T Consensus        61 ~~y~C~C~~G~~G~~--C~~~i~d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~l~~~g~~C~~~~  123 (134)
T 2vh0_B           61 GEYTCTCLEGFEGKN--CELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG  123 (134)
T ss_dssp             ----------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESS
T ss_pred             CCEEeeCCCCccCCc--cccCCCCccccCCCCCCCEeECCCCCEEEECCCCcEECCCCCccCcCC
Confidence            46889 999999997  98755 3      22     5778899999999999    99998654

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=97.83  E-value=8e-06  Score=70.76  Aligned_cols=58  Identities=17%  Similarity=0.249  Sum_probs=15.6

Q ss_pred             CCceeeCCCCCCCCccccc--------CCCCCCC-CCCCCCcEEeeCC-CCceecccCCCCCCccccccccce
Q psy2060          51 DLLHDMGARYHWGDTCETD--------ITKSDCK-GVCSPGATCSLNP-SGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        51 ~~~~C~C~~g~~G~~C~~~--------~~~~~C~-~pC~~gg~C~~~~-~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      ..+.|.|++||+|.+|+.-        .+.+.|. .+|.+++.|...- ...++|. |++||.    |..|++
T Consensus       458 ~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~-C~~G~~----G~~Ceq  525 (525)
T 4aqs_A          458 ETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCS-CLPHMI----GRQCNE  525 (525)
T ss_dssp             TTCCBCBCTTCCSTTTCC-------------------------------------------------------
T ss_pred             CCCEEECCCCCcCCCcccCCCCccCCCCCCCCCcCCCCCCCCccCCccCCCCCeeE-CCCCCc----CCCCCC
Confidence            4568999999999999741        1123688 8899988876541 1455899 999999    999974

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=97.83  E-value=8.8e-06  Score=47.02  Aligned_cols=32  Identities=19%  Similarity=0.423  Sum_probs=27.3

Q ss_pred             CCCCCCcEEeeCC-CCceecccCCCCCCcccccccccee
Q psy2060          77 GVCSPGATCSLNP-SGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        77 ~pC~~gg~C~~~~-~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      +||.| |+|++.. .++|.|. |++||+    |.+|+..
T Consensus        12 ~pC~n-G~C~~~~~~~~~~C~-C~~Gyt----G~~Ce~~   44 (46)
T 1k36_A           12 GYCLH-GQCIYLVDMSQNYCR-CEVGYT----GVRCEHF   44 (46)
T ss_dssp             SSCSS-EEEEEETTTTEEEEE-ECTTCS----STTSCCC
T ss_pred             CCCCC-CEeeccCCCCCEEEE-CCCCCc----cCCCCcc
Confidence            79999 7999753 2689999 999999    9999864

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=97.83  E-value=6.1e-06  Score=49.55  Aligned_cols=24  Identities=13%  Similarity=0.094  Sum_probs=19.8

Q ss_pred             cCCCCceeeCCCCCCCCcccccCC
Q psy2060          48 RTLDLLHDMGARYHWGDTCETDIT   71 (193)
Q Consensus        48 ~~~~~~~C~C~~g~~G~~C~~~~~   71 (193)
                      +..++|+|.|++||+|.+||..+.
T Consensus        29 d~~~~y~C~C~~g~~G~~CE~~v~   52 (55)
T 3u7u_G           29 SNPSRYLCKCPNEFTGDRCQNYVM   52 (55)
T ss_dssp             --CCCEEEEECTTEESTTSCEECC
T ss_pred             CCCCCEeEeCCCCCcCCCcCccCc
Confidence            456799999999999999998763

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=97.73  E-value=3.6e-06  Score=61.74  Aligned_cols=60  Identities=20%  Similarity=0.252  Sum_probs=40.8

Q ss_pred             ccCCCCceeeCCCCCC----CCcccccCCCCCCC---CCC--CCCcEEeeCCCC----ceecccCCCCCCccccccccc
Q psy2060          47 HRTLDLLHDMGARYHW----GDTCETDITKSDCK---GVC--SPGATCSLNPSG----GYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~----G~~C~~~~~~~~C~---~pC--~~gg~C~~~~~~----~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      .++.++|+|.|++||+    |..|+ +++.++|.   .+|  .++++|++.. +    +|+|. |++||..   +..|+
T Consensus        18 ~n~~gsy~C~C~~Gy~~~~~g~~C~-d~~~~~C~~~~~~c~~~~~~~C~~~~-~~~~~~~~C~-C~~G~~~---~~~C~   90 (162)
T 1uzk_A           18 VNTPGSYICDCPPDFELNPTRVGCV-DTRSGNCYLDIRPRGDNGDTACSNEI-GVGVSKASCC-CSLGKAW---GTPCE   90 (162)
T ss_dssp             EEETTEEEEECCTTCEECTTSSBEE-CCCCEEEEEEC----------CEEEE-EEEECHHHHH-TTTCCEE---TTTTE
T ss_pred             ECCCCCEEEeCCCCCeECCCCCccc-CCCCCcccCCCcccCCCCCCcccCCc-CCcccCceee-CCCCCCc---CCCcc
Confidence            6888999999999998    89998 44312387   345  4678999875 5    89999 9999874   55565

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=97.70  E-value=2.1e-05  Score=45.10  Aligned_cols=29  Identities=28%  Similarity=0.309  Sum_probs=23.6

Q ss_pred             eecCC--c--cCCCCceeeCCCCCCCCcccccC
Q psy2060          42 FVDGG--H--RTLDLLHDMGARYHWGDTCETDI   70 (193)
Q Consensus        42 ~~~gg--~--~~~~~~~C~C~~g~~G~~C~~~~   70 (193)
                      +.|||  .  +..++|+|.|++||+|.+|+..+
T Consensus        11 C~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~   43 (45)
T 1a3p_A           11 CLNGGVXMHIESLDSYTCNCVIGYSGDRCQTRD   43 (45)
T ss_dssp             CSSSCEEEECTTTSSEEEECCTTEETTTTCEEC
T ss_pred             CCCCCEEEeecCCCCEEEEcCCCCcCCcCCccc
Confidence            34566  3  67789999999999999999765

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=97.68  E-value=3.1e-05  Score=50.78  Aligned_cols=50  Identities=10%  Similarity=-0.104  Sum_probs=37.0

Q ss_pred             ccCCCCCCcee-cCCCCc----cCCCCcceeec-------CC--ccCCCCceeeCCCCCCCCcccccCC
Q psy2060          17 LTNGPFQPYLS-GLPDNE----GLEKRVQTFVD-------GG--HRTLDLLHDMGARYHWGDTCETDIT   71 (193)
Q Consensus        17 ~~~~~~~~~~c-C~~g~~----g~~~~c~~~~~-------gg--~~~~~~~~C~C~~g~~G~~C~~~~~   71 (193)
                      +.|.+ +.|.| |++||+    |..  |+ ++|       .+  .++.++|.|.|+ |+.|..|+.+..
T Consensus        18 C~n~~-g~y~C~C~~G~~~~~~g~~--C~-dideC~~~~C~~~C~n~~g~y~C~C~-g~~G~~~~~~~~   81 (87)
T 1z6c_A           18 CKNIP-GDFECECPEGYRYNLKSKS--CE-DIDECSENMCAQLCVNYPGGYTCYCD-GKKGFKLAQDQK   81 (87)
T ss_dssp             CCCBT-TBCCCSSSTTCEEETTTTE--EE-CCCHHHHSCCSSEECCCSSSCCEECC-SSSCCBCCTTSS
T ss_pred             eECCC-CCEEEECCCCceECCCCCc--CC-CcCeeCCCCCCCEEEccCCCEEEECC-CCcCCcccCCCC
Confidence            34544 46889 999999    554  85 555       23  788999999998 888888876543

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=97.62  E-value=2.9e-05  Score=50.37  Aligned_cols=45  Identities=13%  Similarity=-0.054  Sum_probs=33.3

Q ss_pred             ccCCCCCCcee-cCCCCc--cCCCCcceeec---------CC--ccCCCCceeeCCCCCCCCc
Q psy2060          17 LTNGPFQPYLS-GLPDNE--GLEKRVQTFVD---------GG--HRTLDLLHDMGARYHWGDT   65 (193)
Q Consensus        17 ~~~~~~~~~~c-C~~g~~--g~~~~c~~~~~---------gg--~~~~~~~~C~C~~g~~G~~   65 (193)
                      +.|.+ +.|.| |++||+  |..  |+ ++|         .|  .++.++|.|.|++||+|..
T Consensus        19 C~n~~-g~y~C~C~~Gy~~~g~~--C~-dideC~~~~~C~~~~C~n~~g~y~C~C~~G~~g~~   77 (82)
T 1emn_A           19 CINTD-GSYRCECPFGYILAGNE--CV-DTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGP   77 (82)
T ss_dssp             ECCCS-SCCCEECCTTEEEETTE--EE-ECCGGGTCCTTSSSCEEECSSSEEECCSSSSCCCS
T ss_pred             EEecC-CCEEEECCCCeECCCCc--cC-CcccccCCCCCCCCEeECCCCCEEeECCCCeEeCC
Confidence            44554 46889 999998  654  74 444         23  7888999999999999753

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=97.61  E-value=5.7e-05  Score=44.85  Aligned_cols=29  Identities=28%  Similarity=0.309  Sum_probs=24.1

Q ss_pred             eecCC--c--cCCCCceeeCCCCCCCCcccccC
Q psy2060          42 FVDGG--H--RTLDLLHDMGARYHWGDTCETDI   70 (193)
Q Consensus        42 ~~~gg--~--~~~~~~~C~C~~g~~G~~C~~~~   70 (193)
                      +.|||  .  +..++|.|.|++||+|.+|+..+
T Consensus        14 C~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~   46 (53)
T 1egf_A           14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD   46 (53)
T ss_dssp             SCSSCEEEEESSSSCEEEECCTTCCSSSSCCCS
T ss_pred             CCCCcEEEeeCCCCCEEEECCCCCcCCcCCccC
Confidence            44566  4  67889999999999999999765

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=97.60  E-value=2.5e-05  Score=51.09  Aligned_cols=41  Identities=20%  Similarity=0.016  Sum_probs=30.9

Q ss_pred             CCcee-cCCCCccC---CCCcceeec----------CC--ccCCCCceeeCCCCCCCC
Q psy2060          23 QPYLS-GLPDNEGL---EKRVQTFVD----------GG--HRTLDLLHDMGARYHWGD   64 (193)
Q Consensus        23 ~~~~c-C~~g~~g~---~~~c~~~~~----------gg--~~~~~~~~C~C~~g~~G~   64 (193)
                      +.|.| |++||++.   .+.|+ ++|          ++  .++.++|.|.|++||++.
T Consensus        23 g~y~C~C~~Gy~~~~~~g~~C~-dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~   79 (86)
T 1lmj_A           23 GDFECKCDEGYESGFMMMKNCM-DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLS   79 (86)
T ss_dssp             TEEEECCCSSEEECTTTSSSEE-ECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCC
T ss_pred             CCEEeeCCCCcCccCCCCCccC-CcccccCCCCcCCCCEeEcCCCCEEEECcCCcccC
Confidence            46889 99999832   22375 555          23  788899999999999874

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.59  E-value=2.2e-05  Score=65.93  Aligned_cols=74  Identities=16%  Similarity=0.215  Sum_probs=21.7

Q ss_pred             Ccee-cCCCCccCCCCcceeecCCc------------cCCCCceee-CCCCCCCCcccccCCCCCCCCCCCCCcEEeeCC
Q psy2060          24 PYLS-GLPDNEGLEKRVQTFVDGGH------------RTLDLLHDM-GARYHWGDTCETDITKSDCKGVCSPGATCSLNP   89 (193)
Q Consensus        24 ~~~c-C~~g~~g~~~~c~~~~~gg~------------~~~~~~~C~-C~~g~~G~~C~~~~~~~~C~~pC~~gg~C~~~~   89 (193)
                      .+.| |+++++|..  ||.+..|=.            .......|. |+-.+.|..|+...      .||.|||+|.+..
T Consensus       312 ~~~C~C~~~ttG~~--CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g~~CD~~t------~~C~ngg~C~~~~  383 (426)
T 3zyj_B          312 KLTCECEHNTTGPD--CGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNEL------LHCQNGGTCHNNV  383 (426)
T ss_dssp             EEEECCCTTEESSS--SCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC------------------------------
T ss_pred             CceeeCCCCCcCCC--ccccccccccCcccCCcccccCCCCCCcccCCCCCCCcCccccCc------ccCCCCCCcCCCC
Confidence            4678 999999998  998876320            112345564 55556666665332      6899999998542


Q ss_pred             CCceecccCCCCCCcccccccccee
Q psy2060          90 SGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        90 ~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                          +|. |++||.    |..|+..
T Consensus       384 ----~C~-C~~G~~----G~~Ce~c  399 (426)
T 3zyj_B          384 ----RCL-CPAAYT----GILCEKL  399 (426)
T ss_dssp             -------------------------
T ss_pred             ----CCc-CCCCCc----CCCCcCC
Confidence                898 999999    8889874

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=97.58  E-value=3.5e-05  Score=55.60  Aligned_cols=36  Identities=25%  Similarity=0.656  Sum_probs=32.6

Q ss_pred             CCCC-CCCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          73 SDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        73 ~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      ++|. +||.++|+|++.. ++|.|. |++||.    |..|+..
T Consensus        49 deC~~~pC~n~g~C~~~~-~~y~C~-C~~G~~----G~~C~~~   85 (146)
T 1x7a_L           49 DQCEPNPCLNGGLCKDDI-NSYECW-CQVGFE----GKNCELD   85 (146)
T ss_dssp             -CCSSCSSCTTCEEEECS-SCEEEE-CCSSEE----STTTCEE
T ss_pred             CcCCCCCCCCCCEeECCC-CCEEEe-cCCCCc----CCcCCCC
Confidence            3999 9999999999998 999999 999998    8899875

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=97.57  E-value=1.6e-05  Score=48.26  Aligned_cols=33  Identities=21%  Similarity=0.513  Sum_probs=27.5

Q ss_pred             CCCCCcEEeeC---CCCceecccCCCCCCccccccccceec
Q psy2060          78 VCSPGATCSLN---PSGGYICDDCSLAGSYEHYDRLCRLRA  115 (193)
Q Consensus        78 pC~~gg~C~~~---~~~~~~C~~C~~g~~~~~~g~~C~~~~  115 (193)
                      ||.|||+|+..   ..+.|.|. |++||.    |.+||...
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~-C~~Gf~----G~~Ce~~~   50 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCE-CAIGFM----GQRCEYKE   50 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEE-ECTTEE----SSSSCEEC
T ss_pred             cCCCCCEEeCCccCCCCCEEeE-CCCCCc----cCCCcccC
Confidence            99999999832   23789999 999998    99998753

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=97.57  E-value=2.7e-05  Score=48.01  Aligned_cols=26  Identities=8%  Similarity=-0.066  Sum_probs=22.4

Q ss_pred             CCCCceeeCCCCCCCCcccccCCCCCCC
Q psy2060          49 TLDLLHDMGARYHWGDTCETDITKSDCK   76 (193)
Q Consensus        49 ~~~~~~C~C~~g~~G~~C~~~~~~~~C~   76 (193)
                      ..++|+|.|++||+|.+|+..++  .|.
T Consensus        28 ~~~~y~C~C~~Gf~G~~Ce~~i~--~~~   53 (63)
T 1hae_A           28 NPSRYLCKCQPGFTGARCTENVP--MKV   53 (63)
T ss_dssp             SSCCEEEECCTTEESTTSCEECC--SSC
T ss_pred             CCCCEEEECCCCCcCCccCcCcC--ccc
Confidence            56799999999999999998876  554

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=97.56  E-value=2.8e-05  Score=43.04  Aligned_cols=27  Identities=19%  Similarity=0.297  Sum_probs=21.9

Q ss_pred             eecCC--ccCCCCceeeCCCCCCCCcccc
Q psy2060          42 FVDGG--HRTLDLLHDMGARYHWGDTCET   68 (193)
Q Consensus        42 ~~~gg--~~~~~~~~C~C~~g~~G~~C~~   68 (193)
                      +.+||  .+..++|.|.|++||+|.+|+.
T Consensus        11 C~ngg~C~~~~~~~~C~C~~G~~G~~Ce~   39 (39)
T 1edm_B           11 CLNGGSCKDDINSYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             CCTTCEEEEETTEEEEECCTTCCSTTSCC
T ss_pred             CCCCCEeEcCCCceEeECCCCCcCCccCC
Confidence            34455  5678899999999999999973

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=97.46  E-value=4e-05  Score=45.60  Aligned_cols=29  Identities=17%  Similarity=0.147  Sum_probs=23.9

Q ss_pred             eecCC--c--cCCCCceeeCCCCCCCCcccccC
Q psy2060          42 FVDGG--H--RTLDLLHDMGARYHWGDTCETDI   70 (193)
Q Consensus        42 ~~~gg--~--~~~~~~~C~C~~g~~G~~C~~~~   70 (193)
                      +.|||  .  +..++|.|.|++||+|.+|+..+
T Consensus        14 C~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~~~   46 (53)
T 1nql_B           14 CLHDGVCMYIEALDKYACNCVVGYIGERCQYRD   46 (53)
T ss_dssp             ECTTCEEEEETTTTEEEEEECTTEESTTSCEEC
T ss_pred             CCCCeEEeeecCCCCEEEecCCCCcCCCCCcCC
Confidence            55677  3  66778999999999999999764

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=97.39  E-value=5.5e-05  Score=65.89  Aligned_cols=36  Identities=25%  Similarity=0.556  Sum_probs=32.6

Q ss_pred             CCCC-CCCCCCcEEee-CCCCceecccCC-CCCCcccccccccee
Q psy2060          73 SDCK-GVCSPGATCSL-NPSGGYICDDCS-LAGSYEHYDRLCRLR  114 (193)
Q Consensus        73 ~~C~-~pC~~gg~C~~-~~~~~~~C~~C~-~g~~~~~~g~~C~~~  114 (193)
                      ++|. +||.|||+|++ .. ++|+|. |+ .||.    |..||..
T Consensus         3 d~C~~~PC~ngG~C~~~~~-~~y~C~-C~~~G~~----G~~Ce~~   41 (553)
T 1q4g_A            3 NPCCYYPCQHQGICVRFGL-DRYQCD-CTRTGYS----GPNCTIP   41 (553)
T ss_dssp             CGGGGCCCCTTCEEEEETT-TEEEEE-CTTSSEE----TTTTCEE
T ss_pred             CcCCCCCCCCCCCcCCCCC-CceEee-CCCCCcC----CCCCCCC
Confidence            3899 99999999999 66 999999 99 9998    9999874

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=97.38  E-value=4.1e-05  Score=55.77  Aligned_cols=36  Identities=25%  Similarity=0.543  Sum_probs=33.0

Q ss_pred             CCC-CCCCCCcEEeeCCCCceecccCCCCCCccccccccceec
Q psy2060          74 DCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRA  115 (193)
Q Consensus        74 ~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~~  115 (193)
                      +|. .||.++++|++.. ++|+|. |++||.    |..||...
T Consensus       121 ~c~~~~C~~~g~C~~~~-~~~~c~-C~~g~~----G~~Ce~~~  157 (162)
T 1g1s_A          121 SCQDMSCSKQGECLETI-GNYTCS-CYPGFY----GPECEYVR  157 (162)
T ss_dssp             CCCTTGGGGSEEEEECS-SSEEEE-ECTTEE----STTSCEEC
T ss_pred             CCcCCCCCCCCEEecCC-CCceEe-CCCCCc----CcccccCc
Confidence            888 9999999999987 999999 999998    99998753

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=97.33  E-value=7.1e-05  Score=65.50  Aligned_cols=37  Identities=22%  Similarity=0.492  Sum_probs=32.0

Q ss_pred             CCCC-CCCCCCcEEeeCCCCceecccCC-CCCCcccccccccee
Q psy2060          73 SDCK-GVCSPGATCSLNPSGGYICDDCS-LAGSYEHYDRLCRLR  114 (193)
Q Consensus        73 ~~C~-~pC~~gg~C~~~~~~~~~C~~C~-~g~~~~~~g~~C~~~  114 (193)
                      ++|. +||.|||+|++...++|.|. |+ +||.    |..|+..
T Consensus         2 d~C~s~PC~ngG~C~~~~~~~y~C~-C~~~G~~----G~~Ce~~   40 (587)
T 3nt1_A            2 NPCCSNPCQNRGECMSTGFDQYKCD-CTRTGFY----GENCTTP   40 (587)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEE-CTTSSEE----TTTTCEE
T ss_pred             CCCCCCCCCCCCEeeCCCCCCeEEe-cCCCCcc----CCCCCCc
Confidence            3899 99999999996433899999 99 9998    9999973

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=97.23  E-value=0.00017  Score=50.42  Aligned_cols=57  Identities=21%  Similarity=0.266  Sum_probs=40.4

Q ss_pred             eecCC--ccCC--CCc-eeeCCCCCCCCcccccCCCCCCCCCCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          42 FVDGG--HRTL--DLL-HDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        42 ~~~gg--~~~~--~~~-~C~C~~g~~G~~C~~~~~~~~C~~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      +.|||  .+..  .+| +|.|++||+|.+|++.++     .+|..+      ....|++. +..++.    |..|+.-
T Consensus         3 C~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~~-----~~C~~g------~G~~YrG~-~~~t~s----G~~Cq~W   64 (122)
T 2fd6_A            3 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS-----KTCYEG------NGHFYRGK-ASTDTM----GRPCLPW   64 (122)
T ss_dssp             CCSSCEEEECTTTTTCEEEECCTTEESTTSCEESS-----CCSBCS------SCTTCCSC-CCBBTT----SCBBCCT
T ss_pred             CCCcCCcCCCcccCCCCCccCCCCCCCccccccCc-----CCCccc------ccccceee-cccccc----CCcccCc
Confidence            45566  3432  456 999999999999998754     334432      23678999 988777    8899874

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=96.97  E-value=0.00016  Score=44.25  Aligned_cols=23  Identities=4%  Similarity=-0.340  Sum_probs=20.4

Q ss_pred             ccCCCCceeeCCCCCC-CCccccc
Q psy2060          47 HRTLDLLHDMGARYHW-GDTCETD   69 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~-G~~C~~~   69 (193)
                      .+..++|+|.|++||+ |.+|+..
T Consensus        28 ~~~~g~y~C~C~~Gy~~G~~C~~~   51 (61)
T 2k2s_B           28 KETNSGYICRCNQGYRISLDGTGN   51 (61)
T ss_dssp             EECSSEEEEECCTTEEEEECSSSC
T ss_pred             ccCCCceEeECCCCCccCCCCCCC
Confidence            6778899999999999 9999854

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=96.96  E-value=0.00046  Score=51.45  Aligned_cols=39  Identities=28%  Similarity=0.663  Sum_probs=31.4

Q ss_pred             CCcccccCCCCCCCCCCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          63 GDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        63 G~~C~~~~~~~~C~~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      ...|...    .|..+|.|||.|+    +.-+|. ||.||.    |..|+..
T Consensus       143 ~K~C~~~----~C~~~C~ngG~Cv----~P~~C~-C~~Gw~----G~~C~~~  181 (188)
T 2ygo_A          143 FKTCQQA----ECPGGCRNGGFCN----ERRICE-CPDGFH----GPHCEGT  181 (188)
T ss_dssp             EEEECCC----CCTTCCCTTCEEC----TTSCEE-CCTTCB----TTTTCBC
T ss_pred             cccccCC----ccCCCCCCCCEeC----CCCccc-CcCCCC----CCCCcCC
Confidence            4456544    7778999999998    455899 999999    9999864

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=96.96  E-value=0.00031  Score=56.62  Aligned_cols=34  Identities=29%  Similarity=0.618  Sum_probs=31.1

Q ss_pred             CCCC-CCCCCCcEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          73 SDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        73 ~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      ++|. +||.++++|++.. ++|+|. |++||.    |..|+
T Consensus         6 ~~C~~~pC~~~g~C~~~~-~~~~C~-C~~g~~----g~~C~   40 (317)
T 3h5c_B            6 SPCISQPCLHNGSCQDSI-WGYTCT-CSPGYE----GSNCE   40 (317)
T ss_dssp             CCTTSCCCTTTCCCCCCS-SSCCCC-CSSSCC----SSSSC
T ss_pred             CcCCCCCCCCCCEeECCC-CCeEEE-CCCCCc----CCccc
Confidence            4999 9999999999887 999999 999998    78887

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=96.89  E-value=0.00033  Score=40.26  Aligned_cols=20  Identities=15%  Similarity=-0.135  Sum_probs=17.6

Q ss_pred             CCCceeeCCCCCCCCccccc
Q psy2060          50 LDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        50 ~~~~~C~C~~g~~G~~C~~~   69 (193)
                      .++|.|.|++||+|.+|+..
T Consensus        25 ~~~~~C~C~~GytG~~Ce~~   44 (46)
T 1k36_A           25 MSQNYCRCEVGYTGVRCEHF   44 (46)
T ss_dssp             TTEEEEEECTTCSSTTSCCC
T ss_pred             CCCEEEECCCCCccCCCCcc
Confidence            36799999999999999864

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=96.89  E-value=0.00038  Score=49.92  Aligned_cols=40  Identities=30%  Similarity=0.878  Sum_probs=30.8

Q ss_pred             ccCCCCCCC-CCCCCCcEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          68 TDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        68 ~~~~~~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      .+++  +|. +||.+ ++|++.+ ++|+|. |++||.+...+..|.
T Consensus         2 ~did--eC~~~pC~n-g~C~n~~-g~y~C~-C~~G~~g~~~~~~C~   42 (147)
T 2w86_A            2 ADID--ECESSPCIN-GVCKNSP-GSFICE-CSSESTLDPTKTICI   42 (147)
T ss_dssp             CCCC--GGGGCCSBT-SEEEEET-TEEEEE-CCTTEEECTTSSBEE
T ss_pred             CcCc--cCcCCCCCC-CEeECCC-CCEEeE-CCCCcccCCCCCeec
Confidence            3444  999 99997 6999998 999999 999998543334443

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=96.83  E-value=0.00027  Score=50.96  Aligned_cols=35  Identities=26%  Similarity=0.542  Sum_probs=32.3

Q ss_pred             CCC-CCCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          74 DCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        74 ~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      +|. .||.+++.|.+.. ..|.|. |.++|.    |..||+.
T Consensus       121 ~~~~~pc~~~g~C~~~~-~~~~c~-C~~g~~----g~~Ce~~  156 (157)
T 1g1t_A          121 ACTNTSCSGHGECVETI-NNYTCK-CDPGFS----GLKCEQI  156 (157)
T ss_dssp             CCCTTGGGGSEEEEEET-TEEEEE-ECTTEE----STTSCEE
T ss_pred             CCCCCCCCCCCEeecCC-CCeeEE-CCCCcc----Ccccccc
Confidence            788 9999999999988 999999 999998    9999874

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.70  E-value=0.00033  Score=58.01  Aligned_cols=45  Identities=9%  Similarity=-0.062  Sum_probs=15.0

Q ss_pred             CCCCcee-cCCCCc----cCCCCcceeec-----CC-----ccCCCCceeeCCCCCC----CCcccc
Q psy2060          21 PFQPYLS-GLPDNE----GLEKRVQTFVD-----GG-----HRTLDLLHDMGARYHW----GDTCET   68 (193)
Q Consensus        21 ~~~~~~c-C~~g~~----g~~~~c~~~~~-----gg-----~~~~~~~~C~C~~g~~----G~~C~~   68 (193)
                      +.+.|.| |++||.    |..  | .++|     +.     .++.++|.|.|++||.    |..|+.
T Consensus        20 ~~g~~~C~C~~G~~l~~~~~~--C-~d~~eC~~~~~C~~~C~~~~g~~~C~C~~g~~l~~d~~~C~~   83 (386)
T 3v65_B           20 IRGAVQCTCHTGYRLTEDGRT--C-QDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKA   83 (386)
T ss_dssp             -----------------------------------CCTTEEC-----CCEECCTTEEECTTSSCEEE
T ss_pred             CCCCcEeECCCCceECCCCCc--c-CccceeCCcCcccCcCCCCCCCCeEEECCCceEcCCCCeECC
Confidence            3456889 999998    665  8 4544     11     6888999999999998    778864

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=96.69  E-value=0.0013  Score=48.16  Aligned_cols=60  Identities=20%  Similarity=0.285  Sum_probs=39.8

Q ss_pred             Cceee-CCCCCCCCcccccCC-----------CCCCC-CCCCCCc------EEeeCCCCceecccCCCCCCccccccccc
Q psy2060          52 LLHDM-GARYHWGDTCETDIT-----------KSDCK-GVCSPGA------TCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        52 ~~~C~-C~~g~~G~~C~~~~~-----------~~~C~-~pC~~gg------~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      ...|. |+++|+|.+|++-..           .+.|. -.|.+.+      +|..   ...+|. |++++.    |+.|+
T Consensus        74 tG~C~~C~~g~~G~~Ce~C~~Gy~g~~~~~~~~~~C~~C~C~~~Gs~~~~~~Cd~---~tG~C~-C~~g~~----G~~Cd  145 (162)
T 1klo_A           74 TGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNP---VTGQCQ-CLPHVS----GRDCG  145 (162)
T ss_dssp             TCCBCCBCTTEETTTTCEECTTEEECTTCSSGGGSEEECCCCTTTBGGGCCCCCT---TTCCCC-BCTTEE----STTCC
T ss_pred             CCcccCCCCCCcCCCcCcCchhhcCCccccCCCCCCeeccCCCCCccCCCCCCCC---CCCEeE-CCCCCc----CCCCC
Confidence            56794 999999999975211           12454 4566554      5642   345799 999988    99998


Q ss_pred             eecccCC
Q psy2060         113 LRARSFP  119 (193)
Q Consensus       113 ~~~~sF~  119 (193)
                      +=.+.|.
T Consensus       146 ~C~~g~~  152 (162)
T 1klo_A          146 TCDPGYY  152 (162)
T ss_dssp             EECTTCB
T ss_pred             CCCCCcc
Confidence            7544443

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=96.67  E-value=0.0014  Score=38.29  Aligned_cols=32  Identities=22%  Similarity=0.414  Sum_probs=26.8

Q ss_pred             CCCCCCcEEeeCC-CCceecccCCCCCCcccccccccee
Q psy2060          77 GVCSPGATCSLNP-SGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        77 ~pC~~gg~C~~~~-~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      ++|.|| +|.... .+.+.|. |+.||.    |.+|+..
T Consensus        14 ~yC~nG-~C~~~~~~~~~~C~-C~~gy~----G~RCe~~   46 (50)
T 3e50_C           14 QFCFHG-TCRFLVQEDKPACV-CHSGYV----GARCEHA   46 (50)
T ss_pred             CcccCC-EEeeccCCCCeEEE-CCCCCc----ccCCCce
Confidence            899997 998542 3788999 999999    9999864

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=96.62  E-value=0.0016  Score=38.11  Aligned_cols=31  Identities=26%  Similarity=0.682  Sum_probs=24.6

Q ss_pred             CCCCCcEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          78 VCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        78 pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      +|.  ..|++.. ++|+|. |++||.+...+..|.
T Consensus        21 ~C~--~~C~n~~-Gsy~C~-C~~Gy~~~~d~~~C~   51 (53)
T 1apq_A           21 QCQ--HLCHNYV-GGYFCS-CRPGYELQEDRHSCQ   51 (53)
T ss_dssp             TTS--SEEEEET-TEEEEE-CSTTCEECTTSSCEE
T ss_pred             CCC--CEeECCC-CCeEEE-CCCCCeECCCCCccC
Confidence            676  4999998 999999 999998654556663

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=96.52  E-value=0.0011  Score=46.13  Aligned_cols=32  Identities=25%  Similarity=0.570  Sum_probs=26.4

Q ss_pred             CCCCCcEEeeCC-CCce-ecccCCCCCCcccccccccee
Q psy2060          78 VCSPGATCSLNP-SGGY-ICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        78 pC~~gg~C~~~~-~~~~-~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      ||.|||+|++.. ..+| +|. ||++|.    |..|+..
T Consensus         2 pC~nggtC~~~~~~~~~~~C~-Cp~g~~----G~~Ce~~   35 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCN-CPKKFG----GQHCEID   35 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEE-CCTTEE----STTSCEE
T ss_pred             CCCCcCCcCCCcccCCCCCcc-CCCCCC----Ccccccc
Confidence            899999998762 1455 999 999998    9999875

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=96.52  E-value=0.00044  Score=53.09  Aligned_cols=52  Identities=21%  Similarity=0.379  Sum_probs=39.9

Q ss_pred             ceeeCCCCCCCCcccccCCC-------CCCC-----CCCCCCcEEeeCCCCceecccCCCC------CCcccccccccee
Q psy2060          53 LHDMGARYHWGDTCETDITK-------SDCK-----GVCSPGATCSLNPSGGYICDDCSLA------GSYEHYDRLCRLR  114 (193)
Q Consensus        53 ~~C~C~~g~~G~~C~~~~~~-------~~C~-----~pC~~gg~C~~~~~~~~~C~~C~~g------~~~~~~g~~C~~~  114 (193)
                      ..|.|++||+|.+|+...+.       ..|.     .+|.++|+|+.   +  +|. |+++      |.    |..|+..
T Consensus       107 g~C~C~~G~~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~~---g--~C~-C~~gw~~~~~~~----G~~Ce~~  176 (217)
T 2p28_B          107 GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC---G--QCL-CHTSDVPGKLIY----GQYCECD  176 (217)
T ss_dssp             TEEEECTTEESTTSCEECCCCC-GGGGGGGBSSTTSCBGGGTEEEET---T--EEE-ECCCCSTTCCEE----STTSCEE
T ss_pred             CEEECCCCccCCcccccCcccccccCCCcCCCCCCCCCCCCCCEEeC---C--ceE-CCCCCCCcccEE----CCCcccC
Confidence            58999999999999865320       1354     58999999983   2  699 9998      45    8999853

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=96.44  E-value=0.00043  Score=41.80  Aligned_cols=37  Identities=14%  Similarity=0.109  Sum_probs=26.8

Q ss_pred             cCCCCccCCCCcceeecCC--c--c--CCCCceeeCCCCCCCCccccc
Q psy2060          28 GLPDNEGLEKRVQTFVDGG--H--R--TLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        28 C~~g~~g~~~~c~~~~~gg--~--~--~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      |++.+.+..     ++|||  .  +  ..+.|.|.|++||+|.+||..
T Consensus         7 C~~~~~~~p-----C~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~~   49 (58)
T 3ltf_D            7 CPETFDAWY-----CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK   49 (58)
T ss_dssp             CCHHHHHHT-----SCSSCEEEEEEETTEEEEEEEECTTEESSSSCEE
T ss_pred             CCccccCCc-----CCCCCEEeCCccCCCCCEEeECCCCCccCCCccc
Confidence            666665532     45677  2  2  445799999999999999865

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=96.41  E-value=0.0017  Score=56.17  Aligned_cols=39  Identities=23%  Similarity=0.356  Sum_probs=26.0

Q ss_pred             CCC-CCCCCCcEEeeCC---CCceecccCCCCCCccccccccceeccc
Q psy2060          74 DCK-GVCSPGATCSLNP---SGGYICDDCSLAGSYEHYDRLCRLRARS  117 (193)
Q Consensus        74 ~C~-~pC~~gg~C~~~~---~~~~~C~~C~~g~~~~~~g~~C~~~~~s  117 (193)
                      .|. .+|.++++|.+..   ...++|. |+++|.    |..|++-...
T Consensus       437 ~C~~C~C~~~gtc~~~~~Cd~~tg~C~-C~~g~~----G~~Ce~C~~G  479 (525)
T 4aqs_A          437 GCKSCACNPLGTIPGGNPCDSETGYCY-CKRLVT----GQRCDQCLPQ  479 (525)
T ss_dssp             SSEECCCCTTTBCCSSCCBCTTTCCBC-BCTTCC----STTTCC----
T ss_pred             CCccCCCCCCceecCCCcccCCCCEEE-CCCCCc----CCCcccCCCC
Confidence            576 7787777775431   2566899 999998    9999764333

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=96.33  E-value=0.0029  Score=36.90  Aligned_cols=31  Identities=19%  Similarity=0.443  Sum_probs=25.2

Q ss_pred             CCCCCCcEEeeCC-CCceecccCCCCCCccccccccce
Q psy2060          77 GVCSPGATCSLNP-SGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        77 ~pC~~gg~C~~~~-~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      +.|.|| +|.-.. .+.+.|. |+.+|.    |.+|+.
T Consensus        18 ~yC~nG-~C~~i~~~~~~~C~-C~~gy~----G~RCe~   49 (50)
T 2rnl_A           18 NFCIHG-ECKYIEHLEAVTCK-CQQEYF----GERCGE   49 (50)
T ss_dssp             GTCSSS-EEEEETTTTEEEEE-CCSSCC----SSSCCC
T ss_pred             CcCCCC-EEEEecCCCCeeEE-CCCCcc----cccccc
Confidence            789985 998332 3788999 999999    999974

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}

Probab=96.33  E-value=0.0019  Score=46.84  Aligned_cols=35  Identities=23%  Similarity=0.597  Sum_probs=31.8

Q ss_pred             CCC-CCCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          74 DCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        74 ~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      .|. .+|.++|+|++.. .+|.|. |++||.    |..|+..
T Consensus       121 ~~~~~~C~~~g~C~~~~-~~~~c~-C~~g~~----g~~C~~~  156 (164)
T 3cfw_A          121 SCQPWSCSGHGECVEII-NNYTCN-CDVGYY----GPQCQFV  156 (164)
T ss_dssp             CCCTTSSCSSEEEEEET-TEEEEE-ECTTCB----SSSSCBC
T ss_pred             CCCCCcCCCCCeecccC-CCceee-eCCCcc----ccccccc
Confidence            788 9999999999987 999999 999998    8899864

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=96.29  E-value=0.0018  Score=38.44  Aligned_cols=37  Identities=19%  Similarity=0.546  Sum_probs=29.3

Q ss_pred             CCC---CCCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          74 DCK---GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        74 ~C~---~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      +|.   .+|.+  .|++.+ ++|+|. |++||....++..|...
T Consensus         3 EC~~~~~~C~~--~C~nt~-Gsy~C~-C~~Gy~L~~d~~~C~di   42 (55)
T 2jkh_L            3 LCSLDNGDCDQ--FCHEEQ-NSVVCS-CARGYTLADNGKACIPT   42 (55)
T ss_dssp             CTTTGGGGCSS--EEEEET-TEEEEE-CCTTEEECTTSSCEEES
T ss_pred             cccCCCCCcCc--EeEcCC-CCeEEe-CCCCCEECCCCCeeccC
Confidence            676   56864  899998 999999 99999765567778653

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=96.26  E-value=0.0016  Score=37.99  Aligned_cols=33  Identities=15%  Similarity=0.270  Sum_probs=26.6

Q ss_pred             CCCCCCcEEeeCC-CCceecccCCCCCCccccccccceec
Q psy2060          77 GVCSPGATCSLNP-SGGYICDDCSLAGSYEHYDRLCRLRA  115 (193)
Q Consensus        77 ~pC~~gg~C~~~~-~~~~~C~~C~~g~~~~~~g~~C~~~~  115 (193)
                      +.|.| |+|.-.. .+.+.|. |+.+|+    |.+||...
T Consensus        14 ~yC~n-G~C~~~~~~~~~~C~-C~~gy~----G~RCe~~~   47 (50)
T 1iox_A           14 HYCIK-GRCRFVVAEQTPSCV-CDEGYI----GARCERVD   47 (50)
T ss_dssp             TSCTT-CCEEEETTTTEEEEC-CCTTEE----TTTTCEEC
T ss_pred             CcccC-CEEEeEcCCCCeEEE-CCCCcc----cCCCCeec
Confidence            89999 6896332 3778999 999999    99998754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.09  E-value=0.00075  Score=57.55  Aligned_cols=48  Identities=19%  Similarity=0.352  Sum_probs=38.9

Q ss_pred             ceeeCCCCCCCCcccccCCCCCCCCCCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          53 LHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        53 ~~C~C~~g~~G~~C~~~~~~~~C~~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      ..+.|+++|.|..|+..    .|..+|.| |+|++    .++|. |+++|.    |..|+..
T Consensus       377 ~p~~C~~~~~g~~c~~~----~C~~~C~n-G~C~~----~~~C~-C~~G~~----G~~C~~~  424 (463)
T 2wg3_C          377 MPEECRATVQPAQTLTS----ECSRLCRN-GYCTP----TGKCC-CSPGWE----GDFCRTA  424 (463)
T ss_dssp             SCGGGCCCCCCCCCCCC----HHHHHCCS-EEECT----TSCEE-ECTTEE----STTSCEE
T ss_pred             ccccCCCCCcCCCCccc----cccCCCCC-CccCC----CCeEC-CCCCcC----CCcCCcC
Confidence            45789999999999864    78856998 79974    34899 999998    8899753

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=96.07  E-value=0.0029  Score=42.95  Aligned_cols=48  Identities=25%  Similarity=0.408  Sum_probs=34.6

Q ss_pred             CCCCCCCCcccccCCCCCCC---CCCCCCcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          57 GARYHWGDTCETDITKSDCK---GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        57 C~~g~~G~~C~~~~~~~~C~---~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      ...+|+|..|..  +  +|.   .+|.  .+|++.. ++|.|. |++||.+. .+..|+.
T Consensus        18 ~~~~~~~~~Cd~--n--eC~~~~~~C~--~~C~n~~-g~y~C~-C~~Gy~g~-~g~~C~d   68 (107)
T 2w2n_E           18 TENLYFQGAMGT--N--ECLDNNGGCS--YVCNDLK-IGYECL-CPDGFQLV-AQRRCED   68 (107)
T ss_dssp             --CCCCSCCBSC--C--GGGTGGGGCS--SEEECCS-BSCEEE-CCTTCEEE-TTTEEEC
T ss_pred             cCCCcCCCCCcC--c--cCcCCCCCCC--CEeEeCC-CCeEEE-CCCCcccc-CCCcccc
Confidence            446788999953  3  887   3665  5999988 999999 99999831 1377864

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=96.06  E-value=0.0018  Score=41.45  Aligned_cols=32  Identities=19%  Similarity=0.349  Sum_probs=25.5

Q ss_pred             CCCCCCcEEeeCC-CCceecccCCCCCCcccccccccee
Q psy2060          77 GVCSPGATCSLNP-SGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        77 ~pC~~gg~C~~~~-~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      ++|.|| +|.... .+.+.|. |+++|.    |.+|+..
T Consensus        46 ~yClnG-~C~~i~~~~~~~C~-C~~GYt----G~RCE~l   78 (79)
T 1xdt_R           46 DFCIHG-ECKYVKELRAPSCI-CHPGYH----GERCHGL   78 (79)
T ss_dssp             TCCSSE-EECCBGGGTBCCEE-ECTTEE----STTCCEE
T ss_pred             CcCCCC-EeeeecCCCCeEEE-cCCCcc----ccccccc
Confidence            899997 995332 2678999 999999    9999863

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=96.01  E-value=0.0034  Score=36.57  Aligned_cols=21  Identities=19%  Similarity=0.064  Sum_probs=17.9

Q ss_pred             CCCCceeeCCCCCCCCccccc
Q psy2060          49 TLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        49 ~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      ..+.+.|.|++||+|..|+..
T Consensus        26 ~~~~~~C~C~~gy~G~RCe~~   46 (50)
T 3e50_C           26 QEDKPACVCHSGYVGARCEHA   46 (50)
T ss_pred             CCCCeEEECCCCCcccCCCce
Confidence            346789999999999999854

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=95.97  E-value=0.0015  Score=51.88  Aligned_cols=37  Identities=27%  Similarity=0.568  Sum_probs=31.9

Q ss_pred             CCCC---CCCCCCcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          73 SDCK---GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        73 ~~C~---~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      ++|.   ++|..++.|++.. ++|.|. |++||.++  |..|..
T Consensus         6 DEC~~~~~~C~~~a~C~Nt~-Gsy~C~-C~~Gy~Gn--G~~C~d   45 (285)
T 1gl4_A            6 QTCANNRHQCSVHAECRDYA-TGFCCR-CVANYTGN--GRQCVA   45 (285)
T ss_dssp             -CHHHHGGGSCTTEEEEECS-SCEEEE-ECTTEEEC--SSSEEE
T ss_pred             hhccCCCCCCCCCCEeEcCC-CCeEEE-cCCCCCCC--CCcCCC
Confidence            4897   7999999999998 999999 99999865  778864

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=95.85  E-value=0.0024  Score=46.77  Aligned_cols=49  Identities=22%  Similarity=0.504  Sum_probs=38.2

Q ss_pred             CCCCCCcccccCCCCCCC-CC-----CCCCcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          59 RYHWGDTCETDITKSDCK-GV-----CSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        59 ~g~~G~~C~~~~~~~~C~-~p-----C~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      +||.+..+..+++  +|. .+     |.+  .|++.. ++|.|. |++||....++..|+.
T Consensus       113 ~Gf~~~~~~~di~--eC~~~~~~~~~C~~--~C~n~~-g~~~C~-C~~Gy~l~~d~~~C~~  167 (170)
T 1szb_A          113 TGFEAFYAAEDID--ECQVAPGEAPTCDH--HCHNHL-GGFYCS-CRAGYVLHRNKRTCSE  167 (170)
T ss_dssp             CEEEEEEEEEECC--TTCCCTTSCCSSSS--EEEEET-TEEEEE-CCTTEEECTTSSCEEE
T ss_pred             cCceeeeeccccC--cccCCCCCCCccCC--ccccCC-CCEEEe-CCCCcEECCCCCcccc
Confidence            6777777776665  898 43     876  799988 999999 9999986555777754

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=95.82  E-value=0.0026  Score=37.08  Aligned_cols=22  Identities=14%  Similarity=-0.005  Sum_probs=18.7

Q ss_pred             cCCCCceeeCCCCCCCCccccc
Q psy2060          48 RTLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        48 ~~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      ...+.+.|.|++||+|..||..
T Consensus        25 ~~~~~~~C~C~~gy~G~RCe~~   46 (50)
T 1iox_A           25 VAEQTPSCVCDEGYIGARCERV   46 (50)
T ss_dssp             TTTTEEEECCCTTEETTTTCEE
T ss_pred             cCCCCeEEECCCCcccCCCCee
Confidence            4456789999999999999965

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=95.77  E-value=0.0045  Score=44.42  Aligned_cols=32  Identities=25%  Similarity=0.570  Sum_probs=26.4

Q ss_pred             CCCCCcEEeeCC-CCce-ecccCCCCCCcccccccccee
Q psy2060          78 VCSPGATCSLNP-SGGY-ICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        78 pC~~gg~C~~~~-~~~~-~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      ||.|||+|+... ...+ +|. ||.+|.    |+.|+..
T Consensus        14 pC~NGGtC~~~~~~s~~~~C~-Cp~g~~----G~~Cei~   47 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSNIHWCN-CPKKFG----GQHCEID   47 (145)
T ss_dssp             CCCTTCEEEECSSSTTCEEEE-CCTTEE----STTSCEE
T ss_pred             CCCCCCCcCCCccccCCcccc-CCCCCC----CCceecc
Confidence            999999998651 2556 899 999998    9999875

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=95.75  E-value=0.0083  Score=43.02  Aligned_cols=58  Identities=19%  Similarity=0.236  Sum_probs=38.4

Q ss_pred             eeecCC--ccC--CCCc-eeeCCCCCCCCcccccCCCCCCCCCCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          41 TFVDGG--HRT--LDLL-HDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        41 ~~~~gg--~~~--~~~~-~C~C~~g~~G~~C~~~~~~~~C~~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      .++|||  ...  ...+ +|.|++||+|.+|++..+     ..      |.......|+.. ......    |..|+.-
T Consensus        14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~~~-----~~------C~~g~G~~YrG~-~s~T~s----G~~Cq~W   76 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS-----KT------CYEGNGHFYRGK-ASTDTM----GRPCLPW   76 (145)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEESS-----CC------EECTTCTTCCSC-CCBBTT----SCBCCCT
T ss_pred             CCCCCCCcCCCccccCCccccCCCCCCCCceecccc-----cc------CCCCCccccccc-eecCCc----CCcccCC
Confidence            466777  232  3456 899999999999998754     22      333223667777 665555    8888763

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=95.71  E-value=0.0026  Score=46.01  Aligned_cols=23  Identities=17%  Similarity=0.104  Sum_probs=21.0

Q ss_pred             ccCCCCceeeCCCCCCCCccccc
Q psy2060          47 HRTLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      .+..++|.|.|++||+|.+||..
T Consensus       134 ~~~~~~~~c~C~~g~~G~~Ce~~  156 (162)
T 1g1s_A          134 LETIGNYTCSCYPGFYGPECEYV  156 (162)
T ss_dssp             EECSSSEEEEECTTEESTTSCEE
T ss_pred             ecCCCCceEeCCCCCcCcccccC
Confidence            67788999999999999999976

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=95.20  E-value=0.011  Score=36.84  Aligned_cols=37  Identities=27%  Similarity=0.439  Sum_probs=29.6

Q ss_pred             CCC---CCCCCCcEEeeCCCC-ceecccCCCCCCcccccccccee
Q psy2060          74 DCK---GVCSPGATCSLNPSG-GYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        74 ~C~---~pC~~gg~C~~~~~~-~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      +|.   ..|.+  .|++.+ + +|.|. |+.||....++..|...
T Consensus         7 eC~~~nggC~h--~C~n~~-g~s~~C~-C~~Gy~L~~D~~tC~d~   47 (69)
T 1kli_L            7 ICVNENGGCEQ--YCSDHT-GTKRSCR-CHEGYSLLADGVSCTPT   47 (69)
T ss_dssp             CTTSGGGGCSS--EEEEET-TTEEEEE-CCTTEEECTTSSCEEEC
T ss_pred             cccCCCCCcCC--EeEcCC-CCCEEEe-CCCCCeECCCCCcccCc
Confidence            786   46765  799987 7 89999 99999876678888654

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=95.15  E-value=0.022  Score=33.07  Aligned_cols=21  Identities=14%  Similarity=0.322  Sum_probs=17.8

Q ss_pred             cCCCCceeeCCCCCCCCcccc
Q psy2060          48 RTLDLLHDMGARYHWGDTCET   68 (193)
Q Consensus        48 ~~~~~~~C~C~~g~~G~~C~~   68 (193)
                      ...+.+.|.|++||+|..|+.
T Consensus        29 ~~~~~~~C~C~~gy~G~RCe~   49 (50)
T 2rnl_A           29 EHLEAVTCKCQQEYFGERCGE   49 (50)
T ss_dssp             TTTTEEEEECCSSCCSSSCCC
T ss_pred             cCCCCeeEECCCCcccccccc
Confidence            445678999999999999984

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=94.56  E-value=0.011  Score=34.43  Aligned_cols=34  Identities=18%  Similarity=0.401  Sum_probs=26.0

Q ss_pred             CCCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          77 GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        77 ~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      .+|.+  .|++.+ ++|+|. |++||....++..|+..
T Consensus         6 g~C~~--~C~n~~-gs~~C~-C~~Gy~L~~d~~tC~di   39 (51)
T 1kig_L            6 GGCDQ--FCREER-SEVRCS-CAHGYVLGDDSKSCVST   39 (51)
T ss_dssp             TSSSS--CCCEET-TEECCC-CCTTEEECTTSSCEEEC
T ss_pred             CCcCC--EeEcCC-CCeEEe-CCCCcEECCCCCccccC
Confidence            34544  588887 999999 99999866667888653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=94.50  E-value=0.015  Score=48.27  Aligned_cols=37  Identities=22%  Similarity=0.318  Sum_probs=29.4

Q ss_pred             CCC-CCCCCCcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          74 DCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        74 ~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      +|. .+|..++.|++.+ ++|.|. |++||.+ ..|..|+.
T Consensus         2 eC~~~~~~c~~~C~~~~-~~y~C~-C~~G~~~-~~~~~C~d   39 (400)
T 3p5b_L            2 ECLDNNGGCSHVCNDLK-IGYECL-CPDGFQL-VAQRRCED   39 (400)
T ss_dssp             CTTTTGGGCSSEEEECS-SSEEEE-CCTTEEE-CSSSCEEE
T ss_pred             cccCCCCCCCCEeECCC-CCeEEE-CCCCCCc-CCCCcccC
Confidence            788 7888888999998 999999 9999974 23555643

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=94.36  E-value=0.044  Score=34.17  Aligned_cols=30  Identities=30%  Similarity=0.557  Sum_probs=23.9

Q ss_pred             CCC---CCCCCCcEEeeCCCCceecccCCCCCCc
Q psy2060          74 DCK---GVCSPGATCSLNPSGGYICDDCSLAGSY  104 (193)
Q Consensus        74 ~C~---~pC~~gg~C~~~~~~~~~C~~C~~g~~~  104 (193)
                      +|.   ++|.++++|++.. ++|+|..|+.+|..
T Consensus         5 EC~~~~~~C~~~~~C~Nt~-Gsy~C~~~~~g~~~   37 (71)
T 2kl7_A            5 ECLTIPEACKGEMKCINHY-GGYLCLPRSAAVIN   37 (71)
T ss_dssp             CTTCCCCSCTTEEEEEETT-CCEEEEETTSCCCS
T ss_pred             cccCCCCCCCCCCEeECCC-CCeEecccCCcccc
Confidence            887   6899999999998 99999834445553

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=93.57  E-value=0.02  Score=33.79  Aligned_cols=21  Identities=24%  Similarity=0.191  Sum_probs=17.6

Q ss_pred             ccCCCCceeeCCCCCC----CCccc
Q psy2060          47 HRTLDLLHDMGARYHW----GDTCE   67 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~----G~~C~   67 (193)
                      .|++++|.|.|++||.    |..|.
T Consensus        16 ~nt~Gsy~C~C~~Gy~L~~d~~~C~   40 (55)
T 2jkh_L           16 HEEQNSVVCSCARGYTLADNGKACI   40 (55)
T ss_dssp             EEETTEEEEECCTTEEECTTSSCEE
T ss_pred             EcCCCCeEEeCCCCCEECCCCCeec
Confidence            5888999999999996    55665

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=93.46  E-value=0.021  Score=49.66  Aligned_cols=30  Identities=20%  Similarity=0.109  Sum_probs=24.7

Q ss_pred             eeecCC--cc-CCCCceeeCC-CCCCCCcccccC
Q psy2060          41 TFVDGG--HR-TLDLLHDMGA-RYHWGDTCETDI   70 (193)
Q Consensus        41 ~~~~gg--~~-~~~~~~C~C~-~g~~G~~C~~~~   70 (193)
                      .|.|||  .+ ..++|.|.|+ +||+|.+||...
T Consensus         9 PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~~   42 (553)
T 1q4g_A            9 PCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE   42 (553)
T ss_dssp             CCCTTCEEEEETTTEEEEECTTSSEETTTTCEEC
T ss_pred             CCCCCCCcCCCCCCceEeeCCCCCcCCCCCCCCc
Confidence            355677  56 7789999999 999999999864

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=92.89  E-value=0.046  Score=31.96  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=25.9

Q ss_pred             CCCCCcEEeeCCCC-ceecccCCCCCCcccccccccee
Q psy2060          78 VCSPGATCSLNPSG-GYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        78 pC~~gg~C~~~~~~-~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      .|.+  .|++.. + +|+|. |++||....++..|...
T Consensus         8 gC~~--~C~n~~-ggs~~C~-C~~Gy~L~~Dg~tC~d~   41 (53)
T 2bz6_L            8 GCEQ--YCSDHT-GTKRSCR-CHEGYSLLADGVSCTPT   41 (53)
T ss_dssp             GCSS--EEEEET-TTEEEEE-CCTTEEECTTSSCEEEC
T ss_pred             CcCC--EeEcCC-CCCEEee-CCCCCEECCCCCcccCC
Confidence            4544  699887 7 79999 99999876678888653

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=92.88  E-value=0.079  Score=31.72  Aligned_cols=22  Identities=9%  Similarity=0.062  Sum_probs=17.4

Q ss_pred             ccCC-CCceeeCCCCCC----CCcccc
Q psy2060          47 HRTL-DLLHDMGARYHW----GDTCET   68 (193)
Q Consensus        47 ~~~~-~~~~C~C~~g~~----G~~C~~   68 (193)
                      .+++ ++|.|.|++||.    |..|..
T Consensus        14 ~n~~~gs~~C~C~~Gy~L~~D~~tC~d   40 (59)
T 2wph_E           14 KNSADNKVVCSCTEGYRLAENQKSCEP   40 (59)
T ss_dssp             EECSTTCEEEECCTTEEECTTSSCEEE
T ss_pred             EeCCCCCEEeeCCCCcEECCCCCcccC
Confidence            4777 599999999996    567764

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=92.83  E-value=0.056  Score=40.21  Aligned_cols=27  Identities=19%  Similarity=0.137  Sum_probs=19.9

Q ss_pred             eecCCccCCCCceeeCCCCCCCCccccc
Q psy2060          42 FVDGGHRTLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        42 ~~~gg~~~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      |.|||.- .+...|.|++||+|.+|+..
T Consensus       155 C~ngG~C-v~P~~C~C~~Gw~G~~C~~~  181 (188)
T 2ygo_A          155 CRNGGFC-NERRICECPDGFHGPHCEGT  181 (188)
T ss_dssp             CCTTCEE-CTTSCEECCTTCBTTTTCBC
T ss_pred             CCCCCEe-CCCCcccCcCCCCCCCCcCC
Confidence            4456621 23569999999999999875

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=92.58  E-value=0.037  Score=32.02  Aligned_cols=17  Identities=6%  Similarity=-0.412  Sum_probs=15.1

Q ss_pred             ccCCCCceeeCCCCCCC
Q psy2060          47 HRTLDLLHDMGARYHWG   63 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~G   63 (193)
                      .|+.++|.|.|++||++
T Consensus        27 ~n~~Gsy~C~C~~Gy~~   43 (53)
T 1apq_A           27 HNYVGGYFCSCRPGYEL   43 (53)
T ss_dssp             EEETTEEEEECSTTCEE
T ss_pred             ECCCCCeEEECCCCCeE
Confidence            58889999999999984

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=92.49  E-value=0.049  Score=38.98  Aligned_cols=48  Identities=27%  Similarity=0.454  Sum_probs=33.9

Q ss_pred             CCCCCCcccccCCCCCCC----CCCCCCcEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          59 RYHWGDTCETDITKSDCK----GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        59 ~g~~G~~C~~~~~~~~C~----~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      .||.......+++  +|.    .+|.  ..|++.. ++|.|. |++||.....+..|+
T Consensus       106 ~GF~~~y~~~d~~--eC~~~~~~~C~--~~C~n~~-g~~~C~-C~~Gy~l~~~~~~C~  157 (159)
T 1nzi_A          106 TGFAAYYVATDIN--ECTDFVDVPCS--HFCNNFI-GGYFCS-CPPEYFLHDDMKNCG  157 (159)
T ss_dssp             CEEEEEEEEEECC--TTTC-CCCCSS--SEEEEET-TEEEEE-CCTTCEECTTSSCEE
T ss_pred             ccceeeeecccCc--ccCCCCCCCCC--CcccCcC-CCEEEe-cCCCcEECCCCCccc
Confidence            4555445444544  887    2564  4899987 999999 999998655577775

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=92.32  E-value=0.031  Score=35.64  Aligned_cols=20  Identities=15%  Similarity=0.077  Sum_probs=17.1

Q ss_pred             CCCceeeCCCCCCCCccccc
Q psy2060          50 LDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        50 ~~~~~C~C~~g~~G~~C~~~   69 (193)
                      .+.+.|.|++||+|..|+..
T Consensus        59 ~~~~~C~C~~GYtG~RCE~l   78 (79)
T 1xdt_R           59 LRAPSCICHPGYHGERCHGL   78 (79)
T ss_dssp             GTBCCEEECTTEESTTCCEE
T ss_pred             CCCeEEEcCCCccccccccc
Confidence            35789999999999999853

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=92.08  E-value=0.043  Score=45.41  Aligned_cols=22  Identities=23%  Similarity=0.280  Sum_probs=13.5

Q ss_pred             cCCCCceeeCCCCCCCCccccc
Q psy2060          48 RTLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        48 ~~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      +..+++.|.|+++|+|.+|+.-
T Consensus       267 ~~~~~~~C~C~~nt~G~~Ce~C  288 (375)
T 4aqt_A          267 NEFDKLMCNCKHNTYGVDCEKC  288 (375)
T ss_dssp             CTTSCEEECCCTTEESTTSCEE
T ss_pred             CCCCCeeeeCcCCCcCCCcccC
Confidence            3344566677777777766653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=91.97  E-value=1  Score=36.17  Aligned_cols=36  Identities=28%  Similarity=0.720  Sum_probs=23.8

Q ss_pred             CCC--CCCCCCcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          74 DCK--GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        74 ~C~--~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      +|.  ..|.+  .|++.+ ++|+|. |++||....++..|..
T Consensus         3 ec~~~~~C~~--~C~n~~-g~~~C~-C~~g~~l~~d~~~C~~   40 (349)
T 3v64_C            3 ECAEEGYCSQ--GCTNSE-GAFQCW-CEAGYELRPDRRSCKA   40 (349)
T ss_dssp             ------CCSS--EECCC----CCEE-CCTTEEECTTSSCEEE
T ss_pred             ccCCCCCCcC--eeecCC-CCeEEE-CCCCccCCCCCCcccc
Confidence            665  66776  899988 999999 9999986666788864

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=91.90  E-value=0.16  Score=33.75  Aligned_cols=53  Identities=23%  Similarity=0.406  Sum_probs=40.5

Q ss_pred             CCCCceeeCCCCCC--CCcccccCCCCCCC---CCCCCCcEEeeCCC----CceecccCCCCCC
Q psy2060          49 TLDLLHDMGARYHW--GDTCETDITKSDCK---GVCSPGATCSLNPS----GGYICDDCSLAGS  103 (193)
Q Consensus        49 ~~~~~~C~C~~g~~--G~~C~~~~~~~~C~---~pC~~gg~C~~~~~----~~~~C~~C~~g~~  103 (193)
                      ..+...|+|.+||.  |..|....+ .+|.   .-|...+.|.....    +...|. |.+++.
T Consensus        22 ~~g~e~C~C~~gy~gdg~~Cv~~~~-~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~-C~~g~~   83 (99)
T 1ob1_C           22 LDEREECKCLLNYKQEGDKCVENPN-PTCNENNGGCDADAKCTEEDSGSNGKKITCE-CTKPDS   83 (99)
T ss_dssp             TTSCCEEEECTTEEEETTEEEECSC-CCSTTGGGGCCTTEEEECCSCSSSSCCCEEE-ECSTTC
T ss_pred             CCCCEEEEecCCeecCCCeEeeCCC-CChhhcCCCcCCCceeEecCCcccCCceEeE-eCCCCc
Confidence            56789999999998  556776532 3887   56999999987642    568899 988865

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=91.69  E-value=0.041  Score=48.11  Aligned_cols=29  Identities=17%  Similarity=0.276  Sum_probs=22.7

Q ss_pred             eeecCC--c-cCCCCceeeCC-CCCCCCccccc
Q psy2060          41 TFVDGG--H-RTLDLLHDMGA-RYHWGDTCETD   69 (193)
Q Consensus        41 ~~~~gg--~-~~~~~~~C~C~-~g~~G~~C~~~   69 (193)
                      .|.|||  . ...++|.|.|+ +||+|.+|+..
T Consensus         8 PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~   40 (587)
T 3nt1_A            8 PCQNRGECMSTGFDQYKCDCTRTGFYGENCTTP   40 (587)
T ss_dssp             CCCTTCEEEEEETTEEEEECTTSSEETTTTCEE
T ss_pred             CCCCCCEeeCCCCCCeEEecCCCCccCCCCCCc
Confidence            355666  3 34478999999 99999999975

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=91.60  E-value=0.033  Score=39.69  Aligned_cols=23  Identities=17%  Similarity=0.023  Sum_probs=20.1

Q ss_pred             ccCCCCceeeCCCCCCCCccccc
Q psy2060          47 HRTLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      .+....|.|.|.+||+|.+||..
T Consensus       134 ~~~~~~~~c~C~~g~~g~~Ce~~  156 (157)
T 1g1t_A          134 VETINNYTCKCDPGFSGLKCEQI  156 (157)
T ss_dssp             EEETTEEEEEECTTEESTTSCEE
T ss_pred             ecCCCCeeEECCCCccCcccccc
Confidence            45677899999999999999875

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=91.47  E-value=0.11  Score=31.12  Aligned_cols=34  Identities=15%  Similarity=0.461  Sum_probs=25.9

Q ss_pred             CCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          78 VCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        78 pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      .|.+  .|++.+.++|.|. |++||....++..|...
T Consensus         8 gC~~--~C~n~~~gs~~C~-C~~Gy~L~~D~~tC~d~   41 (59)
T 2wph_E            8 RCEQ--FCKNSADNKVVCS-CTEGYRLAENQKSCEPA   41 (59)
T ss_dssp             GCSS--EEEECSTTCEEEE-CCTTEEECTTSSCEEES
T ss_pred             CcCC--EeEeCCCCCEEee-CCCCcEECCCCCcccCC
Confidence            4544  6888762499999 99999876678888653

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=91.22  E-value=0.099  Score=43.89  Aligned_cols=58  Identities=14%  Similarity=0.138  Sum_probs=31.4

Q ss_pred             CCCceeeCCCCCCCCcccccCCCCCCC-CCCCCCcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          50 LDLLHDMGARYHWGDTCETDITKSDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        50 ~~~~~C~C~~g~~G~~C~~~~~~~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      .+.+.|.|+.+++|.+|+.-..  ... .|+.+|..|.........|..|+-++.    |..|+.
T Consensus       310 ~g~~~C~C~~~ttG~~CE~C~p--gy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~----g~~CD~  368 (426)
T 3zyj_B          310 NSKLTCECEHNTTGPDCGKCKK--NYQGRPWSPGSYLPIPKGAANACIPSISSIG----TNVCDN  368 (426)
T ss_dssp             TTEEEECCCTTEESSSSCEECT--TCCSSCCCCCBCCSSSSCBCCCCCCCCC-------------
T ss_pred             CCCceeeCCCCCcCCCcccccc--ccccCcccCCcccccCCCCCCcccCCCCCCC----cCcccc
Confidence            3568999999999999996543  444 788776543211124455654544443    566654

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}

Probab=91.04  E-value=0.065  Score=38.47  Aligned_cols=23  Identities=9%  Similarity=0.027  Sum_probs=19.9

Q ss_pred             ccCCCCceeeCCCCCCCCccccc
Q psy2060          47 HRTLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      .+..++|.|.|++||.|..|+..
T Consensus       134 ~~~~~~~~c~C~~g~~g~~C~~~  156 (164)
T 3cfw_A          134 VEIINNYTCNCDVGYYGPQCQFV  156 (164)
T ss_dssp             EEETTEEEEEECTTCBSSSSCBC
T ss_pred             cccCCCceeeeCCCccccccccc
Confidence            45577899999999999999865

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=89.99  E-value=0.087  Score=32.63  Aligned_cols=22  Identities=9%  Similarity=-0.097  Sum_probs=17.2

Q ss_pred             ccCCC-CceeeCCCCCC----CCcccc
Q psy2060          47 HRTLD-LLHDMGARYHW----GDTCET   68 (193)
Q Consensus        47 ~~~~~-~~~C~C~~g~~----G~~C~~   68 (193)
                      .++.+ +|+|.|++||.    |..|..
T Consensus        20 ~n~~g~s~~C~C~~Gy~L~~D~~tC~d   46 (69)
T 1kli_L           20 SDHTGTKRSCRCHEGYSLLADGVSCTP   46 (69)
T ss_dssp             EEETTTEEEEECCTTEEECTTSSCEEE
T ss_pred             EcCCCCCEEEeCCCCCeECCCCCcccC
Confidence            57777 79999999996    566653

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=89.66  E-value=0.16  Score=36.71  Aligned_cols=37  Identities=22%  Similarity=0.707  Sum_probs=29.0

Q ss_pred             CCCCCcEEeeCC-CCceec-ccCCCCCCccccccccceecccCC
Q psy2060          78 VCSPGATCSLNP-SGGYIC-DDCSLAGSYEHYDRLCRLRARSFP  119 (193)
Q Consensus        78 pC~~gg~C~~~~-~~~~~C-~~C~~g~~~~~~g~~C~~~~~sF~  119 (193)
                      ||.++++|.... .+.++| . |+++++    |.+|+.=...|.
T Consensus         2 ~C~~~g~C~~~~~~g~~~C~~-C~~g~~----G~~Ce~C~~g~~   40 (162)
T 1klo_A            2 PCPGGSSCAIVPKTKEVVCTH-CPTGTA----GKRCELCDDGYF   40 (162)
T ss_dssp             CSCTTCCEEECSSSCCEEECS-CCTTEE----STTSCEECTTEE
T ss_pred             cCcCcCcccccCCCCCEEeCC-CCCCCc----CCCCcCCCCCCc
Confidence            789999998765 267899 7 999998    999987444443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=89.34  E-value=0.27  Score=43.76  Aligned_cols=27  Identities=26%  Similarity=0.411  Sum_probs=20.6

Q ss_pred             cEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          83 ATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        83 g~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      ..|++.. ++|.|. |++||.+ ..|..|+
T Consensus       306 ~~C~~~~-~~~~C~-C~~G~~~-~~~~~C~  332 (699)
T 1n7d_A          306 HVCNDLK-IGYECL-CPDGFQL-VAQRRCE  332 (699)
T ss_dssp             TTCCCCT-TCCCCC-CCSSSCC-CSSSCCC
T ss_pred             CCcccCC-CCcEEe-CCCCeEc-CCCCccc
Confidence            4788887 999999 9999974 2345554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=88.96  E-value=0.27  Score=44.54  Aligned_cols=36  Identities=25%  Similarity=0.504  Sum_probs=25.6

Q ss_pred             CCC-CCCCCCc-----EEeeCCCCceecccCCCCCCccccccccc
Q psy2060          74 DCK-GVCSPGA-----TCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        74 ~C~-~pC~~gg-----~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      .|. ++|.++.     .|++.+ ++|.|. |++||.. ..|..|+
T Consensus       309 ~C~~~~C~~~~~~C~~~C~~~~-~~y~C~-C~~Gy~l-~~g~~C~  350 (791)
T 3m0c_C          309 ECGTNECLDNNGGCSHVCNDLK-IGYECL-CPDGFQL-VAQRRCE  350 (791)
T ss_dssp             TBSCCSTTTGGGGCSSEEEECS-BSEEEE-CCTTCEE-ETTTEEE
T ss_pred             ccccccccccccCccccccCCC-CCcccC-CCCCCcc-CCCCccc
Confidence            355 5665443     899998 999999 9999953 2255665

>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*

Probab=87.67  E-value=0.077  Score=47.28  Aligned_cols=46  Identities=17%  Similarity=0.220  Sum_probs=33.1

Q ss_pred             eeCCCCCCCCcccccCCCCCCCCCCCCCcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          55 DMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        55 C~C~~g~~G~~C~~~~~~~~C~~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      ..|.++|+|.+|....   .|...|.+.|.|+..     +|. |.+||.    |..|+.
T Consensus       520 ~~C~~gw~g~dc~i~~---~Cp~~C~ghG~C~~G-----~C~-Cd~G~~----G~~C~~  565 (725)
T 2e26_A          520 FDKQQTWAIDNVYIGD---GCLDMCSGHGRCVQG-----SCV-CDEQWG----GLYCDE  565 (725)
T ss_dssp             CCTTCCEEEEEEEEES---CSSGGGGGSEEEETT-----EEE-ECTTEE----STTSCE
T ss_pred             CccCCCcccccccccC---CCCcccCCCcEECCC-----CEe-eCCCcc----CCCcCc
Confidence            3678888888887431   677778888888743     577 878877    777765

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=87.34  E-value=0.37  Score=31.95  Aligned_cols=53  Identities=9%  Similarity=-0.030  Sum_probs=35.4

Q ss_pred             eccCCCCCCcee-cCCCCccCCCCcceee-------cCC--------ccCC----CCceeeCCCCCC-----CCcccc
Q psy2060          16 DLTNGPFQPYLS-GLPDNEGLEKRVQTFV-------DGG--------HRTL----DLLHDMGARYHW-----GDTCET   68 (193)
Q Consensus        16 ~~~~~~~~~~~c-C~~g~~g~~~~c~~~~-------~gg--------~~~~----~~~~C~C~~g~~-----G~~C~~   68 (193)
                      .+.+.-.+..+| |.+||.|....|..+.       |||        ...+    +...|.|.+||+     |..|.+
T Consensus        17 ~C~r~~~g~e~C~C~~gy~gdg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~~~~~~gvf~~~   94 (99)
T 1ob1_C           17 GCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLFDGIFCSH   94 (99)
T ss_dssp             EEECCTTSCCEEEECTTEEEETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTCCEEGGGTEECC
T ss_pred             CeEEcCCCCEEEEecCCeecCCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCcccceeEEEecc
Confidence            445555567778 9999988764566542       255        2222    579999999975     777754

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=87.34  E-value=0.87  Score=30.39  Aligned_cols=52  Identities=23%  Similarity=0.414  Sum_probs=39.8

Q ss_pred             cCCCCceeeCCCCCC--CCcccccCCCCC-CC---CCCCCCcEEeeCCCCceecccCCCCCC
Q psy2060          48 RTLDLLHDMGARYHW--GDTCETDITKSD-CK---GVCSPGATCSLNPSGGYICDDCSLAGS  103 (193)
Q Consensus        48 ~~~~~~~C~C~~g~~--G~~C~~~~~~~~-C~---~pC~~gg~C~~~~~~~~~C~~C~~g~~  103 (193)
                      ..++...|+|..||.  |..|-.. +  + |.   .-|...+.|.....+...|. |..+|.
T Consensus        27 ~~~G~e~CrCl~gY~~dg~~Cv~~-N--p~C~~nNGGCd~nAeC~~~~~~ki~C~-C~~~~~   84 (105)
T 1n1i_A           27 YLDGTEEWRCLLGFKEVGGKCVPA-S--ITCEENNGGCAPEAECTMDDKKEVECK-CTKEGS   84 (105)
T ss_dssp             CTTSCEEEEECTTEEECSSSEEEC-C--CCTTSGGGGSCTTSEEEECTTSCEEEE-CCSTTC
T ss_pred             CCCCCEeEEEECCeeccCCEEEEC-C--cchhhcCCCcCCCcEeEECCCCEEEeE-CCCCCC
Confidence            366788999999998  5677665 3  5 76   56888899997732678899 988754

>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*

Probab=83.98  E-value=0.42  Score=37.87  Aligned_cols=54  Identities=20%  Similarity=0.397  Sum_probs=34.8

Q ss_pred             eeeCCCCCCCCcccccCCC-------CCCC-----CCCCCCcEEeeCCCCceecccCCCCCCcc--ccccccce
Q psy2060          54 HDMGARYHWGDTCETDITK-------SDCK-----GVCSPGATCSLNPSGGYICDDCSLAGSYE--HYDRLCRL  113 (193)
Q Consensus        54 ~C~C~~g~~G~~C~~~~~~-------~~C~-----~pC~~gg~C~~~~~~~~~C~~C~~g~~~~--~~g~~C~~  113 (193)
                      .|.|.+||+|..|+-..+.       ..|.     ..|.+.|.|+-.     +|. |......+  ..|++|+.
T Consensus       208 ~C~C~~g~~G~~CeC~~~~~~~~~~~~~C~~~~~~~~CSgrG~C~CG-----~C~-C~~~~~~~~~~~G~~~~~  275 (280)
T 2p26_A          208 ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG-----QCL-CHTSDVPGKLIYGQYCEH  275 (280)
T ss_dssp             EEEECTTEESTTSCEECTTSCHHHHHHTTCSSTTSCGGGGSEEEETT-----EEE-ECCCSSTTCEEESTTSCE
T ss_pred             ceeCCCCCcCCcceecCCccccccccccCCCCCCCCccCCCceEeCC-----eeE-CcCCCCCCeeEeeEeccc
Confidence            5889999999999854321       1575     258888888732     577 85543221  23777764

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=82.13  E-value=0.38  Score=38.11  Aligned_cols=22  Identities=9%  Similarity=-0.065  Sum_probs=19.1

Q ss_pred             ccCCCCceeeCCCCCC--CCcccc
Q psy2060          47 HRTLDLLHDMGARYHW--GDTCET   68 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~--G~~C~~   68 (193)
                      .|+.++|.|.|++||.  |..|..
T Consensus        22 ~Nt~Gsy~C~C~~Gy~GnG~~C~d   45 (285)
T 1gl4_A           22 RDYATGFCCRCVANYTGNGRQCVA   45 (285)
T ss_dssp             EECSSCEEEEECTTEEECSSSEEE
T ss_pred             EcCCCCeEEEcCCCCCCCCCcCCC
Confidence            6899999999999998  677863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	193
d1pz7a_	195	b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxI	3e-11
d1h30a1	191	b.29.1.4 (A:261-451) Growth-arrest-specific protei	2e-10
d1dyka1	189	b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse	8e-09
d1d2sa_	170	b.29.1.4 (A:) Sex hormone-binding globulin {Human	4e-08
d1dyka2	185	b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse	4e-07
d2r1da1	177	b.29.1.4 (A:36-212) Ligand-binding domain of neure	9e-05
d1h30a2	218	b.29.1.4 (A:461-678) Growth-arrest-specific protei	0.002

>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 195

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Agrin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.6 bits (138), Expect = 3e-11
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 95  CDDCSLAG-SYEHYDRLCRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYN 153
            +  +  G +Y  Y        +S     +   P+ K     H +L   T    GL+L++
Sbjct: 6   AEAIAFDGRTYMEYHNA---VTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWS 62

Query: 154 GRYNERHDFIALELTDSGRSVQFSWSLGSEVARLN 188
           G+  ER D+IAL + D    VQ  + LGS+   L 
Sbjct: 63  GKGLERSDYIALAIVDGF--VQMMYDLGSKPVVLR 95

>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 2e-10
 Identities = 24/114 (21%), Positives = 36/114 (31%), Gaps = 8/114 (7%)

Query: 79  CSPGATCSLNPSGGYICDD---CSLAGSYEHYDRLCRLRARSFPKNSFLTFPALKQRNRL 135
              G   S +      C+D   C      +    L   R  S      L F    Q  RL
Sbjct: 4   GRGGLKLSQD---MDTCEDILPCVPFSVAKSVKSLYLGRMFSGTPVIRLRFK-RLQPTRL 59

Query: 136 HIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNR 189
             +  F T    G+LL+ G  ++   +I L L      +Q  ++    V     
Sbjct: 60  VAEFDFRTFDPEGILLFAGG-HQDSTWIVLALRAGRLELQLRYNGVGRVTSSGP 112

>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 189

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (121), Expect = 8e-09
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 117 SFPKNSF--LTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSV 174
              +NS   + F   K +NRL I+L+  T  +SGLL Y  R N   DF  ++L +     
Sbjct: 20  GLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARINHA-DFATVQLRNG--FP 76

Query: 175 QFSWSLGS 182
            FS+ LGS
Sbjct: 77  YFSYDLGS 84

>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Sex hormone-binding globulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 4e-08
 Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 4/67 (5%)

Query: 122 SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
           + +TF  L +  +     +  T    G++ Y    N + D+  L L D     +      
Sbjct: 16  AVMTFD-LTKITKTSSSFEVRTWDPEGVIFYGDT-NPKDDWFMLGLRDG--RPEIQLHNH 71

Query: 182 SEVARLN 188
                + 
Sbjct: 72  WAQLTVG 78

>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 185

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.0 bits (108), Expect = 4e-07
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 118 FPKNSFLTFPA-LKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQF 176
           F    F       K    L ++ +F T   +G+LL     +++ D + +E+ D    + F
Sbjct: 8   FDGTGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVS--SQKMDGMGIEMIDE--KLMF 63

Query: 177 SWSLGSEVARL 187
               G+     
Sbjct: 64  HVDNGAGRFTA 74

>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Ligand-binding domain of neurexin 1beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.0 bits (90), Expect = 9e-05
 Identities = 9/83 (10%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 115 ARSFPKNSFL--TFPALKQRN--RLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDS 170
                    +   +P   + +     + + FST+    +L+     +   D++ L +   
Sbjct: 6   YIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQG 65

Query: 171 GRSVQFSWSLGSEVARLNRADSI 193
              +   +++G++   +  +++I
Sbjct: 66  --KIGVKFNVGTDDIAIEESNAI 86

>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 10/62 (16%)

Query: 118 FPKNSFLTFP----------ALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALEL 167
           +P + F  +             +    + +        D+G+L      + R   +++ L
Sbjct: 20  YPGSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWAPDLRAVPLSVAL 79

Query: 168 TD 169
            D
Sbjct: 80  VD 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d1h30a1	191	Growth-arrest-specific protein Gas6 {Human (Homo s	99.29
d1pz7a_	195	Agrin {Chicken (Gallus gallus) [TaxId: 9031]}	99.15
d1dyka1	189	Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:	99.15
d1d2sa_	170	Sex hormone-binding globulin {Human (Homo sapiens)	98.98
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.96
d1dyka2	185	Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:	98.96
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.96
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.89
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.86
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.82
d2r1da1	177	Ligand-binding domain of neurexin 1beta {Rat (Ratt	98.79
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.76
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.74
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.68
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.67
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.62
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.59
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.56
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	98.26
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	98.16
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	98.15
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	97.99
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	97.98
d1h30a2	218	Growth-arrest-specific protein Gas6 {Human (Homo s	97.98
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	97.98
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	97.95
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	97.91
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.86
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	97.84
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	97.84
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.82
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	97.74
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.74
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.71
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	97.7
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.67
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	97.65
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.64
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.64
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.63
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	97.52
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.49
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	97.42
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	97.39
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	97.35
d1nt0a3	45	Mannose-binding protein associated serine protease	97.33
d1szba2	45	Mannose-binding protein associated serine protease	97.29
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	97.23
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	97.21
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.19
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	97.17
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	97.08
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	97.03
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	97.03
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	96.97
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	96.97
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	96.94
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.88
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	96.65
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.28
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	95.81
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	95.77
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	95.7
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	95.68
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	95.64
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	95.49
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	95.44
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	95.11
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	95.02
d1nt0a3	45	Mannose-binding protein associated serine protease	95.01
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	94.93
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	94.9
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	94.83
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	94.77
d1szba2	45	Mannose-binding protein associated serine protease	94.77
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	94.35
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	94.34
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	93.91
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	93.11
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	92.66
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	91.61
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	91.27
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	91.13
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	90.24
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	89.51
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	88.84
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	86.17
d1jv2b4	31	Integrin beta EGF-like domains {Human (Homo sapien	81.02

>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.6e-12  Score=93.69  Aligned_cols=73  Identities=22%  Similarity=0.375  Sum_probs=53.9

Q ss_pred             ccCCCc--ceEEecCCCCCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEcCCC
Q psy2060         116 RSFPKN--SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRADS  192 (193)
Q Consensus       116 ~sF~g~--syl~~~~~~~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s~~~  192 (193)
                      .+|.+.  +|+.++... ...++|+|.|||..++|+|||.+. ....||++|+|.+|+  |++++++|++..++++...
T Consensus        39 ~~f~g~~~~~~~~~~~~-~~~~~i~~~FrT~~~~GlL~~~~~-~~~~~fi~l~l~~G~--l~~~~~~g~~~~~~~~~~~  113 (191)
T d1h30a1          39 RMFSGTPVIRLRFKRLQ-PTRLVAEFDFRTFDPEGILLFAGG-HQDSTWIVLALRAGR--LELQLRYNGVGRVTSSGPV  113 (191)
T ss_dssp             C-----CCEEEECCBSS-CCCCEEEEEEEECCSSEEEEEEES-CTTSEEEEEEEETTE--EEEEEEETTEEEEEEEEEE
T ss_pred             cccCCCceEEEEeccCC-CCceEEEEEEEeCCCCeEEEEEcC-CCCCcEEEEEEECCE--EEEEEEcCCCcEEecCCcc
Confidence            356654  444454333 344689999999999999999864 446799999999999  9999999999888877543

>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Agrin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.15  E-value=5.9e-11  Score=88.41  Aligned_cols=77  Identities=29%  Similarity=0.452  Sum_probs=62.1

Q ss_pred             ecccCCCcceEEecCCCC----------------CceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEE
Q psy2060         114 RARSFPKNSFLTFPALKQ----------------RNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFS  177 (193)
Q Consensus       114 ~~~sF~g~syl~~~~~~~----------------~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~  177 (193)
                      ...+|.|.+|+.|.....                ....+|+|+|+|..++|+|||.+......||++|+|.+|+  |+++
T Consensus         7 ~~~~F~G~sy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~frT~~~~GlLly~~~~~~~~df~~l~L~~G~--l~~~   84 (195)
T d1pz7a_           7 EAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGLERSDYIALAIVDGF--VQMM   84 (195)
T ss_dssp             CCEEEESSCCEEEECCSCCC-------CCSSCEEESEEEEEEEEEECCSSEEEEEESCCSTTCCEEEEEEETTE--EEEE
T ss_pred             cCEEECCceEEEEecccccccccccccccccccccceeEEEEEEEeCCCCEEEEEEcCCCCCCCEEEEEEECCE--EEEE
Confidence            456788999998742211                2235799999999999999998654567789999999999  9999


Q ss_pred             EeCCCceEEEEcCCC
Q psy2060         178 WSLGSEVARLNRADS  192 (193)
Q Consensus       178 ~~~g~g~~~l~s~~~  192 (193)
                      |++|++..++++..+
T Consensus        85 ~~~g~~~~~~~~~~~   99 (195)
T d1pz7a_          85 YDLGSKPVVLRSTVP   99 (195)
T ss_dssp             EESSSCCEEEEEEEE
T ss_pred             EEcCCCCEEEeCCce
Confidence            999999888877644

>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=3.6e-10  Score=83.65  Aligned_cols=73  Identities=32%  Similarity=0.454  Sum_probs=61.2

Q ss_pred             CCCcceEEecCCCC--CceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEcCCCC
Q psy2060         118 FPKNSFLTFPALKQ--RNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRADSI  193 (193)
Q Consensus       118 F~g~syl~~~~~~~--~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s~~~i  193 (193)
                      +.+.+|+.++....  ..+.+|+|+|||..++|+|||.+. ....||++|+|.+|+  |+++|++|++..++.++..|
T Consensus        21 ~s~~s~~~~~~~~~~~~~~~~i~~~frT~~~~GlL~~~~~-~~~~dfi~l~l~~G~--l~~~~~~g~~~~~~~~~~~v   95 (189)
T d1dyka1          21 LSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMAR-INHADFATVQLRNGF--PYFSYDLGSGDTSTMIPTKI   95 (189)
T ss_dssp             SSTTCEEEEECCGGGGSSEEEEEEEEEECCSCEEEEEEEC-TTSSSEEEEEEETTE--EEEEEESSSCEEEEECCSCC
T ss_pred             CCCCceEEEecCcccccccEEEEEEEEECCCCEEEEEEcC-CCCCcEEEEEEECCE--EEEEEECCCccEEecCCcEe
Confidence            35689988864433  466789999999999999999875 456789999999999  99999999999998887654

>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Sex hormone-binding globulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.9e-09  Score=78.39  Aligned_cols=71  Identities=15%  Similarity=0.255  Sum_probs=58.6

Q ss_pred             CCcceEEecCCCCCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEcCCCC
Q psy2060         119 PKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRADSI  193 (193)
Q Consensus       119 ~g~syl~~~~~~~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s~~~i  193 (193)
                      ...+|+.|...+. ....|+|+|||..++|+|||.+. ....||++|+|.+|+  |+++|++|++..++.+...+
T Consensus        13 ~~~~~~~~~~~~~-~~~~isf~FrT~~~~GlL~~~~~-~~~~~fi~L~L~~G~--l~~~~~~g~~~~~~~s~~~~   83 (170)
T d1d2sa_          13 EPIAVMTFDLTKI-TKTSSSFEVRTWDPEGVIFYGDT-NPKDDWFMLGLRDGR--PEIQLHNHWAQLTVGAGPRL   83 (170)
T ss_dssp             SCSEEEEEEGGGC-CCCEEEEEEEESCSSEEEEEEEE-ETTTEEEEEEEETTE--EEEEEESSSCEEEEECSCCC
T ss_pred             CCeEEEEEeccCC-ceeEEEEEEEECCCCEEEEEEcC-CCCCcEEEEEEECCE--EEEEEeCCCcceEEeccccc
Confidence            3457888864443 45689999999999999999864 346789999999999  99999999999999887654

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.6e-10  Score=62.60  Aligned_cols=35  Identities=26%  Similarity=0.708  Sum_probs=32.5

Q ss_pred             CCCC-CCCCCCcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          73 SDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        73 ~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      ++|. +||.|+|+|++.. ++|+|. |+++|.    |++||.
T Consensus         4 d~C~~~PC~ngg~C~~~~-~~y~C~-C~~g~~----G~~Cei   39 (39)
T d1edmb_           4 DQCESNPCLNGGSCKDDI-NSYECW-CPFGFE----GKNCEL   39 (39)
T ss_dssp             CTTTTCCCCTTCEEEEET-TEEEEE-CCTTCC----STTSCC
T ss_pred             ccCCCCCCCCCcEEEcCC-CCEEEE-CCCCCC----CCCCCC
Confidence            4999 9999999999987 999999 999999    999973

>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=2.1e-09  Score=79.05  Aligned_cols=68  Identities=21%  Similarity=0.244  Sum_probs=56.6

Q ss_pred             cCCCcceEEecCC-CCCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEE
Q psy2060         117 SFPKNSFLTFPAL-KQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLN  188 (193)
Q Consensus       117 sF~g~syl~~~~~-~~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~  188 (193)
                      .|.|.+|+.+... .....+.|+|+|||..++|+|||.+  ....||++|+|.+|+  |+++|++|++...+.
T Consensus         7 ~F~G~~y~~~~~~~~~~~~~~is~~frT~~~~GlLl~~~--~~~~d~~~l~l~~G~--l~~~~~~g~~~~~~~   75 (185)
T d1dyka2           7 YFDGTGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVS--SQKMDGMGIEMIDEK--LMFHVDNGAGRFTAI   75 (185)
T ss_dssp             EEEEEEEEECCSSBCCBSEEEEEEEEEESCSCEEEEEEE--CSSSCEEEEEEETTE--EEEEEESSSCCEEEE
T ss_pred             EECCCceEEEcCCCCCCceEEEEEEEEECCCCEEEEEeC--CCCCceEEEEEECCe--EEEEEECCCCeEEEE
Confidence            4889999998653 3345678999999999999999976  346799999999999  999999998865543

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.1e-10  Score=62.89  Aligned_cols=36  Identities=25%  Similarity=0.581  Sum_probs=33.2

Q ss_pred             CCCC-CCCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          73 SDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        73 ~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      ++|. +||.|+|+|++.. ++|+|. |++||.    |++||..
T Consensus         2 d~C~~~PC~n~g~C~~~~-~~y~C~-C~~G~~----G~~Ce~d   38 (39)
T d2vj3a2           2 NECVSNPCQNDATCLDQI-GEFQCI-CMPGYE----GVHCEVN   38 (39)
T ss_dssp             CTTTTCCCCSSCEEEECS-SCEEEE-CCTTEE----SSSSCEE
T ss_pred             cCCcCCCCCCCCEEECCC-CCEEEe-CCCCCc----cCcCeeC
Confidence            3899 9999999999987 999999 999998    9999874

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.6e-10  Score=61.93  Aligned_cols=37  Identities=24%  Similarity=0.618  Sum_probs=33.4

Q ss_pred             CCCC-CCCCCCcEEeeCCCCceecccCCCCCCccccccccceec
Q psy2060          73 SDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRA  115 (193)
Q Consensus        73 ~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~~  115 (193)
                      ++|. +||.|+|+|++.. ++|.|. |++||.    |+.||..+
T Consensus         1 D~C~~~PC~ngg~C~~~~-~~y~C~-C~~G~~----G~~Cei~~   38 (39)
T d1xkba1           1 DQCETSPCQNQGKCKDGL-GEYTCT-CLEGFE----GKNCELFT   38 (39)
T ss_dssp             CTTTTCCCCSSCEECCCS-SSCCEE-CCTTEE----TTTTCEES
T ss_pred             CcCCCCCCCCCcEEECCC-CCEEEE-CCCCCC----cCcCeEcc
Confidence            3899 9999999999987 999999 999998    99998753

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=6.4e-10  Score=59.49  Aligned_cols=34  Identities=21%  Similarity=0.663  Sum_probs=31.2

Q ss_pred             CCCC-CCCCCCcEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          73 SDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        73 ~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      ++|. +||.|+|+|++.. ++|+|. |+++|.    |.+||
T Consensus         1 d~C~~~PC~ngg~C~~~~-~~y~C~-C~~g~~----G~~CE   35 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKI-NEFQCE-CPTGFT----GHLCQ   35 (35)
T ss_dssp             CTTTTCCSTTTCEEEECS-SCEEEE-CCTTEE----SSSSC
T ss_pred             CCCCCCCCCCCcEEECCC-CCeEEE-CCCCCC----CCCcC
Confidence            3899 9999999999987 999999 999998    99986

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.82  E-value=6.1e-10  Score=60.30  Aligned_cols=34  Identities=32%  Similarity=0.715  Sum_probs=31.6

Q ss_pred             CCCC-CCCCCCcEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          73 SDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        73 ~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      ++|. +||.|+|+|++.. ++|.|. |+++|.    |++||
T Consensus         3 d~C~~~PC~ngg~C~~~~-~~y~C~-C~~g~~----G~~Ce   37 (37)
T d2c4fl1           3 DQCASSPCQNGGSCKDQL-QSYICF-CLPAFE----GRNCE   37 (37)
T ss_dssp             CGGGGCCCCTTCEEEEET-TEEEEE-CCTTEE----STTSC
T ss_pred             ccCCCCCCCCCCEEECCC-CCeEEE-CCCCCc----CCCCC
Confidence            4899 9999999999987 999999 999998    99986

>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Ligand-binding domain of neurexin 1beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.79  E-value=1.8e-08  Score=73.27  Aligned_cols=72  Identities=13%  Similarity=0.268  Sum_probs=56.2

Q ss_pred             ccCC-CcceEEecCCC----CCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEEEecCCeeEEEEEEeCCCceEEEEc
Q psy2060         116 RSFP-KNSFLTFPALK----QRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNR  189 (193)
Q Consensus       116 ~sF~-g~syl~~~~~~----~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l~l~~G~~~l~~~~~~g~g~~~l~s  189 (193)
                      ..|. +.+|+.|...+    .....+|+|.|||..++|+|||........||++|+|.+|+  |++.|++|++...+.+
T Consensus         6 ~~F~~g~~~i~y~~~~~~~~~~~~~~is~~FrT~~~~G~Ll~~~~~~~~~~~l~l~l~~G~--l~~~~~~g~~~~~~~~   82 (177)
T d2r1da1           6 YIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGK--IGVKFNVGTDDIAIEE   82 (177)
T ss_dssp             EEEEEEEEEEEEECCGGGCCCBSEEEEEEEEECCCSSEEEEEEEECTTCCCEEEEEEETTE--EEEEEESSSCEEEEEC
T ss_pred             EEeCCCCeEEEEECCCccCCCccccEEEEEEEeCCCCEEEEEEcCCCCCCcEEEEEEECCE--EEEEEcCCCceEEEEe
Confidence            4564 68998885222    13346899999999999999998643556899999999999  9999999987665543

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.5e-09  Score=59.62  Aligned_cols=34  Identities=21%  Similarity=0.675  Sum_probs=31.6

Q ss_pred             CCC---CCCCCCcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          74 DCK---GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        74 ~C~---~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      +|.   +||.++|+|++.. ++|+|. |++||.    |+.|+.
T Consensus         5 eC~~~~~pC~n~g~C~n~~-g~y~C~-C~~G~~----G~~Ce~   41 (42)
T d2vj3a1           5 ECSLGANPCEHAGKCINTL-GSFECQ-CLQGYT----GPRCEI   41 (42)
T ss_dssp             TTTSSSCSSSTTCEEEECS-SSEEEE-CCTTEE----STTSCE
T ss_pred             cccCCCCCCCCCcEeECCC-CCEEeE-CCCCCc----CCCCcC
Confidence            787   8999999999998 999999 999998    999985

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=9.1e-10  Score=60.34  Aligned_cols=36  Identities=25%  Similarity=0.537  Sum_probs=33.0

Q ss_pred             CCCC-CCCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          73 SDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        73 ~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      ++|. +||.|+|+|++.. ++|+|. |+++|.    |++||..
T Consensus         2 ~~C~~~pC~ngg~C~~~~-~~~~C~-C~~g~~----G~~Ce~~   38 (39)
T d1g1ta2           2 AACTNTSCSGHGECVETI-NNYTCK-CDPGFS----GLKCEQI   38 (39)
T ss_dssp             CCCCTTGGGGSEEEEEET-TEEEEE-ECTTEE----STTSCEE
T ss_pred             CcccCCcCCCCcEEECCC-CCEEEe-CCCCCc----CcCcCcc
Confidence            3899 9999999999987 999999 999998    9999874

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=6.9e-09  Score=57.36  Aligned_cols=36  Identities=22%  Similarity=0.671  Sum_probs=31.2

Q ss_pred             CC-CCCCCCcEEeeCC-CCceecccCCCCCCccccccccceec
Q psy2060          75 CK-GVCSPGATCSLNP-SGGYICDDCSLAGSYEHYDRLCRLRA  115 (193)
Q Consensus        75 C~-~pC~~gg~C~~~~-~~~~~C~~C~~g~~~~~~g~~C~~~~  115 (193)
                      |. +||+|||+|++.. ..+|.|. ||++|.    |++||..+
T Consensus         1 C~~nPC~ngG~C~~~~~~~~y~C~-C~~g~~----G~~Ce~~~   38 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYFSDFVCQ-CPEGFA----GKSCEIDT   38 (41)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEEE-CCTTCB----SSSCCBCS
T ss_pred             CcCCCCCCCCEEecCCCCCCeEEC-CCCCCC----CCCcCcCc
Confidence            56 8999999999864 4789999 999999    99998754

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.5e-09  Score=58.87  Aligned_cols=36  Identities=25%  Similarity=0.559  Sum_probs=32.8

Q ss_pred             CCCC-CCCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          73 SDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        73 ~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      +.|. +||.|+|+|++.. ++|+|. |+++|.    |++|+..
T Consensus         2 ~~C~~~pC~ngg~C~~~~-~~y~C~-C~~g~~----G~~Ce~~   38 (40)
T d1g1sa2           2 ASCQDMSCSKQGECLETI-GNYTCS-CYPGFY----GPECEYV   38 (40)
T ss_dssp             CCCCTTGGGGSEEEEECS-SSEEEE-ECTTEE----STTSCEE
T ss_pred             CcccCCcCCCCcEEECCC-CCeEEe-CCCCcc----CCCCCCC
Confidence            3788 9999999999987 999999 999998    9999864

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.62  E-value=6.7e-09  Score=57.70  Aligned_cols=35  Identities=26%  Similarity=0.517  Sum_probs=30.7

Q ss_pred             CCC-CCCCCCcEEeeCCCCceecccCCC-CCCccccccccce
Q psy2060          74 DCK-GVCSPGATCSLNPSGGYICDDCSL-AGSYEHYDRLCRL  113 (193)
Q Consensus        74 ~C~-~pC~~gg~C~~~~~~~~~C~~C~~-g~~~~~~g~~C~~  113 (193)
                      +|. +||+|+|+|++...++|+|. |+. ||.    |.+|++
T Consensus         4 ~C~~nPC~ngG~C~~~~~~~y~C~-C~~~G~~----G~~Ce~   40 (42)
T d1q4ga2           4 PCCYYPCQHQGICVRFGLDRYQCD-CTRTGYS----GPNCTI   40 (42)
T ss_dssp             GGGGCCCCTTCEEEEETTTEEEEE-CTTSSEE----TTTTCE
T ss_pred             cCcCCCCCCCCEeeeCCCCCEEEE-CCCCCcC----CcCcCc
Confidence            899 99999999997644899999 986 788    999985

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.1e-08  Score=58.29  Aligned_cols=36  Identities=28%  Similarity=0.682  Sum_probs=32.7

Q ss_pred             CCCC-CCCCCCcEEeeCCCCceecccCCCCCCccccccccceec
Q psy2060          73 SDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRA  115 (193)
Q Consensus        73 ~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~~  115 (193)
                      ++|. +||.| |+|++.. ++|+|. |++||.    |++|+..+
T Consensus         9 ~~C~~~PC~n-G~C~~~~-~~y~C~-C~~G~~----G~~Ce~~I   45 (48)
T d1autl1           9 HPCASLCCGH-GTCIDGI-GSFSCD-CRSGWE----GRFCQREV   45 (48)
T ss_dssp             CSSSSTTTTS-EEECCCS-SCCCEE-ECTTEE----STTSCEEC
T ss_pred             CcccCCCCCC-CEEECCC-CCCeEe-CCCCCc----CCCccccc
Confidence            5999 99998 7999887 999999 999998    99999864

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=1.2e-08  Score=56.36  Aligned_cols=36  Identities=22%  Similarity=0.514  Sum_probs=30.8

Q ss_pred             CCCC-CCCCCCcEEeeCCCCceecccCC-CCCCccccccccce
Q psy2060          73 SDCK-GVCSPGATCSLNPSGGYICDDCS-LAGSYEHYDRLCRL  113 (193)
Q Consensus        73 ~~C~-~pC~~gg~C~~~~~~~~~C~~C~-~g~~~~~~g~~C~~  113 (193)
                      ++|. +||.|+|+|++...++|+|. |+ ++|.    |++|++
T Consensus         2 d~C~~~PC~ngG~C~~~~~~~y~C~-C~~~gy~----G~~Ce~   39 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTGFDQYKCD-CTRTGFY----GENCTT   39 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEE-CTTSSEE----TTTTCE
T ss_pred             CcCcCCCCCCCCEEEECCCCCEEEe-CcCCCcC----CcCcCc
Confidence            4899 99999999997533899999 97 4888    999985

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=4e-07  Score=52.91  Aligned_cols=38  Identities=26%  Similarity=0.591  Sum_probs=31.8

Q ss_pred             CCC-CCCCCCcEEeeCC-CCceecccCCCCCCccccccccceecc
Q psy2060          74 DCK-GVCSPGATCSLNP-SGGYICDDCSLAGSYEHYDRLCRLRAR  116 (193)
Q Consensus        74 ~C~-~pC~~gg~C~~~~-~~~~~C~~C~~g~~~~~~g~~C~~~~~  116 (193)
                      +|. +||.|||+|+... ..+|+|. |+++|.    |++||....
T Consensus         8 ~c~~~~C~NgG~C~~~~~~~~~~C~-C~~gy~----G~~Ce~~~l   47 (53)
T d3egfa_           8 SSYDGYCLNGGVCMHIESLDSYTCN-CVIGYS----GDRCQTRDL   47 (53)
T ss_dssp             TTSSCCSCSSCEEEEESSSSCEEEE-CCTTCC----SSSSCCCSC
T ss_pred             CCCCCCCCCCcEeeccCCCCCeEeE-CCCCCc----CCCCccCCc
Confidence            666 9999999998643 3789999 999999    999987543

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=2e-07  Score=56.35  Aligned_cols=37  Identities=19%  Similarity=0.540  Sum_probs=30.8

Q ss_pred             CCC-CCCCCCcEEeeC----CCCceecccCCCCCCccccccccceec
Q psy2060          74 DCK-GVCSPGATCSLN----PSGGYICDDCSLAGSYEHYDRLCRLRA  115 (193)
Q Consensus        74 ~C~-~pC~~gg~C~~~----~~~~~~C~~C~~g~~~~~~g~~C~~~~  115 (193)
                      +|. +||.|||+|...    ..++|.|. |+++|+    |.+|+..+
T Consensus         8 ec~~~~C~NgG~C~~~~~~~~~~~y~C~-C~~gy~----G~~Ce~~~   49 (63)
T d1haea_           8 EKEKTFCVNGGECFMVKDLSNPSRYLCK-CQPGFT----GARCTENV   49 (63)
T ss_dssp             HHHHTTSCTTCEEEEEESSSSSCCEEEE-CCTTEE----STTSCEEC
T ss_pred             CCcCCcCCCCCEEeecccccCCCCEEeE-CCCCCC----CCCcCCCC
Confidence            677 999999999632    13789999 999999    99999863

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2.7e-07  Score=52.55  Aligned_cols=37  Identities=22%  Similarity=0.525  Sum_probs=31.5

Q ss_pred             CCC-CCCCCCcEEeeCC-CCceecccCCCCCCccccccccceec
Q psy2060          74 DCK-GVCSPGATCSLNP-SGGYICDDCSLAGSYEHYDRLCRLRA  115 (193)
Q Consensus        74 ~C~-~pC~~gg~C~~~~-~~~~~C~~C~~g~~~~~~g~~C~~~~  115 (193)
                      +|. +||.|||+|+... ..+|.|. |+.+|+    |.+||...
T Consensus         6 ~c~~~~C~ngG~C~~~~~~~~~~C~-C~~gy~----G~~Ce~~d   44 (48)
T d1nqlb_           6 LSHDGYCLHDGVCMYIEALDKYACN-CVVGYI----GERCQYRD   44 (48)
T ss_dssp             STTCCEECTTCEEEEETTTTEEEEE-ECTTEE----STTSCEEC
T ss_pred             CCCCCCCCCCcEEeeeCCCCCeEEe-CCCCcc----cCCCCcCc
Confidence            677 9999999998654 3789999 999999    99998753

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1e-06  Score=47.75  Aligned_cols=28  Identities=11%  Similarity=0.092  Sum_probs=23.4

Q ss_pred             eecCC--ccCCCCceeeCCCCCCCCccccc
Q psy2060          42 FVDGG--HRTLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        42 ~~~gg--~~~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      +.|||  .+..++|+|.|++||+|.+|+.+
T Consensus         9 C~n~g~C~~~~~~y~C~C~~G~~G~~Ce~d   38 (39)
T d2vj3a2           9 CQNDATCLDQIGEFQCICMPGYEGVHCEVN   38 (39)
T ss_dssp             CCSSCEEEECSSCEEEECCTTEESSSSCEE
T ss_pred             CCCCCEEECCCCCEEEeCCCCCccCcCeeC
Confidence            44566  67788999999999999999864

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.3e-06  Score=46.85  Aligned_cols=31  Identities=19%  Similarity=0.259  Sum_probs=23.8

Q ss_pred             eeecCC--c--cCCCCceeeCCCCCCCCcccccCC
Q psy2060          41 TFVDGG--H--RTLDLLHDMGARYHWGDTCETDIT   71 (193)
Q Consensus        41 ~~~~gg--~--~~~~~~~C~C~~g~~G~~C~~~~~   71 (193)
                      .+.|||  .  ...++|+|.|++||+|.+|+.+++
T Consensus         5 PC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~~~~   39 (41)
T d1tpga1           5 RCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR   39 (41)
T ss_dssp             CSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCSS
T ss_pred             CCCCCCEEecCCCCCCeEECCCCCCCCCCcCcCcC
Confidence            345666  2  335689999999999999998754

>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=4e-06  Score=62.37  Aligned_cols=53  Identities=15%  Similarity=0.208  Sum_probs=36.2

Q ss_pred             cCCCcceEEecCC----------CCCceeEEEEEEEeCCCCeEEEEeecCCCCCceEEE--EecCCe
Q psy2060         117 SFPKNSFLTFPAL----------KQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIAL--ELTDSG  171 (193)
Q Consensus       117 sF~g~syl~~~~~----------~~~~~~~i~~~f~T~~~~glLl~~g~~~~~~dfi~l--~l~~G~  171 (193)
                      -|.|.+|+.|+..          .....+.|+|+|||..++|||||.+.  ...+++.|  .+.+++
T Consensus        19 ~F~G~g~~~~~~~~~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~--~~~~~~~l~~~~~~~~   83 (218)
T d1h30a2          19 FYPGSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWA--PDLRAVPLSVALVDYH   83 (218)
T ss_dssp             EECSSCCEEECCCCBC--------CCBCEEEEEEEEESSSCEEEEEEEE--GGGTEEEEEEEEESCC
T ss_pred             EeCCCEEEEEeccccccccccccccceeEEEEEEEEcCCCCcEEEEEec--CCCceEEEEEEeeEEE
Confidence            3788999888532          11334679999999999999999863  23445544  444554

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=8.8e-07  Score=48.90  Aligned_cols=26  Identities=23%  Similarity=0.197  Sum_probs=22.7

Q ss_pred             ecCC--ccCCCCceeeCCCCCCCCcccc
Q psy2060          43 VDGG--HRTLDLLHDMGARYHWGDTCET   68 (193)
Q Consensus        43 ~~gg--~~~~~~~~C~C~~g~~G~~C~~   68 (193)
                      .++|  .++.++|+|.|++||+|++|+.
T Consensus        14 ~n~g~C~n~~g~y~C~C~~G~~G~~Ce~   41 (42)
T d2vj3a1          14 EHAGKCINTLGSFECQCLQGYTGPRCEI   41 (42)
T ss_dssp             STTCEEEECSSSEEEECCTTEESTTSCE
T ss_pred             CCCcEeECCCCCEEeECCCCCcCCCCcC
Confidence            3456  7889999999999999999985

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.2e-06  Score=47.38  Aligned_cols=28  Identities=18%  Similarity=0.093  Sum_probs=23.7

Q ss_pred             eecCC--ccCCCCceeeCCCCCCCCccccc
Q psy2060          42 FVDGG--HRTLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        42 ~~~gg--~~~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      +.|||  .+..++|.|.|++||+|.+|++.
T Consensus         8 C~ngg~C~~~~~~y~C~C~~G~~G~~Cei~   37 (39)
T d1xkba1           8 CQNQGKCKDGLGEYTCTCLEGFEGKNCELF   37 (39)
T ss_dssp             CCSSCEECCCSSSCCEECCTTEETTTTCEE
T ss_pred             CCCCcEEECCCCCEEEECCCCCCcCcCeEc
Confidence            45666  67778999999999999999865

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.8e-06  Score=46.76  Aligned_cols=27  Identities=19%  Similarity=0.297  Sum_probs=22.5

Q ss_pred             eecCC--ccCCCCceeeCCCCCCCCcccc
Q psy2060          42 FVDGG--HRTLDLLHDMGARYHWGDTCET   68 (193)
Q Consensus        42 ~~~gg--~~~~~~~~C~C~~g~~G~~C~~   68 (193)
                      +.|||  .+..++|.|.|++||+|.+||+
T Consensus        11 C~ngg~C~~~~~~y~C~C~~g~~G~~Cei   39 (39)
T d1edmb_          11 CLNGGSCKDDINSYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             CCTTCEEEEETTEEEEECCTTCCSTTSCC
T ss_pred             CCCCcEEEcCCCCEEEECCCCCCCCCCCC
Confidence            34566  6778899999999999999974

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=9.8e-07  Score=47.85  Aligned_cols=28  Identities=18%  Similarity=0.061  Sum_probs=23.3

Q ss_pred             eecCC--ccCCCCceeeCCCCCCCCccccc
Q psy2060          42 FVDGG--HRTLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        42 ~~~gg--~~~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      +.|||  .+..++|+|.|++||+|.+|+..
T Consensus         9 C~ngg~C~~~~~~~~C~C~~g~~G~~Ce~~   38 (39)
T d1g1ta2           9 CSGHGECVETINNYTCKCDPGFSGLKCEQI   38 (39)
T ss_dssp             GGGSEEEEEETTEEEEEECTTEESTTSCEE
T ss_pred             CCCCcEEECCCCCEEEeCCCCCcCcCcCcc
Confidence            34566  67778999999999999999865

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.84  E-value=1.7e-06  Score=46.24  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=22.0

Q ss_pred             eecCC--ccCCCCceeeCCCCCCCCccc
Q psy2060          42 FVDGG--HRTLDLLHDMGARYHWGDTCE   67 (193)
Q Consensus        42 ~~~gg--~~~~~~~~C~C~~g~~G~~C~   67 (193)
                      +.|||  .+..++|.|.|++||+|.+||
T Consensus        10 C~ngg~C~~~~~~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1          10 CQNGGSCKDQLQSYICFCLPAFEGRNCE   37 (37)
T ss_dssp             CCTTCEEEEETTEEEEECCTTEESTTSC
T ss_pred             CCCCCEEECCCCCeEEECCCCCcCCCCC
Confidence            44566  677889999999999999996

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2.5e-06  Score=45.03  Aligned_cols=26  Identities=12%  Similarity=0.206  Sum_probs=21.8

Q ss_pred             eecCC--ccCCCCceeeCCCCCCCCccc
Q psy2060          42 FVDGG--HRTLDLLHDMGARYHWGDTCE   67 (193)
Q Consensus        42 ~~~gg--~~~~~~~~C~C~~g~~G~~C~   67 (193)
                      +.|||  .+..++|+|.|++||+|.+||
T Consensus         8 C~ngg~C~~~~~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           8 CLHNGRCLDKINEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             STTTCEEEECSSCEEEECCTTEESSSSC
T ss_pred             CCCCcEEECCCCCeEEECCCCCCCCCcC
Confidence            44566  677789999999999999996

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=2.3e-06  Score=47.39  Aligned_cols=36  Identities=25%  Similarity=0.750  Sum_probs=29.3

Q ss_pred             CCC---CCCCCCcEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          74 DCK---GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        74 ~C~---~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      +|.   ..|.+ +.|++.+ ++|+|. |++||.....+..|+
T Consensus         5 EC~~~~~~c~~-~~C~Nt~-Gsy~C~-C~~Gy~l~~~~~~Ce   43 (43)
T d1uzka2           5 ECQELPGLCQG-GKCINTF-GSFQCR-CPTGYYLNEDTRVCD   43 (43)
T ss_dssp             HHHHCGGGGBT-SEEEECS-SCEEEE-CCTTCCBCTTTCBBC
T ss_pred             cccCCCCCcCC-CEEECCC-CCeEeE-CCCCCeECcCCCccC
Confidence            787   56764 6999999 999999 999998766666664

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=9.4e-06  Score=42.26  Aligned_cols=33  Identities=27%  Similarity=0.535  Sum_probs=27.6

Q ss_pred             CCCCCcEEeeCC--CCceecccCCCCCCccccccccceec
Q psy2060          78 VCSPGATCSLNP--SGGYICDDCSLAGSYEHYDRLCRLRA  115 (193)
Q Consensus        78 pC~~gg~C~~~~--~~~~~C~~C~~g~~~~~~g~~C~~~~  115 (193)
                      .|.|||+|+...  .+-.+|. ||.+|.    |.+||..+
T Consensus         3 ~ClNGG~Cvsyk~FS~I~rC~-CPk~f~----G~HCEiDt   37 (40)
T d2i9aa1           3 DCLNGGTCVSNKYFSNIHWCN-CPKKFG----GQHCEIDK   37 (40)
T ss_dssp             CCCTTCEEEECSSSTTCEEEE-CCTTEE----STTSCEES
T ss_pred             ccccCCEEEEEehhcCCEEec-CCcccC----ceeEEecc
Confidence            489999999752  4778899 999998    99999764

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=3.3e-06  Score=45.93  Aligned_cols=28  Identities=18%  Similarity=0.137  Sum_probs=23.4

Q ss_pred             eecCC--ccCCCCceeeCCCCCCCCccccc
Q psy2060          42 FVDGG--HRTLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        42 ~~~gg--~~~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      +.|||  .+..++|+|.|++||+|.+|+..
T Consensus         9 C~ngg~C~~~~~~y~C~C~~g~~G~~Ce~~   38 (40)
T d1g1sa2           9 CSKQGECLETIGNYTCSCYPGFYGPECEYV   38 (40)
T ss_dssp             GGGSEEEEECSSSEEEEECTTEESTTSCEE
T ss_pred             CCCCcEEECCCCCeEEeCCCCccCCCCCCC
Confidence            44566  67778999999999999999865

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=6.3e-06  Score=45.51  Aligned_cols=36  Identities=22%  Similarity=0.564  Sum_probs=28.9

Q ss_pred             CCCC-CCCCCCcEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          73 SDCK-GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        73 ~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      ++|. .++...+.|++.+ ++|.|. |++||...  |..|+
T Consensus         6 dEC~~~~~~~~~~C~Nt~-Gsy~C~-C~~Gy~~~--g~~C~   42 (43)
T d1emoa1           6 DECKEPDVCKHGQCINTD-GSYRCE-CPFGYILA--GNECV   42 (43)
T ss_dssp             CSSSSTTSCSSSCCCCCS-SCCCCC-CCTTEEES--SSCEE
T ss_pred             eccCCcCCCCCCEeECCC-CCeEeE-CCCCcccC--CCccc
Confidence            4999 6566678999998 999999 99998753  66664

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1e-05  Score=46.04  Aligned_cols=35  Identities=14%  Similarity=0.147  Sum_probs=29.9

Q ss_pred             CCCCCCcEEeeCCCCceecccCCCCCCccccccccceecc
Q psy2060          77 GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRAR  116 (193)
Q Consensus        77 ~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~~~  116 (193)
                      ++|.||+.|.......+.|. |+.+|.    |.+||....
T Consensus        14 ~yC~nGgcc~~~~~~~~~C~-C~~gy~----G~rCe~~~l   48 (50)
T d1ioxa_          14 HYCIKGRCRFVVAEQTPSCV-CDEGYI----GARCERVDL   48 (50)
T ss_dssp             TSCTTCCEEEETTTTEEEEC-CCTTEE----TTTTCEECC
T ss_pred             CCccCCeEEEeCCCCCcEeE-CCCCCe----eCCCcccee
Confidence            89999999976555889999 999999    999997643

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=7.4e-06  Score=44.99  Aligned_cols=35  Identities=26%  Similarity=0.755  Sum_probs=27.1

Q ss_pred             CCC---CCCCCCcEEeeCCCCceecccCCCCCCcccccccc
Q psy2060          74 DCK---GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLC  111 (193)
Q Consensus        74 ~C~---~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C  111 (193)
                      +|.   ..|. .+.|++.+ ++|+|. |++||.....+..|
T Consensus         4 EC~~~~~~C~-~~~C~Nt~-Gsy~C~-C~~Gy~l~~d~~~C   41 (42)
T d1lmja2           4 ECQRDPLLCR-GGVCHNTE-GSYRCE-CPPGHQLSPNISAC   41 (42)
T ss_dssp             HHHHCSSTTT-TSEEEEET-TEEEEE-SCTTSCCCSSSCCC
T ss_pred             ccCCCCCCCC-CCEeECCC-CCeEEe-CCCCCeECcCCCcc
Confidence            776   5675 47999999 999999 99999864444444

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.2e-05  Score=43.92  Aligned_cols=36  Identities=28%  Similarity=0.755  Sum_probs=30.1

Q ss_pred             CCC--CCCCCCcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          74 DCK--GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        74 ~C~--~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      +|.  .+|.+  .|++.+ ++|+|. |++||....++..|+.
T Consensus         3 EC~~~~~C~~--~C~n~~-Gsy~C~-C~~Gy~L~~d~~~C~a   40 (41)
T d1i0ua2           3 ECQDPDTCSQ--LCVNLE-GGYKCQ-CEEGFQLDPHTKACKA   40 (41)
T ss_dssp             TTTTTTSCSS--CEECSS-SCCEEC-CCTTEEECTTTCCEEE
T ss_pred             cCCCCCCCCC--EeECCC-CCEEeE-CCCCCeECCCCCcccc
Confidence            787  78865  899998 999999 9999987767777753

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=2.3e-05  Score=45.17  Aligned_cols=36  Identities=25%  Similarity=0.318  Sum_probs=26.2

Q ss_pred             cCCCCccCCCCcceeecCC----ccCCCCceeeCCCCCCCCccccc
Q psy2060          28 GLPDNEGLEKRVQTFVDGG----HRTLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        28 C~~g~~g~~~~c~~~~~gg----~~~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      |+|-+.+.      +.|||    .....+|+|.|++||+|.+||..
T Consensus         6 C~~c~~~~------C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce~~   45 (53)
T d3egfa_           6 CPSSYDGY------CLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR   45 (53)
T ss_dssp             CCTTSSCC------SCSSCEEEEESSSSCEEEECCTTCCSSSSCCC
T ss_pred             CCCCCCCC------CCCCcEeeccCCCCCeEeECCCCCcCCCCccC
Confidence            55555443      44666    24556899999999999999975

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.3e-05  Score=44.18  Aligned_cols=36  Identities=31%  Similarity=0.720  Sum_probs=28.4

Q ss_pred             CCC--CCCCCCcEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          74 DCK--GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        74 ~C~--~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      +|.  ..|. .+.|++.+ ++|.|. |++||.....+..|.
T Consensus         5 EC~~~~~~c-~~~C~Nt~-G~y~C~-C~~Gy~l~~d~~~C~   42 (43)
T d1uzka1           5 ECLDPTTCI-SGNCVNTP-GSYICD-CPPDFELNPTRVGCV   42 (43)
T ss_dssp             GGGSTTSSB-TSEEEEET-TEEEEE-CCTTCEECTTSSBEE
T ss_pred             ccCCCCcCc-CCEeECCC-CCEEEe-cCCCCEECCCCCccc
Confidence            887  4443 47999999 999999 999997665566664

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.3e-05  Score=44.37  Aligned_cols=28  Identities=25%  Similarity=0.845  Sum_probs=24.1

Q ss_pred             CCC---CCCCCCcEEeeCCCCceecccCCCCCCc
Q psy2060          74 DCK---GVCSPGATCSLNPSGGYICDDCSLAGSY  104 (193)
Q Consensus        74 ~C~---~pC~~gg~C~~~~~~~~~C~~C~~g~~~  104 (193)
                      +|.   .+|.+ +.|++.+ ++|+|. |++||..
T Consensus         5 EC~~~~~~C~~-~~C~Nt~-Gsy~C~-C~~Gy~~   35 (44)
T d1lmja1           5 ECRISPDLCGR-GQCVNTP-GDFECK-CDEGYES   35 (44)
T ss_dssp             TTTTCSSTTTT-SCEEEET-TEEEEC-CCSSEEE
T ss_pred             ccCCCCCCCCC-CEeEcCC-CCeEEe-CCCCCcc
Confidence            898   56764 7899998 999999 9999874

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=2.7e-05  Score=46.52  Aligned_cols=24  Identities=8%  Similarity=0.029  Sum_probs=20.8

Q ss_pred             cCCCCceeeCCCCCCCCcccccCC
Q psy2060          48 RTLDLLHDMGARYHWGDTCETDIT   71 (193)
Q Consensus        48 ~~~~~~~C~C~~g~~G~~C~~~~~   71 (193)
                      +..++|.|.|++||+|.+|+..+.
T Consensus        27 ~~~~~y~C~C~~gy~G~~Ce~~~~   50 (63)
T d1haea_          27 SNPSRYLCKCQPGFTGARCTENVP   50 (63)
T ss_dssp             SSSCCEEEECCTTEESTTSCEECC
T ss_pred             cCCCCEEeECCCCCCCCCcCCCCC
Confidence            456789999999999999998764

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=4.1e-05  Score=44.06  Aligned_cols=29  Identities=24%  Similarity=0.600  Sum_probs=24.3

Q ss_pred             CcEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          82 GATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        82 gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      ...|++.+ ++|.|. |++||.+..++..|+
T Consensus        23 ~~~C~Nt~-GsY~C~-C~~Gy~l~~d~~tC~   51 (53)
T d1apqa_          23 QHLCHNYV-GGYFCS-CRPGYELQEDRHSCQ   51 (53)
T ss_dssp             SSEEEEET-TEEEEE-CSTTCEECTTSSCEE
T ss_pred             cCEeEcCC-CCeEeE-CCCCCeECCCCCcee
Confidence            34899999 999999 999998666677775

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=2.3e-05  Score=44.24  Aligned_cols=28  Identities=18%  Similarity=0.186  Sum_probs=22.2

Q ss_pred             eecCC----ccCCCCceeeCCCCCCCCccccc
Q psy2060          42 FVDGG----HRTLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        42 ~~~gg----~~~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      +.|||    .....+|+|.|++||+|.+|+..
T Consensus        12 C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce~~   43 (48)
T d1nqlb_          12 CLHDGVCMYIEALDKYACNCVVGYIGERCQYR   43 (48)
T ss_dssp             ECTTCEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred             CCCCcEEeeeCCCCCeEEeCCCCcccCCCCcC
Confidence            45677    23456899999999999999865

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=2.1e-05  Score=44.30  Aligned_cols=25  Identities=8%  Similarity=0.073  Sum_probs=21.9

Q ss_pred             ccCCCCceeeCCCCCCCCcccccCC
Q psy2060          47 HRTLDLLHDMGARYHWGDTCETDIT   71 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~G~~C~~~~~   71 (193)
                      .+..++|+|.|++||+|.+|+.++.
T Consensus        22 ~~~~~~y~C~C~~G~~G~~Ce~~I~   46 (48)
T d1autl1          22 IDGIGSFSCDCRSGWEGRFCQREVS   46 (48)
T ss_dssp             CCCSSCCCEEECTTEESTTSCEECC
T ss_pred             ECCCCCCeEeCCCCCcCCCcccccC
Confidence            5667899999999999999998763

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=3.5e-05  Score=43.53  Aligned_cols=33  Identities=18%  Similarity=0.257  Sum_probs=28.1

Q ss_pred             CCCCCCcEEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          77 GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        77 ~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      +.|.||+.|.......+.|. |+.+|.    |.+||..
T Consensus        13 ~yClnGgcc~~~~~~~~~C~-C~~gy~----G~RCe~~   45 (49)
T d1moxc_          13 QFCFHGTCRFLVQEDKPACV-CHSGYV----GARCEHA   45 (49)
T ss_dssp             CSSTTEEEEEETTTTEEEEE-ECTTEE----STTSCEE
T ss_pred             CEeeCCeEEecCCCCCcEeE-CCCCCE----ecCCccc
Confidence            88999998865444889999 999998    9999875

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.33  E-value=5.2e-05  Score=42.09  Aligned_cols=29  Identities=24%  Similarity=0.614  Sum_probs=24.8

Q ss_pred             CcEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          82 GATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        82 gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      ...|++.+ ++|+|. |++||....+++.|+
T Consensus        15 ~~~C~Nt~-gsy~C~-C~~Gy~L~~d~~tC~   43 (45)
T d1nt0a3          15 DHYCHNYL-GGYYCS-CRVGYILHQNKHTCS   43 (45)
T ss_dssp             SSEEEEET-TEEEEE-CCTTEEECTTSSCEE
T ss_pred             CCEeecCC-CCEEEe-CCCCCEECCCCCccc
Confidence            45999999 999999 999998776777775

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=8e-05  Score=41.29  Aligned_cols=30  Identities=23%  Similarity=0.594  Sum_probs=25.3

Q ss_pred             CcEEeeCCCCceecccCCCCCCccccccccce
Q psy2060          82 GATCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        82 gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      ...|++.+ ++|+|. |+.||....+++.|+.
T Consensus        15 ~~~C~Nt~-Gsy~C~-C~~Gy~l~~d~~tC~D   44 (45)
T d1szba2          15 DHHCHNHL-GGFYCS-CRAGYVLHRNKRTCSE   44 (45)
T ss_dssp             SSEEEEET-TEEEEE-CCTTEEECTTSSCEEE
T ss_pred             CCCCccCC-CCeEEE-CCCCCeECCCCCCccC
Confidence            45999999 999999 9999987767777753

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.0001  Score=40.15  Aligned_cols=32  Identities=28%  Similarity=0.532  Sum_probs=26.8

Q ss_pred             CCCCCCcEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          77 GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        77 ~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      .+|.+  .|++.+ ++|+|. |+.||....+++.|.
T Consensus         9 ~~C~~--~C~n~~-Gsy~C~-C~~Gy~L~~d~~tC~   40 (42)
T d1nzia2           9 VPCSH--FCNNFI-GGYFCS-CPPEYFLHDDMKNCG   40 (42)
T ss_dssp             CCSSS--EEEEET-TEEEEE-CCTTCEECTTSSCEE
T ss_pred             cCCCC--EeecCC-CCEEEe-CCCCCEECCCCCeec
Confidence            46765  899998 999999 999998777777774

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=6.6e-05  Score=41.75  Aligned_cols=36  Identities=17%  Similarity=0.013  Sum_probs=25.8

Q ss_pred             cCCCCccCCCCcceeecCC---ccCCCCceeeCCCCCCCCccccc
Q psy2060          28 GLPDNEGLEKRVQTFVDGG---HRTLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        28 C~~g~~g~~~~c~~~~~gg---~~~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      |++.+.+-      ++||+   ......+.|.|++||+|..|++-
T Consensus         6 C~~~~~~y------C~nG~C~~~~~~~~~~C~C~~gY~G~RCe~~   44 (46)
T d1k36a_           6 CSSDMNGY------CLHGQCIYLVDMSQNYCRCEVGYTGVRCEHF   44 (46)
T ss_dssp             CCTTCCSS------CSSEEEEEETTTTEEEEEECTTCSSTTSCCC
T ss_pred             CCCcCCCc------CcCCEEEEeCCCCccEeECCCCceecCceee
Confidence            55555443      44555   34556899999999999999864

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=5.2e-05  Score=40.84  Aligned_cols=28  Identities=32%  Similarity=0.899  Sum_probs=24.1

Q ss_pred             CCC--CCCCCCcEEeeCCCCceecccCCCCCCcc
Q psy2060          74 DCK--GVCSPGATCSLNPSGGYICDDCSLAGSYE  105 (193)
Q Consensus        74 ~C~--~pC~~gg~C~~~~~~~~~C~~C~~g~~~~  105 (193)
                      +|.  .+|.  ..|++.+ ++|+|. |++||...
T Consensus         4 EC~~~~~C~--~~C~N~~-Gsy~C~-C~~Gy~l~   33 (40)
T d1dx5i3           4 ECENGGFCS--GVCHNLP-GTFECI-CGPDSALA   33 (40)
T ss_dssp             HHHHCSSCS--SEEEECS-SSEEEE-ECSSSSCE
T ss_pred             ccCCCcCcc--CEeeCCC-CCeEeE-CCCCCeeC
Confidence            777  7886  4999998 999999 99999853

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.17  E-value=5.8e-05  Score=40.72  Aligned_cols=32  Identities=28%  Similarity=0.552  Sum_probs=27.4

Q ss_pred             CCCCCCcEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          77 GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        77 ~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      +.|...+.|++.+ ++|.|. |++||.+.  |..|.
T Consensus         7 ~~C~~~A~C~Nt~-Gsy~C~-C~~Gy~Gd--G~~C~   38 (40)
T d1gl4a2           7 HQCSVHAECRDYA-TGFCCR-CVANYTGN--GRQCV   38 (40)
T ss_dssp             GGSCTTEEEEECS-SCEEEE-ECTTEEEC--SSSEE
T ss_pred             CCCCCCCEeecCC-CCeEeE-CCCCCcCC--CCEee
Confidence            5788889999998 999999 99999865  77664

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00017  Score=40.06  Aligned_cols=32  Identities=19%  Similarity=0.434  Sum_probs=25.4

Q ss_pred             CCCCCCcEEeeC-CCCceecccCCCCCCcccccccccee
Q psy2060          77 GVCSPGATCSLN-PSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        77 ~pC~~gg~C~~~-~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      ++|.| |.|... ....+.|. |+.+|.    |.+||..
T Consensus        12 ~yC~n-G~C~~~~~~~~~~C~-C~~gY~----G~RCe~~   44 (46)
T d1k36a_          12 GYCLH-GQCIYLVDMSQNYCR-CEVGYT----GVRCEHF   44 (46)
T ss_dssp             SSCSS-EEEEEETTTTEEEEE-ECTTCS----STTSCCC
T ss_pred             CcCcC-CEEEEeCCCCccEeE-CCCCce----ecCceee
Confidence            89999 556532 23789999 999999    9999864

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00017  Score=38.86  Aligned_cols=35  Identities=31%  Similarity=0.599  Sum_probs=27.5

Q ss_pred             CCCC---CCCCCCcEEeeCCCCceecccCCCCCCccccccccc
Q psy2060          73 SDCK---GVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCR  112 (193)
Q Consensus        73 ~~C~---~pC~~gg~C~~~~~~~~~C~~C~~g~~~~~~g~~C~  112 (193)
                      ++|.   ..|.+  .|++.+ ++|+|. |++||.. .++..|+
T Consensus         3 neC~~~nggC~h--~C~n~~-g~~~C~-C~~Gy~L-~d~~tC~   40 (40)
T d3bpse1           3 NECLDNNGGCSH--VCNDLK-IGYECL-CPDGFQL-VAQRRCE   40 (40)
T ss_dssp             CGGGTGGGGCSS--EEEECS-SSEEEE-CCTTCCE-ETTTEEC
T ss_pred             ccCCCCCCCCcC--EEEcCC-CCEEEE-CCCCCEE-CCCCcCC
Confidence            3676   56765  999998 999999 9999986 3566663

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=97.03  E-value=8.1e-05  Score=40.62  Aligned_cols=28  Identities=25%  Similarity=0.205  Sum_probs=21.6

Q ss_pred             eecCC--cc-CCCCceeeCCC-CCCCCccccc
Q psy2060          42 FVDGG--HR-TLDLLHDMGAR-YHWGDTCETD   69 (193)
Q Consensus        42 ~~~gg--~~-~~~~~~C~C~~-g~~G~~C~~~   69 (193)
                      +.|||  .+ ..++|.|.|++ ||+|.+|++.
T Consensus        10 C~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~p   41 (42)
T d1q4ga2          10 CQHQGICVRFGLDRYQCDCTRTGYSGPNCTIP   41 (42)
T ss_dssp             CCTTCEEEEETTTEEEEECTTSSEETTTTCEE
T ss_pred             CCCCCEeeeCCCCCEEEECCCCCcCCcCcCcC
Confidence            45667  43 35789999986 8999999864

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=9.7e-05  Score=41.81  Aligned_cols=36  Identities=11%  Similarity=0.005  Sum_probs=26.9

Q ss_pred             cCCCCccCCCCcceeecCC---ccCCCCceeeCCCCCCCCccccc
Q psy2060          28 GLPDNEGLEKRVQTFVDGG---HRTLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        28 C~~g~~g~~~~c~~~~~gg---~~~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      |++.+.+-      ++|||   ......+.|.|++||+|..||..
T Consensus         8 C~~~~~~y------C~nGgcc~~~~~~~~~C~C~~gy~G~rCe~~   46 (50)
T d1ioxa_           8 CPKQYKHY------CIKGRCRFVVAEQTPSCVCDEGYIGARCERV   46 (50)
T ss_dssp             CCGGGTTS------CTTCCEEEETTTTEEEECCCTTEETTTTCEE
T ss_pred             cCcccCCC------ccCCeEEEeCCCCCcEeECCCCCeeCCCccc
Confidence            66655443      45777   45556799999999999999864

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=8.8e-05  Score=41.80  Aligned_cols=36  Identities=14%  Similarity=0.028  Sum_probs=26.6

Q ss_pred             cCCCCccCCCCcceeecCC---ccCCCCceeeCCCCCCCCccccc
Q psy2060          28 GLPDNEGLEKRVQTFVDGG---HRTLDLLHDMGARYHWGDTCETD   69 (193)
Q Consensus        28 C~~g~~g~~~~c~~~~~gg---~~~~~~~~C~C~~g~~G~~C~~~   69 (193)
                      |++.+.+-      ++|||   ......++|.|++||+|..||..
T Consensus         7 C~~~~~~y------ClnGgcc~~~~~~~~~C~C~~gy~G~RCe~~   45 (49)
T d1moxc_           7 CPDSHTQF------CFHGTCRFLVQEDKPACVCHSGYVGARCEHA   45 (49)
T ss_dssp             CCCCSSCS------STTEEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred             cCcccCCE------eeCCeEEecCCCCCcEeECCCCCEecCCccc
Confidence            66666443      45677   34456799999999999999864

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=8.8e-05  Score=40.25  Aligned_cols=28  Identities=18%  Similarity=0.285  Sum_probs=21.4

Q ss_pred             eecCC--cc-CCCCceeeCC-CCCCCCccccc
Q psy2060          42 FVDGG--HR-TLDLLHDMGA-RYHWGDTCETD   69 (193)
Q Consensus        42 ~~~gg--~~-~~~~~~C~C~-~g~~G~~C~~~   69 (193)
                      +.|||  .+ ..++|+|.|+ +||+|.+|++.
T Consensus         9 C~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce~p   40 (41)
T d1cvua2           9 CQNRGECMSTGFDQYKCDCTRTGFYGENCTTP   40 (41)
T ss_dssp             CCTTCEEEEEETTEEEEECTTSSEETTTTCEE
T ss_pred             CCCCCEEEECCCCCEEEeCcCCCcCCcCcCcC
Confidence            45666  44 3568999997 69999999864

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0003  Score=36.14  Aligned_cols=29  Identities=28%  Similarity=0.685  Sum_probs=24.7

Q ss_pred             CCCC--CCCCCCcEEeeCCCCceecccCCCCCCc
Q psy2060          73 SDCK--GVCSPGATCSLNPSGGYICDDCSLAGSY  104 (193)
Q Consensus        73 ~~C~--~pC~~gg~C~~~~~~~~~C~~C~~g~~~  104 (193)
                      ++|.  +||.| |+|.+.. ++|.|. |..||..
T Consensus         2 dECsignpCGn-GTCtNvi-GgFec~-C~~GFep   32 (39)
T d1emoa2           2 DECSVGNPCGN-GTCKNVI-GGFECT-CEEGFEP   32 (39)
T ss_dssp             CGGGTTCSSSS-SCEEECS-SSEEEC-CSSSSCC
T ss_pred             CccccCCccCC-ceeeecc-cceEEe-ecCCcCC
Confidence            3787  99988 7899987 999999 9888763

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0004  Score=35.96  Aligned_cols=29  Identities=21%  Similarity=0.318  Sum_probs=21.4

Q ss_pred             eecCC----c-cCCCCceeeCCCCCCCCcccccC
Q psy2060          42 FVDGG----H-RTLDLLHDMGARYHWGDTCETDI   70 (193)
Q Consensus        42 ~~~gg----~-~~~~~~~C~C~~g~~G~~C~~~~   70 (193)
                      ++|||    . -..+=.+|.||.+|.|.+||.+-
T Consensus         4 ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCEiDt   37 (40)
T d2i9aa1           4 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK   37 (40)
T ss_dssp             CCTTCEEEECSSSTTCEEEECCTTEESTTSCEES
T ss_pred             cccCCEEEEEehhcCCEEecCCcccCceeEEecc
Confidence            56677    1 12344689999999999999864

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.001  Score=36.16  Aligned_cols=16  Identities=6%  Similarity=-0.103  Sum_probs=15.2

Q ss_pred             ccCCCCceeeCCCCCC
Q psy2060          47 HRTLDLLHDMGARYHW   62 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~   62 (193)
                      .|++|+|+|.|++||.
T Consensus        19 ~Nt~Gsy~C~C~~Gy~   34 (43)
T d1uzka2          19 INTFGSFQCRCPTGYY   34 (43)
T ss_dssp             EECSSCEEEECCTTCC
T ss_pred             ECCCCCeEeECCCCCe
Confidence            7999999999999997

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0012  Score=37.57  Aligned_cols=16  Identities=6%  Similarity=-0.346  Sum_probs=15.1

Q ss_pred             ccCCCCceeeCCCCCC
Q psy2060          47 HRTLDLLHDMGARYHW   62 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~   62 (193)
                      .|++|+|+|.|++||+
T Consensus        27 ~Nt~GsY~C~C~~Gy~   42 (53)
T d1apqa_          27 HNYVGGYFCSCRPGYE   42 (53)
T ss_dssp             EEETTEEEEECSTTCE
T ss_pred             EcCCCCeEeECCCCCe
Confidence            6999999999999997

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0012  Score=35.85  Aligned_cols=20  Identities=15%  Similarity=-0.042  Sum_probs=16.9

Q ss_pred             ccCCCCceeeCCCCCC--CCcc
Q psy2060          47 HRTLDLLHDMGARYHW--GDTC   66 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~--G~~C   66 (193)
                      .|++|+|.|.|++||+  |..|
T Consensus        20 ~Nt~Gsy~C~C~~Gy~~~g~~C   41 (43)
T d1emoa1          20 INTDGSYRCECPFGYILAGNEC   41 (43)
T ss_dssp             CCCSSCCCCCCCTTEEESSSCE
T ss_pred             ECCCCCeEeECCCCcccCCCcc
Confidence            6999999999999997  4444

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0021  Score=34.31  Aligned_cols=17  Identities=6%  Similarity=-0.197  Sum_probs=15.6

Q ss_pred             ccCCCCceeeCCCCCCC
Q psy2060          47 HRTLDLLHDMGARYHWG   63 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~G   63 (193)
                      .|++++|+|.|++||+.
T Consensus        16 ~N~~Gsy~C~C~~Gy~l   32 (40)
T d1dx5i3          16 HNLPGTFECICGPDSAL   32 (40)
T ss_dssp             EECSSSEEEEECSSSSC
T ss_pred             eCCCCCeEeECCCCCee
Confidence            69999999999999984

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.68  E-value=0.0011  Score=35.43  Aligned_cols=17  Identities=6%  Similarity=-0.279  Sum_probs=15.4

Q ss_pred             ccCCCCceeeCCCCCCC
Q psy2060          47 HRTLDLLHDMGARYHWG   63 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~G   63 (193)
                      .|++++|.|.|++||+|
T Consensus        16 ~Nt~Gsy~C~C~~Gy~G   32 (40)
T d1gl4a2          16 RDYATGFCCRCVANYTG   32 (40)
T ss_dssp             EECSSCEEEEECTTEEE
T ss_pred             ecCCCCeEeECCCCCcC
Confidence            68899999999999985

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0018  Score=34.96  Aligned_cols=17  Identities=18%  Similarity=-0.160  Sum_probs=15.6

Q ss_pred             ccCCCCceeeCCCCCCC
Q psy2060          47 HRTLDLLHDMGARYHWG   63 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~G   63 (193)
                      .|++++|+|.|++||..
T Consensus        18 ~Nt~Gsy~C~C~~Gy~l   34 (42)
T d1lmja2          18 HNTEGSYRCECPPGHQL   34 (42)
T ss_dssp             EEETTEEEEESCTTSCC
T ss_pred             ECCCCCeEEeCCCCCeE
Confidence            69999999999999973

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0022  Score=34.43  Aligned_cols=16  Identities=0%  Similarity=-0.456  Sum_probs=14.9

Q ss_pred             ccCCCCceeeCCCCCC
Q psy2060          47 HRTLDLLHDMGARYHW   62 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~   62 (193)
                      .|+.++|+|.|++||.
T Consensus        15 ~n~~Gsy~C~C~~Gy~   30 (41)
T d1i0ua2          15 VNLEGGYKCQCEEGFQ   30 (41)
T ss_dssp             ECSSSCCEECCCTTEE
T ss_pred             ECCCCCEEeECCCCCe
Confidence            6889999999999997

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0027  Score=34.25  Aligned_cols=16  Identities=0%  Similarity=-0.222  Sum_probs=14.9

Q ss_pred             ccCCCCceeeCCCCCC
Q psy2060          47 HRTLDLLHDMGARYHW   62 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~   62 (193)
                      .|++++|+|.|++||.
T Consensus        16 ~n~~Gsy~C~C~~Gy~   31 (42)
T d1nzia2          16 NNFIGGYFCSCPPEYF   31 (42)
T ss_dssp             EEETTEEEEECCTTCE
T ss_pred             ecCCCCEEEeCCCCCE
Confidence            6899999999999996

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0016  Score=35.50  Aligned_cols=19  Identities=5%  Similarity=-0.377  Sum_probs=16.8

Q ss_pred             ccCCCCceeeCCCCCCCCc
Q psy2060          47 HRTLDLLHDMGARYHWGDT   65 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~G~~   65 (193)
                      .|++|+|.|.|++||.+..
T Consensus        19 ~Nt~Gsy~C~C~~Gy~~~~   37 (44)
T d1lmja1          19 VNTPGDFECKCDEGYESGF   37 (44)
T ss_dssp             EEETTEEEECCCSSEEECT
T ss_pred             EcCCCCeEEeCCCCCccCC
Confidence            6999999999999998653

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0034  Score=33.59  Aligned_cols=31  Identities=16%  Similarity=0.319  Sum_probs=25.2

Q ss_pred             CCCCCCcEEeeCC-CCceecccCCCCCCccccccccce
Q psy2060          77 GVCSPGATCSLNP-SGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        77 ~pC~~gg~C~~~~-~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      +.|.| |+|.-.. ...+.|. |+.+|.    |.+|+.
T Consensus         8 ~yCih-G~C~~i~~l~~~~C~-C~~gY~----G~RCq~   39 (41)
T d1xdtr_           8 DFCIH-GECKYVKELRAPSCI-CHPGYH----GERCHG   39 (41)
T ss_dssp             TCCSS-EEECCBGGGTBCCEE-ECTTEE----STTCCE
T ss_pred             CEeEC-cEEeecCcCCCceeE-CCCCCe----ecCccc
Confidence            67898 9997443 2778899 999999    999975

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.01  E-value=0.0024  Score=35.00  Aligned_cols=16  Identities=13%  Similarity=-0.315  Sum_probs=14.8

Q ss_pred             ccCCCCceeeCCCCCC
Q psy2060          47 HRTLDLLHDMGARYHW   62 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~   62 (193)
                      .|+.++|+|.|++||.
T Consensus        19 ~Nt~gsy~C~C~~Gy~   34 (45)
T d1nt0a3          19 HNYLGGYYCSCRVGYI   34 (45)
T ss_dssp             EEETTEEEEECCTTEE
T ss_pred             ecCCCCEEEeCCCCCE
Confidence            6889999999999996

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0039  Score=33.72  Aligned_cols=16  Identities=6%  Similarity=-0.448  Sum_probs=14.9

Q ss_pred             ccCCCCceeeCCCCCC
Q psy2060          47 HRTLDLLHDMGARYHW   62 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~   62 (193)
                      .|++++|.|.|++||.
T Consensus        18 ~Nt~G~y~C~C~~Gy~   33 (43)
T d1uzka1          18 VNTPGSYICDCPPDFE   33 (43)
T ss_dssp             EEETTEEEEECCTTCE
T ss_pred             ECCCCCEEEecCCCCE
Confidence            6999999999999995

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.0058  Score=32.49  Aligned_cols=16  Identities=0%  Similarity=-0.402  Sum_probs=14.8

Q ss_pred             ccCCCCceeeCCCCCC
Q psy2060          47 HRTLDLLHDMGARYHW   62 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~   62 (193)
                      .|++++|+|.|++||.
T Consensus        17 ~n~~g~~~C~C~~Gy~   32 (40)
T d3bpse1          17 NDLKIGYECLCPDGFQ   32 (40)
T ss_dssp             EECSSSEEEECCTTCC
T ss_pred             EcCCCCEEEECCCCCE
Confidence            6889999999999996

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.004  Score=33.29  Aligned_cols=20  Identities=15%  Similarity=0.142  Sum_probs=16.7

Q ss_pred             CCCCceeeCCCCCCCCcccc
Q psy2060          49 TLDLLHDMGARYHWGDTCET   68 (193)
Q Consensus        49 ~~~~~~C~C~~g~~G~~C~~   68 (193)
                      ....+.|+|++||+|..|+.
T Consensus        20 ~l~~~~C~C~~gY~G~RCq~   39 (41)
T d1xdtr_          20 ELRAPSCICHPGYHGERCHG   39 (41)
T ss_dssp             GGTBCCEEECTTEESTTCCE
T ss_pred             cCCCceeECCCCCeecCccc
Confidence            34578999999999999974

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.0072  Score=33.77  Aligned_cols=29  Identities=17%  Similarity=0.224  Sum_probs=25.3

Q ss_pred             EEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          84 TCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        84 ~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      .|++.+ ++|+|. |+.||....++..|+..
T Consensus        12 ~C~~~~-g~~~C~-C~~Gy~L~~D~~tC~~~   40 (50)
T d1autl2          12 YCLEEV-GWRRCS-CAPGYKLGDDLLQCHPA   40 (50)
T ss_dssp             EEEECS-SSEEEE-CCTTEEECTTSSCEEEC
T ss_pred             EeecCC-CCeEEE-CCCCCEECCCCCccccC
Confidence            788988 999999 99999988888888653

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.003  Score=34.57  Aligned_cols=16  Identities=13%  Similarity=-0.228  Sum_probs=14.9

Q ss_pred             ccCCCCceeeCCCCCC
Q psy2060          47 HRTLDLLHDMGARYHW   62 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~   62 (193)
                      .|++++|+|.|++||.
T Consensus        19 ~Nt~Gsy~C~C~~Gy~   34 (45)
T d1szba2          19 HNHLGGFYCSCRAGYV   34 (45)
T ss_dssp             EEETTEEEEECCTTEE
T ss_pred             ccCCCCeEEECCCCCe
Confidence            6899999999999996

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.0081  Score=33.69  Aligned_cols=29  Identities=14%  Similarity=0.431  Sum_probs=25.1

Q ss_pred             EEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          84 TCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        84 ~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      .|++.+ ++|+|. |+.||....++..|+..
T Consensus        13 ~C~n~~-g~~~C~-C~~Gy~L~~D~~tC~~~   41 (51)
T d2p3ua1          13 FCHEEQ-NSVVCS-CARGYTLADNGKACIPT   41 (51)
T ss_dssp             EEEEET-TEEEEE-CCTTEEECTTSSCEEES
T ss_pred             EeecCC-CCeEeE-cCCCCEECCCCCccccC
Confidence            788988 999999 99999887778888653

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.34  E-value=0.0067  Score=34.58  Aligned_cols=35  Identities=9%  Similarity=-0.090  Sum_probs=26.1

Q ss_pred             CCCcee-eCCCCCCCCcccccCCCCCCC-CCCCCCcEEe
Q psy2060          50 LDLLHD-MGARYHWGDTCETDITKSDCK-GVCSPGATCS   86 (193)
Q Consensus        50 ~~~~~C-~C~~g~~G~~C~~~~~~~~C~-~pC~~gg~C~   86 (193)
                      .+..+| .|+++|+|++|+.-.+  .+. +|...++.|.
T Consensus        15 ~~~~vC~~C~~~~~G~~Ce~C~~--g~yg~P~~~~g~C~   51 (55)
T d1kloa1          15 TKEVVCTHCPTGTAGKRCELCDD--GYFGDPLGSNGPVR   51 (55)
T ss_dssp             SCCEEECSCCTTEESTTSCEECT--TEEEETTCTTSSCE
T ss_pred             CCCEEcCCCCCCCccCcccccCC--ccccCcccCCCcCc
Confidence            456788 5999999999997644  555 7777777665

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.017  Score=32.18  Aligned_cols=21  Identities=10%  Similarity=-0.208  Sum_probs=17.7

Q ss_pred             ccCCCCceeeCCCCCC----CCccc
Q psy2060          47 HRTLDLLHDMGARYHW----GDTCE   67 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~----G~~C~   67 (193)
                      .+++++|+|.|++||.    |..|+
T Consensus        14 ~~~~g~~~C~C~~Gy~L~~D~~tC~   38 (50)
T d1autl2          14 LEEVGWRRCSCAPGYKLGDDLLQCH   38 (50)
T ss_dssp             EECSSSEEEECCTTEEECTTSSCEE
T ss_pred             ecCCCCeEEECCCCCEECCCCCccc
Confidence            6788999999999997    66665

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.11  E-value=0.013  Score=32.84  Aligned_cols=29  Identities=14%  Similarity=0.297  Sum_probs=23.6

Q ss_pred             EEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          84 TCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        84 ~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      .|++.+ ++|+|. |+.||....++..|...
T Consensus        11 ~C~~~~-~~~~C~-C~~Gy~L~~D~~tC~~~   39 (51)
T d1kigl_          11 FCREER-SEVRCS-CAHGYVLGDDSKSCVST   39 (51)
T ss_dssp             CCCEET-TEECCC-CCTTEEECTTSSCEEEC
T ss_pred             EeEcCC-CcEEeE-cCCCCEECCCCCccccC
Confidence            467777 999999 99999887778888653

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.66  E-value=0.017  Score=32.25  Aligned_cols=22  Identities=23%  Similarity=0.184  Sum_probs=18.2

Q ss_pred             ccCCCCceeeCCCCCC----CCcccc
Q psy2060          47 HRTLDLLHDMGARYHW----GDTCET   68 (193)
Q Consensus        47 ~~~~~~~~C~C~~g~~----G~~C~~   68 (193)
                      .+++++|+|.|++||.    +..|+.
T Consensus        15 ~n~~g~~~C~C~~Gy~L~~D~~tC~~   40 (51)
T d2p3ua1          15 HEEQNSVVCSCARGYTLADNGKACIP   40 (51)
T ss_dssp             EEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             ecCCCCeEeEcCCCCEECCCCCcccc
Confidence            6788999999999997    666653

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.61  E-value=0.039  Score=31.22  Aligned_cols=39  Identities=21%  Similarity=0.662  Sum_probs=27.2

Q ss_pred             CCCCCcEEeeCC-CCceecccCCCCCCccccccccceecccCCC
Q psy2060          78 VCSPGATCSLNP-SGGYICDDCSLAGSYEHYDRLCRLRARSFPK  120 (193)
Q Consensus        78 pC~~gg~C~~~~-~~~~~C~~C~~g~~~~~~g~~C~~~~~sF~g  120 (193)
                      +|.++++|.... .+...|..|+++++    |++|+.-...|.+
T Consensus         2 pC~~~~~c~~~~~~~~~vC~~C~~~~~----G~~Ce~C~~g~yg   41 (55)
T d1kloa1           2 PCPGGSSCAIVPKTKEVVCTHCPTGTA----GKRCELCDDGYFG   41 (55)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEE----STTSCEECTTEEE
T ss_pred             cCcCCCccceeCCCCCEEcCCCCCCCc----cCcccccCCcccc
Confidence            567777776443 35667733999998    9999987665544

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=0.055  Score=30.83  Aligned_cols=30  Identities=13%  Similarity=0.417  Sum_probs=24.6

Q ss_pred             EEeeCCCCceecccCCCCCCcccccccccee
Q psy2060          84 TCSLNPSGGYICDDCSLAGSYEHYDRLCRLR  114 (193)
Q Consensus        84 ~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~~  114 (193)
                      .|++.+.++|.|. |+.||....++..|+..
T Consensus        13 ~C~~~~~~~~~C~-C~~Gy~L~~D~~tC~~~   42 (57)
T d1rfnb_          13 FCKNSADNKVVCS-CTEGYRLAENQKSCEPA   42 (57)
T ss_dssp             EEEECTTSCEEEE-CCTTEEECTTSSSEEEC
T ss_pred             EeeeCCCCCeEeE-CCCCCEECCCCCccccC
Confidence            7888764689999 99999887778888753

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=0.072  Score=29.44  Aligned_cols=31  Identities=26%  Similarity=0.488  Sum_probs=21.8

Q ss_pred             CCCCCcEEeeCC-----CCceecccCCCCCCcccccccc
Q psy2060          78 VCSPGATCSLNP-----SGGYICDDCSLAGSYEHYDRLC  111 (193)
Q Consensus        78 pC~~gg~C~~~~-----~~~~~C~~C~~g~~~~~~g~~C  111 (193)
                      -|.+  .|+..+     .++|+|. ||.||....+++.|
T Consensus        13 GC~h--~Cl~~p~~~n~~~~y~C~-C~~G~~L~~D~~tC   48 (50)
T d1ijqa2          13 GCQY--LCLPAPQINPHSPKFTCA-CPDGMLLARDMRSC   48 (50)
T ss_dssp             GCSS--EEEECCCCSTTCCSEEEE-CCTTCEECTTSSCE
T ss_pred             CCcC--ccCCCcCcccCCCCEEEe-CCCCCEECCCCCcc
Confidence            4554  676432     2789999 99999876666665

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.24  E-value=0.062  Score=30.09  Aligned_cols=29  Identities=21%  Similarity=0.240  Sum_probs=23.3

Q ss_pred             EEeeCCCCceecccCCCCCCccccccccce
Q psy2060          84 TCSLNPSGGYICDDCSLAGSYEHYDRLCRL  113 (193)
Q Consensus        84 ~C~~~~~~~~~C~~C~~g~~~~~~g~~C~~  113 (193)
                      .|++.+.+.|+|. |+.||....++..|..
T Consensus        12 ~C~~~~~~~~~C~-C~~Gy~L~~D~~tC~~   40 (53)
T d2bz6l1          12 YCSDHTGTKRSCR-CHEGYSLLADGVSCTP   40 (53)
T ss_dssp             EEEEETTTEEEEE-CCTTEEECTTSSCEEE
T ss_pred             EeeeCCCCCEEeE-CCCCCEECCCCCcccC
Confidence            6777774568999 9999988777888864

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.51  E-value=0.09  Score=29.00  Aligned_cols=15  Identities=0%  Similarity=-0.359  Sum_probs=13.0

Q ss_pred             cCCCCceeeCCCCCC
Q psy2060          48 RTLDLLHDMGARYHW   62 (193)
Q Consensus        48 ~~~~~~~C~C~~g~~   62 (193)
                      ++.++|+|.|+.||.
T Consensus        26 n~~~~y~C~C~~G~~   40 (50)
T d1ijqa2          26 PHSPKFTCACPDGML   40 (50)
T ss_dssp             TTCCSEEEECCTTCE
T ss_pred             cCCCCEEEeCCCCCE
Confidence            556799999999996

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.84  E-value=0.08  Score=27.95  Aligned_cols=14  Identities=14%  Similarity=0.110  Sum_probs=13.2

Q ss_pred             eeeCCCCCCCCccc
Q psy2060          54 HDMGARYHWGDTCE   67 (193)
Q Consensus        54 ~C~C~~g~~G~~C~   67 (193)
                      .|.|.+||+|+.|+
T Consensus        27 ~C~C~~Gw~G~~Ce   40 (41)
T d1l3ya_          27 KCRCHPGFEGSACQ   40 (41)
T ss_dssp             EEEECTTCCTTTTC
T ss_pred             EEEcCCCCcccCcc
Confidence            79999999999997

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.17  E-value=0.19  Score=26.13  Aligned_cols=28  Identities=21%  Similarity=0.542  Sum_probs=22.3

Q ss_pred             CCCC-CCCCCCcEEeeCCCCceecccCCCCCC
Q psy2060          73 SDCK-GVCSPGATCSLNPSGGYICDDCSLAGS  103 (193)
Q Consensus        73 ~~C~-~pC~~gg~C~~~~~~~~~C~~C~~g~~  103 (193)
                      ++|- .+|..  .|.+...++|+|. |..||+
T Consensus         5 DPCf~~~CE~--qCqP~~~~~Y~Ci-CaeGFa   33 (43)
T d1dx5i1           5 DPCFRANCEY--QCQPLDQTSYLCV-CAEGFA   33 (43)
T ss_dssp             CGGGGCCCSS--EEEECSSSCEEEE-CCTTEE
T ss_pred             ccccCCCcce--eeeeCCCCcceEE-eccccc
Confidence            3777 77876  7877655899999 999886

>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.02  E-value=0.17  Score=24.49  Aligned_cols=14  Identities=14%  Similarity=0.114  Sum_probs=11.4

Q ss_pred             eeeCCCCCCCCccc
Q psy2060          54 HDMGARYHWGDTCE   67 (193)
Q Consensus        54 ~C~C~~g~~G~~C~   67 (193)
                      .|.|.+||+|..|.
T Consensus        15 ~C~C~~gw~G~~CN   28 (31)
T d1jv2b4          15 DCLCDSDWTGYYCN   28 (31)
T ss_dssp             TTCCCTTEESSSSC
T ss_pred             ceEccCCccccccc
Confidence            57888899888875