Psyllid ID: psy2071

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MSKRRLDVIDPYITKKNREERLATVNASVSTSIASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGAGPWLPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQRFGLF
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccEEEEEcccccccccHHHHHHHHccccccccEEEEccccHHHHHHHHHHHHHHHcccccccccEEEEccccccccccEEEccHHHHHHHHccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHcccccEEEEcccccccEEEEcccccccccccccccccccccHHHHHHHHHHHcccccccEEEEEHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHcccccHHHccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHccccccccEEEcccHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccEEEEcccHHHHHHHHccccHHHcEEEEEccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHccccEEEcccccccEEEEEccccHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mskrrldvidpyitkknREERLATVNASVSTSIAsnlqvnpftgypytpryhelhrkritLPVFEYRTEFMTLLAQNQCIVLVgetgsgkttqipqwCVEYSKsvgakavactqpRRVAAMSVAQRVSEEMDcqlgqevgysirfedcsspkTVLKYMTDGmllregmsdpmleNYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDagkfqqyfdnaplmnvpgrthpveifytpepplgagpwlpqcftrpneakkAADDAKMRFahidgdhlTLLNVYHAFKQRFGLF
Flexible Loop (DISEMBL)
mskrrldvidpyitkknreerlATVNASVstsiasnlqvnpfTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYsirfedcsspKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGAGPWLPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQRFGLF
Low Complexity Region (SEG)
MSKRRLDVIDPYITKKNREERLATVNASVSTSIASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGAGPWLPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQRFGLF
Disordered region (IsUnstruct)
**********PYI*********ATVNASVSTSIASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGAGPWLPQCFTR**********AKMRFAHIDGDHLTLLNVYHAFKQRF***
Disordered Region (DISOPRED)
********************************************************KRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGAGPWLPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQRF***
Disordered Region (DISEMBL)
MSKRRLDVIDPYITKKNREERLATVNASVSTSIASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGAGPWLPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQRFGLF
Disordered Region (DISPRO)
****************************************PFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGAGPWLPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQRFGLF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKRRLDVIDPYITKKNREERLATVNASVSTSIASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGAGPWLPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQRFGLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q5RAZ4	795	Putative pre-mRNA-splicin	yes	N/A	0.698	0.265	0.741	2e-94
O35286	795	Putative pre-mRNA-splicin	no	N/A	0.698	0.265	0.741	2e-94
O43143	795	Putative pre-mRNA-splicin	yes	N/A	0.698	0.265	0.741	2e-94
Q20875	739	Putative pre-mRNA-splicin	yes	N/A	0.698	0.285	0.669	2e-84
O22899	729	Probable pre-mRNA-splicin	no	N/A	0.798	0.330	0.58	1e-76
P53131	767	Pre-mRNA-splicing factor	yes	N/A	0.698	0.275	0.650	3e-76
Q54NJ4	727	Putative pre-mRNA-splicin	yes	N/A	0.708	0.294	0.611	4e-75
O42945	735	Probable pre-mRNA-splicin	yes	N/A	0.774	0.318	0.567	8e-73
Q14562	1220	ATP-dependent RNA helicas	no	N/A	0.635	0.157	0.590	6e-65
A2A4P0	1244	ATP-dependent RNA helicas	no	N/A	0.635	0.154	0.590	6e-65

>sp|Q5RAZ4|DHX15_PONAB Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Pongo abelii GN=DHX15 PE=2 SV=2

 Score =  345 bits (886), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 158/213 (74%), Positives = 187/213 (87%), Gaps = 2/213 (0%)

Query: 39  VNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC 98
           +NPFT  P+TPRY+++ +KR+ LPV+EY+  F  +L ++Q  VLVGETGSGKTTQIPQWC
Sbjct: 115 INPFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWC 174

Query: 99  VEYSKSVGA--KAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
           VEY +S+    + VACTQPRRVAAMSVAQRV++EMD  LGQEVGYSIRFEDCSS KT+LK
Sbjct: 175 VEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILK 234

Query: 157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216
           YMTDGMLLRE M+DP+LE Y VI+LDEAHERTLATDILMGVLKEV++QR+DLK+++MSAT
Sbjct: 235 YMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSAT 294

Query: 217 LDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
           LDAGKFQ YFDN PL+ +PGRTHPVEIFYTPEP
Sbjct: 295 LDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEP 327

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.
Pongo abelii (taxid: 9601)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3

>sp|O35286|DHX15_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Mus musculus GN=Dhx15 PE=2 SV=2

 Score =  345 bits (886), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 158/213 (74%), Positives = 187/213 (87%), Gaps = 2/213 (0%)

Query: 39  VNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC 98
           +NPFT  P+TPRY+++ +KR+ LPV+EY+  F  +L ++Q  VLVGETGSGKTTQIPQWC
Sbjct: 115 INPFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWC 174

Query: 99  VEYSKSVGA--KAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
           VEY +S+    + VACTQPRRVAAMSVAQRV++EMD  LGQEVGYSIRFEDCSS KT+LK
Sbjct: 175 VEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILK 234

Query: 157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216
           YMTDGMLLRE M+DP+LE Y VI+LDEAHERTLATDILMGVLKEV++QR+DLK+++MSAT
Sbjct: 235 YMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSAT 294

Query: 217 LDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
           LDAGKFQ YFDN PL+ +PGRTHPVEIFYTPEP
Sbjct: 295 LDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEP 327

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|O43143|DHX15_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2

 Score =  345 bits (885), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 158/213 (74%), Positives = 187/213 (87%), Gaps = 2/213 (0%)

Query: 39  VNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC 98
           +NPFT  P+TPRY+++ +KR+ LPV+EY+  F  +L ++Q  VLVGETGSGKTTQIPQWC
Sbjct: 115 INPFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWC 174

Query: 99  VEYSKSVGA--KAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
           VEY +S+    + VACTQPRRVAAMSVAQRV++EMD  LGQEVGYSIRFEDCSS KT+LK
Sbjct: 175 VEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILK 234

Query: 157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216
           YMTDGMLLRE M+DP+LE Y VI+LDEAHERTLATDILMGVLKEV++QR+DLK+++MSAT
Sbjct: 235 YMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSAT 294

Query: 217 LDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
           LDAGKFQ YFDN PL+ +PGRTHPVEIFYTPEP
Sbjct: 295 LDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEP 327

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q20875|DHX15_CAEEL Putative pre-mRNA-splicing factor ATP-dependent RNA helicase F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1

 Score =  312 bits (800), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 146/218 (66%), Positives = 178/218 (81%), Gaps = 7/218 (3%)

Query: 37  LQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQ 96
           +Q+NP+   P++ RY  +  KR  LPV+EY+ +FM LL  NQCI LVGETGSGKTTQIPQ
Sbjct: 52  IQINPYNNQPFSNRYWAIWEKRSQLPVWEYKEKFMELLRNNQCITLVGETGSGKTTQIPQ 111

Query: 97  WCVEYSKSVG-------AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCS 149
           W VE+ K          A+ VACTQPRRVAAMSVA RV+EEMD  LGQEVGYSIRFEDC 
Sbjct: 112 WAVEFMKQQQQGQPPGQARLVACTQPRRVAAMSVATRVAEEMDVVLGQEVGYSIRFEDCI 171

Query: 150 SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLK 209
           S +TVLKY TDGMLLRE M+ P+L+ Y+V++LDEAHERTLATDILMG++KE+++ RAD+K
Sbjct: 172 SERTVLKYCTDGMLLREAMNSPLLDKYKVLILDEAHERTLATDILMGLIKEIVRNRADIK 231

Query: 210 LVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTP 247
           +VIMSATLDAGKFQ+YF++ PL++VPGRT PVEIF+TP
Sbjct: 232 VVIMSATLDAGKFQRYFEDCPLLSVPGRTFPVEIFFTP 269

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|O22899|DHX15_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1

 Score =  286 bits (733), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 145/250 (58%), Positives = 186/250 (74%), Gaps = 9/250 (3%)

Query: 6   LDVI-DPYITKKNREERLATVNASVSTSIASNLQVNPFTGYPYTPRYHELHRKRITLPVF 64
            DV+ DP ++ KN +        + +    SNL +N + G  Y+ RY E+  KR  LPV+
Sbjct: 12  FDVMEDPSLSSKNTKSNGLG--LAAAAGGGSNL-INKWNGKAYSQRYFEILEKRRDLPVW 68

Query: 65  EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY----SKSVGAK-AVACTQPRRVA 119
             + +F+  L  NQ ++LVGETGSGKTTQIPQ+ ++     +   G K  V CTQPRRVA
Sbjct: 69  LQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKGRKWLVGCTQPRRVA 128

Query: 120 AMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVI 179
           AMSV++RV++EMD  +G+EVGYSIRFEDC+S +T+LKY+TDGMLLRE M+DP+LE Y+VI
Sbjct: 129 AMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREAMADPLLERYKVI 188

Query: 180 LLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTH 239
           +LDEAHERTLATD+L G+LKEV++ R DLKLV+MSATL+A KFQ+YF  APLM VPGR H
Sbjct: 189 ILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLH 248

Query: 240 PVEIFYTPEP 249
           PVEIFYT EP
Sbjct: 249 PVEIFYTQEP 258

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|P53131|PRP43_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP43 PE=1 SV=1

 Score =  285 bits (729), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 138/212 (65%), Positives = 171/212 (80%), Gaps = 1/212 (0%)

Query: 38  QVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQW 97
           ++NPFTG  +TP+Y ++ + R  LPV   R EF+ L   NQ +V VGETGSGKTTQIPQ+
Sbjct: 70  KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQF 129

Query: 98  CV-EYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
            + +    +    VACTQPRRVAAMSVAQRV+EEMD +LG+EVGYSIRFE+ +S KT+LK
Sbjct: 130 VLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILK 189

Query: 157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216
           YMTDGMLLRE M D  L  Y  I+LDEAHERTLATDILMG+LK+V+K+R DLK++IMSAT
Sbjct: 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSAT 249

Query: 217 LDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPE 248
           LDA KFQ+YF++APL+ VPGRT+PVE++YTPE
Sbjct: 250 LDAEKFQRYFNDAPLLAVPGRTYPVELYYTPE 281

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q54NJ4|DHX15_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1

 Score =  281 bits (719), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 132/216 (61%), Positives = 173/216 (80%), Gaps = 2/216 (0%)

Query: 35  SNLQVNPFT--GYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTT 92
           SNL ++ +      ++ RY+E+  KR  LPV++ + +F+ ++ +NQ ++LVGETGSGKTT
Sbjct: 49  SNLTIDQWIPKKETFSKRYYEILEKRKELPVWKQKEDFIKVIKENQVVILVGETGSGKTT 108

Query: 93  QIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPK 152
           QIPQ+ V+       K V  TQPRRVAA+SVA+RVSEEMD +LG+EVGYSIRFE+ SS +
Sbjct: 109 QIPQFVVDAGLIRPGKMVGVTQPRRVAAISVAKRVSEEMDFELGEEVGYSIRFEELSSAR 168

Query: 153 TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVI 212
           T +KY+TDGMLLRE MSDP L  Y VI+LDEAHERTL+TDIL G++K+++K+R DLKL++
Sbjct: 169 TFMKYLTDGMLLRESMSDPTLNKYDVIILDEAHERTLSTDILFGLIKDILKRRKDLKLIV 228

Query: 213 MSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPE 248
           MSATL+AGKFQ+YF+NAPL+ VPGR HPVEIFYT E
Sbjct: 229 MSATLEAGKFQKYFENAPLIKVPGRLHPVEIFYTEE 264

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|O42945|DHX15_SCHPO Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp43 PE=3 SV=1

 Score =  273 bits (699), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 135/238 (56%), Positives = 172/238 (72%), Gaps = 4/238 (1%)

Query: 13  ITKKNREERLATVNASVSTSIASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMT 72
           ++ K    R  TV  +       N   N F   P++  Y ++   R  LPV++ R EF+ 
Sbjct: 30  VSSKGLTRRATTVAQAAKAEEGPN---NFFNDKPFSQNYFKILETRRELPVYQQREEFLK 86

Query: 73  LLAQNQCIVLVGETGSGKTTQIPQWCV-EYSKSVGAKAVACTQPRRVAAMSVAQRVSEEM 131
           +  +NQ IV VGETGSGKTTQIPQ+ + +    +    +ACTQPRRVAAMSVA+RV++EM
Sbjct: 87  IYHENQIIVFVGETGSGKTTQIPQFVLYDELPHLTNTQIACTQPRRVAAMSVAKRVADEM 146

Query: 132 DCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT 191
           D  LG+EVGY+IRFEDCS P T+LKYMTDGMLLRE M+D ML  Y  I+LDEAHERTLAT
Sbjct: 147 DVDLGEEVGYNIRFEDCSGPNTLLKYMTDGMLLREAMTDHMLSRYSCIILDEAHERTLAT 206

Query: 192 DILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
           DILMG++K +  +R DLK+++MSATLDA KFQ+YF +APL+ VPGRT+PVEI+YT EP
Sbjct: 207 DILMGLMKRLATRRPDLKIIVMSATLDAKKFQKYFFDAPLLAVPGRTYPVEIYYTQEP 264

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q14562|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1

 Score =  247 bits (631), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 151/193 (78%), Gaps = 1/193 (0%)

Query: 57  KRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR 116
           +R +LP+++ + + +  +  NQ ++++GETGSGKTTQI Q+  E   +   K + CTQPR
Sbjct: 561 QRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGK-IGCTQPR 619

Query: 117 RVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENY 176
           RVAAMSVA+RVSEE  C LGQEVGY+IRFEDC+SP+TV+KYMTDGMLLRE + DP L  Y
Sbjct: 620 RVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQY 679

Query: 177 QVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG 236
            +I+LDEAHERT+ TD+L G+LK+ +++R D+KL++ SATLDA KF QYF  AP+  +PG
Sbjct: 680 AIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPG 739

Query: 237 RTHPVEIFYTPEP 249
           RT+PVEI YT EP
Sbjct: 740 RTYPVEILYTKEP 752

Facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1

 Score =  247 bits (631), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 151/193 (78%), Gaps = 1/193 (0%)

Query: 57  KRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR 116
           +R +LP+++ + + +  +  NQ ++++GETGSGKTTQI Q+  E   +   K + CTQPR
Sbjct: 585 QRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGK-IGCTQPR 643

Query: 117 RVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENY 176
           RVAAMSVA+RVSEE  C LGQEVGY+IRFEDC+SP+TV+KYMTDGMLLRE + DP L  Y
Sbjct: 644 RVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQY 703

Query: 177 QVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG 236
            +I+LDEAHERT+ TD+L G+LK+ +++R D+KL++ SATLDA KF QYF  AP+  +PG
Sbjct: 704 AIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPG 763

Query: 237 RTHPVEIFYTPEP 249
           RT+PVEI YT EP
Sbjct: 764 RTYPVEILYTKEP 776

Facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
332019512	719	Putative pre-mRNA-splicing factor ATP-de	0.821	0.344	0.816	1e-118
91077430	716	PREDICTED: similar to ATP-dependent RNA	0.817	0.344	0.815	1e-117
193647974	716	PREDICTED: putative pre-mRNA-splicing fa	0.817	0.344	0.815	1e-114
242010317	723	ATP-dependent RNA helicase, putative [Pe	0.821	0.343	0.811	1e-114
345482402	1041	PREDICTED: putative pre-mRNA-splicing fa	0.711	0.206	0.902	1e-113
383866382	1039	PREDICTED: putative pre-mRNA-splicing fa	0.741	0.215	0.871	1e-112
322796692	1038	hypothetical protein SINV_01104 [Solenop	0.728	0.211	0.872	1e-112
157106032	726	ATP-dependent RNA helicase [Aedes aegypt	0.824	0.342	0.758	1e-111
307170456	1037	Putative pre-mRNA-splicing factor ATP-de	0.738	0.215	0.860	1e-111
340725762	1039	PREDICTED: putative pre-mRNA-splicing fa	0.751	0.218	0.842	1e-111

>gi|332019512|gb|EGI59991.1| Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 [Acromyrmex echinatior]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/251 (81%), Positives = 229/251 (91%), Gaps = 3/251 (1%)

Query: 1   MSKRRLDVIDPYITKKNREERLATVNASV--STSIASNLQVNPFTGYPYTPRYHELHRKR 58
           MSKRR++V+DPY+ +K  +  +A  NA+   +T+  S +Q NP+T  PYTPRY+EL++KR
Sbjct: 1   MSKRRIEVVDPYVKRKATDNTVAN-NATTPGTTAAKSQVQFNPYTMLPYTPRYYELYKKR 59

Query: 59  ITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV 118
           ITLPVFEYRT+FM LL+Q+QCIVLVGETGSGKTTQIPQWCVEYS+S+G+K VACTQPRRV
Sbjct: 60  ITLPVFEYRTDFMRLLSQHQCIVLVGETGSGKTTQIPQWCVEYSRSIGSKGVACTQPRRV 119

Query: 119 AAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQV 178
           AAMSVAQRVSEEMD  LGQEVGYSIRFEDCSSP+TVLKYMTDGMLLREGMSDPML+ YQV
Sbjct: 120 AAMSVAQRVSEEMDVALGQEVGYSIRFEDCSSPRTVLKYMTDGMLLREGMSDPMLDAYQV 179

Query: 179 ILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238
           ILLDEAHERTLATD+LMGVLKEVIKQR DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT
Sbjct: 180 ILLDEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 239

Query: 239 HPVEIFYTPEP 249
           HPVEIFYTPEP
Sbjct: 240 HPVEIFYTPEP 250

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077430|ref|XP_966364.1| PREDICTED: similar to ATP-dependent RNA helicase [Tribolium castaneum] gi|270001627|gb|EEZ98074.1| hypothetical protein TcasGA2_TC000481 [Tribolium castaneum]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/249 (81%), Positives = 222/249 (89%), Gaps = 2/249 (0%)

Query: 1   MSKRRLDVIDPYITKKNREERLATVNASVSTSIASNLQVNPFTGYPYTPRYHELHRKRIT 60
           MSKRR++V+DP+I KK  E  ++T  A  +T   +N  +NP TG PYT +YHEL+RKRIT
Sbjct: 1   MSKRRIEVLDPFIKKKREERGIST--AVTNTPQVTNASINPHTGLPYTNKYHELYRKRIT 58

Query: 61  LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA 120
           LPVFEYR +FM LLA+NQCIVLVGETGSGKTTQIPQWCVE+++SVG K V CTQPRRVAA
Sbjct: 59  LPVFEYRNDFMRLLAENQCIVLVGETGSGKTTQIPQWCVEFARSVGKKGVCCTQPRRVAA 118

Query: 121 MSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVIL 180
           MSVAQRVSEEMD  LGQEVGYSIRFEDCSS KT+LKYMTDGMLLREGMSDPML+ YQ IL
Sbjct: 119 MSVAQRVSEEMDVALGQEVGYSIRFEDCSSAKTILKYMTDGMLLREGMSDPMLDAYQCIL 178

Query: 181 LDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHP 240
           LDEAHERTLATDILMGVLKEVIKQR+DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHP
Sbjct: 179 LDEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHP 238

Query: 241 VEIFYTPEP 249
           VEIFYTPEP
Sbjct: 239 VEIFYTPEP 247

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193647974|ref|XP_001945171.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like [Acyrthosiphon pisum]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/249 (81%), Positives = 215/249 (86%), Gaps = 2/249 (0%)

Query: 1   MSKRRLDVIDPYITKKNREERLATVNASVSTSIASNLQVNPFTGYPYTPRYHELHRKRIT 60
           MSKRRLD+IDPYITK  + E    V    S+S  + LQ NP+T  P+TP+Y ELH+KRI 
Sbjct: 1   MSKRRLDIIDPYITKNKKAEGGGQVYMKPSSS--TQLQTNPYTNLPFTPKYFELHKKRIQ 58

Query: 61  LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA 120
           LPVFEY+ EFM+LL  NQCIVLVGETGSGKTTQIPQWCVEYS   G K VACTQPRRVAA
Sbjct: 59  LPVFEYKDEFMSLLKNNQCIVLVGETGSGKTTQIPQWCVEYSSVCGRKGVACTQPRRVAA 118

Query: 121 MSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVIL 180
           MSVAQRVSEEMD  LG EVGYSIRFEDCSS +T+LKYMTDGMLLREGMSDPMLE YQVIL
Sbjct: 119 MSVAQRVSEEMDVCLGSEVGYSIRFEDCSSSRTLLKYMTDGMLLREGMSDPMLETYQVIL 178

Query: 181 LDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHP 240
           LDEAHERTLATDILMGVLKEVIKQR DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT P
Sbjct: 179 LDEAHERTLATDILMGVLKEVIKQRKDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTFP 238

Query: 241 VEIFYTPEP 249
           VEIFYTPEP
Sbjct: 239 VEIFYTPEP 247

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010317|ref|XP_002425915.1| ATP-dependent RNA helicase, putative [Pediculus humanus corporis] gi|212509891|gb|EEB13177.1| ATP-dependent RNA helicase, putative [Pediculus humanus corporis]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/255 (81%), Positives = 217/255 (85%), Gaps = 7/255 (2%)

Query: 1   MSKRRLDVIDPYITKKNREE------RLATVNASVSTSIASNLQVNPFTGYPYTPRYHEL 54
           MSKRR++V DPYI +K  EE               S    S L +NP+T  P+TPRYHEL
Sbjct: 1   MSKRRIEV-DPYIKRKRTEEGDNSSSSSGPPAPKYSNQSQSGLSINPYTKLPHTPRYHEL 59

Query: 55  HRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ 114
           +RKRITLPVFEYR EFM LLA NQCIVLVGETGSGKTTQIPQWCVEYS+  G+K VACTQ
Sbjct: 60  YRKRITLPVFEYREEFMKLLANNQCIVLVGETGSGKTTQIPQWCVEYSRCCGSKGVACTQ 119

Query: 115 PRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLE 174
           PRRVAAMSVAQRVSEEMD  LG EVGYSIRFEDCSS KT+LKYMTDGMLLREGMSDPMLE
Sbjct: 120 PRRVAAMSVAQRVSEEMDVCLGHEVGYSIRFEDCSSSKTMLKYMTDGMLLREGMSDPMLE 179

Query: 175 NYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNV 234
            YQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNV
Sbjct: 180 AYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNV 239

Query: 235 PGRTHPVEIFYTPEP 249
           PGRTHPVEIFYTPEP
Sbjct: 240 PGRTHPVEIFYTPEP 254

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482402|ref|XP_003424589.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like [Nasonia vitripennis]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/215 (90%), Positives = 204/215 (94%)

Query: 35  SNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQI 94
           S +Q+NP+TG PYTPRYHE +RKRITLPVFEYR +FM LLAQ+QCIVLVGETGSGKTTQI
Sbjct: 358 SQVQLNPYTGLPYTPRYHEFYRKRITLPVFEYRADFMRLLAQHQCIVLVGETGSGKTTQI 417

Query: 95  PQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTV 154
           PQWCVEYSKS G KAVACTQPRRVAAMSVAQRVSEEMD  LGQEVGYSIRFEDCSS KT+
Sbjct: 418 PQWCVEYSKSAGTKAVACTQPRRVAAMSVAQRVSEEMDVALGQEVGYSIRFEDCSSSKTI 477

Query: 155 LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMS 214
           LKYMTDGMLLREGMSDPMLE YQVILLDEAHERTLATD+LMGVLKEVIKQR+DLKL+IMS
Sbjct: 478 LKYMTDGMLLREGMSDPMLEAYQVILLDEAHERTLATDLLMGVLKEVIKQRSDLKLIIMS 537

Query: 215 ATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
           ATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP
Sbjct: 538 ATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 572

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866382|ref|XP_003708649.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like [Megachile rotundata]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/225 (87%), Positives = 207/225 (92%), Gaps = 1/225 (0%)

Query: 26  NASV-STSIASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVG 84
           N SV +T+  S +QVNP+ G PYTPRYHE ++KRITLPVFEYR +FM LLAQ+QCIVLVG
Sbjct: 346 NISVPTTAPKSQVQVNPYNGLPYTPRYHEFYQKRITLPVFEYRADFMRLLAQHQCIVLVG 405

Query: 85  ETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR 144
           ETGSGKTTQIPQWCVEYS  +G K VACTQPRRVAAMSVAQRVSEEMD  LGQEVGYSIR
Sbjct: 406 ETGSGKTTQIPQWCVEYSSCIGTKGVACTQPRRVAAMSVAQRVSEEMDVALGQEVGYSIR 465

Query: 145 FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQ 204
           FEDCSSPKTVLKYMTDGMLLREGMSDPML+ YQVILLDEAHERTLATD+LMGVLKEVIKQ
Sbjct: 466 FEDCSSPKTVLKYMTDGMLLREGMSDPMLDAYQVILLDEAHERTLATDLLMGVLKEVIKQ 525

Query: 205 RADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
           R DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP
Sbjct: 526 RPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 570

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796692|gb|EFZ19125.1| hypothetical protein SINV_01104 [Solenopsis invicta]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/220 (87%), Positives = 207/220 (94%)

Query: 30  STSIASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSG 89
           +T+  S +Q NP+T  PYTPRY+EL++KRITLPVFEYRT+FM LL+Q+QCIVLVGETGSG
Sbjct: 350 TTAAKSQVQFNPYTMLPYTPRYYELYKKRITLPVFEYRTDFMRLLSQHQCIVLVGETGSG 409

Query: 90  KTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCS 149
           KTTQIPQWCVEYS+S+G K VACTQPRRVAAMSVAQRVSEEMD  LGQEVGYSIRFEDCS
Sbjct: 410 KTTQIPQWCVEYSRSIGNKGVACTQPRRVAAMSVAQRVSEEMDVALGQEVGYSIRFEDCS 469

Query: 150 SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLK 209
           SP+TVLKYMTDGMLLREGMSDPML+ YQVILLDEAHERTLATD+LMGVLKEVIKQR DLK
Sbjct: 470 SPRTVLKYMTDGMLLREGMSDPMLDAYQVILLDEAHERTLATDLLMGVLKEVIKQRPDLK 529

Query: 210 LVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
           LVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP
Sbjct: 530 LVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 569

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157106032|ref|XP_001649136.1| ATP-dependent RNA helicase [Aedes aegypti] gi|108879962|gb|EAT44187.1| AAEL004419-PA [Aedes aegypti]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/257 (75%), Positives = 219/257 (85%), Gaps = 8/257 (3%)

Query: 1   MSKRRLDVIDPYITKKNREERLATVNASVST--------SIASNLQVNPFTGYPYTPRYH 52
           MSKRR++V+DP+I K+  E+ +    AS S         + ASN + NP  G PYT  Y 
Sbjct: 1   MSKRRIEVMDPFIKKRREEKGMLDSGASTSGNNSVALTGTTASNGKTNPLNGIPYTQNYF 60

Query: 53  ELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC 112
            L++KRITLPVFEYR +FM LL+++QCIVLVGETGSGKTTQIPQWCV+++++ G K VAC
Sbjct: 61  NLYKKRITLPVFEYRADFMRLLSEHQCIVLVGETGSGKTTQIPQWCVDFARASGNKGVAC 120

Query: 113 TQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPM 172
           TQPRRVAAMSVAQRVSEEMD  LGQEVGYSIRFEDCSS +T+LKYMTDGMLLREGMSDPM
Sbjct: 121 TQPRRVAAMSVAQRVSEEMDVLLGQEVGYSIRFEDCSSARTILKYMTDGMLLREGMSDPM 180

Query: 173 LENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLM 232
           LE YQVILLDEAHERTLATD+LMGVLKEVI+QR DLKLVIMSATLDAGKFQQYFDNAPLM
Sbjct: 181 LETYQVILLDEAHERTLATDLLMGVLKEVIRQRKDLKLVIMSATLDAGKFQQYFDNAPLM 240

Query: 233 NVPGRTHPVEIFYTPEP 249
           NVPGRTHPVEIFYTPEP
Sbjct: 241 NVPGRTHPVEIFYTPEP 257

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170456|gb|EFN62726.1| Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 [Camponotus floridanus]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/223 (86%), Positives = 208/223 (93%)

Query: 27  ASVSTSIASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGET 86
           A+ ST+  S +Q NP+T  PYTPRY+EL++KRITLPVFEYRT+F+ LL+Q+QCIVLVGET
Sbjct: 346 AAPSTATKSQVQFNPYTMLPYTPRYYELYKKRITLPVFEYRTDFVRLLSQHQCIVLVGET 405

Query: 87  GSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFE 146
           GSGKTTQIPQWCVEYS+S+G K VACT PRRVAAMSVAQRVSEEMD  LGQEVGYSIRFE
Sbjct: 406 GSGKTTQIPQWCVEYSRSIGNKGVACTSPRRVAAMSVAQRVSEEMDVALGQEVGYSIRFE 465

Query: 147 DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRA 206
           DCSSP+TVLKYMTDGMLLREGMSDPML+ YQVILLDEAHERTLATD+LMGVLKEVIKQR 
Sbjct: 466 DCSSPRTVLKYMTDGMLLREGMSDPMLDAYQVILLDEAHERTLATDLLMGVLKEVIKQRP 525

Query: 207 DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
           DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP
Sbjct: 526 DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 568

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725762|ref|XP_003401235.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like [Bombus terrestris]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/229 (84%), Positives = 211/229 (92%), Gaps = 2/229 (0%)

Query: 23  ATVNASV--STSIASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCI 80
           AT N++   ST+  + +Q+NP+T  P+TPRYHEL++KRITLPVFEYRT+FM LLAQ+QCI
Sbjct: 342 ATSNSTTIPSTAPKNQVQLNPYTSLPFTPRYHELYKKRITLPVFEYRTDFMRLLAQHQCI 401

Query: 81  VLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVG 140
           VLVGETGSGKTTQIPQWCVEYS+ + +K VACTQPRRVAAMSVAQRVSEEMD  LG EVG
Sbjct: 402 VLVGETGSGKTTQIPQWCVEYSRRIDSKGVACTQPRRVAAMSVAQRVSEEMDVPLGVEVG 461

Query: 141 YSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKE 200
           YSIRFEDCSSPKT+LKYMTDGMLLREGMSDPML+ YQVILLDEAHERTLATD+LMGVLKE
Sbjct: 462 YSIRFEDCSSPKTILKYMTDGMLLREGMSDPMLDAYQVILLDEAHERTLATDLLMGVLKE 521

Query: 201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
           VIKQR DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP
Sbjct: 522 VIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 570

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
FB|FBgn0033160	729	CG11107 [Drosophila melanogast	0.824	0.341	0.707	7.8e-114
UNIPROTKB|F1NHI3	762	DHX15 "Uncharacterized protein	0.774	0.307	0.686	5.7e-109
ZFIN|ZDB-GENE-030131-650	769	dhx15 "DEAH (Asp-Glu-Ala-His)	0.701	0.275	0.747	1e-107
UNIPROTKB|A5D7D9	795	DHX15 "Uncharacterized protein	0.698	0.265	0.751	1.3e-105
UNIPROTKB|E2R2U3	795	DHX15 "Uncharacterized protein	0.698	0.265	0.751	1.3e-105
UNIPROTKB|O43143	795	DHX15 "Putative pre-mRNA-splic	0.698	0.265	0.751	1.3e-105
UNIPROTKB|F1S5A8	795	DHX15 "Uncharacterized protein	0.698	0.265	0.751	1.3e-105
MGI|MGI:1099786	795	Dhx15 "DEAH (Asp-Glu-Ala-His)	0.698	0.265	0.751	1.3e-105
RGD|1308072	795	Dhx15 "DEAH (Asp-Glu-Ala-His)	0.698	0.265	0.751	1.3e-105
WB|WBGene00018967	739	F56D2.6 [Caenorhabditis elegan	0.698	0.285	0.674	4.8e-93

FB|FBgn0033160 CG11107 [Drosophila melanogaster (taxid:7227)]

 Score = 933 (333.5 bits), Expect = 7.8e-114, Sum P(2) = 7.8e-114
 Identities = 184/260 (70%), Positives = 217/260 (83%)

Query:     1 MSKRRLDVIDPYITKKNREERLATVNASVST-SIAS-------NLQ---VNPFTGYPYTP 49
             MSKRR++V + Y +K  ++   ++ +A+ +  ++A        N Q   +NP T  PY+ 
Sbjct:     1 MSKRRIEVGETYGSKAKKDPEASSSSAAAAAGTVAQILGGFVPNKQPPTMNPLTNTPYSQ 60

Query:    50 RYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKA 109
             RY  L++KRI LPVFEY+ +FM LL+ +QCIVLVGETGSGKTTQIPQWCV+++ S G K 
Sbjct:    61 RYQNLYKKRIALPVFEYQADFMRLLSLHQCIVLVGETGSGKTTQIPQWCVDFAVSKGRKG 120

Query:   110 VACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMS 169
             V+CTQPRRVAAMSVAQRVSEEMD +LG+EVGYSIRFEDCS+ KT+LKYMTDGMLLRE MS
Sbjct:   121 VSCTQPRRVAAMSVAQRVSEEMDVKLGEEVGYSIRFEDCSTAKTLLKYMTDGMLLREAMS 180

Query:   170 DPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNA 229
             DPML+ YQVILLDEAHERTLATDILMGVLKEVI+QR+DLKLV+MSATLDAGKFQQYFDNA
Sbjct:   181 DPMLDQYQVILLDEAHERTLATDILMGVLKEVIRQRSDLKLVVMSATLDAGKFQQYFDNA 240

Query:   230 PLMNVPGRTHPVEIFYTPEP 249
             PLM VPGRTHPVEIFYTPEP
Sbjct:   241 PLMKVPGRTHPVEIFYTPEP 260

GO:0008026 "ATP-dependent helicase activity" evidence=ISS

GO:0003724 "RNA helicase activity" evidence=ISS

GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1NHI3 DHX15 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 862 (308.5 bits), Expect = 5.7e-109, Sum P(3) = 5.7e-109
 Identities = 169/246 (68%), Positives = 200/246 (81%)

Query:    16 KNREERLATVNASVSTSIASNL----------QVNPFTGYPYTPRYHELHRKRITLPVFE 65
             + RE+      AS ST IA+ L           +NPFT  P+TPRY+++ +KR+ LPV+E
Sbjct:    49 REREKEKELRAASNSTLIAAGLPPMKPAMIPHSINPFTNLPHTPRYYDILKKRLQLPVWE 108

Query:    66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSV-GAK-AVACTQPRRVAAMSV 123
             Y+  F  +L ++Q  VLVGETGSGKTTQIPQWCV+Y +S+ G K  VACTQPRRVAAMSV
Sbjct:   109 YKERFTDILIRHQSFVLVGETGSGKTTQIPQWCVDYMRSLPGPKRGVACTQPRRVAAMSV 168

Query:   124 AQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183
             AQRV++EMD  LGQEVGYSIRFEDCSS KT+LKYMTDGMLLRE M+DP+LE Y VI+LDE
Sbjct:   169 AQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDE 228

Query:   184 AHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEI 243
             AHERTLATDILMGVLKEV++QRADLK+++MSATLDAGKFQ YFDN PL+ +PGRTHPVEI
Sbjct:   229 AHERTLATDILMGVLKEVVRQRADLKVIVMSATLDAGKFQIYFDNCPLLTIPGRTHPVEI 288

Query:   244 FYTPEP 249
             FYTPEP
Sbjct:   289 FYTPEP 294

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

ZFIN|ZDB-GENE-030131-650 dhx15 "DEAH (Asp-Glu-Ala-His) box polypeptide 15" [Danio rerio (taxid:7955)]

 Score = 855 (306.0 bits), Expect = 1.0e-107, Sum P(3) = 1.0e-107
 Identities = 160/214 (74%), Positives = 188/214 (87%)

Query:    38 QVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQW 97
             Q+NPFT  P+TPRY+E+ +KR+ LPV+EY+  F  +L ++Q  VLVGETGSGKTTQIPQW
Sbjct:    88 QINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILNRHQSFVLVGETGSGKTTQIPQW 147

Query:    98 CVEYSKSV-GAK-AVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVL 155
             CV+  +S+ G K  VACTQPRRVAAMSVAQRV++EMD  LGQEVGYSIRFEDCSS KT+L
Sbjct:   148 CVDMVRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTIL 207

Query:   156 KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSA 215
             KYMTDGMLLRE M+DP+LE Y VI+LDEAHERTLATDILMGVLKEV++QR+DLK+++MSA
Sbjct:   208 KYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSA 267

Query:   216 TLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
             TLDAGKFQ YFDN PL+ +PGRTHPVEIFYTPEP
Sbjct:   268 TLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEP 301

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|A5D7D9 DHX15 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 861 (308.1 bits), Expect = 1.3e-105, Sum P(2) = 1.3e-105
 Identities = 160/213 (75%), Positives = 188/213 (88%)

Query:    39 VNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC 98
             +NPFT  P+TPRY+++ +KR+ LPV+EY+  F  +L ++Q  VLVGETGSGKTTQIPQWC
Sbjct:   115 INPFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWC 174

Query:    99 VEYSKSV-GAK-AVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
             VEY +S+ G K  VACTQPRRVAAMSVAQRV++EMD  LGQEVGYSIRFEDCSS KT+LK
Sbjct:   175 VEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILK 234

Query:   157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216
             YMTDGMLLRE M+DP+LE Y VI+LDEAHERTLATDILMGVLKEV++QR+DLK+++MSAT
Sbjct:   235 YMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSAT 294

Query:   217 LDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
             LDAGKFQ YFDN PL+ +PGRTHPVEIFYTPEP
Sbjct:   295 LDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEP 327

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2R2U3 DHX15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 861 (308.1 bits), Expect = 1.3e-105, Sum P(2) = 1.3e-105
 Identities = 160/213 (75%), Positives = 188/213 (88%)

Query:    39 VNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC 98
             +NPFT  P+TPRY+++ +KR+ LPV+EY+  F  +L ++Q  VLVGETGSGKTTQIPQWC
Sbjct:   115 INPFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWC 174

Query:    99 VEYSKSV-GAK-AVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
             VEY +S+ G K  VACTQPRRVAAMSVAQRV++EMD  LGQEVGYSIRFEDCSS KT+LK
Sbjct:   175 VEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILK 234

Query:   157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216
             YMTDGMLLRE M+DP+LE Y VI+LDEAHERTLATDILMGVLKEV++QR+DLK+++MSAT
Sbjct:   235 YMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSAT 294

Query:   217 LDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
             LDAGKFQ YFDN PL+ +PGRTHPVEIFYTPEP
Sbjct:   295 LDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEP 327

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|O43143 DHX15 "Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15" [Homo sapiens (taxid:9606)]

 Score = 861 (308.1 bits), Expect = 1.3e-105, Sum P(2) = 1.3e-105
 Identities = 160/213 (75%), Positives = 188/213 (88%)

Query:    39 VNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC 98
             +NPFT  P+TPRY+++ +KR+ LPV+EY+  F  +L ++Q  VLVGETGSGKTTQIPQWC
Sbjct:   115 INPFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWC 174

Query:    99 VEYSKSV-GAK-AVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
             VEY +S+ G K  VACTQPRRVAAMSVAQRV++EMD  LGQEVGYSIRFEDCSS KT+LK
Sbjct:   175 VEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILK 234

Query:   157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216
             YMTDGMLLRE M+DP+LE Y VI+LDEAHERTLATDILMGVLKEV++QR+DLK+++MSAT
Sbjct:   235 YMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSAT 294

Query:   217 LDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
             LDAGKFQ YFDN PL+ +PGRTHPVEIFYTPEP
Sbjct:   295 LDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEP 327

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003724 "RNA helicase activity" evidence=TAS

GO:0008380 "RNA splicing" evidence=IC

GO:0005689 "U12-type spliceosomal complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F1S5A8 DHX15 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 861 (308.1 bits), Expect = 1.3e-105, Sum P(2) = 1.3e-105
 Identities = 160/213 (75%), Positives = 188/213 (88%)

Query:    39 VNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC 98
             +NPFT  P+TPRY+++ +KR+ LPV+EY+  F  +L ++Q  VLVGETGSGKTTQIPQWC
Sbjct:   115 INPFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWC 174

Query:    99 VEYSKSV-GAK-AVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
             VEY +S+ G K  VACTQPRRVAAMSVAQRV++EMD  LGQEVGYSIRFEDCSS KT+LK
Sbjct:   175 VEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILK 234

Query:   157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216
             YMTDGMLLRE M+DP+LE Y VI+LDEAHERTLATDILMGVLKEV++QR+DLK+++MSAT
Sbjct:   235 YMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSAT 294

Query:   217 LDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
             LDAGKFQ YFDN PL+ +PGRTHPVEIFYTPEP
Sbjct:   295 LDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEP 327

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1099786 Dhx15 "DEAH (Asp-Glu-Ala-His) box polypeptide 15" [Mus musculus (taxid:10090)]

 Score = 861 (308.1 bits), Expect = 1.3e-105, Sum P(2) = 1.3e-105
 Identities = 160/213 (75%), Positives = 188/213 (88%)

Query:    39 VNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC 98
             +NPFT  P+TPRY+++ +KR+ LPV+EY+  F  +L ++Q  VLVGETGSGKTTQIPQWC
Sbjct:   115 INPFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWC 174

Query:    99 VEYSKSV-GAK-AVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
             VEY +S+ G K  VACTQPRRVAAMSVAQRV++EMD  LGQEVGYSIRFEDCSS KT+LK
Sbjct:   175 VEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILK 234

Query:   157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216
             YMTDGMLLRE M+DP+LE Y VI+LDEAHERTLATDILMGVLKEV++QR+DLK+++MSAT
Sbjct:   235 YMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSAT 294

Query:   217 LDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
             LDAGKFQ YFDN PL+ +PGRTHPVEIFYTPEP
Sbjct:   295 LDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEP 327

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

RGD|1308072 Dhx15 "DEAH (Asp-Glu-Ala-His) box polypeptide 15" [Rattus norvegicus (taxid:10116)]

 Score = 861 (308.1 bits), Expect = 1.3e-105, Sum P(2) = 1.3e-105
 Identities = 160/213 (75%), Positives = 188/213 (88%)

Query:    39 VNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC 98
             +NPFT  P+TPRY+++ +KR+ LPV+EY+  F  +L ++Q  VLVGETGSGKTTQIPQWC
Sbjct:   115 INPFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWC 174

Query:    99 VEYSKSV-GAK-AVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
             VEY +S+ G K  VACTQPRRVAAMSVAQRV++EMD  LGQEVGYSIRFEDCSS KT+LK
Sbjct:   175 VEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILK 234

Query:   157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216
             YMTDGMLLRE M+DP+LE Y VI+LDEAHERTLATDILMGVLKEV++QR+DLK+++MSAT
Sbjct:   235 YMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSAT 294

Query:   217 LDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
             LDAGKFQ YFDN PL+ +PGRTHPVEIFYTPEP
Sbjct:   295 LDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEP 327

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

WB|WBGene00018967 F56D2.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 769 (275.8 bits), Expect = 4.8e-93, Sum P(2) = 4.8e-93
 Identities = 147/218 (67%), Positives = 179/218 (82%)

Query:    37 LQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQ 96
             +Q+NP+   P++ RY  +  KR  LPV+EY+ +FM LL  NQCI LVGETGSGKTTQIPQ
Sbjct:    52 IQINPYNNQPFSNRYWAIWEKRSQLPVWEYKEKFMELLRNNQCITLVGETGSGKTTQIPQ 111

Query:    97 WCVEYSKSV------G-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCS 149
             W VE+ K        G A+ VACTQPRRVAAMSVA RV+EEMD  LGQEVGYSIRFEDC 
Sbjct:   112 WAVEFMKQQQQGQPPGQARLVACTQPRRVAAMSVATRVAEEMDVVLGQEVGYSIRFEDCI 171

Query:   150 SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLK 209
             S +TVLKY TDGMLLRE M+ P+L+ Y+V++LDEAHERTLATDILMG++KE+++ RAD+K
Sbjct:   172 SERTVLKYCTDGMLLREAMNSPLLDKYKVLILDEAHERTLATDILMGLIKEIVRNRADIK 231

Query:   210 LVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTP 247
             +VIMSATLDAGKFQ+YF++ PL++VPGRT PVEIF+TP
Sbjct:   232 VVIMSATLDAGKFQRYFEDCPLLSVPGRTFPVEIFFTP 269

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0040020 "regulation of meiosis" evidence=IMP

GO:0040022 "feminization of hermaphroditic germ-line" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q20875	DHX15_CAEEL	3, ., 6, ., 4, ., 1, 3	0.6697	0.6986	0.2855	yes	N/A
Q54NJ4	DHX15_DICDI	3, ., 6, ., 4, ., 1, 3	0.6111	0.7086	0.2943	yes	N/A
Q5RAZ4	DHX15_PONAB	3, ., 6, ., 4, ., 1, 3	0.7417	0.6986	0.2654	yes	N/A
P53131	PRP43_YEAST	3, ., 6, ., 4, ., 1, 3	0.6509	0.6986	0.2750	yes	N/A
O43143	DHX15_HUMAN	3, ., 6, ., 4, ., 1, 3	0.7417	0.6986	0.2654	yes	N/A
O42945	DHX15_SCHPO	3, ., 6, ., 4, ., 1, 3	0.5672	0.7748	0.3183	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4	LOW CONFIDENCE prediction!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	302
COG1643	845	COG1643, HrpA, HrpA-like helicases [DNA replicatio	2e-97
TIGR01967	1283	TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H	5e-64
PRK11131	1294	PRK11131, PRK11131, ATP-dependent RNA helicase Hrp	7e-63
TIGR01970	819	TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H	4e-42
PRK11664	812	PRK11664, PRK11664, ATP-dependent RNA helicase Hrp	2e-34
cd00046	144	cd00046, DEXDc, DEAD-like helicases superfamily	6e-33
smart00487	201	smart00487, DEXDc, DEAD-like helicases superfamily	2e-26
cd01385	692	cd01385, MYSc_type_IX, Myosin motor domain, type I	1e-05
pfam04408	91	pfam04408, HA2, Helicase associated domain (HA2)	1e-05
PHA02653	675	PHA02653, PHA02653, RNA helicase NPH-II; Provision	3e-05
cd00124	679	cd00124, MYSc, Myosin motor domain	6e-05
smart00242	677	smart00242, MYSc, Myosin	3e-04
pfam00063	679	pfam00063, Myosin_head, Myosin head (motor domain)	8e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	0.003

>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair]

 Score =  305 bits (782), Expect = 2e-97
 Identities = 109/223 (48%), Positives = 154/223 (69%), Gaps = 2/223 (0%)

Query: 28  SVSTSIASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETG 87
           +    + + ++ +       +    ++   R  LPV   R E +  + QNQ +++VGETG
Sbjct: 16  AAMQEMKNQVRGSGMDARSRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETG 75

Query: 88  SGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFED 147
           SGKTTQ+PQ+ +E      A  + CTQPRR+AA SVA+RV+EE+  +LG+ VGYSIRFE 
Sbjct: 76  SGKTTQLPQFLLEEGL-GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFES 134

Query: 148 CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQ-RA 206
             SP+T +K MTDG+LLRE  +DP+L  Y V+++DEAHER+L TDIL+G+LK+++ + R 
Sbjct: 135 KVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRD 194

Query: 207 DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
           DLKL+IMSATLDA +F  YF NAP++ + GRT+PVEI Y PE 
Sbjct: 195 DLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEA 237

Length = 845

>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA

 Score =  217 bits (555), Expect = 5e-64
 Identities = 90/187 (48%), Positives = 131/187 (70%), Gaps = 1/187 (0%)

Query: 61  LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA 120
           LPV   R +    +A+NQ +++ GETGSGKTTQ+P+ C+E  +      +  TQPRR+AA
Sbjct: 66  LPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHG-LIGHTQPRRLAA 124

Query: 121 MSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVIL 180
            +VAQR++EE+   LG++VGY +RF D  S  T++K MTDG+LL E   D  L  Y  I+
Sbjct: 125 RTVAQRIAEELGTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTII 184

Query: 181 LDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHP 240
           +DEAHER+L  D L+G LK+++ +R DLK++I SAT+D  +F ++F+NAP++ V GRT+P
Sbjct: 185 IDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYP 244

Query: 241 VEIFYTP 247
           VE+ Y P
Sbjct: 245 VEVRYRP 251

This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 1283

>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional

 Score =  214 bits (547), Expect = 7e-63
 Identities = 87/187 (46%), Positives = 132/187 (70%), Gaps = 1/187 (0%)

Query: 61  LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA 120
           LPV + + + +  +  +Q +++ GETGSGKTTQ+P+ C+E  + V    +  TQPRR+AA
Sbjct: 73  LPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKG-LIGHTQPRRLAA 131

Query: 121 MSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVIL 180
            +VA R++EE++ +LG  VGY +RF D  S  T++K MTDG+LL E   D +L  Y  I+
Sbjct: 132 RTVANRIAEELETELGGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTII 191

Query: 181 LDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHP 240
           +DEAHER+L  D ++G LKE++ +R DLK++I SAT+D  +F ++F+NAP++ V GRT+P
Sbjct: 192 IDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSRHFNNAPIIEVSGRTYP 251

Query: 241 VEIFYTP 247
           VE+ Y P
Sbjct: 252 VEVRYRP 258

Length = 1294

>gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB

 Score =  154 bits (390), Expect = 4e-42
 Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 13/204 (6%)

Query: 61  LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIP----QWCVEYSKSVGAKAVACTQPR 116
           LP+          LA +  +VL    G+GK+T +P           K      +   +PR
Sbjct: 1   LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGK------IIMLEPR 54

Query: 117 RVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENY 176
           R+AA S AQR++ ++   +GQ VGY +R E+  S +T L+ +T+G+L R    DP L+  
Sbjct: 55  RLAARSAAQRLASQLGEAVGQTVGYRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGV 114

Query: 177 QVILLDEAHERTLATDILMGVLKEVIKQ-RADLKLVIMSATLDAGKFQQYFDNAPLMNVP 235
             ++ DE HER+L  D+ + +  +V    R DLK++ MSATLD  +      +AP++   
Sbjct: 115 GALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGERLSSLLPDAPVVESE 174

Query: 236 GRTHPVEIFYTPEPPLGAGPWLPQ 259
           GR+ PVEI Y P            
Sbjct: 175 GRSFPVEIRYLPLRG--DQRLEDA 196

This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 819

>gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional

 Score =  132 bits (334), Expect = 2e-34
 Identities = 74/190 (38%), Positives = 112/190 (58%), Gaps = 7/190 (3%)

Query: 61  LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA 120
           LPV     E +T L     ++L   TG+GK+T +P   ++    +  K +   +PRR+AA
Sbjct: 4   LPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQ-HGGINGKIIM-LEPRRLAA 61

Query: 121 MSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVIL 180
            +VAQR++E++  + G+ VGY +R E    P T L+ +T+G+L R    DP L    +++
Sbjct: 62  RNVAQRLAEQLGEKPGETVGYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVI 121

Query: 181 LDEAHERTLATDILMGVLKEVIKQ---RADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237
           LDE HER+L  D+ + +L +V  Q   R DLKL+IMSATLD  + QQ   +AP++   GR
Sbjct: 122 LDEFHERSLQADLALALLLDV--QQGLRDDLKLLIMSATLDNDRLQQLLPDAPVIVSEGR 179

Query: 238 THPVEIFYTP 247
           + PVE  Y P
Sbjct: 180 SFPVERRYQP 189

Length = 812

>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily

 Score =  117 bits (296), Expect = 6e-33
 Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 10/145 (6%)

Query: 80  IVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEV 139
           ++L   TGSGKT       +E   S+    V    P R  A  VA+R+ E      G +V
Sbjct: 3   VLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKV 60

Query: 140 GYSIRFEDCS------SPKTVLKYMTDGMLLREGMSDPM-LENYQVILLDEAHERTLATD 192
           GY I            S KT +   T G LL E     + L+   +++LDEAH       
Sbjct: 61  GYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGF 120

Query: 193 ILMGVLKEVIKQRADLKLVIMSATL 217
            L+G LK ++K   D +++++SAT 
Sbjct: 121 GLLG-LKILLKLPKDRQVLLLSATP 144

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144

>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily

 Score =  102 bits (257), Expect = 2e-26
 Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 16/185 (8%)

Query: 73  LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMD 132
           LL+  + ++L   TGSGKT       +E  K      V    P R  A   A+ + +   
Sbjct: 20  LLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGGRVLVLVPTRELAEQWAEELKKLGP 79

Query: 133 CQLGQEVGY------SIRFEDCSSPKTVLKYMTDGMLLREGMSDPM-LENYQVILLDEAH 185
               + VG         +     S KT +   T G LL    +D + L N  +++LDEAH
Sbjct: 80  SLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDKLSLSNVDLVILDEAH 139

Query: 186 ERT--LATDILMGVLKEVIKQRADLKLVIMSATL--DAGKFQQYFDNAPLMNVPGRT--H 239
                   D L  +LK + K     +L+++SAT   +     + F N P+    G T   
Sbjct: 140 RLLDGGFGDQLEKLLKLLPKNV---QLLLLSATPPEEIENLLELFLNDPVFIDVGFTPLE 196

Query: 240 PVEIF 244
           P+E F
Sbjct: 197 PIEQF 201

Length = 201

>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 30/88 (34%), Positives = 36/88 (40%), Gaps = 16/88 (18%)

Query: 16  KNREERLATVNASVSTSIASNL-QVNPFTGYP-YTPRYHELHRKRITLPVFE-------- 65
           KN   R       + T   S L  VNPF   P Y P+Y  L+  +  L            
Sbjct: 25  KNLRHRFL--QGHIYTYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIAD 82

Query: 66  --YRTEFMTLLAQNQCIVLVGETGSGKT 91
             Y    M     NQCIV+ GE+GSGKT
Sbjct: 83  VAYYN--MLRKKVNQCIVISGESGSGKT 108

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 692

>gnl|CDD|218070 pfam04408, HA2, Helicase associated domain (HA2)

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 258 PQCFTRPNEAKKAADDAKMRFAHIDGDHLTLL 289
           P  F RP E ++ AD A+ +FA  + DHLTLL
Sbjct: 60  PSPFYRPKEKEEEADAARRKFASAESDHLTLL 91

This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. Length = 91

>gnl|CDD|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 173 LENYQVILLDEAHERTLATDILMGVL-KEVIKQRADLKLVIMSATL--DAGKFQQYFDNA 229
           L +Y  +++DE HE     DI++ V  K + K R+   L +M+ATL  D  + +++F N 
Sbjct: 289 LFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRS---LFLMTATLEDDRDRIKEFFPNP 345

Query: 230 PLMNVPGRT 238
             +++PG T
Sbjct: 346 AFVHIPGGT 354

Length = 675

>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 12/64 (18%)

Query: 39  VNPFTGYP-YTPRYHEL--HRKRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
           VNP+   P Y P        + R  LP  VF      YR   M    +NQ I++ GE+G+
Sbjct: 40  VNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYR--NMLRDRRNQSIIISGESGA 97

Query: 89  GKTT 92
           GKT 
Sbjct: 98  GKTE 101

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 679

>gnl|CDD|214580 smart00242, MYSc, Myosin

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 12/64 (18%)

Query: 39  VNPFTGYP-YTPRYHEL--HRKRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
           VNP+   P YT    +    + R  LP  VF      YR   M    +NQ I++ GE+G+
Sbjct: 46  VNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIADNAYRN--MLNDKENQSIIISGESGA 103

Query: 89  GKTT 92
           GKT 
Sbjct: 104 GKTE 107

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin. Length = 677

>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain)

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 12/64 (18%)

Query: 39  VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
           VNP+   P YT      +R  +R  LP  +F      YR   M    +NQCIV+ GE+G+
Sbjct: 39  VNPYKRLPIYTEEPIGEYRGKRRGELPPHIFALADRAYR--HMLRDKENQCIVISGESGA 96

Query: 89  GKTT 92
           GKT 
Sbjct: 97  GKTE 100

Length = 679

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 37.4 bits (86), Expect = 0.003
 Identities = 21/149 (14%), Positives = 40/149 (26%), Gaps = 29/149 (19%)

Query: 76  QNQCIVLVGETGSGKTTQIPQWCVEYSK-SVGAKAVACTQPRRVAAMSVAQRVSEEMDCQ 134
             + I++VG  GSGKTT       E      G   +            +   +       
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60

Query: 135 LGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH-----ERTL 189
              E+   +        K                         V++LDE       E+  
Sbjct: 61  GSGELRLRLALALARKLK-----------------------PDVLILDEITSLLDAEQEA 97

Query: 190 ATDILMGVLKEVIKQRADLKLVIMSATLD 218
              +L  +   ++ +      VI++   +
Sbjct: 98  LLLLLEELRLLLLLKSEKNLTVILTTNDE 126

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
KOG0925|consensus	699		100.0
KOG0922|consensus	674		100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
KOG0923|consensus	902		100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
KOG0924|consensus	1042		100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
COG1643	845	HrpA HrpA-like helicases [DNA replication, recombi	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.98
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.98
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.98
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.98
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.98
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.98
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.97
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.97
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.97
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.97
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.97
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.97
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.97
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.97
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.97
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.97
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.97
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.97
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.97
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.97
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.97
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.97
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.97
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.97
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.97
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.97
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.97
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.97
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.97
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.97
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.97
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.97
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.97
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.97
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.97
cd03246	173	ABCC_Protease_Secretion This family represents the	99.97
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.97
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.97
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.97
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.97
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.97
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.97
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.97
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.97
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.97
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.97
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.97
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.97
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.97
PRK10908	222	cell division protein FtsE; Provisional	99.97
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.97
COG1123	539	ATPase components of various ABC-type transport sy	99.97
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.97
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.97
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.97
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.97
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.97
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.97
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.97
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.97
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.97
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.97
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.97
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.97
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.97
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.97
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.97
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.97
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.97
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.97
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.97
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.97
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.97
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.97
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.97
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.97
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.97
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.97
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.97
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.96
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.96
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.96
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.96
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.96
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.96
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.96
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.96
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.96
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.96
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.96
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.96
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.96
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.96
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.96
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.96
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.96
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.96
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.96
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.96
COG4559	259	ABC-type hemin transport system, ATPase component	99.96
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.96
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.96
KOG0920|consensus	924		99.96
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.96
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.96
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.96
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.96
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.96
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.96
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.96
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.96
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.96
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.96
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.96
PRK10938	490	putative molybdenum transport ATP-binding protein	99.96
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.96
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.96
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.96
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.96
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.96
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.96
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.96
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.96
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.96
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.96
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.96
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.96
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.96
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.96
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.96
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.96
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.96
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.96
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.96
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.96
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.96
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.96
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.96
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.96
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.96
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.96
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.96
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.96
COG4181	228	Predicted ABC-type transport system involved in ly	99.96
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.96
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.96
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.96
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.96
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.96
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.96
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.96
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.96
COG1123	539	ATPase components of various ABC-type transport sy	99.96
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.96
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.96
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.96
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.96
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.96
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.96
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.96
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.96
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.96
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.96
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.96
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.96
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.96
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.96
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.96
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.95
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.95
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.95
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.95
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.95
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.95
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.95
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.95
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.95
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.95
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.95
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.95
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.95
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.95
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.95
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.95
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.95
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.95
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.95
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.95
KOG0058|consensus	716		99.95
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.95
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.95
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.95
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.95
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.95
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.95
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.95
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.95
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.95
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.95
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.95
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.95
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.95
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.95
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.95
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.95
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.95
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.95
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.95
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.95
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.95
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.95
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.95
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.94
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.94
PRK13409	590	putative ATPase RIL; Provisional	99.94
COG4172	534	ABC-type uncharacterized transport system, duplica	99.94
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.94
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.94
KOG0926|consensus	1172		99.94
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.94
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.94
COG4988	559	CydD ABC-type transport system involved in cytochr	99.94
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.94
KOG0055|consensus	1228		99.94
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.94
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.94
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.94
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.94
TIGR01967	1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	99.94
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.94
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.94
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.94
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.94
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.94
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.94
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.94
PRK10938	490	putative molybdenum transport ATP-binding protein	99.94
PRK13409	590	putative ATPase RIL; Provisional	99.94
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.94
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.94
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.94
COG4987	573	CydC ABC-type transport system involved in cytochr	99.94
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.94
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.94
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.94
PRK11147	635	ABC transporter ATPase component; Reviewed	99.94
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.94
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.94
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.94
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.94
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.93
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.93
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.93
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.93
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.93
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.93
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.93
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.93
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.93
PRK11147	635	ABC transporter ATPase component; Reviewed	99.93
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.93
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.93
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.93
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.93
COG4172	534	ABC-type uncharacterized transport system, duplica	99.93
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.93
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.93
PLN03211	659	ABC transporter G-25; Provisional	99.93
KOG0057|consensus	591		99.92
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.92
KOG0055|consensus	1228		99.92
PLN03073	718	ABC transporter F family; Provisional	99.92
PRK11131	1294	ATP-dependent RNA helicase HrpA; Provisional	99.92
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.92
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.92
COG0488	530	Uup ATPase components of ABC transporters with dup	99.92
PLN03232	1495	ABC transporter C family member; Provisional	99.92
PLN03130	1622	ABC transporter C family member; Provisional	99.92
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.92
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.91
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.91
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.91
PLN03073	718	ABC transporter F family; Provisional	99.91
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.91
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.91
PTZ00243	1560	ABC transporter; Provisional	99.91
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.9
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.9
KOG0059|consensus	885		99.89
PLN03140	1470	ABC transporter G family member; Provisional	99.89
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.89
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.89
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.89
COG0488	530	Uup ATPase components of ABC transporters with dup	99.89
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.89
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.89
PLN03140	1470	ABC transporter G family member; Provisional	99.89
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.88
KOG0056|consensus	790		99.88
PLN03130	1622	ABC transporter C family member; Provisional	99.88
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.88
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.87
PLN03232	1495	ABC transporter C family member; Provisional	99.87
PTZ00243	1560	ABC transporter; Provisional	99.87
PRK11664	812	ATP-dependent RNA helicase HrpB; Provisional	99.86
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.85
TIGR01970	819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	99.85
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.85
KOG0061|consensus	613		99.85
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.84
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.84
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.84
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.83
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.83
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.82
KOG0054|consensus	1381		99.82
KOG0054|consensus	1381		99.81
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.81
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.81
KOG0927|consensus	614		99.81
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.8
KOG0062|consensus	582		99.8
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.79
KOG0927|consensus	614		99.79
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.79
COG4178	604	ABC-type uncharacterized transport system, permeas	99.78
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.78
KOG2355|consensus	291		99.74
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.73
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.71
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.71
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.71
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.7
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.7
KOG0062|consensus	582		99.69
KOG0060|consensus	659		99.68
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.67
KOG0066|consensus	807		99.67
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.66
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.66
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.65
KOG0065|consensus	1391		99.65
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.64
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.64
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.64
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.63
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.62
KOG0064|consensus	728		99.59
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.51
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.5
KOG0066|consensus	807		99.5
PHA02653	675	RNA helicase NPH-II; Provisional	99.49
KOG0921|consensus	1282		99.48
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.46
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.46
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.39
KOG0063|consensus	592		99.38
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.35
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.3
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.28
KOG0065|consensus	1391		99.26
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.25
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.25
PRK13695	174	putative NTPase; Provisional	99.24
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.21
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.17
KOG0063|consensus	592		99.14
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.14
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.13
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.12
COG3910	233	Predicted ATPase [General function prediction only	99.08
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.08
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.04
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.02
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.02
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	98.99
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	98.96
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.96
PRK06067	234	flagellar accessory protein FlaH; Validated	98.93
PRK10869	553	recombination and repair protein; Provisional	98.89
cd01128	249	rho_factor Transcription termination factor rho is	98.88
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.86
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.83
PHA02562	562	46 endonuclease subunit; Provisional	98.82
PRK03918	880	chromosome segregation protein; Provisional	98.79
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.79
smart00382	148	AAA ATPases associated with a variety of cellular	98.78
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.76
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.76
PRK10246	1047	exonuclease subunit SbcC; Provisional	98.69
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.69
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.66
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.66
PRK10416	318	signal recognition particle-docking protein FtsY;	98.64
PRK01156	895	chromosome segregation protein; Provisional	98.64
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.63
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.63
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.54
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.54
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.46
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.45
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.44
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.43
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	98.41
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.4
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.36
PRK09183	259	transposase/IS protein; Provisional	98.36
PRK02224	880	chromosome segregation protein; Provisional	98.35
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.33
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.32
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.3
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.28
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.28
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.28
PRK13830	818	conjugal transfer protein TrbE; Provisional	98.27
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.25
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.25
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.22
COG4637	373	Predicted ATPase [General function prediction only	98.22
PRK13764	602	ATPase; Provisional	98.21
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	98.2
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.2
PRK14974	336	cell division protein FtsY; Provisional	98.19
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.17
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.17
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.15
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.15
PRK09862	506	putative ATP-dependent protease; Provisional	98.15
PRK04296	190	thymidine kinase; Provisional	98.14
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.13

>KOG0925|consensus

Probab=100.00  E-value=1.2e-43  Score=321.53  Aligned_cols=254  Identities=63%  Similarity=0.979  Sum_probs=229.2

Q ss_pred             CCCCCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh
Q psy2071          39 VNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV  118 (302)
Q Consensus        39 ~~~~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~  118 (302)
                      .|||.+.|+++|||+++++|..||+|..++++...+..+++++++|++||||||++++++..+..... ..+.|+|++++
T Consensus        24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-~~v~CTQprrv  102 (699)
T KOG0925|consen   24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-TGVACTQPRRV  102 (699)
T ss_pred             cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-cceeecCchHH
Confidence            89999999999999999999999999999999999999999999999999999999999987654444 45789999999


Q ss_pred             hHHHHHHHhhhhhccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHH
Q psy2071         119 AAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVL  198 (302)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l  198 (302)
                      ++++++++|+++++.+.+++|||.++|+++...+|.++++++||++|.++...++..+.+||||||||++.++|.+++++
T Consensus       103 aamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGll  182 (699)
T KOG0925|consen  103 AAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLL  182 (699)
T ss_pred             HHHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcCCccceeecCCCCCCC-----------------CCCCcccc
Q psy2071         199 KEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGA-----------------GPWLPQCF  261 (302)
Q Consensus       199 ~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~~~~~~-----------------~~~l~~~~  261 (302)
                      ++++..+.+.+++||++|||.+.+..|++++++|+++| .+|||+||.++++.++                 |+.+ .|.
T Consensus       183 k~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDil-vFL  260 (699)
T KOG0925|consen  183 KEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDIL-VFL  260 (699)
T ss_pred             HHHHhhCCCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEE-EEe
Confidence            99999999999999999999999999999999999999 8999999999987643                 3433 577


Q ss_pred             cCchhHHHHhhHHHhHhhc--cCCCcchhhHHHHHH
Q psy2071         262 TRPNEAKKAADDAKMRFAH--IDGDHLTLLNVYHAF  295 (302)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~--~~gD~ltll~l~~a~  295 (302)
                      .+.++++.++..+......  .++..+.+.++|-+-
T Consensus       261 tgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP~~  296 (699)
T KOG0925|consen  261 TGEEEIEDACRKISREVDNLGPQVGPLKVVPLYPAQ  296 (699)
T ss_pred             cCHHHHHHHHHHHHHHHHhhccccCCceEEecCchh
Confidence            7788888777666544433  334567777777433

>KOG0922|consensus

Probab=100.00  E-value=1.6e-41  Score=319.07  Aligned_cols=243  Identities=52%  Similarity=0.873  Sum_probs=217.3

Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhh
Q psy2071          51 YHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEE  130 (302)
Q Consensus        51 ~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~  130 (302)
                      ...+...|..||++++++.|...++.+++++|+|++||||||++++.+..-.++.... |.++||||+++++++.+|+++
T Consensus        40 ~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~-I~~TQPRRVAavslA~RVAeE  118 (674)
T KOG0922|consen   40 NLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGK-IACTQPRRVAAVSLAKRVAEE  118 (674)
T ss_pred             ccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCc-EEeecCchHHHHHHHHHHHHH
Confidence            3456788899999999999999999999999999999999999999987655554323 899999999999999999999


Q ss_pred             hccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcE
Q psy2071         131 MDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKL  210 (302)
Q Consensus       131 ~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~  210 (302)
                      ++..+++.|||.+||++....+|++++|++|+++|.++.++++.++++||||||||++..+|.++++|+++++.+.++++
T Consensus       119 ~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lkl  198 (674)
T KOG0922|consen  119 MGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKL  198 (674)
T ss_pred             hCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCHHHHHhhccCCCeeeecCcCCccceeecCCCCCCC-----------------CCCCcccccCchhHHHHhhH
Q psy2071         211 VIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGA-----------------GPWLPQCFTRPNEAKKAADD  273 (302)
Q Consensus       211 ~ii~~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~~~~~~~~~~~  273 (302)
                      +|+++|.|.+.+.+||..+.++.|+||.|||+++|.+.|..+|                 ++.+ +|.+++++++..+..
T Consensus       199 IimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDIL-vFLtGqeEIe~~~~~  277 (674)
T KOG0922|consen  199 IIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDIL-VFLTGQEEIEAACEL  277 (674)
T ss_pred             EEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEE-EEeCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999876643                 4433 688889999988888


Q ss_pred             HHhHhhccCCC-cchhhHHHHHH
Q psy2071         274 AKMRFAHIDGD-HLTLLNVYHAF  295 (302)
Q Consensus       274 ~~~~~~~~~gD-~ltll~l~~a~  295 (302)
                      +.....+...+ ..-++++|.++
T Consensus       278 l~e~~~~~~~~~~~~~lply~aL  300 (674)
T KOG0922|consen  278 LRERAKSLPEDCPELILPLYGAL  300 (674)
T ss_pred             HHHHhhhccccCcceeeeecccC
Confidence            87766555443 23556677664

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-42  Score=286.66  Aligned_cols=187  Identities=19%  Similarity=0.191  Sum_probs=149.6

Q ss_pred             hcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-hH-------HHHHHHhhh
Q psy2071          58 RITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-AA-------MSVAQRVSE  129 (302)
Q Consensus        58 r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-~~-------~~~~~~~~~  129 (302)
                      .+.+....++++|++.|++||+++|+||+||||||||+||.++..|++|.|.++|...... ..       ..+.|....
T Consensus         9 ~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnL   88 (240)
T COG1126           9 SKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNL   88 (240)
T ss_pred             eEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccc
Confidence            3456667789999999999999999999999999999999999999999999999654211 11       123344444


Q ss_pred             hhccccccceeeeeee--------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071         130 EMDCQLGQEVGYSIRF--------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL  189 (302)
Q Consensus       130 ~~~~~~~~~v~~~~~~--------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~  189 (302)
                      ++..++.+|+.+....                    ......+.....|||||+||++|||||+.+|+++++||   ||+
T Consensus        89 FPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE---PTS  165 (240)
T COG1126          89 FPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE---PTS  165 (240)
T ss_pred             cccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC---Ccc
Confidence            5567777777665421                    11112344567799999999999999999999999999   999


Q ss_pred             chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecC----cCCccceeecCC
Q psy2071         190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG----RTHPVEIFYTPE  248 (302)
Q Consensus       190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g----~~~~~~~~~~~~  248 (302)
                      +|||.+ ..+.+++..+.+.|.|++++||++.++.+.+||+++|+ .|    .+.|.++|..|.
T Consensus       166 ALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd-~G~iie~g~p~~~f~~p~  228 (240)
T COG1126         166 ALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMD-QGKIIEEGPPEEFFDNPK  228 (240)
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEee-CCEEEEecCHHHHhcCCC
Confidence            999988 88888888888889999999999999999999999999 55    346666665553

>KOG0923|consensus

Probab=100.00  E-value=9.3e-39  Score=298.41  Aligned_cols=244  Identities=52%  Similarity=0.844  Sum_probs=219.6

Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhh
Q psy2071          51 YHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEE  130 (302)
Q Consensus        51 ~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~  130 (302)
                      -..+...|+.||++.+++++..+|+.++++.|+|++||||||++|+.+-.-..+.|...|.|+||+|+++++++.+|+++
T Consensus       254 ~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~E  333 (902)
T KOG0923|consen  254 RESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEE  333 (902)
T ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHH
Confidence            34567779999999999999999999999999999999999999999877777888778999999999999999999999


Q ss_pred             hccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcE
Q psy2071         131 MDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKL  210 (302)
Q Consensus       131 ~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~  210 (302)
                      ++...+.+|||.++|+++.+..|.+++|++||+.|..+....+..+++||+|||||+|.++|.+..+++++.+.+.+++.
T Consensus       334 MgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKl  413 (902)
T KOG0923|consen  334 MGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKL  413 (902)
T ss_pred             hCcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCHHHHHhhccCCCeeeecCcCCccceeecCCCCCCC-----------------CCCCcccccCchhHHHHhhH
Q psy2071         211 VIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGA-----------------GPWLPQCFTRPNEAKKAADD  273 (302)
Q Consensus       211 ~ii~~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~~~~~~~~~~~  273 (302)
                      .|.++|.|.+.+..|||.++++.+|||-|||++||.+.|+.+|                 ++.+ +|+.+++++......
T Consensus       414 lIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDIL-VFltGQeEIEt~~e~  492 (902)
T KOG0923|consen  414 LISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDIL-VFLTGQEEIETVKEN  492 (902)
T ss_pred             EeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEE-EEeccHHHHHHHHHH
Confidence            9999999999999999999999999999999999999887643                 3333 577888887766655


Q ss_pred             HHhHh--hccCCCcchhhHHHHHH
Q psy2071         274 AKMRF--AHIDGDHLTLLNVYHAF  295 (302)
Q Consensus       274 ~~~~~--~~~~gD~ltll~l~~a~  295 (302)
                      +..+.  ....+.-+.++++|+.+
T Consensus       493 l~~~~~~LGski~eliv~PiYaNL  516 (902)
T KOG0923|consen  493 LKERCRRLGSKIRELIVLPIYANL  516 (902)
T ss_pred             HHHHHHHhccccceEEEeeccccC
Confidence            54433  33345678889998765

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.2e-39  Score=276.10  Aligned_cols=172  Identities=15%  Similarity=0.118  Sum_probs=142.2

Q ss_pred             cCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh--hHHHHHHHhhhhhccccc
Q psy2071          59 ITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV--AAMSVAQRVSEEMDCQLG  136 (302)
Q Consensus        59 ~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~  136 (302)
                      +.++...++++|++.|.+||+++|+|||||||||||++++|+..|++|++.+.|......  ....+.|.....++.++.
T Consensus        11 ~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~   90 (248)
T COG1116          11 KSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVL   90 (248)
T ss_pred             EEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHH
Confidence            344556779999999999999999999999999999999999999999999998764221  223344555567788999


Q ss_pred             cceeeeeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H
Q psy2071         137 QEVGYSIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G  196 (302)
Q Consensus       137 ~~v~~~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~  196 (302)
                      +||.+.+......                   ..+.....||||||||++|||||+.+|++|+|||   |+.++|... .
T Consensus        91 ~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE---PFgALDalTR~  167 (248)
T COG1116          91 DNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE---PFGALDALTRE  167 (248)
T ss_pred             hhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC---CcchhhHHHHH
Confidence            9999887654311                   2345567799999999999999999999999999   999999888 4


Q ss_pred             HHHHHHH-HcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         197 VLKEVIK-QRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       197 ~l~~ll~-~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      .+.+.+. .+.+.+.|++++|||++++..++|||++|.
T Consensus       168 ~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~  205 (248)
T COG1116         168 ELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLS  205 (248)
T ss_pred             HHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEec
Confidence            5555444 456678999999999999999999999998

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=2.2e-39  Score=274.49  Aligned_cols=191  Identities=19%  Similarity=0.235  Sum_probs=156.2

Q ss_pred             ChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-------hHHHHHHHhhhhhccc
Q psy2071          62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-------AAMSVAQRVSEEMDCQ  134 (302)
Q Consensus        62 p~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~  134 (302)
                      -...+.+++++.|++|++++++|||||||||+|++|.+++.|++|+|.++|.+....       ...++.|.+..++..+
T Consensus        12 ~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~T   91 (309)
T COG1125          12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLT   91 (309)
T ss_pred             CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCcc
Confidence            345578999999999999999999999999999999999999999999999875433       3345566677788899


Q ss_pred             cccceeeeeeecCCC---------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         135 LGQEVGYSIRFEDCS---------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       135 ~~~~v~~~~~~~~~~---------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      +.+|++....+..+.                     ..++....|||||+||+.+||||+.+|++|+|||   |+.++|+
T Consensus        92 v~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDE---PFgALDp  168 (309)
T COG1125          92 VAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDE---PFGALDP  168 (309)
T ss_pred             HHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecC---CccccCh
Confidence            999998877554332                     2345567799999999999999999999999999   9999999


Q ss_pred             HH-HHHHHHHH-HcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecCCCCCCCCCCCcccc
Q psy2071         194 LM-GVLKEVIK-QRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTPEPPLGAGPWLPQCF  261 (302)
Q Consensus       194 ~~-~~l~~ll~-~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~~~~~~~~~~l~~~~  261 (302)
                      +. ..+.+.+. ..++.++||+++|||++++..++|++++|+ .|+.    .|.++...|.     .+|+..++
T Consensus       169 I~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~-~G~i~Q~~~P~~il~~Pa-----n~FV~~f~  236 (309)
T COG1125         169 ITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMD-AGEIVQYDTPDEILANPA-----NDFVEDFF  236 (309)
T ss_pred             hhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEec-CCeEEEeCCHHHHHhCcc-----HHHHHHHh
Confidence            98 55665555 345679999999999999999999999999 6654    5666655553     45665554

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-39  Score=292.65  Aligned_cols=189  Identities=18%  Similarity=0.208  Sum_probs=156.6

Q ss_pred             hhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc-----hhhhHHHHHHHhhhhh
Q psy2071          57 KRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP-----RRVAAMSVAQRVSEEM  131 (302)
Q Consensus        57 ~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~-----~~~~~~~~~~~~~~~~  131 (302)
                      ..+.+....+++++++.|++||+++|+|||||||||+|++|+|+..|++|+|.++|.+.     .+.....+.|..+.++
T Consensus        11 v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFP   90 (352)
T COG3842          11 VSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFP   90 (352)
T ss_pred             eeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCC
Confidence            34456666678999999999999999999999999999999999999999999998764     3344456677778889


Q ss_pred             ccccccceeeeeeecCCC--------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071         132 DCQLGQEVGYSIRFEDCS--------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT  191 (302)
Q Consensus       132 ~~~~~~~v~~~~~~~~~~--------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l  191 (302)
                      .+++.+||+|.++.....                    ..++.+..|||||+|||+|||||+.+|++|+|||   |.+++
T Consensus        91 HltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE---PlSaL  167 (352)
T COG3842          91 HMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE---PLSAL  167 (352)
T ss_pred             CCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC---cccch
Confidence            999999999999833211                    1234556699999999999999999999999999   99999


Q ss_pred             HHHH-HHH-HHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee---ecCcCCccceeecCC
Q psy2071         192 DILM-GVL-KEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN---VPGRTHPVEIFYTPE  248 (302)
Q Consensus       192 D~~~-~~l-~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~---i~g~~~~~~~~~~~~  248 (302)
                      |..+ ..+ .++.+..++.|+|.|++|||-+++..++|||++|+   |...++|.++|..|.
T Consensus       168 D~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~  229 (352)
T COG3842         168 DAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPA  229 (352)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcc
Confidence            9776 444 44444456679999999999999999999999999   333458888887775

>KOG0924|consensus

Probab=100.00  E-value=1.9e-36  Score=283.55  Aligned_cols=240  Identities=48%  Similarity=0.786  Sum_probs=211.5

Q ss_pred             HHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcc
Q psy2071          54 LHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDC  133 (302)
Q Consensus        54 l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~  133 (302)
                      +...|+.||++.+++++...|.++++++|+|++||||||+|.+.+.+..... ...|.|+||+++++++++.+++.+++.
T Consensus       348 i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~-~GmIGcTQPRRvAAiSVAkrVa~EM~~  426 (1042)
T KOG0924|consen  348 IREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYAD-NGMIGCTQPRRVAAISVAKRVAEEMGV  426 (1042)
T ss_pred             HHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccccc-CCeeeecCchHHHHHHHHHHHHHHhCC
Confidence            5677889999999999999999999999999999999999999765543222 336889999999999999999999999


Q ss_pred             ccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy2071         134 QLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIM  213 (302)
Q Consensus       134 ~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii  213 (302)
                      ++++.|||.++|++....+|.+++|+.|.+.|..|...++.++++||||||||++.++|.+++++++++.++.+++++|.
T Consensus       427 ~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVt  506 (1042)
T KOG0924|consen  427 TLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVT  506 (1042)
T ss_pred             ccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCHHHHHhhccCCCeeeecCcCCccceeecCCCCCCC-----------------CCCCcccccCchhHHHHhhHHHh
Q psy2071         214 SATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGA-----------------GPWLPQCFTRPNEAKKAADDAKM  276 (302)
Q Consensus       214 ~~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~~~~~~~~~~~~~~  276 (302)
                      ++|.|.+.+..||..++.++|+||.|||+++|...|.++|                 ++.+ .|.++++.++..+..+..
T Consensus       507 SATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~Gdil-IfmtGqediE~t~~~i~~  585 (1042)
T KOG0924|consen  507 SATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDIL-IFMTGQEDIECTCDIIKE  585 (1042)
T ss_pred             eccccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEE-EecCCCcchhHHHHHHHH
Confidence            9999999999999999999999999999999998886543                 2322 455677777766655555


Q ss_pred             Hhh---ccCCCcchhhHHHHHH
Q psy2071         277 RFA---HIDGDHLTLLNVYHAF  295 (302)
Q Consensus       277 ~~~---~~~gD~ltll~l~~a~  295 (302)
                      .+.   ..++..+.+|++|.++
T Consensus       586 ~l~ql~~~~~~~L~vlpiYSQL  607 (1042)
T KOG0924|consen  586 KLEQLDSAPTTDLAVLPIYSQL  607 (1042)
T ss_pred             HHHhhhcCCCCceEEEeehhhC
Confidence            443   3334578999999876

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.6e-38  Score=274.09  Aligned_cols=165  Identities=16%  Similarity=0.191  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc------hhhhHHHHHHHhhhhhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP------RRVAAMSVAQRVSEEMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v  139 (302)
                      ++++|++.|++|++++|+||||||||||++.++|+++|.+|++.+.|...      .+++++.+...+...+..++.+.|
T Consensus        19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V   98 (254)
T COG1121          19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVV   98 (254)
T ss_pred             eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHH
Confidence            68999999999999999999999999999999999999999999988743      234444443333333445555544


Q ss_pred             eeee--e---------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         140 GYSI--R---------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       140 ~~~~--~---------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      ....  +                     .......++.+..|||||+||+.|||||+.+|++|+|||   |+.++|+.. 
T Consensus        99 ~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDE---P~~gvD~~~~  175 (254)
T COG1121          99 LLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDE---PFTGVDVAGQ  175 (254)
T ss_pred             HccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecC---CcccCCHHHH
Confidence            3321  0                     011123466788899999999999999999999999999   999999988 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      ..+.++++++++.|+||+++|||++.+.++||++++|+
T Consensus       176 ~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln  213 (254)
T COG1121         176 KEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN  213 (254)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc
Confidence            78999999887779999999999999999999999998

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-38  Score=286.29  Aligned_cols=189  Identities=18%  Similarity=0.242  Sum_probs=156.5

Q ss_pred             hhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc-----hhhhHHHHHHHhhhhh
Q psy2071          57 KRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP-----RRVAAMSVAQRVSEEM  131 (302)
Q Consensus        57 ~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~-----~~~~~~~~~~~~~~~~  131 (302)
                      ..+.+....+++++++.|++||+++|+|||||||||+|++|+|+..|++|+|.|.|...     .......+.|..+.++
T Consensus         9 v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyP   88 (338)
T COG3839           9 VRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYP   88 (338)
T ss_pred             eEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccC
Confidence            33445443368999999999999999999999999999999999999999999998753     3344455667778889


Q ss_pred             ccccccceeeeeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071         132 DCQLGQEVGYSIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD  192 (302)
Q Consensus       132 ~~~~~~~v~~~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD  192 (302)
                      .+++.+|++|.++.....                   ..++.+..|||||+|||++||||+.+|++++|||   |.+++|
T Consensus        89 hmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE---PlSnLD  165 (338)
T COG3839          89 HMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE---PLSNLD  165 (338)
T ss_pred             CCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC---chhHhh
Confidence            999999999999765322                   2345677899999999999999999999999999   999999


Q ss_pred             HHH-HHHHHHHHH-cCCCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecCCC
Q psy2071         193 ILM-GVLKEVIKQ-RADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTPEP  249 (302)
Q Consensus       193 ~~~-~~l~~ll~~-~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~~~  249 (302)
                      ..+ ..++..+++ .++.+.|+|.+|||..++..++|++++|+ .|+    +.|.++|..|..
T Consensus       166 a~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~-~G~i~Q~g~p~ely~~P~n  227 (338)
T COG3839         166 AKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMN-DGRIQQVGTPLELYERPAN  227 (338)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEe-CCeeeecCChHHHhhCccc
Confidence            777 445555543 45678999999999999999999999999 554    478888877653

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.6e-38  Score=271.14  Aligned_cols=191  Identities=16%  Similarity=0.192  Sum_probs=155.1

Q ss_pred             HhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeec---Cchh-----hhHHHHHHHh
Q psy2071          56 RKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT---QPRR-----VAAMSVAQRV  127 (302)
Q Consensus        56 ~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~---~~~~-----~~~~~~~~~~  127 (302)
                      ...+.++.+.+.++|++.|+.||.++|+|||||||||||++|+|++.|+.|.|.++|.   +...     .....+.|..
T Consensus         7 ~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~Y   86 (345)
T COG1118           7 NVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHY   86 (345)
T ss_pred             hhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEech
Confidence            3345577777788999999999999999999999999999999999999999999987   3322     2223445566


Q ss_pred             hhhhccccccceeeeeeecCCC---------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071         128 SEEMDCQLGQEVGYSIRFEDCS---------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE  186 (302)
Q Consensus       128 ~~~~~~~~~~~v~~~~~~~~~~---------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~  186 (302)
                      +.++.+++.+||+|.++.....                     ..++.+..|||||+||+++||||+.+|++|+|||   
T Consensus        87 ALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDE---  163 (345)
T COG1118          87 ALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE---  163 (345)
T ss_pred             hhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecC---
Confidence            6778899999999998654221                     1233455699999999999999999999999999   


Q ss_pred             CCcchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecCCCC
Q psy2071         187 RTLATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTPEPP  250 (302)
Q Consensus       187 p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~~~~  250 (302)
                      |+.++|... ..++..+.+.. +.|.|.+++|||.+++.++||++.+|+ .|+    +.|.++|..|...
T Consensus       164 Pf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~-~G~Ieqvg~p~ev~~~P~s~  232 (345)
T COG1118         164 PFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLN-QGRIEQVGPPDEVYDHPASR  232 (345)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEec-CCeeeeeCCHHHHhcCCCcc
Confidence            999999877 66777666543 459999999999999999999999999 664    4777777766543

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3.8e-38  Score=265.39  Aligned_cols=196  Identities=17%  Similarity=0.256  Sum_probs=154.3

Q ss_pred             cCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH---HHHHHh-------h
Q psy2071          59 ITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM---SVAQRV-------S  128 (302)
Q Consensus        59 ~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~---~~~~~~-------~  128 (302)
                      +.+....+.+++++.|++||+++|+||+|||||||+++|.|+++|++|+|.+.|.+....+..   .+..++       +
T Consensus        16 ~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA   95 (263)
T COG1127          16 KSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA   95 (263)
T ss_pred             eecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence            344555678999999999999999999999999999999999999999999999886544322   222222       3


Q ss_pred             hhhccccccceeeeeeecCCCC---------------------ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         129 EEMDCQLGQEVGYSIRFEDCSS---------------------PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       129 ~~~~~~~~~~v~~~~~~~~~~~---------------------~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      .+-..++.+||+|.++-+....                     .+....+|||||++|++||||++.+|++|++||   |
T Consensus        96 LFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DE---P  172 (263)
T COG1127          96 LFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDE---P  172 (263)
T ss_pred             cccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecC---C
Confidence            3446789999999886543321                     234456799999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeee---ecCcCCccceeecCCCCCCCCCCCccccc
Q psy2071         188 TLATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMN---VPGRTHPVEIFYTPEPPLGAGPWLPQCFT  262 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~---i~g~~~~~~~~~~~~~~~~~~~~l~~~~~  262 (302)
                      |+|+||.. ..+.+++..++ ..+.|++++|||++.+..+||+++++.   +.-.+.|.++...++      +++.+|+.
T Consensus       173 tsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~------P~v~qf~~  246 (263)
T COG1127         173 TSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDD------PWVRQFFN  246 (263)
T ss_pred             CCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCC------HHHHHHhc
Confidence            99999988 88888887654 579999999999999999999999998   333345655555443      55655554


Q ss_pred             C
Q psy2071         263 R  263 (302)
Q Consensus       263 ~  263 (302)
                      +
T Consensus       247 G  247 (263)
T COG1127         247 G  247 (263)
T ss_pred             C
Confidence            3

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.3e-38  Score=272.43  Aligned_cols=181  Identities=17%  Similarity=0.243  Sum_probs=146.0

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh---HHHHHHHh---hh----hhcc
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA---AMSVAQRV---SE----EMDC  133 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~---~~~~~~~~---~~----~~~~  133 (302)
                      ..+++++++.|++|+++||+|.+|+|||||++++.++..|++|++.++|.+.....   .....+++   ++    ....
T Consensus        19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr   98 (339)
T COG1135          19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR   98 (339)
T ss_pred             eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence            44689999999999999999999999999999999999999999999996543222   22222222   22    2346


Q ss_pred             ccccceeeeeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         134 QLGQEVGYSIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       134 ~~~~~v~~~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      ++.+||+|++......                   ..+....+|||||||||+|||||+.+|++|+.||   +|++|||.
T Consensus        99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DE---aTSALDP~  175 (339)
T COG1135          99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDE---ATSALDPE  175 (339)
T ss_pred             hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecC---ccccCChH
Confidence            8999999998665532                   2234556799999999999999999999999999   99999998


Q ss_pred             H-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecCC
Q psy2071         195 M-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTPE  248 (302)
Q Consensus       195 ~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~~  248 (302)
                      . ..+.+++++. ++.|.||+++||.|+.+.++||++++|+ .|+    +.-.++|..|.
T Consensus       176 TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~-~G~lvE~G~v~~vF~~Pk  234 (339)
T COG1135         176 TTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLD-QGRLVEEGTVSEVFANPK  234 (339)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEee-CCEEEEeccHHHhhcCcc
Confidence            8 6677777754 4679999999999999999999999999 554    45556666664

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=3.4e-37  Score=267.18  Aligned_cols=173  Identities=14%  Similarity=0.136  Sum_probs=139.7

Q ss_pred             ChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhh-------ccc
Q psy2071          62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEM-------DCQ  134 (302)
Q Consensus        62 p~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~-------~~~  134 (302)
                      +...++++++++|++|++++|+|||||||||||++|+|+++|.+|.|.++|.+.........++.++..+       ..+
T Consensus        13 ~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~t   92 (258)
T COG1120          13 GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLT   92 (258)
T ss_pred             CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcE
Confidence            3344688999999999999999999999999999999999999999999999988877777776654322       334


Q ss_pred             cccceeeee----eecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071         135 LGQEVGYSI----RFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT  191 (302)
Q Consensus       135 ~~~~v~~~~----~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l  191 (302)
                      +.+.|.+.-    .+...                   ...++.+..||||||||+.||+||+.+|++|+|||   ||+.|
T Consensus        93 V~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDE---PTs~L  169 (258)
T COG1120          93 VYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDE---PTSHL  169 (258)
T ss_pred             EeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCC---Ccccc
Confidence            444443321    01110                   12344567799999999999999999999999999   99999


Q ss_pred             HHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         192 DILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       192 D~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |... ..+.+++++.. +.|.|+++++||++.+.+|||++++|+ .|+.
T Consensus       170 Di~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk-~G~i  217 (258)
T COG1120         170 DIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLK-DGKI  217 (258)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE-CCeE
Confidence            9887 55777777665 568999999999999999999999999 6653

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.8e-37  Score=251.48  Aligned_cols=170  Identities=16%  Similarity=0.178  Sum_probs=138.3

Q ss_pred             hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHH-------HHhhhhhcccc
Q psy2071          63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA-------QRVSEEMDCQL  135 (302)
Q Consensus        63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~  135 (302)
                      ..++.+|++|.++.|++++|+|||||||||+|++|++++.|++|.+.++|.+..+-+. .+.       .....+-.++.
T Consensus        14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~-~vrr~IGVl~~e~glY~RlT~   92 (245)
T COG4555          14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPS-FVRRKIGVLFGERGLYARLTA   92 (245)
T ss_pred             HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChH-HHhhhcceecCCcChhhhhhH
Confidence            4558999999999999999999999999999999999999999999999876432211 111       11122233455


Q ss_pred             ccceeeeeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         136 GQEVGYSIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       136 ~~~v~~~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+++.|.-+++...                   ..++++..+|.||||||+|||||+++|++++|||   |++|+|... 
T Consensus        93 rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDE---P~sGLDi~~~  169 (245)
T COG4555          93 RENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDE---PTSGLDIRTR  169 (245)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcC---CCCCccHHHH
Confidence            66665544333221                   2356677899999999999999999999999999   999999887 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ..+.+++.+.++.|.+++++||+|++++.+||++++++ .|.
T Consensus       170 r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh-~Ge  210 (245)
T COG4555         170 RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLH-KGE  210 (245)
T ss_pred             HHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEe-cCc
Confidence            88999999998889999999999999999999999999 664

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]

Probab=100.00  E-value=3e-34  Score=283.33  Aligned_cols=249  Identities=48%  Similarity=0.743  Sum_probs=212.7

Q ss_pred             CCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH
Q psy2071          42 FTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM  121 (302)
Q Consensus        42 ~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~  121 (302)
                      +.....++++..+...+..||++..+++|...|+++++++|.||+||||||++++++..... .+...|.+++||+++++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-~~~g~I~~tQPRRlAAr  108 (845)
T COG1643          30 MDARSRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-GIAGKIGCTQPRRLAAR  108 (845)
T ss_pred             hhhhhcccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-ccCCeEEecCchHHHHH
Confidence            34444445555667788899999999999999999999999999999999999999876554 45567889999999999


Q ss_pred             HHHHHhhhhhccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHH
Q psy2071         122 SVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEV  201 (302)
Q Consensus       122 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~l  201 (302)
                      +++.+++++++..+++.|||.++|++..+.+|+++++|.|++.|...-+.++..+++||+||+||++.+.|.++++++++
T Consensus       109 svA~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~  188 (845)
T COG1643         109 SVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDL  188 (845)
T ss_pred             HHHHHHHHHhCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcCCccceeecCCCCCCC------------------CCCCccccc
Q psy2071         202 IKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGA------------------GPWLPQCFT  262 (302)
Q Consensus       202 l~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~~~~~~------------------~~~l~~~~~  262 (302)
                      +..++ +.+++||++|.|.+.+.++++.+++++++|+.|||+++|.+++...+                  ++.+ .|++
T Consensus       189 ~~~rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdIL-vFLp  267 (845)
T COG1643         189 LARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSIL-VFLP  267 (845)
T ss_pred             HhhcCCCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEE-EECC
Confidence            88777 69999999999999999999999999999999999999987764322                  2222 4666


Q ss_pred             CchhHHHHhhHHHhHhhccCCCcchhhHHHHHH
Q psy2071         263 RPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAF  295 (302)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~gD~ltll~l~~a~  295 (302)
                      +..+++.....+..   ..-++++.++++|.++
T Consensus       268 G~~EI~~~~~~L~~---~~l~~~~~i~PLy~~L  297 (845)
T COG1643         268 GQREIERTAEWLEK---AELGDDLEILPLYGAL  297 (845)
T ss_pred             cHHHHHHHHHHHHh---ccccCCcEEeeccccC
Confidence            66666655544443   1223567777777654

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-35  Score=258.30  Aligned_cols=179  Identities=20%  Similarity=0.248  Sum_probs=151.0

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----------hHHHHHHHhhhhhcccc
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----------AAMSVAQRVSEEMDCQL  135 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----------~~~~~~~~~~~~~~~~~  135 (302)
                      ..++++.|++|||++|.|-+|||||||++++.+++.|+.|++.+.|.+..+.           ....++|.++..++.++
T Consensus        44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtV  123 (386)
T COG4175          44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTV  123 (386)
T ss_pred             eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhH
Confidence            5788999999999999999999999999999999999999999999875332           23345566677788899


Q ss_pred             ccceeeeeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         136 GQEVGYSIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       136 ~~~v~~~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+|++|.+......                   ..+..+.+|||||+|||.|||||+.+|++|++||   |+++|||+. 
T Consensus       124 l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDE---aFSALDPLIR  200 (386)
T COG4175         124 LENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDE---AFSALDPLIR  200 (386)
T ss_pred             hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecC---chhhcChHHH
Confidence            99999998765443                   2345667799999999999999999999999999   999999988 


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee---ecCcCCccceeecCC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN---VPGRTHPVEIFYTPE  248 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~---i~g~~~~~~~~~~~~  248 (302)
                       ++-.++++...+.++||+++|||++++.++.|||++|+   +...++|.|+...|.
T Consensus       201 ~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PA  257 (386)
T COG4175         201 TEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPA  257 (386)
T ss_pred             HHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCcc
Confidence             44455555566778999999999999999999999999   333458888887764

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2.9e-35  Score=250.41  Aligned_cols=169  Identities=18%  Similarity=0.178  Sum_probs=133.3

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-----------HHHHHhhhhhc
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-----------SVAQRVSEEMD  132 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-----------~~~~~~~~~~~  132 (302)
                      ..+++++++.|++||+++|+|||||||||||+++.|+..|++|.+.+.|.+.......           .+.|.....+.
T Consensus        18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~   97 (226)
T COG1136          18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD   97 (226)
T ss_pred             eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence            3468999999999999999999999999999999999999999999999654332211           12222233445


Q ss_pred             cccccceeeeeeecCCC-------------------Ccc-ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071         133 CQLGQEVGYSIRFEDCS-------------------SPK-TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD  192 (302)
Q Consensus       133 ~~~~~~v~~~~~~~~~~-------------------~~~-~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD  192 (302)
                      .++.+||..++.+....                   ... ..+..|||||+|||+|||||+.+|++|+.||   ||.++|
T Consensus        98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADE---PTgnLD  174 (226)
T COG1136          98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADE---PTGNLD  174 (226)
T ss_pred             CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeC---ccccCC
Confidence            67777777433221111                   112 4567899999999999999999999999999   999999


Q ss_pred             HHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         193 ILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       193 ~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ... ..+.+++.... +.|.|+++||||...+. +|||++.|. .|+
T Consensus       175 ~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~-dG~  219 (226)
T COG1136         175 SKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELK-DGK  219 (226)
T ss_pred             hHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEe-CCe
Confidence            877 77888887764 45899999999987665 999999998 776

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-35  Score=246.18  Aligned_cols=174  Identities=17%  Similarity=0.181  Sum_probs=140.5

Q ss_pred             CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccC-----CCEEEeecCchh--hhHHHHHHHh---h-
Q psy2071          60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSV-----GAKAVACTQPRR--VAAMSVAQRV---S-  128 (302)
Q Consensus        60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~-----G~~~i~~~~~~~--~~~~~~~~~~---~-  128 (302)
                      .+...+++++|+..|+++++++|+||+||||||+|+++..+.....     |++.+.|.+...  +....+..++   + 
T Consensus        16 yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQ   95 (253)
T COG1117          16 YYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQ   95 (253)
T ss_pred             EECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeecc
Confidence            3456778999999999999999999999999999999988766544     788998877543  2233333333   2 


Q ss_pred             --hhhccccccceeeeeeecCCCC-----------------------ccccccccCHHHHHHHhccccCCCCCcEEEEcC
Q psy2071         129 --EEMDCQLGQEVGYSIRFEDCSS-----------------------PKTVLKYMTDGMLLREGMSDPMLENYQVILLDE  183 (302)
Q Consensus       129 --~~~~~~~~~~v~~~~~~~~~~~-----------------------~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE  183 (302)
                        ..+..++++||.|.++.+....                       .+.....|||||+||++|||||+.+|++|+|||
T Consensus        96 kPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDE  175 (253)
T COG1117          96 KPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDE  175 (253)
T ss_pred             CCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecC
Confidence              2345789999999988765432                       011223399999999999999999999999999


Q ss_pred             CCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         184 AHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       184 ~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                         |+++|||.. ..+.+++..+++ +.||++|||+|..+.+++|+.+++. .|+.
T Consensus       176 ---PtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmqQAaRvSD~taFf~-~G~L  226 (253)
T COG1117         176 ---PTSALDPISTLKIEELITELKK-KYTIVIVTHNMQQAARVSDYTAFFY-LGEL  226 (253)
T ss_pred             ---cccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHHHHHHHhHhhhhhc-ccEE
Confidence               999999988 789999988774 7899999999999999999999998 6653

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.2e-36  Score=252.99  Aligned_cols=169  Identities=17%  Similarity=0.185  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh----hHHHHHHHhhh------hhccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV----AAMSVAQRVSE------EMDCQ  134 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~----~~~~~~~~~~~------~~~~~  134 (302)
                      .++++|++.|.+||+++|+|++|||||||.++++|+.+|+.|+|.++|......    ......+.+++      .+..+
T Consensus        21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t  100 (252)
T COG1124          21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT  100 (252)
T ss_pred             hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence            478999999999999999999999999999999999999999999999543211    11111222222      23334


Q ss_pred             cccceeeeeeecCCC------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         135 LGQEVGYSIRFEDCS------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       135 ~~~~v~~~~~~~~~~------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      +++.+...++.+...                  ..++....|||||+||++|||||+.+|++||+||   |+++||... 
T Consensus       101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDE---ptSaLD~siQ  177 (252)
T COG1124         101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDE---PTSALDVSVQ  177 (252)
T ss_pred             HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecC---chhhhcHHHH
Confidence            444444444332111                  2245566799999999999999999999999999   999999877 


Q ss_pred             HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         196 GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       196 ~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ..+.+++... ++.+.|++++|||+..+..+|||++||. .|.
T Consensus       178 a~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~-~G~  219 (252)
T COG1124         178 AQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMD-NGQ  219 (252)
T ss_pred             HHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeee-CCe
Confidence            6777777654 4568999999999999999999999999 664

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.1e-34  Score=236.02  Aligned_cols=175  Identities=17%  Similarity=0.176  Sum_probs=143.3

Q ss_pred             CCCh-hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH---HHH-------HHhh
Q psy2071          60 TLPV-FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM---SVA-------QRVS  128 (302)
Q Consensus        60 ~lp~-~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~---~~~-------~~~~  128 (302)
                      .+|. ..+++++++.|++||++-|+||+|||||||+++|++...|+.|.+.++|.+..++...   .+.       |..-
T Consensus        10 ~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~r   89 (223)
T COG2884          10 AYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR   89 (223)
T ss_pred             hcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecc
Confidence            3443 3379999999999999999999999999999999999999999999999875433211   111       1112


Q ss_pred             hhhccccccceeeeeeecCCCC-------------------ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071         129 EEMDCQLGQEVGYSIRFEDCSS-------------------PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL  189 (302)
Q Consensus       129 ~~~~~~~~~~v~~~~~~~~~~~-------------------~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~  189 (302)
                      .....++++||++.++......                   .+.....||||++||++||||++.+|++||.||   ||.
T Consensus        90 LL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADE---PTG  166 (223)
T COG2884          90 LLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADE---PTG  166 (223)
T ss_pred             ccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecC---CCC
Confidence            2346789999999887654331                   223455699999999999999999999999999   999


Q ss_pred             chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++|+-. ..+.+++...+..|.||+++|||.+.+.++-.++..+. .|+.
T Consensus       167 NLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~-~Grl  215 (223)
T COG2884         167 NLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALE-DGRL  215 (223)
T ss_pred             CCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEe-CCEE
Confidence            999877 77888888888899999999999999999988888888 7764

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=6.6e-35  Score=261.89  Aligned_cols=176  Identities=16%  Similarity=0.145  Sum_probs=137.9

Q ss_pred             cCCC-hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh--hHHHHHHHh----hhhh
Q psy2071          59 ITLP-VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV--AAMSVAQRV----SEEM  131 (302)
Q Consensus        59 ~~lp-~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~--~~~~~~~~~----~~~~  131 (302)
                      +.+. ...+++++++.|++|++++|+||||||||||+++|+|+..|++|++.+.|.++...  .......++    ....
T Consensus        12 k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~   91 (293)
T COG1131          12 KKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYP   91 (293)
T ss_pred             EEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCc
Confidence            3445 35578999999999999999999999999999999999999999999999765431  111111111    1223


Q ss_pred             ccccccceeeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071         132 DCQLGQEVGYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD  192 (302)
Q Consensus       132 ~~~~~~~v~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD  192 (302)
                      ..++.+++.|...+...                   ...++.+..||+|||||++||.||+.+|+++||||   ||+|+|
T Consensus        92 ~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE---Pt~GLD  168 (293)
T COG1131          92 ELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE---PTSGLD  168 (293)
T ss_pred             cccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC---CCcCCC
Confidence            34555554443322211                   11256678899999999999999999999999999   999999


Q ss_pred             HHH-HHHHHHHHHcCCCc-EEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         193 ILM-GVLKEVIKQRADLK-LVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       193 ~~~-~~l~~ll~~~~~~~-~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +.. ..++++++.+.+.+ .||+++||.++++..+||++.+|+ .|+.
T Consensus       169 p~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~-~G~~  215 (293)
T COG1131         169 PESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILN-DGKI  215 (293)
T ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEe-CCEE
Confidence            988 78999999877766 899999999999999999999999 6653

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-34  Score=245.47  Aligned_cols=187  Identities=16%  Similarity=0.109  Sum_probs=145.5

Q ss_pred             hhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH--------HHHHHhh
Q psy2071          57 KRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM--------SVAQRVS  128 (302)
Q Consensus        57 ~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~--------~~~~~~~  128 (302)
                      ..+.+....+++++++.+++|++++|||||||||||++++|+|.++|++|.+.+.|.+.......        .-+|...
T Consensus        10 l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~r   89 (250)
T COG0411          10 LSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITR   89 (250)
T ss_pred             ceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccccc
Confidence            33456677789999999999999999999999999999999999999999999998764332221        1223333


Q ss_pred             hhhccccccceeeeeeec-------------------------------CCCCccccccccCHHHHHHHhccccCCCCCc
Q psy2071         129 EEMDCQLGQEVGYSIRFE-------------------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQ  177 (302)
Q Consensus       129 ~~~~~~~~~~v~~~~~~~-------------------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~  177 (302)
                      .+..+++.+|+.......                               .....++....||+|+++|+.|||||+.+|+
T Consensus        90 lF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~  169 (250)
T COG0411          90 LFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPK  169 (250)
T ss_pred             ccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCC
Confidence            345667777665432100                               0112345567799999999999999999999


Q ss_pred             EEEEcCCCCCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecC
Q psy2071         178 VILLDEAHERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTP  247 (302)
Q Consensus       178 lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~  247 (302)
                      +|+|||   |.+|+.+.. ..+.+++...++ .++||+++.|||+.+..+|||++||+ .|+    +.|.++...|
T Consensus       170 lLLLDE---PaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~-~G~~IAeG~P~eV~~dp  241 (250)
T COG0411         170 LLLLDE---PAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLN-YGEVIAEGTPEEVRNNP  241 (250)
T ss_pred             EEEecC---ccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEecc-CCcCcccCCHHHHhcCH
Confidence            999999   999999776 777788877665 57999999999999999999999999 554    4666665554

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=5.8e-34  Score=230.30  Aligned_cols=165  Identities=16%  Similarity=0.204  Sum_probs=132.2

Q ss_pred             HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC-----chhhhHHHHHHHhhhhhccccccceeeeee
Q psy2071          70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ-----PRRVAAMSVAQRVSEEMDCQLGQEVGYSIR  144 (302)
Q Consensus        70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  144 (302)
                      +..+|+.||+++|+||+|||||||+++|+|+..|.+|.+.|+|.+     |.......+.+.-..+-..++.+|+++.+.
T Consensus        18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~   97 (231)
T COG3840          18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS   97 (231)
T ss_pred             EEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC
Confidence            466889999999999999999999999999999999999999875     323333333333333445678888887653


Q ss_pred             ecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHH
Q psy2071         145 FEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQ  204 (302)
Q Consensus       145 ~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~  204 (302)
                      -...                   ...++....||||||||+++||+|+.+-.+++|||   |++++|+.+ ..+..++.+
T Consensus        98 P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDE---PFsALdP~LR~eMl~Lv~~  174 (231)
T COG3840          98 PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDE---PFSALDPALRAEMLALVSQ  174 (231)
T ss_pred             cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecC---chhhcCHHHHHHHHHHHHH
Confidence            2111                   12345667799999999999999999999999999   999999988 555556554


Q ss_pred             -cCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         205 -RADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       205 -~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+.|++++||..+++..++++++++. .|++
T Consensus       175 l~~E~~~TllmVTH~~~Da~~ia~~~~fl~-~Gri  208 (231)
T COG3840         175 LCDERKMTLLMVTHHPEDAARIADRVVFLD-NGRI  208 (231)
T ss_pred             HHHhhCCEEEEEeCCHHHHHHhhhceEEEe-CCEE
Confidence             45668999999999999999999999999 8875

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.5e-34  Score=248.73  Aligned_cols=170  Identities=18%  Similarity=0.201  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh-hhHHHHHHHh---h-----hhhcccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR-VAAMSVAQRV---S-----EEMDCQL  135 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~-~~~~~~~~~~---~-----~~~~~~~  135 (302)
                      .+++++++.|++|++++|+|+||||||||+++++|+++|++|.+.++|..... .....+.+++   .     +.+..++
T Consensus        18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV   97 (235)
T COG1122          18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTV   97 (235)
T ss_pred             eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcH
Confidence            46789999999999999999999999999999999999999999998876431 2222222222   1     2334566


Q ss_pred             ccceeeeeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         136 GQEVGYSIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       136 ~~~v~~~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+.+.|........                   ..++.+..|||||+||++||.+|+.+|++|||||   ||+++|+.. 
T Consensus        98 ~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDE---Pta~LD~~~~  174 (235)
T COG1122          98 EDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDE---PTAGLDPKGR  174 (235)
T ss_pred             HHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcC---CCCCCCHHHH
Confidence            66777666443322                   1345667799999999999999999999999999   999999988 


Q ss_pred             HHHHHHHHHcCCC-cEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 GVLKEVIKQRADL-KLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 ~~l~~ll~~~~~~-~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ..+.+++.+++.. |.|+|++|||++.+..+||++++|+ .|+.
T Consensus       175 ~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~-~G~i  217 (235)
T COG1122         175 RELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLD-DGKI  217 (235)
T ss_pred             HHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEE-CCEE
Confidence            7888888877655 7999999999999999999999999 6653

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.9e-34  Score=238.71  Aligned_cols=170  Identities=12%  Similarity=0.152  Sum_probs=130.9

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHH------HHhhh----hhcc
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA------QRVSE----EMDC  133 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~------~~~~~----~~~~  133 (302)
                      ..++++|++.|++||+++|+|++||||||||++|.|+..|++|++.++|.++.........      ..+++    ....
T Consensus        17 ~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~   96 (258)
T COG3638          17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRL   96 (258)
T ss_pred             ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCccccc
Confidence            3468999999999999999999999999999999999999999999999876433222111      11122    2223


Q ss_pred             ccccceeeee-----ee----------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071         134 QLGQEVGYSI-----RF----------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE  186 (302)
Q Consensus       134 ~~~~~v~~~~-----~~----------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~  186 (302)
                      ++.+||....     .+                      .......++...|||||+|||+|||||+.+|++|+.||   
T Consensus        97 sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADE---  173 (258)
T COG3638          97 SVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADE---  173 (258)
T ss_pred             HHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCC---
Confidence            4444443221     00                      00111234556799999999999999999999999999   


Q ss_pred             CCcchHHHH-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         187 RTLATDILM-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       187 p~~~lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      |+++|||.. ..+.+++++. .+.|+|+++.-|+++.+.+||||++-|+ .|+
T Consensus       174 PvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~-~G~  225 (258)
T COG3638         174 PVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLK-AGR  225 (258)
T ss_pred             cccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEec-CCc
Confidence            999999988 7777777754 4568999999999999999999999999 776

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.98  E-value=1.3e-33  Score=227.97  Aligned_cols=188  Identities=17%  Similarity=0.160  Sum_probs=147.1

Q ss_pred             hcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch---------------hhh-HH
Q psy2071          58 RITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR---------------RVA-AM  121 (302)
Q Consensus        58 r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~---------------~~~-~~  121 (302)
                      .+.+....+++++++.-++|+++.|||.+||||||+|+||..+..|+.|.|.++|...+               .+. ..
T Consensus        13 HK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~R   92 (256)
T COG4598          13 HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLR   92 (256)
T ss_pred             HhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHH
Confidence            34567778899999999999999999999999999999999999999999999886431               110 01


Q ss_pred             ----HHHHHhhhhhccccccceeeeee-e-------------------cCCCCccccccccCHHHHHHHhccccCCCCCc
Q psy2071         122 ----SVAQRVSEEMDCQLGQEVGYSIR-F-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQ  177 (302)
Q Consensus       122 ----~~~~~~~~~~~~~~~~~v~~~~~-~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~  177 (302)
                          .+.+.+..+..+++.+||-.... .                   ......+.....|||||+||++|||||+.+|+
T Consensus        93 s~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~  172 (256)
T COG4598          93 TRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPE  172 (256)
T ss_pred             HHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCc
Confidence                11222222233455555543221 0                   00112234456799999999999999999999


Q ss_pred             EEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee---ecCcCCccceeecCC
Q psy2071         178 VILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN---VPGRTHPVEIFYTPE  248 (302)
Q Consensus       178 lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~---i~g~~~~~~~~~~~~  248 (302)
                      ++++||   ||+++||.+ ..+.++++++.+.|.|++.+||.|.++.+.+..+++++   ++..+.|.++|-.|.
T Consensus       173 vmLFDE---PTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~nP~  244 (256)
T COG4598         173 VMLFDE---PTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQ  244 (256)
T ss_pred             eEeecC---CcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcCCC
Confidence            999999   999999887 88888888888999999999999999999999999999   666778888887775

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.98  E-value=6.8e-35  Score=263.82  Aligned_cols=174  Identities=16%  Similarity=0.147  Sum_probs=134.1

Q ss_pred             CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--HHHHHHhh----hhhcc
Q psy2071          60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--MSVAQRVS----EEMDC  133 (302)
Q Consensus        60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--~~~~~~~~----~~~~~  133 (302)
                      .++...+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.++.....  ......+.    .....
T Consensus        16 ~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~   95 (306)
T PRK13537         16 RYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDF   95 (306)
T ss_pred             EECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCC
Confidence            3444457899999999999999999999999999999999999999999999876533211  00011111    11223


Q ss_pred             ccccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         134 QLGQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       134 ~~~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      ++.+++.+....                   ......++.+..||+||+||++||+||+.+|++|||||   ||+++|+.
T Consensus        96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDE---Pt~gLD~~  172 (306)
T PRK13537         96 TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE---PTTGLDPQ  172 (306)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeC---CCcCCCHH
Confidence            444444321111                   11112356677899999999999999999999999999   99999998


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      . ..+++++++..+.|.||+++||+++++.++||++++|+ .|+
T Consensus       173 ~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~-~G~  215 (306)
T PRK13537        173 ARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIE-EGR  215 (306)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE-CCE
Confidence            8 78889988876668999999999999999999999998 554

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.98  E-value=4.9e-34  Score=244.28  Aligned_cols=169  Identities=18%  Similarity=0.179  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH----HHHHHhh-hhhccccccce
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM----SVAQRVS-EEMDCQLGQEV  139 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~v  139 (302)
                      .+++++++.+++|++++|+||||||||||+++|+|+++|++|++.+.|.+.......    .+.+... .....++.+++
T Consensus        14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l   93 (205)
T cd03226          14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREEL   93 (205)
T ss_pred             ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHH
Confidence            357889999999999999999999999999999999999999999988654211000    0111100 11123444444


Q ss_pred             eeeeee---------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071         140 GYSIRF---------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK  203 (302)
Q Consensus       140 ~~~~~~---------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~  203 (302)
                      .+....               ......++.+..||+||+||+++|+||+.+|++|||||   |++++|+.. ..+.+++.
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~~LD~~~~~~l~~~l~  170 (205)
T cd03226          94 LLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE---PTSGLDYKNMERVGELIR  170 (205)
T ss_pred             hhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC---CCccCCHHHHHHHHHHHH
Confidence            332111               00112345667899999999999999999999999999   999999887 78888888


Q ss_pred             HcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         204 QRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       204 ~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ...+.+.+++++||+++++..+||++++|+ .|+
T Consensus       171 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~G~  203 (205)
T cd03226         171 ELAAQGKAVIVITHDYEFLAKVCDRVLLLA-NGA  203 (205)
T ss_pred             HHHHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence            765558899999999999999999999998 554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.98  E-value=6.2e-34  Score=245.56  Aligned_cols=168  Identities=15%  Similarity=0.167  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------HHHHHHhhh----hhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------MSVAQRVSE----EMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~~~~~~~~~----~~~~~~  135 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+......      ......+.+    ....++
T Consensus        18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   97 (216)
T TIGR00960        18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTV   97 (216)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccH
Confidence            5788999999999999999999999999999999999999999999875422110      000111111    122344


Q ss_pred             ccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         136 GQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       136 ~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+++.+....                   ......++.+..||+||+||++||+||+.+|++|||||   |++++|+.. 
T Consensus        98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE---Pt~~LD~~~~  174 (216)
T TIGR00960        98 YDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADE---PTGNLDPELS  174 (216)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCcCCHHHH
Confidence            4554432110                   00011244567799999999999999999999999999   999999887 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ..+.+++.+..+.+.|||++|||.+++..+||++++|+ .|+
T Consensus       175 ~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~-~G~  215 (216)
T TIGR00960       175 RDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLS-RGR  215 (216)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEe-CCc
Confidence            77888887765558899999999999999999999997 554

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=3.4e-34  Score=263.72  Aligned_cols=178  Identities=20%  Similarity=0.210  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----hHHHHHHHhhhhhcccccccee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----AAMSVAQRVSEEMDCQLGQEVG  140 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~  140 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+.+|++|++.++|......     ....+.+....++..++.+|+.
T Consensus        19 ~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~   98 (356)
T PRK11650         19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMA   98 (356)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHH
Confidence            57889999999999999999999999999999999999999999998654221     1111222223344567777777


Q ss_pred             eeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH
Q psy2071         141 YSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE  200 (302)
Q Consensus       141 ~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~  200 (302)
                      |..+....                   ...++.+..|||||+||++|||||+.+|++|||||   |++++|... ..+.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDE---P~s~LD~~~r~~l~~  175 (356)
T PRK11650         99 YGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDE---PLSNLDAKLRVQMRL  175 (356)
T ss_pred             hHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHHH
Confidence            66532111                   11244566799999999999999999999999999   999999887 66777


Q ss_pred             HHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         201 VIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       201 ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                      .++... +.+.|+|++|||.+++..+||++++|+ .|+.    .|.+++..|
T Consensus       176 ~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~-~G~i~~~g~~~~~~~~p  226 (356)
T PRK11650        176 EIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMN-GGVAEQIGTPVEVYEKP  226 (356)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe-CCEEEEECCHHHHHhCC
Confidence            776544 458999999999999999999999998 5653    555555444

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.98  E-value=2.7e-34  Score=262.64  Aligned_cols=169  Identities=17%  Similarity=0.192  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHH----------HHHHhhhhhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMS----------VAQRVSEEMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~----------~~~~~~~~~~~~~  135 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+........          +.+........++
T Consensus        20 ~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv   99 (343)
T TIGR02314        20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTV   99 (343)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcH
Confidence            578999999999999999999999999999999999999999999987643221110          1111111223456


Q ss_pred             ccceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         136 GQEVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       136 ~~~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+++.+......                   ....+..+..|||||+||++|||||+.+|++||+||   ||+++|+.. 
T Consensus       100 ~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDE---Pts~LD~~t~  176 (343)
T TIGR02314       100 FGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDE---ATSALDPATT  176 (343)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC---CcccCCHHHH
Confidence            666654332110                   012245567799999999999999999999999999   999999888 


Q ss_pred             HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 ~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ..+.+++++..+ .+.|||++||+++.+.++||++++|+ .|+.
T Consensus       177 ~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~-~G~i  219 (343)
T TIGR02314       177 QSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVIS-NGEL  219 (343)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            778888877644 58999999999999999999999998 5654

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.97  E-value=6.3e-34  Score=257.43  Aligned_cols=169  Identities=18%  Similarity=0.187  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--HHHHHHHhhh----hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--AMSVAQRVSE----EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~v  139 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+.....  .......+.+    ....++.+++
T Consensus         8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l   87 (302)
T TIGR01188         8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENL   87 (302)
T ss_pred             EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHH
Confidence            578999999999999999999999999999999999999999999886542211  0000111111    1223444444


Q ss_pred             eeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         140 GYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       140 ~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                      .+....                   ......++.+..||+||+||++||+||+.+|++|||||   ||+++|+.. ..+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE---Pt~gLD~~~~~~l~  164 (302)
T TIGR01188        88 EMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDE---PTTGLDPRTRRAIW  164 (302)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCcCCCHHHHHHHH
Confidence            322111                   00112345677899999999999999999999999999   999999888 7888


Q ss_pred             HHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         200 EVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       200 ~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++++...+.|.||+++||+++++.++||++++|+ .|+.
T Consensus       165 ~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~-~G~i  202 (302)
T TIGR01188       165 DYIRALKEEGVTILLTTHYMEEADKLCDRIAIID-HGRI  202 (302)
T ss_pred             HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE-CCEE
Confidence            8888776568999999999999999999999998 5553

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=1.6e-33  Score=237.51  Aligned_cols=174  Identities=13%  Similarity=0.113  Sum_probs=142.1

Q ss_pred             HhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhh----hh
Q psy2071          56 RKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSE----EM  131 (302)
Q Consensus        56 ~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~----~~  131 (302)
                      +..+++..+.+.++|++.+++|++.+++|+|||||||.+++|+|++.|++|.|.++|....... .....++..    +.
T Consensus         7 ~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~   85 (300)
T COG4152           7 GVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEI-KNRIGYLPEERGLYP   85 (300)
T ss_pred             cchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhh-hhhcccChhhhccCc
Confidence            3456677888899999999999999999999999999999999999999999999997643211 111112222    22


Q ss_pred             ccccccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071         132 DCQLGQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD  192 (302)
Q Consensus       132 ~~~~~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD  192 (302)
                      .+++.+.+.|..++                   +.......+++.||.|++|++.+..+++++|++|||||   |++|+|
T Consensus        86 k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDE---PFSGLD  162 (300)
T COG4152          86 KMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDE---PFSGLD  162 (300)
T ss_pred             cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecC---CccCCC
Confidence            34455555444332                   22223456788899999999999999999999999999   999999


Q ss_pred             HHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         193 ILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       193 ~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      |+. +++++.+.+.++.|.||+++||.|+.++++||++++|+
T Consensus       163 PVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~  204 (300)
T COG4152         163 PVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLK  204 (300)
T ss_pred             hhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheec
Confidence            999 89999999999999999999999999999999999998

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.1e-34  Score=264.55  Aligned_cols=180  Identities=19%  Similarity=0.262  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----hHHHHHHHhhhhhccccccce
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----AAMSVAQRVSEEMDCQLGQEV  139 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v  139 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|......     ....+.+.....+..++.+|+
T Consensus        20 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi   99 (351)
T PRK11432         20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENV   99 (351)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHH
Confidence            357899999999999999999999999999999999999999999998653221     111222333334456777887


Q ss_pred             eeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         140 GYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       140 ~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                      .|..+....                   ...++.+..|||||+||++|||||+.+|++|||||   |++++|... ..+.
T Consensus       100 ~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDE---P~s~LD~~~r~~l~  176 (351)
T PRK11432        100 GYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDE---PLSNLDANLRRSMR  176 (351)
T ss_pred             HHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC---CcccCCHHHHHHHH
Confidence            765432110                   11245567799999999999999999999999999   999999887 6777


Q ss_pred             HHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecCC
Q psy2071         200 EVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTPE  248 (302)
Q Consensus       200 ~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~~  248 (302)
                      +.++... +.+.|++++|||.+++..+||++++|+ .|+.    .|.+++..|.
T Consensus       177 ~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~-~G~i~~~g~~~~~~~~p~  229 (351)
T PRK11432        177 EKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMN-KGKIMQIGSPQELYRQPA  229 (351)
T ss_pred             HHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCCC
Confidence            7776553 458999999999999999999999998 5543    5656555443

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.97  E-value=2.9e-34  Score=263.89  Aligned_cols=169  Identities=18%  Similarity=0.192  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-----------HHHHHhhhhhccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-----------SVAQRVSEEMDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~  134 (302)
                      +++++++.|++||+++|+|+||||||||+++|+|+++|++|++.++|.+.......           .+.+........+
T Consensus         8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T   87 (363)
T TIGR01186         8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT   87 (363)
T ss_pred             eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence            46889999999999999999999999999999999999999999999764332111           1112222233456


Q ss_pred             cccceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         135 LGQEVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       135 ~~~~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+++.+...+..                   ....++.+..|||||+||++|||||+.+|++|||||   |++++|+..
T Consensus        88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE---P~saLD~~~  164 (363)
T TIGR01186        88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDE---AFSALDPLI  164 (363)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHH
Confidence            6666655432211                   012345567799999999999999999999999999   999999988


Q ss_pred             -HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+++.... +.+.||+++|||++++..+||++++|+ .|+.
T Consensus       165 r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~-~G~i  208 (363)
T TIGR01186       165 RDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMK-AGEI  208 (363)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe-CCEE
Confidence             77777777654 458999999999999999999999998 5543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.97  E-value=5.1e-34  Score=261.06  Aligned_cols=176  Identities=18%  Similarity=0.148  Sum_probs=134.0

Q ss_pred             hcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--HH----HHHHhhhhh
Q psy2071          58 RITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--MS----VAQRVSEEM  131 (302)
Q Consensus        58 r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--~~----~~~~~~~~~  131 (302)
                      .+.++...+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+......  ..    +.+......
T Consensus        48 ~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~  127 (340)
T PRK13536         48 SKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDL  127 (340)
T ss_pred             EEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCC
Confidence            344454557899999999999999999999999999999999999999999999976432110  00    001111112


Q ss_pred             ccccccceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071         132 DCQLGQEVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD  192 (302)
Q Consensus       132 ~~~~~~~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD  192 (302)
                      ..++.+++.+...                   +......++.+..||+||+||++||+||+.+|++|||||   |++++|
T Consensus       128 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDE---Pt~gLD  204 (340)
T PRK13536        128 EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDE---PTTGLD  204 (340)
T ss_pred             CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC---CCCCCC
Confidence            2333443322110                   111112356677899999999999999999999999999   999999


Q ss_pred             HHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         193 ILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       193 ~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +.. ..+.+++.++.+.|.||+++||+++++.++||++++|+ .|+
T Consensus       205 ~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~-~G~  249 (340)
T PRK13536        205 PHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLE-AGR  249 (340)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE-CCE
Confidence            988 78889888776668999999999999999999999998 554

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=6.9e-33  Score=226.44  Aligned_cols=167  Identities=17%  Similarity=0.157  Sum_probs=136.6

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--HHHHHHhhhhhccccccceee
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--MSVAQRVSEEMDCQLGQEVGY  141 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~  141 (302)
                      ..++++++..|.+||.++++||+|||||||+++++|+..|..|.+.+++......++  .-+.+.-+..++.++.+|+.|
T Consensus        18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvaf   97 (259)
T COG4525          18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAF   97 (259)
T ss_pred             hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHH
Confidence            346899999999999999999999999999999999999999999998864322111  112333344567778888888


Q ss_pred             eeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071         142 SIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV  201 (302)
Q Consensus       142 ~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l  201 (302)
                      .++.....                   ..+..+..|||||+||+.|||||+.+|++|+|||   |+.++|... +.+.++
T Consensus        98 gL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDE---PfgAlDa~tRe~mQel  174 (259)
T COG4525          98 GLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDE---PFGALDALTREQMQEL  174 (259)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecC---chhhHHHHHHHHHHHH
Confidence            87654433                   2345667799999999999999999999999999   999999888 667776


Q ss_pred             HH-HcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         202 IK-QRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       202 l~-~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      +- .+...|+.++++|||++++.-+++++++|+
T Consensus       175 Lldlw~~tgk~~lliTH~ieEAlflatrLvvls  207 (259)
T COG4525         175 LLDLWQETGKQVLLITHDIEEALFLATRLVVLS  207 (259)
T ss_pred             HHHHHHHhCCeEEEEeccHHHHHhhhheeEEec
Confidence            65 455668889999999999999999999998

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=8.4e-34  Score=232.60  Aligned_cols=182  Identities=15%  Similarity=0.153  Sum_probs=145.6

Q ss_pred             hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--------HHHHHHHhhhhhccc
Q psy2071          63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--------AMSVAQRVSEEMDCQ  134 (302)
Q Consensus        63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~  134 (302)
                      -..+.+++++.+++||+++|+||||+||||.+.+++|+.+|++|.+.+++.+.....        ..++.|.-+.+...+
T Consensus        16 kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~Lt   95 (243)
T COG1137          16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLT   95 (243)
T ss_pred             CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCc
Confidence            344678999999999999999999999999999999999999999999998754322        223333333345567


Q ss_pred             cccceeeeeeecCCC---------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         135 LGQEVGYSIRFEDCS---------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       135 ~~~~v~~~~~~~~~~---------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      +.+|+...+.+....                     ..+.....||||+++|+.|||||+.+|++++|||   |+++.||
T Consensus        96 V~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDE---PFAGVDP  172 (243)
T COG1137          96 VEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDE---PFAGVDP  172 (243)
T ss_pred             HHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecC---CccCCCc
Confidence            777776555433211                     1123344599999999999999999999999999   9999999


Q ss_pred             HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecCC
Q psy2071         194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTPE  248 (302)
Q Consensus       194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~~  248 (302)
                      .. ..+++++..+++.|+-|+++-|++.+...+|||+++++ .|.    +.|.++..+|.
T Consensus       173 iaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~-~G~vla~G~p~ei~~n~~  231 (243)
T COG1137         173 IAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIIS-DGKVLAEGSPEEIVNNED  231 (243)
T ss_pred             hhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEe-cCeEEecCCHHHHhcChh
Confidence            88 88999999988889999999999999999999999998 654    35655555443

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.97  E-value=3.6e-34  Score=263.34  Aligned_cols=183  Identities=20%  Similarity=0.233  Sum_probs=140.7

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----hHHHHHHHhhhhhcccc
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----AAMSVAQRVSEEMDCQL  135 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~  135 (302)
                      ++...+++++++.+++|++++|+||||||||||+++|+|+.+|++|++.++|......     ....+.+....++..++
T Consensus        14 ~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv   93 (353)
T TIGR03265        14 FGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV   93 (353)
T ss_pred             eCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence            3434457889999999999999999999999999999999999999999998653221     11122233333445677


Q ss_pred             ccceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         136 GQEVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       136 ~~~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+|+.|..+...                   ....++.+..|||||+||++|||||+.+|+++||||   |++++|... 
T Consensus        94 ~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDE---P~s~LD~~~r  170 (353)
T TIGR03265        94 ADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDE---PLSALDARVR  170 (353)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHH
Confidence            777776543211                   012345667799999999999999999999999999   999999877 


Q ss_pred             HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         196 GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       196 ~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                      ..+.+.+++. .+.+.|+|++|||.+++..+||++++|+ .|+.    .|.+++..|
T Consensus       171 ~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~-~G~i~~~g~~~~~~~~p  226 (353)
T TIGR03265       171 EHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMN-HGVIEQVGTPQEIYRHP  226 (353)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCC
Confidence            6777777654 3458999999999999999999999998 6653    455555444

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.97  E-value=5.1e-34  Score=262.79  Aligned_cols=179  Identities=20%  Similarity=0.263  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccC--CCEEEeecCchhhh-----HHHHHHHhhhhhcccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSV--GAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQ  137 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~--G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  137 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|++  |++.++|.......     ...+.+....++..++.+
T Consensus        19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~e   98 (362)
T TIGR03258        19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVED   98 (362)
T ss_pred             EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHH
Confidence            35788999999999999999999999999999999999999  99999886542211     111222223334557777


Q ss_pred             ceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071         138 EVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV  197 (302)
Q Consensus       138 ~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~  197 (302)
                      |+.|..+...                   ....++.+..|||||+||++|||||+.+|++|||||   |++++|+.. ..
T Consensus        99 nl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDE---P~s~LD~~~r~~  175 (362)
T TIGR03258        99 NVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDE---PLSALDANIRAN  175 (362)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---ccccCCHHHHHH
Confidence            7766543211                   012345667799999999999999999999999999   999999887 77


Q ss_pred             HHHHHHHcCCC--cEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         198 LKEVIKQRADL--KLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       198 l~~ll~~~~~~--~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                      +.+.+.+..+.  +.|++++|||.+++..+||++++|+ .|+.    .|.+++..|
T Consensus       176 l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~-~G~i~~~g~~~~~~~~p  230 (362)
T TIGR03258       176 MREEIAALHEELPELTILCVTHDQDDALTLADKAGIMK-DGRLAAHGEPQALYDAP  230 (362)
T ss_pred             HHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCc
Confidence            77777765443  7899999999999999999999998 5553    555665444

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.97  E-value=2.6e-33  Score=240.82  Aligned_cols=167  Identities=17%  Similarity=0.177  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhhh-----hhcccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVSE-----EMDCQLGQ  137 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~  137 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|...........   ..++.+     ....++.+
T Consensus        16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~   95 (211)
T cd03225          16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEE   95 (211)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHH
Confidence            5788999999999999999999999999999999999999999998864321110000   011111     11234444


Q ss_pred             ceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071         138 EVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV  197 (302)
Q Consensus       138 ~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~  197 (302)
                      ++.+...                   +......++.+..||+||+||++||+||+.+|++|||||   |++++|+.. ..
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE---Pt~~LD~~~~~~  172 (211)
T cd03225          96 EVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE---PTAGLDPAGRRE  172 (211)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHHH
Confidence            4332110                   000011245567899999999999999999999999999   999999887 77


Q ss_pred             HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecC
Q psy2071         198 LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG  236 (302)
Q Consensus       198 l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g  236 (302)
                      +.+++....+.+.++|++|||++++..+||++++|+ .|
T Consensus       173 ~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~-~G  210 (211)
T cd03225         173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLE-DG  210 (211)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEe-CC
Confidence            888887765558899999999999999999999997 54

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.97  E-value=5.8e-34  Score=263.39  Aligned_cols=184  Identities=19%  Similarity=0.234  Sum_probs=141.3

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----hHHHHHHHhhhhhcccc
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----AAMSVAQRVSEEMDCQL  135 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~  135 (302)
                      ++...+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|......     ....+.+....++..++
T Consensus        24 ~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv  103 (375)
T PRK09452         24 FDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV  103 (375)
T ss_pred             ECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence            3333457889999999999999999999999999999999999999999998754221     11112233333445677


Q ss_pred             ccceeeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         136 GQEVGYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       136 ~~~v~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+|+.|..+....                   ...++.+..|||||+||++|||||+.+|++|||||   |++++|... 
T Consensus       104 ~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDE---P~s~LD~~~r  180 (375)
T PRK09452        104 FENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE---SLSALDYKLR  180 (375)
T ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCcCCHHHH
Confidence            7777765432110                   11244566799999999999999999999999999   999999887 


Q ss_pred             HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecCC
Q psy2071         196 GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTPE  248 (302)
Q Consensus       196 ~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~~  248 (302)
                      ..+.+.++... +.+.|+|++|||.+++..+||++++|+ .|+.    .|.+++..|.
T Consensus       181 ~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~-~G~i~~~g~~~~i~~~p~  237 (375)
T PRK09452        181 KQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMR-DGRIEQDGTPREIYEEPK  237 (375)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCcc
Confidence            67777777654 458999999999999999999999998 6653    5555555443

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.97  E-value=1.3e-33  Score=243.10  Aligned_cols=168  Identities=18%  Similarity=0.197  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-----HHHHHHhhhhhcccccccee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-----MSVAQRVSEEMDCQLGQEVG  140 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~  140 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+......     ..+.+........++.+++.
T Consensus        15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~   94 (213)
T cd03259          15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIA   94 (213)
T ss_pred             eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHH
Confidence            5789999999999999999999999999999999999999999998865321110     00111111111233344432


Q ss_pred             eeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH
Q psy2071         141 YSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE  200 (302)
Q Consensus       141 ~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~  200 (302)
                      +...                   +......++.+..||+||+||++||+||+.+|++|||||   ||+++|+.. ..+.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE---Pt~~LD~~~~~~l~~  171 (213)
T cd03259          95 FGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE---PLSALDAKLREELRE  171 (213)
T ss_pred             hHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHHHHHH
Confidence            2110                   000111245567799999999999999999999999999   999999887 77888


Q ss_pred             HHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         201 VIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       201 ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ++....+ .+.||+++|||.+++.++||++++|+ .|+
T Consensus       172 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~-~G~  208 (213)
T cd03259         172 ELKELQRELGITTIYVTHDQEEALALADRIAVMN-EGR  208 (213)
T ss_pred             HHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEE-CCE
Confidence            8877544 47899999999999999999999998 665

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.97  E-value=3.7e-33  Score=240.35  Aligned_cols=167  Identities=16%  Similarity=0.181  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------H----HHHHHhhhhhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------M----SVAQRVSEEMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~----~~~~~~~~~~~~~~  135 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+......      .    .+.+........++
T Consensus        17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   96 (214)
T TIGR02673        17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTV   96 (214)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcH
Confidence            5789999999999999999999999999999999999999999998865432110      0    00111111112344


Q ss_pred             ccceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         136 GQEVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       136 ~~~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+++.+...                   +......++.+..||+||+||++||+||+.+|++|||||   |++++|+.. 
T Consensus        97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDE---Pt~~LD~~~~  173 (214)
T TIGR02673        97 YENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADE---PTGNLDPDLS  173 (214)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC---CcccCCHHHH
Confidence            444332210                   000011234567799999999999999999999999999   999999887 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecC
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG  236 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g  236 (302)
                      ..+.++++...+.+.|++++||+++++..+||++++|+ .|
T Consensus       174 ~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~-~G  213 (214)
T TIGR02673       174 ERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILD-DG  213 (214)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEec-CC
Confidence            77888888765557899999999999999999999987 44

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.97  E-value=1.2e-33  Score=259.77  Aligned_cols=179  Identities=19%  Similarity=0.213  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhccccccce
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEV  139 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v  139 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+.....     ...+.+.....+..++.+++
T Consensus        16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni   95 (353)
T PRK10851         16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNI   95 (353)
T ss_pred             EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHH
Confidence            3578899999999999999999999999999999999999999999886542211     11112222233345677777


Q ss_pred             eeeeeec----C-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         140 GYSIRFE----D-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       140 ~~~~~~~----~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .|..+..    .                   ....++.+..|||||+||++|||||+.+|++|||||   |++++|+.. 
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDE---P~s~LD~~~r  172 (353)
T PRK10851         96 AFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDE---PFGALDAQVR  172 (353)
T ss_pred             HhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCccCCHHHH
Confidence            6654320    0                   011244566799999999999999999999999999   999999887 


Q ss_pred             HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         196 GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       196 ~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                      ..+.+++.+.. +.+.|+|++|||.+++..+||++++|+ .|+.    .|.+++..|
T Consensus       173 ~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~-~G~i~~~g~~~~i~~~p  228 (353)
T PRK10851        173 KELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMS-QGNIEQAGTPDQVWREP  228 (353)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCc
Confidence            67777777654 348999999999999999999999998 6653    555555444

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.97  E-value=2.8e-33  Score=244.51  Aligned_cols=169  Identities=16%  Similarity=0.177  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------H----HHHHHhhhhhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------M----SVAQRVSEEMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~----~~~~~~~~~~~~~~  135 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+......      .    .+.+........++
T Consensus        15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   94 (235)
T cd03261          15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTV   94 (235)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcH
Confidence            5788999999999999999999999999999999999999999998865322110      0    01111111122355


Q ss_pred             ccceeeeeee--------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         136 GQEVGYSIRF--------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       136 ~~~v~~~~~~--------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+++.+....                    ......++.+..|||||+||++||+||+.+|++|||||   |++++|+..
T Consensus        95 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDE---Pt~~LD~~~  171 (235)
T cd03261          95 FENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDE---PTAGLDPIA  171 (235)
T ss_pred             HHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecC---CcccCCHHH
Confidence            5554332110                    00011245567799999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.++++...+ .+.||+++|||++++..+||++++|+ .|+.
T Consensus       172 ~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~-~G~i  215 (235)
T cd03261         172 SGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLY-DGKI  215 (235)
T ss_pred             HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEE-CCeE
Confidence             778888876654 47899999999999999999999998 6654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.97  E-value=3.4e-33  Score=241.25  Aligned_cols=167  Identities=17%  Similarity=0.136  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-------HHHHHhh----hhhccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-------SVAQRVS----EEMDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-------~~~~~~~----~~~~~~  134 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+.......       .....+.    .....+
T Consensus        19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   98 (218)
T cd03255          19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLT   98 (218)
T ss_pred             EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCc
Confidence            57889999999999999999999999999999999999999999988654321100       0001111    112234


Q ss_pred             cccceeeeeeec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         135 LGQEVGYSIRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       135 ~~~~v~~~~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+++.+...+.                   .....++.+..||+||+||++||+||+.+|++|||||   |++++|+..
T Consensus        99 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDE---P~~~LD~~~  175 (218)
T cd03255          99 ALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADE---PTGNLDSET  175 (218)
T ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcC---CcccCCHHH
Confidence            444443321110                   0011244567799999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         196 -GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       196 -~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                       ..+.+++.+..+ .+.|||++||+.+++. +||++++|+ .|+
T Consensus       176 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~-~G~  217 (218)
T cd03255         176 GKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELR-DGK  217 (218)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEee-CCc
Confidence             778888887654 5889999999999987 999999997 554

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.97  E-value=2.8e-33  Score=241.01  Aligned_cols=165  Identities=16%  Similarity=0.213  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh----hhHHHHHHHhhhhhccccccceee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR----VAAMSVAQRVSEEMDCQLGQEVGY  141 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~  141 (302)
                      +.+++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.....    ++...........+..++.+++.+
T Consensus        14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~   93 (213)
T cd03235          14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLM   93 (213)
T ss_pred             eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHh
Confidence            5789999999999999999999999999999999999999999998865421    111111100000112344444432


Q ss_pred             eeee-----------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071         142 SIRF-----------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV  197 (302)
Q Consensus       142 ~~~~-----------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~  197 (302)
                      ....                       ......++.+..||+||+||++||+||+.+|++|||||   ||+++|+.. ..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE---Pt~~LD~~~~~~  170 (213)
T cd03235          94 GLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDE---PFAGVDPKTQED  170 (213)
T ss_pred             ccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHH
Confidence            2110                       00001234567799999999999999999999999999   999999887 77


Q ss_pred             HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         198 LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       198 l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      +.+++.+..+.+.|+|++|||.+++.++||++++|+
T Consensus       171 l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~  206 (213)
T cd03235         171 IYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLN  206 (213)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEc
Confidence            888888765568899999999999999999999997

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.97  E-value=2.7e-33  Score=253.38  Aligned_cols=169  Identities=18%  Similarity=0.168  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--H----HHHHHhhhhhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--M----SVAQRVSEEMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~  138 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+......  .    .+.+........++.++
T Consensus        18 ~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~   97 (303)
T TIGR01288        18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVREN   97 (303)
T ss_pred             EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHH
Confidence            36899999999999999999999999999999999999999999998865321110  0    00111111112344444


Q ss_pred             eeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH
Q psy2071         139 VGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL  198 (302)
Q Consensus       139 v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l  198 (302)
                      +.+...                   +......++.+..||+||+||++||+||+.+|++|||||   ||+++|+.. ..+
T Consensus        98 l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE---Pt~gLD~~~~~~l  174 (303)
T TIGR01288        98 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDE---PTTGLDPHARHLI  174 (303)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCcCCCHHHHHHH
Confidence            321100                   000112345667899999999999999999999999999   999999888 778


Q ss_pred             HHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         199 KEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       199 ~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      .+++.+..+.|.||+++||+++++.++||++++|+ .|+
T Consensus       175 ~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~-~G~  212 (303)
T TIGR01288       175 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVLE-SGR  212 (303)
T ss_pred             HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE-CCE
Confidence            88888765568999999999999999999999998 554

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.97  E-value=2.6e-32  Score=225.28  Aligned_cols=144  Identities=16%  Similarity=0.179  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.+.+........           .....++|..+ 
T Consensus        15 vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~-----------~~~~~i~~~~q-   82 (163)
T cd03216          15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRD-----------ARRAGIAMVYQ-   82 (163)
T ss_pred             EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHH-----------HHhcCeEEEEe-
Confidence            578899999999999999999999999999999999999999999886543211100           01123455433 


Q ss_pred             cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071         146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ  224 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~  224 (302)
                                  ||+||+||+++|+|++.+|++|||||   |++++|+.. ..+.+++++..+.+.|++++||+.+.+.+
T Consensus        83 ------------LS~G~~qrl~laral~~~p~illlDE---P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~  147 (163)
T cd03216          83 ------------LSVGERQMVEIARALARNARLLILDE---PTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE  147 (163)
T ss_pred             ------------cCHHHHHHHHHHHHHhcCCCEEEEEC---CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence                        99999999999999999999999999   999999887 78888888765558899999999999999


Q ss_pred             hccCCCeeeecCc
Q psy2071         225 YFDNAPLMNVPGR  237 (302)
Q Consensus       225 ~~d~~~~l~i~g~  237 (302)
                      +||++++|+ .|+
T Consensus       148 ~~d~~~~l~-~g~  159 (163)
T cd03216         148 IADRVTVLR-DGR  159 (163)
T ss_pred             hCCEEEEEE-CCE
Confidence            999999998 665

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.97  E-value=8.1e-33  Score=239.30  Aligned_cols=170  Identities=21%  Similarity=0.214  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--HH----HHHHHhhhhhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--AM----SVAQRVSEEMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~  138 (302)
                      .+++++++.+++|++++|+|+||||||||+++|+|+++|++|++.+.|.......  ..    .+.+........++.++
T Consensus        14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   93 (220)
T cd03265          14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWEN   93 (220)
T ss_pred             EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHH
Confidence            3578999999999999999999999999999999999999999999886432110  00    00111111112233333


Q ss_pred             eeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH
Q psy2071         139 VGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL  198 (302)
Q Consensus       139 v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l  198 (302)
                      +.+...                   +......++.+..||+||+||++||+|++.+|+++||||   |++++|+.. ..+
T Consensus        94 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE---Pt~~LD~~~~~~l  170 (220)
T cd03265          94 LYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE---PTIGLDPQTRAHV  170 (220)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CccCCCHHHHHHH
Confidence            322110                   000011245567799999999999999999999999999   999999887 778


Q ss_pred             HHHHHHcCCC-cEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         199 KEVIKQRADL-KLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       199 ~~ll~~~~~~-~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .+++....+. +.+++++||+.+++..+||++++|+ .|+.
T Consensus       171 ~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~-~G~i  210 (220)
T cd03265         171 WEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIID-HGRI  210 (220)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe-CCEE
Confidence            8888765543 7899999999999999999999998 6654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.2e-33  Score=259.93  Aligned_cols=186  Identities=15%  Similarity=0.183  Sum_probs=140.3

Q ss_pred             cCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----hHHHHHHHhhhhhcc
Q psy2071          59 ITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----AAMSVAQRVSEEMDC  133 (302)
Q Consensus        59 ~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----~~~~~~~~~~~~~~~  133 (302)
                      +.++...+++++++.|++|++++|+||||||||||+++|+|+.+|+.|++.++|......     ....+.+....++..
T Consensus        27 ~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~l  106 (377)
T PRK11607         27 KSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHM  106 (377)
T ss_pred             EEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCC
Confidence            333333457889999999999999999999999999999999999999999988653221     111222333334456


Q ss_pred             ccccceeeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         134 QLGQEVGYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       134 ~~~~~v~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      ++.+|+.|..+....                   ...++.+..|||||+||++|||||+.+|++|||||   |++++|..
T Consensus       107 tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDE---P~s~LD~~  183 (377)
T PRK11607        107 TVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE---PMGALDKK  183 (377)
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHH
Confidence            777777765432110                   11244566799999999999999999999999999   99999987


Q ss_pred             H-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecCC
Q psy2071         195 M-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTPE  248 (302)
Q Consensus       195 ~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~~  248 (302)
                      . ..+.+.+.+. ++.+.|+|++|||.+++..+||++++|+ .|+    +.|.+++..|.
T Consensus       184 ~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~-~G~i~~~g~~~~~~~~p~  242 (377)
T PRK11607        184 LRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMN-RGKFVQIGEPEEIYEHPT  242 (377)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEe-CCEEEEEcCHHHHHhCCc
Confidence            7 5666555543 4458999999999999999999999998 555    35666655443

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.7e-33  Score=259.21  Aligned_cols=179  Identities=17%  Similarity=0.218  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhccccccce
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEV  139 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v  139 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.......     ...+.+........++.+++
T Consensus        17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni   96 (369)
T PRK11000         17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENM   96 (369)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHH
Confidence            3578899999999999999999999999999999999999999999886532211     01111221222344666666


Q ss_pred             eeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         140 GYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       140 ~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                      .+......                   ....++.+..|||||+||++|||||+.+|++|||||   |++++|+.. ..+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDE---Pts~LD~~~~~~l~  173 (369)
T PRK11000         97 SFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE---PLSNLDAALRVQMR  173 (369)
T ss_pred             HhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHH
Confidence            54332110                   011245567799999999999999999999999999   999999887 6777


Q ss_pred             HHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         200 EVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       200 ~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                      +++++.. +.+.|+|++|||.+++..+||++++|+ .|+.    .|.+++..|
T Consensus       174 ~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~-~G~i~~~g~~~~i~~~p  225 (369)
T PRK11000        174 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD-AGRVAQVGKPLELYHYP  225 (369)
T ss_pred             HHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCc
Confidence            7777654 348899999999999999999999998 5543    454544433

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.6e-32  Score=244.95  Aligned_cols=169  Identities=17%  Similarity=0.139  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhh-----hhhcccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVS-----EEMDCQLGQ  137 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~  137 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|...........   ...+.     .....++.+
T Consensus        20 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e   99 (274)
T PRK13647         20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWD   99 (274)
T ss_pred             eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHH
Confidence            6889999999999999999999999999999999999999999999865422111111   11111     112235555


Q ss_pred             ceeeeeeec------------------C-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071         138 EVGYSIRFE------------------D-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV  197 (302)
Q Consensus       138 ~v~~~~~~~------------------~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~  197 (302)
                      ++.+.....                  . ....++.+..||+||+||++||+||+.+|++|||||   |++++|+.. ..
T Consensus       100 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE---Pt~~LD~~~~~~  176 (274)
T PRK13647        100 DVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDE---PMAYLDPRGQET  176 (274)
T ss_pred             HHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC---CCcCCCHHHHHH
Confidence            554322110                  0 011244567799999999999999999999999999   999999887 77


Q ss_pred             HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         198 LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       198 l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +.+++....+.+.||+++|||++.+.++||++++|+ .|+.
T Consensus       177 l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~-~G~i  216 (274)
T PRK13647        177 LMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLK-EGRV  216 (274)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            888888765558999999999999999999999998 6664

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.97  E-value=8.1e-33  Score=232.03  Aligned_cols=160  Identities=17%  Similarity=0.207  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +++++++.+++|++++|+|+||||||||+++|+|+++|+.|++.++|.+............+...+.  ..+.++.    
T Consensus        14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q--~l~~~gl----   87 (180)
T cd03214          14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ--ALELLGL----   87 (180)
T ss_pred             eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH--HHHHcCC----
Confidence            5788999999999999999999999999999999999999999998865432111111111111110  1111111    


Q ss_pred             cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCC-cEEEEEEecCHHHHH
Q psy2071         146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADL-KLVIMSATLDAGKFQ  223 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~-~~~ii~~thd~~~~~  223 (302)
                      .  ...++.+..||+||+||++|||+++.+|+++||||   |+.++|+.. ..+.+++....+. +.|++++||+.+.+.
T Consensus        88 ~--~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE---P~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~  162 (180)
T cd03214          88 A--HLADRPFNELSGGERQRVLLARALAQEPPILLLDE---PTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA  162 (180)
T ss_pred             H--hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            1  12235568899999999999999999999999999   999999877 7788888776544 789999999999999


Q ss_pred             hhccCCCeeeecCc
Q psy2071         224 QYFDNAPLMNVPGR  237 (302)
Q Consensus       224 ~~~d~~~~l~i~g~  237 (302)
                      ++||++++|+ .|+
T Consensus       163 ~~~d~~~~l~-~g~  175 (180)
T cd03214         163 RYADRVILLK-DGR  175 (180)
T ss_pred             HhCCEEEEEE-CCE
Confidence            9999999998 665

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.97  E-value=9.6e-33  Score=240.65  Aligned_cols=170  Identities=16%  Similarity=0.157  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH--------HHHHHhhhhhccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM--------SVAQRVSEEMDCQLG  136 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~  136 (302)
                      .+++++++.+++|++++|+|+||||||||+++|+|+++|++|++.++|.........        .+.+........++.
T Consensus        14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   93 (232)
T cd03218          14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVE   93 (232)
T ss_pred             EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHH
Confidence            357899999999999999999999999999999999999999999988653211100        011111111123444


Q ss_pred             cceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H
Q psy2071         137 QEVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G  196 (302)
Q Consensus       137 ~~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~  196 (302)
                      +++.+...                   +......++.+..||+||+||++||+||+.+|++|||||   |++++|+.. .
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE---Pt~~LD~~~~~  170 (232)
T cd03218          94 ENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE---PFAGVDPIAVQ  170 (232)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC---CcccCCHHHHH
Confidence            44332110                   000011244567799999999999999999999999999   999999887 7


Q ss_pred             HHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         197 VLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       197 ~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .+.++++...+.+.|+|++||+++.+..+||++++|+ .|+.
T Consensus       171 ~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~G~i  211 (232)
T cd03218         171 DIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIY-EGKV  211 (232)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCeE
Confidence            7888887765568899999999999999999999998 6654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.97  E-value=4.9e-33  Score=243.14  Aligned_cols=170  Identities=14%  Similarity=0.101  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH--------HHHHHhhhhhccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM--------SVAQRVSEEMDCQLG  136 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~  136 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.........        .+.+........++.
T Consensus        14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~   93 (236)
T cd03219          14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVL   93 (236)
T ss_pred             EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHH
Confidence            357899999999999999999999999999999999999999999988654321110        011111111223444


Q ss_pred             cceeeeee-----------------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         137 QEVGYSIR-----------------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       137 ~~v~~~~~-----------------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      +++.+...                             +......++.+..||+||+||+++|+||+.+|++|||||   |
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE---P  170 (236)
T cd03219          94 ENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDE---P  170 (236)
T ss_pred             HHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---C
Confidence            44332110                             000011244566799999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |+++|+.. ..+.+++.+..+.+.|+|++|||.+++..+||++++|+ .|+.
T Consensus       171 t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~-~G~i  221 (236)
T cd03219         171 AAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLD-QGRV  221 (236)
T ss_pred             cccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEe-CCEE
Confidence            99999887 77888887765567899999999999999999999998 6653

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.97  E-value=1.1e-32  Score=256.30  Aligned_cols=170  Identities=21%  Similarity=0.224  Sum_probs=131.3

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH-------Hhhhhhccccc
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ-------RVSEEMDCQLG  136 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~  136 (302)
                      ..+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.............       .....+..++.
T Consensus        16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~   95 (402)
T PRK09536         16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVR   95 (402)
T ss_pred             EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHH
Confidence            34678999999999999999999999999999999999999999999997654322111111       11112334555


Q ss_pred             cceeeee-----eec------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         137 QEVGYSI-----RFE------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       137 ~~v~~~~-----~~~------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      +++.+..     .+.                  .....++.+..||+||+||++|||||+.+|++|||||   ||+++|+
T Consensus        96 e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDE---PtsgLD~  172 (402)
T PRK09536         96 QVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDE---PTASLDI  172 (402)
T ss_pred             HHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC---CcccCCH
Confidence            5543321     111                  0011245567799999999999999999999999999   9999998


Q ss_pred             HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      .. ..+.++++++.+.+.||+++|||++++.++||++++|+ .|+
T Consensus       173 ~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~-~G~  216 (402)
T PRK09536        173 NHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLA-DGR  216 (402)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE-CCE
Confidence            87 67888888766568899999999999999999999998 554

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.97  E-value=5.5e-32  Score=225.57  Aligned_cols=155  Identities=19%  Similarity=0.228  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +++++++.+.+|++++|+|+||||||||+++|+|+++|++|++.++|....... .            .....++|..+.
T Consensus        15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~------------~~~~~i~~~~q~   81 (173)
T cd03230          15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-E------------EVKRRIGYLPEE   81 (173)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-H------------hhhccEEEEecC
Confidence            578899999999999999999999999999999999999999999886543211 0            011234444432


Q ss_pred             cCCCCccccccc--cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHH
Q psy2071         146 EDCSSPKTVLKY--MTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKF  222 (302)
Q Consensus       146 ~~~~~~~~~~~~--lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~  222 (302)
                      .......+...+  ||+||+||++||+||+.+|+++||||   |++++|... ..+.+++++..+.+.+++++||+.+++
T Consensus        82 ~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDE---Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~  158 (173)
T cd03230          82 PSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDE---PTSGLDPESRREFWELLRELKKEGKTILLSSHILEEA  158 (173)
T ss_pred             CccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeC---CccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Confidence            221111222222  99999999999999999999999999   999999887 788888887655578999999999999


Q ss_pred             HhhccCCCeeeecCc
Q psy2071         223 QQYFDNAPLMNVPGR  237 (302)
Q Consensus       223 ~~~~d~~~~l~i~g~  237 (302)
                      ..+||++++|+ .|+
T Consensus       159 ~~~~d~i~~l~-~g~  172 (173)
T cd03230         159 ERLCDRVAILN-NGR  172 (173)
T ss_pred             HHhCCEEEEEe-CCC
Confidence            99999999997 554

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.97  E-value=1.6e-32  Score=240.82  Aligned_cols=170  Identities=12%  Similarity=0.103  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------HHHHHHhhh----hhccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------MSVAQRVSE----EMDCQ  134 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~~~~~~~~~----~~~~~  134 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+......      ......+.+    ....+
T Consensus        16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   95 (243)
T TIGR02315        16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLT   95 (243)
T ss_pred             ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccccc
Confidence            35789999999999999999999999999999999999999999998865432110      000111111    12234


Q ss_pred             cccceeeeee---------------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         135 LGQEVGYSIR---------------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       135 ~~~~v~~~~~---------------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      +.+++.+...                           +......++.+..||+||+||++||+||+.+|++|||||   |
T Consensus        96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE---P  172 (243)
T TIGR02315        96 VLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADE---P  172 (243)
T ss_pred             HHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---C
Confidence            5555432210                           000001234556799999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++++|+.. ..+.+++.+.. +.+.|+|++||+.+.+.++||++++|+ .|+.
T Consensus       173 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~-~G~i  224 (243)
T TIGR02315       173 IASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLK-AGEI  224 (243)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEE-CCEE
Confidence            99999887 77888887654 347899999999999999999999998 6653

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.97  E-value=2.3e-32  Score=228.95  Aligned_cols=155  Identities=17%  Similarity=0.219  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--HHHHHHHhhhhhccccccceeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--AMSVAQRVSEEMDCQLGQEVGYSI  143 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~  143 (302)
                      +.+++++.+++|++++|+|+||||||||+++|+|+++|++|++.+.|.+.....  ...            ....++|..
T Consensus        15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~------------~~~~i~~~~   82 (178)
T cd03229          15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPP------------LRRRIGMVF   82 (178)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHH------------HhhcEEEEe
Confidence            578899999999999999999999999999999999999999999886543211  000            011233333


Q ss_pred             eecCCCCcccc---ccc-cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCC-cEEEEEEec
Q psy2071         144 RFEDCSSPKTV---LKY-MTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADL-KLVIMSATL  217 (302)
Q Consensus       144 ~~~~~~~~~~~---~~~-lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~-~~~ii~~th  217 (302)
                      +........+.   +.. ||+||+||+++|+||+.+|+++||||   |++++|+.. ..+.+++.+..+. +.|++++||
T Consensus        83 q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDE---P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH  159 (178)
T cd03229          83 QDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDE---PTSALDPITRREVRALLKSLQAQLGITVVLVTH  159 (178)
T ss_pred             cCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeC---CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            22111111111   111 99999999999999999999999999   999999887 7888888876554 789999999


Q ss_pred             CHHHHHhhccCCCeeeecC
Q psy2071         218 DAGKFQQYFDNAPLMNVPG  236 (302)
Q Consensus       218 d~~~~~~~~d~~~~l~i~g  236 (302)
                      +.+++..+||++++|+ .|
T Consensus       160 ~~~~~~~~~d~i~~l~-~g  177 (178)
T cd03229         160 DLDEAARLADRVVVLR-DG  177 (178)
T ss_pred             CHHHHHHhcCEEEEEe-CC
Confidence            9999999999999987 44

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.97  E-value=4.8e-32  Score=225.94  Aligned_cols=154  Identities=15%  Similarity=0.200  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +.+++++.+++|++++|+||||||||||+++|+|+++|++|++.++|.+..........            ..++|..+.
T Consensus        17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~------------~~i~~~~q~   84 (173)
T cd03246          17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELG------------DHVGYLPQD   84 (173)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHH------------hheEEECCC
Confidence            57888999999999999999999999999999999999999999988654322111111            123333221


Q ss_pred             cCCCCccccccc-cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071         146 EDCSSPKTVLKY-MTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQ  223 (302)
Q Consensus       146 ~~~~~~~~~~~~-lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~  223 (302)
                      .... ..+...+ ||+||+||++||+||+.+|+++||||   |+.++|+.. ..+.+++....+.+.|++++||+.+.+ 
T Consensus        85 ~~~~-~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDE---Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-  159 (173)
T cd03246          85 DELF-SGSIAENILSGGQRQRLGLARALYGNPRILVLDE---PNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL-  159 (173)
T ss_pred             Cccc-cCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEEC---CccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-
Confidence            1111 1122222 99999999999999999999999999   999999887 778888877655688999999999988 


Q ss_pred             hhccCCCeeeecCc
Q psy2071         224 QYFDNAPLMNVPGR  237 (302)
Q Consensus       224 ~~~d~~~~l~i~g~  237 (302)
                      .+||++++|+ .|+
T Consensus       160 ~~~d~v~~l~-~G~  172 (173)
T cd03246         160 ASADRILVLE-DGR  172 (173)
T ss_pred             HhCCEEEEEE-CCC
Confidence            5899999998 664

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.97  E-value=4.2e-32  Score=228.10  Aligned_cols=157  Identities=15%  Similarity=0.193  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +.+++++.+++|++++|+|+||||||||+++|+|+++|++|++.++|.+.........           ....++|..+.
T Consensus        15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~-----------~~~~i~~~~q~   83 (182)
T cd03215          15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA-----------IRAGIAYVPED   83 (182)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHH-----------HhCCeEEecCC
Confidence            5789999999999999999999999999999999999999999999865432210000           00112222211


Q ss_pred             c-------CCCCcccc-c-cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEE
Q psy2071         146 E-------DCSSPKTV-L-KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSA  215 (302)
Q Consensus       146 ~-------~~~~~~~~-~-~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~  215 (302)
                      .       .....+.. . ..||+||+||++||+|++.+|++|||||   |++++|+.. ..+.+++....+.+.|++++
T Consensus        84 ~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDE---P~~~LD~~~~~~l~~~l~~~~~~~~tiii~  160 (182)
T cd03215          84 RKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDE---PTRGVDVGAKAEIYRLIRELADAGKAVLLI  160 (182)
T ss_pred             cccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECC---CCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            0       00000000 0 1199999999999999999999999999   999999887 77888888765557899999


Q ss_pred             ecCHHHHHhhccCCCeeeecCc
Q psy2071         216 TLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       216 thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ||+.+++.++||++++|+ .|+
T Consensus       161 sh~~~~~~~~~d~v~~l~-~G~  181 (182)
T cd03215         161 SSELDELLGLCDRILVMY-EGR  181 (182)
T ss_pred             eCCHHHHHHhCCEEEEec-CCc
Confidence            999999999999999997 554

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.97  E-value=1e-32  Score=238.25  Aligned_cols=169  Identities=19%  Similarity=0.188  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--HHHHHHhhh----hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--MSVAQRVSE----EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~v  139 (302)
                      +.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+......  ......+.+    ....++.+++
T Consensus        20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l   99 (218)
T cd03266          20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENL   99 (218)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHH
Confidence            5789999999999999999999999999999999999999999998865432110  000011111    1123444444


Q ss_pred             eeeeeec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         140 GYSIRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       140 ~~~~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                      .+.....                   .....++.+..||+||+||++||+|++.+|++|||||   |++++|+.. ..+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE---Pt~~LD~~~~~~l~  176 (218)
T cd03266         100 EYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDE---PTTGLDVMATRALR  176 (218)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcC---CCcCCCHHHHHHHH
Confidence            3221100                   0011234566799999999999999999999999999   999999887 7788


Q ss_pred             HHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         200 EVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       200 ~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++....+.+.|+|++||+.+++..+||++++|+ .|+.
T Consensus       177 ~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~-~G~i  214 (218)
T cd03266         177 EFIRQLRALGKCILFSTHIMQEVERLCDRVVVLH-RGRV  214 (218)
T ss_pred             HHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence            8888765558899999999999999999999998 6653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.97  E-value=1.3e-32  Score=236.97  Aligned_cols=168  Identities=14%  Similarity=0.125  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh------HHHHHHHhh----hhhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA------AMSVAQRVS----EEMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~------~~~~~~~~~----~~~~~~~  135 (302)
                      +.+++++.+++|++++|+|+||||||||+++|+|+++|++|++.+.|.......      .......+.    .....++
T Consensus        16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~   95 (214)
T cd03292          16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNV   95 (214)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcH
Confidence            578899999999999999999999999999999999999999999886532211      000011111    1112344


Q ss_pred             ccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         136 GQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       136 ~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+++.+....                   ......++.+..||+||+||++||+||+.+|+++||||   |++++|+.. 
T Consensus        96 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~~LD~~~~  172 (214)
T cd03292          96 YENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADE---PTGNLDPDTT  172 (214)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeC---CCCcCCHHHH
Confidence            4444322110                   00011234567799999999999999999999999999   999999887 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ..+.++++...+.+.|+|++||+.+.+..+||++++|+ .|+
T Consensus       173 ~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~-~G~  213 (214)
T cd03292         173 WEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALE-RGK  213 (214)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEe-CCc
Confidence            77888887765558899999999999999999999997 554

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.97  E-value=1.3e-32  Score=238.14  Aligned_cols=169  Identities=14%  Similarity=0.124  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--------HHHHHHhhhhhcccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--------MSVAQRVSEEMDCQLGQ  137 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  137 (302)
                      +.+++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+......        ..+.+........++.+
T Consensus        15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~   94 (222)
T cd03224          15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEE   94 (222)
T ss_pred             EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHH
Confidence            5788999999999999999999999999999999999999999998865322111        01111111112234444


Q ss_pred             ceeeeeeec-----------------C-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH
Q psy2071         138 EVGYSIRFE-----------------D-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL  198 (302)
Q Consensus       138 ~v~~~~~~~-----------------~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l  198 (302)
                      ++.+.....                 . ....++.+..||+||+||++||+||+.+|++|||||   |++++|+.. ..+
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~~LD~~~~~~l  171 (222)
T cd03224          95 NLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE---PSEGLAPKIVEEI  171 (222)
T ss_pred             HHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECC---CcccCCHHHHHHH
Confidence            443321110                 0 011244566799999999999999999999999999   999999887 778


Q ss_pred             HHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         199 KEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       199 ~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .+++.+..+.+.|++++||+++.+..+||++++|+ .|+.
T Consensus       172 ~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i  210 (222)
T cd03224         172 FEAIRELRDEGVTILLVEQNARFALEIADRAYVLE-RGRV  210 (222)
T ss_pred             HHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEee-CCeE
Confidence            88887765567899999999999999999999998 6653

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.97  E-value=2e-32  Score=235.58  Aligned_cols=168  Identities=18%  Similarity=0.199  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh--hhHHHHHH---Hhhh----hhccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR--VAAMSVAQ---RVSE----EMDCQLG  136 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~--~~~~~~~~---~~~~----~~~~~~~  136 (302)
                      +.+++++.+++|++++|+||||||||||+++|+|+++|++|++.+.|.+...  ........   ++.+    ....++.
T Consensus        15 ~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~   94 (213)
T cd03262          15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVL   94 (213)
T ss_pred             eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHH
Confidence            5788999999999999999999999999999999999999999998865421  01000111   1111    1123444


Q ss_pred             cceeeeee--------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         137 QEVGYSIR--------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       137 ~~v~~~~~--------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      +++.+...                    +......++.+..||+||+||+++|+|++.+|++|||||   |++++|+.. 
T Consensus        95 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---P~~~LD~~~~  171 (213)
T cd03262          95 ENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDE---PTSALDPELV  171 (213)
T ss_pred             HHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeC---CccCCCHHHH
Confidence            44433210                    000011245567799999999999999999999999999   999999887 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ..+.+++.+..+.+.|+|++||+.+.+.++||++++|+ .|+
T Consensus       172 ~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~-~g~  212 (213)
T cd03262         172 GEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMD-DGR  212 (213)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEe-CCc
Confidence            77888888765557899999999999999999999998 654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.97  E-value=9.1e-33  Score=237.77  Aligned_cols=168  Identities=17%  Similarity=0.188  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhcccccccee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEVG  140 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~  140 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+.....     ...+.+........++.+++.
T Consensus        15 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~   94 (213)
T cd03301          15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIA   94 (213)
T ss_pred             eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHH
Confidence            578999999999999999999999999999999999999999999886532110     001111111112234444443


Q ss_pred             eeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH
Q psy2071         141 YSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE  200 (302)
Q Consensus       141 ~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~  200 (302)
                      +....                   ......+..+..||+||+||+++|+||+.+|+++||||   |++++|+.. ..+.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE---Pt~~LD~~~~~~l~~  171 (213)
T cd03301          95 FGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE---PLSNLDAKLRVQMRA  171 (213)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHHHHHH
Confidence            32110                   00011244567799999999999999999999999999   999999887 77888


Q ss_pred             HHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         201 VIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       201 ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ++....+ .+.|++++|||++++..+||++.+|+ .|+
T Consensus       172 ~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~-~g~  208 (213)
T cd03301         172 ELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMN-DGQ  208 (213)
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEE-CCE
Confidence            8876543 47899999999999999999999997 665

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.97  E-value=8.1e-33  Score=237.24  Aligned_cols=169  Identities=18%  Similarity=0.181  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-HHHHHHhhh----hhccccccce
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-MSVAQRVSE----EMDCQLGQEV  139 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~v  139 (302)
                      .+++++++.+++|++++|+|+||||||||+++|+|+++|++|++.++|.+...... ......+.+    ....++.+++
T Consensus        14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l   93 (208)
T cd03268          14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENL   93 (208)
T ss_pred             EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHH
Confidence            36788999999999999999999999999999999999999999998875432100 000011111    1123444444


Q ss_pred             eeeeee---------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071         140 GYSIRF---------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK  203 (302)
Q Consensus       140 ~~~~~~---------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~  203 (302)
                      .+....               ......++.+..||+||+||+++|+|++.+|++|||||   |++++|+.. ..+.+++.
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---Pt~~LD~~~~~~l~~~l~  170 (208)
T cd03268          94 RLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDE---PTNGLDPDGIKELRELIL  170 (208)
T ss_pred             HHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC---CcccCCHHHHHHHHHHHH
Confidence            322110               00011234567799999999999999999999999999   999999887 77888887


Q ss_pred             HcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         204 QRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       204 ~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ...+.+.|+|++|||.+++..+||++++|+ .|+
T Consensus       171 ~~~~~~~tii~~tH~~~~~~~~~d~v~~l~-~g~  203 (208)
T cd03268         171 SLRDQGITVLISSHLLSEIQKVADRIGIIN-KGK  203 (208)
T ss_pred             HHHHCCCEEEEEcCCHHHHHHhcCEEEEEE-CCE
Confidence            665567899999999999999999999998 665

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.9e-32  Score=245.99  Aligned_cols=169  Identities=15%  Similarity=0.154  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----hHHHHHHHhhh-----hhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----AAMSVAQRVSE-----EMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----~~~~~~~~~~~-----~~~~~~  135 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+....     .......++.+     .+..++
T Consensus        22 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv  101 (287)
T PRK13637         22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETI  101 (287)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccH
Confidence            68899999999999999999999999999999999999999999988654221     00000111111     112344


Q ss_pred             ccceeeeee------------------ecCC---CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         136 GQEVGYSIR------------------FEDC---SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       136 ~~~v~~~~~------------------~~~~---~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      .+++.+...                  ....   ...++.+..||+||+||++||+||+.+|++|||||   |++++|+.
T Consensus       102 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDE---Pt~gLD~~  178 (287)
T PRK13637        102 EKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDE---PTAGLDPK  178 (287)
T ss_pred             HHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC---CccCCCHH
Confidence            444433210                  0111   12356678899999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         195 M-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       195 ~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      . ..+.+++....+ .+.||+++|||++++..+||++++|+ .|+.
T Consensus       179 ~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~-~G~i  223 (287)
T PRK13637        179 GRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMN-KGKC  223 (287)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            7 788888887654 48999999999999999999999998 6654

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=4e-32  Score=234.46  Aligned_cols=171  Identities=19%  Similarity=0.214  Sum_probs=134.6

Q ss_pred             hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeee
Q psy2071          63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYS  142 (302)
Q Consensus        63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  142 (302)
                      ...++++|++.|++||+++|+|+|||||||+-++++|+++|++|+|.+.|.+...........++...+     +.||..
T Consensus        25 ~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL-----~~Vgl~   99 (268)
T COG4608          25 YVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELL-----EKVGLP   99 (268)
T ss_pred             ceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHH-----HHhCCC
Confidence            355789999999999999999999999999999999999999999999998765443222222222211     223311


Q ss_pred             eeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc-CCCcEEEEEEecCHH
Q psy2071         143 IRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR-ADLKLVIMSATLDAG  220 (302)
Q Consensus       143 ~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~~  220 (302)
                           .....+...+|||||+||++|||||+.+|+++++||   |++++|... ..+.+++... .+.+.+.+++|||+.
T Consensus       100 -----~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DE---pvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~  171 (268)
T COG4608         100 -----EEFLYRYPHELSGGQRQRIGIARALALNPKLIVADE---PVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS  171 (268)
T ss_pred             -----HHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecC---chhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence                 122345678899999999999999999999999999   999999777 6777777754 456999999999999


Q ss_pred             HHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         221 KFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       221 ~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                      .+..+||++++|. .|+.    ...++|..|
T Consensus       172 vv~~isdri~VMy-~G~iVE~g~~~~~~~~p  201 (268)
T COG4608         172 VVRYISDRIAVMY-LGKIVEIGPTEEVFSNP  201 (268)
T ss_pred             hhhhhcccEEEEe-cCceeEecCHHHHhhCC
Confidence            9999999999999 5543    344455533

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.97  E-value=2.3e-32  Score=239.61  Aligned_cols=169  Identities=12%  Similarity=0.136  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh---HHHH---HHHhhh----hhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA---AMSV---AQRVSE----EMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~---~~~~---~~~~~~----~~~~~~  135 (302)
                      +++++++.+++|++++|+||||||||||+++|+|+++|++|++.++|.+.....   ....   ...+.+    ....++
T Consensus        16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   95 (241)
T cd03256          16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSV   95 (241)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcH
Confidence            578899999999999999999999999999999999999999999886543211   0000   111111    122344


Q ss_pred             ccceeeeee---------------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         136 GQEVGYSIR---------------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       136 ~~~v~~~~~---------------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      .+++.+...                           +......++.+..||+||+||++||+||+.+|++|||||   |+
T Consensus        96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---Pt  172 (241)
T cd03256          96 LENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE---PV  172 (241)
T ss_pred             HHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---cc
Confidence            444432110                           000001234556799999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         189 LATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++|+.. ..+.+++....+ .+.|||++|||++.+..+||++++|+ .|+.
T Consensus       173 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~-~G~i  223 (241)
T cd03256         173 ASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLK-DGRI  223 (241)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            9999887 778888876643 47899999999999999999999998 6653

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.97  E-value=9.9e-33  Score=243.07  Aligned_cols=182  Identities=19%  Similarity=0.227  Sum_probs=133.3

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-c----cCCCEEEeecCchhhhHH-------------HHHH
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-K----SVGAKAVACTQPRRVAAM-------------SVAQ  125 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-~----~~G~~~i~~~~~~~~~~~-------------~~~~  125 (302)
                      ..+.+++++.|++||+++|+|+|||||||+.+.|+|+++ +    .+|++.+.|.+.......             .+..
T Consensus        18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p   97 (316)
T COG0444          18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP   97 (316)
T ss_pred             EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence            356899999999999999999999999999999999997 3    458899998753322211             1111


Q ss_pred             HhhhhhccccccceeeeeeecC--------------------CCCc----cccccccCHHHHHHHhccccCCCCCcEEEE
Q psy2071         126 RVSEEMDCQLGQEVGYSIRFED--------------------CSSP----KTVLKYMTDGMLLREGMSDPMLENYQVILL  181 (302)
Q Consensus       126 ~~~~~~~~~~~~~v~~~~~~~~--------------------~~~~----~~~~~~lS~G~~qr~~la~al~~~p~lliL  181 (302)
                      .-+..+..+++..+...++.+.                    ....    +....+|||||+||++||.||+.+|++||.
T Consensus        98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIA  177 (316)
T COG0444          98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIA  177 (316)
T ss_pred             hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEe
Confidence            1112222333333332222111                    1111    233455999999999999999999999999


Q ss_pred             cCCCCCCcchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecCCC
Q psy2071         182 DEAHERTLATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTPEP  249 (302)
Q Consensus       182 DE~~~p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~~~  249 (302)
                      ||   ||.+||... ..+.++++++. +.|.+++++|||+..+.++||+|+||. .|+    +...++|+.|.+
T Consensus       178 DE---PTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMY-aG~iVE~g~~~~i~~~P~H  247 (316)
T COG0444         178 DE---PTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMY-AGRIVEEGPVEEIFKNPKH  247 (316)
T ss_pred             CC---CcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEE-CcEEEEeCCHHHHhcCCCC
Confidence            99   999999877 67777777554 579999999999999999999999999 554    345566666654

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.97  E-value=1.4e-32  Score=239.77  Aligned_cols=169  Identities=17%  Similarity=0.172  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------HHHHHHhhh----hhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------MSVAQRVSE----EMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~~~~~~~~~----~~~~~~  135 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+......      ......+.+    ....++
T Consensus        20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~   99 (233)
T cd03258          20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTV   99 (233)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcH
Confidence            5788999999999999999999999999999999999999999998875422110      000111111    112344


Q ss_pred             ccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         136 GQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       136 ~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+++.+....                   ......++.+..||+||+||++||+||+.+|+++||||   |++++|+.. 
T Consensus       100 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDE---P~~~LD~~~~  176 (233)
T cd03258         100 FENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDE---ATSALDPETT  176 (233)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecC---CCCcCCHHHH
Confidence            4444322110                   00011234567799999999999999999999999999   999999887 


Q ss_pred             HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 ~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ..+.+++....+ .+.|||++||+.+.+..+||++++|+ .|+.
T Consensus       177 ~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~-~G~i  219 (233)
T cd03258         177 QSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVME-KGEV  219 (233)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            778888876654 47899999999999999999999998 6654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=9.7e-33  Score=253.45  Aligned_cols=169  Identities=17%  Similarity=0.193  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHH---HHH---Hhhh----hhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMS---VAQ---RVSE----EMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~---~~~---~~~~----~~~~~~  135 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+........   ...   .+.+    ....++
T Consensus        20 il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv   99 (343)
T PRK11153         20 ALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTV   99 (343)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcH
Confidence            578899999999999999999999999999999999999999999987643211100   011   1111    122355


Q ss_pred             ccceeeeeeec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         136 GQEVGYSIRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       136 ~~~v~~~~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+++.+.....                   .....++.+..||+||+||++||+||+.+|++|||||   ||+++|+.. 
T Consensus       100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDE---Pts~LD~~~~  176 (343)
T PRK11153        100 FDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDE---ATSALDPATT  176 (343)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHH
Confidence            55554321110                   0012245567799999999999999999999999999   999999887 


Q ss_pred             HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 ~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ..+.+++.+..+ .+.|+|++||+++++.++||++++|+ .|+.
T Consensus       177 ~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~-~G~i  219 (343)
T PRK11153        177 RSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVID-AGRL  219 (343)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            778888876643 48899999999999999999999998 5653

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.8e-32  Score=246.46  Aligned_cols=169  Identities=15%  Similarity=0.144  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh------------------------hhHH
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR------------------------VAAM  121 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~------------------------~~~~  121 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+...                        ....
T Consensus        22 ~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (305)
T PRK13651         22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIK  101 (305)
T ss_pred             ceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHH
Confidence            5789999999999999999999999999999999999999999997643210                        0000


Q ss_pred             HHH---HHhhh-----hhccccccceeeeeee------------------cCC--CCccccccccCHHHHHHHhccccCC
Q psy2071         122 SVA---QRVSE-----EMDCQLGQEVGYSIRF------------------EDC--SSPKTVLKYMTDGMLLREGMSDPML  173 (302)
Q Consensus       122 ~~~---~~~~~-----~~~~~~~~~v~~~~~~------------------~~~--~~~~~~~~~lS~G~~qr~~la~al~  173 (302)
                      ...   .++.+     .+..++.+++.+....                  ...  ...++.+..||+||+||++||++|+
T Consensus       102 ~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~  181 (305)
T PRK13651        102 EIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILA  181 (305)
T ss_pred             HHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHH
Confidence            111   11111     1223555555433210                  011  1234566779999999999999999


Q ss_pred             CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         174 ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       174 ~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .+|++|||||   ||+++|+.. ..+.+++....+.|.|||++|||++.+.++||++++|+ .|+.
T Consensus       182 ~~P~lLlLDE---Pt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~-~G~i  243 (305)
T PRK13651        182 MEPDFLVFDE---PTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFK-DGKI  243 (305)
T ss_pred             hCCCEEEEeC---CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEE-CCEE
Confidence            9999999999   999999887 77888888766668999999999999999999999998 6653

>PRK10908 cell division protein FtsE; Provisional

Probab=99.97  E-value=2.2e-32  Score=236.84  Aligned_cols=168  Identities=17%  Similarity=0.165  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------HHHHHHhhh----hhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------MSVAQRVSE----EMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~~~~~~~~~----~~~~~~  135 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+......      ......+.+    .+..++
T Consensus        17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   96 (222)
T PRK10908         17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTV   96 (222)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccH
Confidence            5788999999999999999999999999999999999999999998865432110      000111111    122344


Q ss_pred             ccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         136 GQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       136 ~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+++.+....                   ......++.+..||+||+||++||+|++.+|++|||||   |++++|+.. 
T Consensus        97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~~LD~~~~  173 (222)
T PRK10908         97 YDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADE---PTGNLDDALS  173 (222)
T ss_pred             HHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC---CCCcCCHHHH
Confidence            4444332110                   00011234567799999999999999999999999999   999999877 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ..+.+++....+.+.+++++||+++++..+||++++|+ .|+
T Consensus       174 ~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~  214 (222)
T PRK10908        174 EGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLS-DGH  214 (222)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence            77778887665557899999999999999999999998 554

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.97  E-value=2e-32  Score=235.12  Aligned_cols=169  Identities=16%  Similarity=0.167  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh---hHHHHHHHhhhhhccccccceeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV---AAMSVAQRVSEEMDCQLGQEVGYS  142 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~  142 (302)
                      +.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|......   ....+.+........++.+++.+.
T Consensus        15 ~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~   94 (210)
T cd03269          15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYL   94 (210)
T ss_pred             EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHH
Confidence            56889999999999999999999999999999999999999999988654210   000001110111122333333221


Q ss_pred             ee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHH
Q psy2071         143 IR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVI  202 (302)
Q Consensus       143 ~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll  202 (302)
                      ..                   +......++.+..||+||+||++||++|+.+|++|||||   |++++|+.. ..+.+++
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDE---P~~~LD~~~~~~~~~~l  171 (210)
T cd03269          95 AQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE---PFSGLDPVNVELLKDVI  171 (210)
T ss_pred             HHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCcCCCHHHHHHHHHHH
Confidence            10                   000011234567799999999999999999999999999   999999887 7788888


Q ss_pred             HHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         203 KQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       203 ~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +...+.+.||+++||+.+.+.++||++++|+ .|+.
T Consensus       172 ~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~g~i  206 (210)
T cd03269         172 RELARAGKTVILSTHQMELVEELCDRVLLLN-KGRA  206 (210)
T ss_pred             HHHHHCCCEEEEECCCHHHHHHhhhEEEEEe-CCEE
Confidence            7765557899999999999999999999998 6653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.97  E-value=2e-32  Score=257.37  Aligned_cols=171  Identities=18%  Similarity=0.204  Sum_probs=133.2

Q ss_pred             hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc--h---------hhhHHHHHHHhhhhh
Q psy2071          63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP--R---------RVAAMSVAQRVSEEM  131 (302)
Q Consensus        63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~--~---------~~~~~~~~~~~~~~~  131 (302)
                      ...+.++|++.+.+||+++|+|+|||||||+.++|+|+.+|++|.+.+.|.+.  .         ++..+++.+..+..+
T Consensus       303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnP  382 (539)
T COG1123         303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNP  382 (539)
T ss_pred             ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCc
Confidence            45678999999999999999999999999999999999999999999998651  1         011111122223334


Q ss_pred             ccccccceeeeeeecCCC---------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071         132 DCQLGQEVGYSIRFEDCS---------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA  190 (302)
Q Consensus       132 ~~~~~~~v~~~~~~~~~~---------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~  190 (302)
                      ..++++.+...+.++...                     ..++....|||||+||++|||||+.+|++||+||   |+++
T Consensus       383 r~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DE---p~Sa  459 (539)
T COG1123         383 RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDE---PVSA  459 (539)
T ss_pred             cccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecC---Cccc
Confidence            455555555544332211                     1244566799999999999999999999999999   9999


Q ss_pred             hHHHH-HHHHHHHHH-cCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         191 TDILM-GVLKEVIKQ-RADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       191 lD~~~-~~l~~ll~~-~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +|+.. ..+.+++.+ +.+.|.|++++|||+..+..+||||++|+ .|+
T Consensus       460 LDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~-~G~  507 (539)
T COG1123         460 LDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMY-DGR  507 (539)
T ss_pred             cCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEE-CCe
Confidence            99887 666677665 45679999999999999999999999999 554

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.97  E-value=2.3e-32  Score=243.38  Aligned_cols=174  Identities=17%  Similarity=0.163  Sum_probs=130.2

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-----------HHHHHhhh
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-----------SVAQRVSE  129 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-----------~~~~~~~~  129 (302)
                      +....+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.........           .+.+....
T Consensus        34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~  113 (269)
T cd03294          34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL  113 (269)
T ss_pred             cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence            3334457999999999999999999999999999999999999999999988653221100           00111111


Q ss_pred             hhccccccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071         130 EMDCQLGQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA  190 (302)
Q Consensus       130 ~~~~~~~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~  190 (302)
                      ....++.+++.+....                   ......++.+..||+||+||++||+||+.+|++|||||   |+++
T Consensus       114 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDE---Pt~~  190 (269)
T cd03294         114 LPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDE---AFSA  190 (269)
T ss_pred             CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CCcc
Confidence            1223444444332110                   00011245567799999999999999999999999999   9999


Q ss_pred             hHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         191 TDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       191 lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +|+.. ..+.+++.... +.|.|||++||+++++..+||++++|+ .|+.
T Consensus       191 LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~-~G~i  239 (269)
T cd03294         191 LDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMK-DGRL  239 (269)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence            99887 77888887654 347899999999999999999999998 6653

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.97  E-value=1.2e-32  Score=248.93  Aligned_cols=169  Identities=15%  Similarity=0.177  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--HHHHHHh----hhhhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--MSVAQRV----SEEMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~  138 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+......  ......+    ......++.++
T Consensus        16 ~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~   95 (301)
T TIGR03522        16 NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREY   95 (301)
T ss_pred             EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHH
Confidence            36789999999999999999999999999999999999999999999865432110  0001111    11122344444


Q ss_pred             eeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH
Q psy2071         139 VGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL  198 (302)
Q Consensus       139 v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l  198 (302)
                      +.+...                   +......++.+..||+||+||+++|+||+.+|++|||||   |++++|+.. ..+
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDE---Pt~gLD~~~~~~l  172 (301)
T TIGR03522        96 LQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDE---PTTGLDPNQLVEI  172 (301)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHHHH
Confidence            432111                   111112355677899999999999999999999999999   999999888 788


Q ss_pred             HHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         199 KEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       199 ~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++++...+ +.||+++||+++++.++||++++|+ .|+.
T Consensus       173 ~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~-~G~i  210 (301)
T TIGR03522       173 RNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIIN-KGKI  210 (301)
T ss_pred             HHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEE-CCEE
Confidence            888887765 6899999999999999999999998 5543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3.4e-32  Score=244.39  Aligned_cols=169  Identities=16%  Similarity=0.169  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-------hHHHHHHHhhh-----hhcc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-------AAMSVAQRVSE-----EMDC  133 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-------~~~~~~~~~~~-----~~~~  133 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+....       .......++.+     ....
T Consensus        22 ~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~  101 (287)
T PRK13641         22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFEN  101 (287)
T ss_pred             ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccc
Confidence            57899999999999999999999999999999999999999999988654210       00000011111     1123


Q ss_pred             ccccceeeeee------------------ecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         134 QLGQEVGYSIR------------------FEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       134 ~~~~~v~~~~~------------------~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      ++.+++.+...                  ....  ...++.+..||+||+||++||+||+.+|++|||||   |++++|+
T Consensus       102 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDE---Pt~gLD~  178 (287)
T PRK13641        102 TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDE---PAAGLDP  178 (287)
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC---CCCCCCH
Confidence            44444432110                  0011  12345677899999999999999999999999999   9999998


Q ss_pred             HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .. ..+.+++....+.+.||+++|||++.+..+||++++|+ .|+.
T Consensus       179 ~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~-~G~i  223 (287)
T PRK13641        179 EGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLE-HGKL  223 (287)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            87 77888888776568999999999999999999999998 6653

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.97  E-value=2.9e-32  Score=237.38  Aligned_cols=167  Identities=20%  Similarity=0.199  Sum_probs=124.5

Q ss_pred             HHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--HHHHHHhhhhhccccccceeeeee-
Q psy2071          68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--MSVAQRVSEEMDCQLGQEVGYSIR-  144 (302)
Q Consensus        68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~-  144 (302)
                      +++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+......  ..+.+........++.+++.+... 
T Consensus         2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~   81 (230)
T TIGR01184         2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR   81 (230)
T ss_pred             CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence            46788999999999999999999999999999999999999998865322110  011111111112334444332110 


Q ss_pred             --------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071         145 --------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK  203 (302)
Q Consensus       145 --------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~  203 (302)
                                          +......++.+..||+||+||++||++|+.+|++|||||   |++++|+.. ..+.+++.
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE---Pt~gLD~~~~~~l~~~l~  158 (230)
T TIGR01184        82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDE---PFGALDALTRGNLQEELM  158 (230)
T ss_pred             cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC---CCcCCCHHHHHHHHHHHH
Confidence                                000011245567799999999999999999999999999   999999887 77888887


Q ss_pred             HcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         204 QRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       204 ~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +..+ .+.|||++||+++++.++||++++|+ .|+.
T Consensus       159 ~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~-~G~i  193 (230)
T TIGR01184       159 QIWEEHRVTVLMVTHDVDEALLLSDRVVMLT-NGPA  193 (230)
T ss_pred             HHHHhcCCEEEEEeCCHHHHHHhcCEEEEEe-CCcE
Confidence            6543 47899999999999999999999998 6654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.97  E-value=2.8e-32  Score=238.83  Aligned_cols=169  Identities=20%  Similarity=0.176  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhcccccccee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEVG  140 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~  140 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+.....     ...+.+........++.+++.
T Consensus        17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~   96 (239)
T cd03296          17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVA   96 (239)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHh
Confidence            578999999999999999999999999999999999999999999886432111     000111111111234444443


Q ss_pred             eeeeec-----------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H
Q psy2071         141 YSIRFE-----------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G  196 (302)
Q Consensus       141 ~~~~~~-----------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~  196 (302)
                      +.....                       .....++.+..||+||+||++||+||+.+|++|||||   |++++|+.. .
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE---P~~~LD~~~~~  173 (239)
T cd03296          97 FGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE---PFGALDAKVRK  173 (239)
T ss_pred             hhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHH
Confidence            321100                       0011234556799999999999999999999999999   999999887 7


Q ss_pred             HHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         197 VLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       197 ~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .+.+++....+ .+.|||++||+.+.+..+||++++|+ .|+.
T Consensus       174 ~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~-~G~i  215 (239)
T cd03296         174 ELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMN-KGRI  215 (239)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCeE
Confidence            78888877654 37899999999999999999999998 6654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3.2e-32  Score=244.59  Aligned_cols=169  Identities=15%  Similarity=0.117  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh----hhHHHH---HHHhhh-----hhcc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR----VAAMSV---AQRVSE-----EMDC  133 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~----~~~~~~---~~~~~~-----~~~~  133 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+...    ......   ...+++     .+..
T Consensus        21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~  100 (288)
T PRK13643         21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEE  100 (288)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccc
Confidence            5789999999999999999999999999999999999999999999865421    000001   111111     1123


Q ss_pred             ccccceeeeeee------------------cCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         134 QLGQEVGYSIRF------------------EDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       134 ~~~~~v~~~~~~------------------~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      ++.+++.+....                  ...  ...++.+..||+||+||++||++|+.+|++|||||   |++++|+
T Consensus       101 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDE---Pt~gLD~  177 (288)
T PRK13643        101 TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDE---PTAGLDP  177 (288)
T ss_pred             hHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC---CccCCCH
Confidence            444444332110                  011  12245667899999999999999999999999999   9999998


Q ss_pred             HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .. ..+.+++..+++.+.||+++|||++++..+||++++|+ .|+.
T Consensus       178 ~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~-~G~i  222 (288)
T PRK13643        178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLE-KGHI  222 (288)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence            87 77888888765568999999999999999999999998 6654

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.97  E-value=1.4e-32  Score=250.88  Aligned_cols=170  Identities=16%  Similarity=0.163  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH---HH---HHHhh------hhhc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM---SV---AQRVS------EEMD  132 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~---~~---~~~~~------~~~~  132 (302)
                      .+++++++.|++||+++|+|+||||||||+++|+|+++|++|++.+.|.+.......   ..   ...+.      ..+.
T Consensus        35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~  114 (331)
T PRK15079         35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPR  114 (331)
T ss_pred             EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCC
Confidence            357899999999999999999999999999999999999999999998764321110   00   11111      1223


Q ss_pred             cccccceeeeeeec--------------------CC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071         133 CQLGQEVGYSIRFE--------------------DC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA  190 (302)
Q Consensus       133 ~~~~~~v~~~~~~~--------------------~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~  190 (302)
                      .++.+++.+.+...                    ..  ...++....|||||+||++||+||+.+|++||+||   ||++
T Consensus       115 ~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDE---Pts~  191 (331)
T PRK15079        115 MTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDE---PVSA  191 (331)
T ss_pred             CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CCcc
Confidence            45555543321100                    00  01245567799999999999999999999999999   9999


Q ss_pred             hHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         191 TDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       191 lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +|+.. ..+.+++....+ .+.|++++|||++.+..+||++++|+ .|+.
T Consensus       192 LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~-~G~i  240 (331)
T PRK15079        192 LDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY-LGHA  240 (331)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            99887 777788776544 48999999999999999999999998 5543

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.97  E-value=2.9e-32  Score=240.84  Aligned_cols=170  Identities=16%  Similarity=0.170  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--HHHHHHHhhhhhccccccceeee
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--AMSVAQRVSEEMDCQLGQEVGYS  142 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~  142 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.+.......  ...+.+........++.+++.+.
T Consensus        26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~  105 (257)
T PRK11247         26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLG  105 (257)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhc
Confidence            3578999999999999999999999999999999999999999988765432110  00111111111123444554432


Q ss_pred             ee-------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc-CC
Q psy2071         143 IR-------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR-AD  207 (302)
Q Consensus       143 ~~-------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~-~~  207 (302)
                      ..             +......+..+..||+||+||++||++|+.+|++|||||   |++++|+.. ..+.+++.+. ++
T Consensus       106 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDE---Pt~~LD~~~~~~l~~~L~~~~~~  182 (257)
T PRK11247        106 LKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDE---PLGALDALTRIEMQDLIESLWQQ  182 (257)
T ss_pred             ccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCCCCHHHHHHHHHHHHHHHHH
Confidence            11             000112245567899999999999999999999999999   999999887 7788888765 34


Q ss_pred             CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         208 LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       208 ~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .+.|||++|||++.+..+||++++|+ .|+.
T Consensus       183 ~~~tviivsHd~~~~~~~~d~i~~l~-~G~i  212 (257)
T PRK11247        183 HGFTVLLVTHDVSEAVAMADRVLLIE-EGKI  212 (257)
T ss_pred             cCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            57899999999999999999999998 6654

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.97  E-value=2.8e-32  Score=235.88  Aligned_cols=168  Identities=17%  Similarity=0.149  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch----hhhHHHHHHHhhhhhccccccceee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR----RVAAMSVAQRVSEEMDCQLGQEVGY  141 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~  141 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+..    .++.+..  ........++.+++.+
T Consensus        19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q--~~~~~~~~tv~e~l~~   96 (220)
T cd03293          19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ--QDALLPWLTVLDNVAL   96 (220)
T ss_pred             EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec--ccccccCCCHHHHHHH
Confidence            578899999999999999999999999999999999999999999875432    1111111  1001111233333322


Q ss_pred             eee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071         142 SIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV  201 (302)
Q Consensus       142 ~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l  201 (302)
                      ...                   +......++.+..||+||+||++||+||+.+|++|||||   |++++|+.. ..+.++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE---Pt~~LD~~~~~~~~~~  173 (220)
T cd03293          97 GLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDE---PFSALDALTREQLQEE  173 (220)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECC---CCCCCCHHHHHHHHHH
Confidence            110                   000111245567899999999999999999999999999   999999888 778888


Q ss_pred             HHHcC-CCcEEEEEEecCHHHHHhhccCCCeeee-cCcC
Q psy2071         202 IKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNV-PGRT  238 (302)
Q Consensus       202 l~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i-~g~~  238 (302)
                      +.+.. +.+.||+++||+++++..+||++++|+- .|+.
T Consensus       174 l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i  212 (220)
T cd03293         174 LLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRI  212 (220)
T ss_pred             HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEE
Confidence            87653 4478999999999999999999999973 3543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.97  E-value=3.9e-32  Score=236.53  Aligned_cols=169  Identities=13%  Similarity=0.082  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--------HHHHHHhhhhhcccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--------MSVAQRVSEEMDCQLGQ  137 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  137 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+......        ..+.+........++.+
T Consensus        15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   94 (230)
T TIGR03410        15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEE   94 (230)
T ss_pred             EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHH
Confidence            5789999999999999999999999999999999999999999998865321110        01111111112234444


Q ss_pred             ceeeeeeecC-----------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         138 EVGYSIRFED-----------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       138 ~v~~~~~~~~-----------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                      ++.+......                 ....++.+..||+||+||++||++|+.+|+++||||   |++++|+.. ..+.
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE---Pt~~LD~~~~~~l~  171 (230)
T TIGR03410        95 NLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE---PTEGIQPSIIKDIG  171 (230)
T ss_pred             HHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC---CcccCCHHHHHHHH
Confidence            4432211000                 011244566799999999999999999999999999   999999887 7788


Q ss_pred             HHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         200 EVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       200 ~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++.+..+ .+.|++++||+++++..+||++++++ .|+.
T Consensus       172 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~-~g~i  210 (230)
T TIGR03410       172 RVIRRLRAEGGMAILLVEQYLDFARELADRYYVME-RGRV  210 (230)
T ss_pred             HHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            88887654 47899999999999999999999998 6653

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.97  E-value=6.2e-32  Score=232.27  Aligned_cols=166  Identities=17%  Similarity=0.214  Sum_probs=126.2

Q ss_pred             HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-----HHHHHHhhhhhccccccceeeee
Q psy2071          69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-----MSVAQRVSEEMDCQLGQEVGYSI  143 (302)
Q Consensus        69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~  143 (302)
                      ++++.|.+|++++|+||||||||||+++|+|+++|++|++.+.|.+......     ..+.+........++.+++.+..
T Consensus        16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~   95 (211)
T cd03298          16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL   95 (211)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence            7899999999999999999999999999999999999999998865422110     01111111122335555554332


Q ss_pred             eec------------------C-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071         144 RFE------------------D-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK  203 (302)
Q Consensus       144 ~~~------------------~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~  203 (302)
                      ...                  . ....++.+..||+||+||++||+||+.+|++|||||   |++++|+.. ..+.+++.
T Consensus        96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDE---P~~~LD~~~~~~l~~~l~  172 (211)
T cd03298          96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDE---PFAALDPALRAEMLDLVL  172 (211)
T ss_pred             ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHHHHHHHHH
Confidence            110                  0 001234556799999999999999999999999999   999999887 77888887


Q ss_pred             HcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         204 QRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       204 ~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +.. +.+.|+|++||+++++.++||++++|+ .|+.
T Consensus       173 ~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~G~i  207 (211)
T cd03298         173 DLHAETKMTVLMVTHQPEDAKRLAQRVVFLD-NGRI  207 (211)
T ss_pred             HHHHhcCCEEEEEecCHHHHHhhhCEEEEEE-CCEE
Confidence            664 347899999999999999999999998 6653

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.97  E-value=3.5e-32  Score=239.74  Aligned_cols=170  Identities=18%  Similarity=0.136  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh--------hHHHHH---HHhh----h
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV--------AAMSVA---QRVS----E  129 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~--------~~~~~~---~~~~----~  129 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|......        ......   ..+.    .
T Consensus        17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~   96 (250)
T PRK11264         17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNL   96 (250)
T ss_pred             eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCccc
Confidence            357899999999999999999999999999999999999999999887643210        000001   1111    1


Q ss_pred             hhccccccceeeeee--------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071         130 EMDCQLGQEVGYSIR--------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL  189 (302)
Q Consensus       130 ~~~~~~~~~v~~~~~--------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~  189 (302)
                      ....++.+++.+...                    +......++.+..||+||+||++||+||+.+|++|||||   |++
T Consensus        97 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDE---Pt~  173 (250)
T PRK11264         97 FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDE---PTS  173 (250)
T ss_pred             CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeC---CCc
Confidence            112344444432100                    000011245567799999999999999999999999999   999


Q ss_pred             chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++|+.. ..+.+++....+.+.++|++||+.+.+.++||++++|+ .|+.
T Consensus       174 ~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~-~G~i  222 (250)
T PRK11264        174 ALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD-QGRI  222 (250)
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence            999887 77888887765558899999999999999999999998 6653

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.97  E-value=4e-32  Score=234.90  Aligned_cols=168  Identities=16%  Similarity=0.183  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--HHHHHHHhhh----hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--AMSVAQRVSE----EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~v  139 (302)
                      +++++++.+++|++++|+||||||||||+++|+|+++|++|++.++|.......  .......+.+    ....++.+++
T Consensus        17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l   96 (220)
T cd03263          17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHL   96 (220)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHH
Confidence            578999999999999999999999999999999999999999999886532110  0000011111    1122333333


Q ss_pred             eeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         140 GYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       140 ~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                      .+...                   +......++.+..||+||+||++||+||+.+|++|||||   |++++|+.. ..+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---P~~~LD~~~~~~l~  173 (220)
T cd03263          97 RFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE---PTSGLDPASRRAIW  173 (220)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC---CCCCCCHHHHHHHH
Confidence            32110                   000011244567799999999999999999999999999   999999887 7788


Q ss_pred             HHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         200 EVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       200 ~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++....+ +.|+|++||+++.+.++||++++|+ .|+.
T Consensus       174 ~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~-~g~i  210 (220)
T cd03263         174 DLILEVRK-GRSIILTTHSMDEAEALCDRIAIMS-DGKL  210 (220)
T ss_pred             HHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEE-CCEE
Confidence            88887655 4899999999999999999999998 6653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.97  E-value=4.8e-32  Score=232.94  Aligned_cols=166  Identities=14%  Similarity=0.201  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--HHHHHHHhhh----hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--AMSVAQRVSE----EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~v  139 (302)
                      +.+++++.+++| +++|+||||||||||+++|+|+++|++|++.+.|.+.....  .......+.+    ....++.+++
T Consensus        15 ~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l   93 (211)
T cd03264          15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFL   93 (211)
T ss_pred             EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHH
Confidence            578899999999 99999999999999999999999999999999886543211  0000011111    1123444444


Q ss_pred             eeeeeec------------------C-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         140 GYSIRFE------------------D-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       140 ~~~~~~~------------------~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                      .+...+.                  . ....++.+..||+||+||++||+||+.+|++|||||   |++++|+.. ..+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---Pt~~LD~~~~~~l~  170 (211)
T cd03264          94 DYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE---PTAGLDPEERIRFR  170 (211)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHHHHH
Confidence            3321100                  0 011245667799999999999999999999999999   999999887 7888


Q ss_pred             HHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         200 EVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       200 ~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ++++...+ +.|++++|||.+.+.++||++++|+ .|+
T Consensus       171 ~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~-~g~  206 (211)
T cd03264         171 NLLSELGE-DRIVILSTHIVEDVESLCNQVAVLN-KGK  206 (211)
T ss_pred             HHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEE-CCE
Confidence            88887665 4899999999999999999999998 664

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=2.6e-31  Score=227.42  Aligned_cols=170  Identities=18%  Similarity=0.236  Sum_probs=131.2

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHH-------HHhhhhhccccc
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA-------QRVSEEMDCQLG  136 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~  136 (302)
                      ..+.+||++.|++|++++++|+||+||||+|+++.|++.|++|.+.++|..|.+.......       ++...++.....
T Consensus        37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~  116 (325)
T COG4586          37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL  116 (325)
T ss_pred             hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence            3478999999999999999999999999999999999999999999999988653211111       111111111111


Q ss_pred             ccee-----eee-------------ee-cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H
Q psy2071         137 QEVG-----YSI-------------RF-EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G  196 (302)
Q Consensus       137 ~~v~-----~~~-------------~~-~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~  196 (302)
                      +.+.     |.+             .. +.....+.++..||.|||.|+.||.+|+++|++|+|||   ||.++|... .
T Consensus       117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDE---pTvgLDV~aq~  193 (325)
T COG4586         117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDE---PTVGLDVNAQA  193 (325)
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecC---CccCcchhHHH
Confidence            1111     111             00 01112356778899999999999999999999999999   999999888 7


Q ss_pred             HHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         197 VLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       197 ~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      .+++.+++.. +.+.||+.+||+++.+..+|++|.+|+ .|+
T Consensus       194 ~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~-~Gq  234 (325)
T COG4586         194 NIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLID-QGQ  234 (325)
T ss_pred             HHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEee-CCc
Confidence            8999988765 458999999999999999999999999 554

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.5e-32  Score=250.62  Aligned_cols=175  Identities=14%  Similarity=0.126  Sum_probs=131.8

Q ss_pred             HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----------hHHHHHHHhhhhhcccccc
Q psy2071          69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----------AAMSVAQRVSEEMDCQLGQ  137 (302)
Q Consensus        69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~  137 (302)
                      ++++.|++|++++|+||||||||||+++|+|+++|++|.+.+.|......           ....+.+........++.+
T Consensus        16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e   95 (352)
T PRK11144         16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG   95 (352)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence            68999999999999999999999999999999999999999988643210           0001112222223446666


Q ss_pred             ceeeeeee-------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071         138 EVGYSIRF-------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK  203 (302)
Q Consensus       138 ~v~~~~~~-------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~  203 (302)
                      ++.+....             ......++.+..|||||+||++|||||+.+|++|||||   |++++|+.. ..+.++++
T Consensus        96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDE---Pts~LD~~~~~~l~~~L~  172 (352)
T PRK11144         96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDE---PLASLDLPRKRELLPYLE  172 (352)
T ss_pred             HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC---CcccCCHHHHHHHHHHHH
Confidence            66543211             00112345667899999999999999999999999999   999999887 77777777


Q ss_pred             HcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         204 QRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       204 ~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                      ...+ .+.|+|++|||++++..+||++++|+ .|+.    .|.+++..|
T Consensus       173 ~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~-~G~i~~~g~~~~i~~~p  220 (352)
T PRK11144        173 RLAREINIPILYVSHSLDEILRLADRVVVLE-QGKVKAFGPLEEVWASS  220 (352)
T ss_pred             HHHHhcCCeEEEEecCHHHHHHhCCEEEEEe-CCEEEEecCHHHHHhCc
Confidence            6543 47899999999999999999999998 5553    444554444

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.97  E-value=1.7e-32  Score=253.31  Aligned_cols=174  Identities=17%  Similarity=0.175  Sum_probs=132.0

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeec----Cchhhh-----------HHHHHH
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT----QPRRVA-----------AMSVAQ  125 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~----~~~~~~-----------~~~~~~  125 (302)
                      +.....++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.    +.....           ...+.+
T Consensus        34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ  113 (382)
T TIGR03415        34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ  113 (382)
T ss_pred             hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEEC
Confidence            44444678999999999999999999999999999999999999999999884    221110           001111


Q ss_pred             HhhhhhccccccceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071         126 RVSEEMDCQLGQEVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE  186 (302)
Q Consensus       126 ~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~  186 (302)
                      ........++.+++.+...+..                   ....+..+..|||||+||++|||||+.+|++|||||   
T Consensus       114 ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDE---  190 (382)
T TIGR03415       114 KFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDE---  190 (382)
T ss_pred             CCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC---
Confidence            1222233566666655432111                   012244566799999999999999999999999999   


Q ss_pred             CCcchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         187 RTLATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       187 p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |++++|+.. ..+.+++.... +.+.|++++|||++++.++||++++|+ .|+.
T Consensus       191 Pts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~-~G~i  243 (382)
T TIGR03415       191 PFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIME-GGRI  243 (382)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            999999888 67777776554 358999999999999999999999998 5543

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.97  E-value=2.7e-31  Score=220.95  Aligned_cols=152  Identities=17%  Similarity=0.246  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +.+++++.+++|++++|+||||||||||+++|+|+++|++|++.+.|.+..........            ..++|..+.
T Consensus        17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~------------~~i~~~~~~   84 (171)
T cd03228          17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLR------------KNIAYVPQD   84 (171)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHH------------hhEEEEcCC
Confidence            57889999999999999999999999999999999999999999988754322111111            122232221


Q ss_pred             cCCCCccccccc-cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071         146 EDCSSPKTVLKY-MTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQ  223 (302)
Q Consensus       146 ~~~~~~~~~~~~-lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~  223 (302)
                      .... ..+..++ ||+||+||++||++++.+|++|||||   |+.++|+.. ..+.+++.+..+ +.+++++||+.+.+.
T Consensus        85 ~~~~-~~t~~e~lLS~G~~~rl~la~al~~~p~llllDE---P~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~  159 (171)
T cd03228          85 PFLF-SGTIRENILSGGQRQRIAIARALLRDPPILILDE---ATSALDPETEALILEALRALAK-GKTVIVIAHRLSTIR  159 (171)
T ss_pred             chhc-cchHHHHhhCHHHHHHHHHHHHHhcCCCEEEEEC---CCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHH
Confidence            1111 1122222 99999999999999999999999999   999999887 778888887654 689999999999998


Q ss_pred             hhccCCCeeeecC
Q psy2071         224 QYFDNAPLMNVPG  236 (302)
Q Consensus       224 ~~~d~~~~l~i~g  236 (302)
                      . ||++++|+ .|
T Consensus       160 ~-~d~~~~l~-~g  170 (171)
T cd03228         160 D-ADRIIVLD-DG  170 (171)
T ss_pred             h-CCEEEEEc-CC
Confidence            7 99999987 44

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.97  E-value=6.1e-32  Score=234.92  Aligned_cols=169  Identities=17%  Similarity=0.204  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH---HHH---HHHhhh------hhcc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA---MSV---AQRVSE------EMDC  133 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~---~~~---~~~~~~------~~~~  133 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+......   ...   ..++.+      ....
T Consensus        20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~   99 (228)
T cd03257          20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM   99 (228)
T ss_pred             eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcC
Confidence            5789999999999999999999999999999999999999999998865432110   000   001111      1112


Q ss_pred             ccccceeeee---------------------eecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071         134 QLGQEVGYSI---------------------RFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT  191 (302)
Q Consensus       134 ~~~~~v~~~~---------------------~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l  191 (302)
                      ++.+++.+..                     .+... ...+..+..||+||+||++||+||+.+|++|||||   |++++
T Consensus       100 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---Pt~~L  176 (228)
T cd03257         100 TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADE---PTSAL  176 (228)
T ss_pred             CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecC---CCCCC
Confidence            3333322110                     01110 11244567799999999999999999999999999   99999


Q ss_pred             HHHH-HHHHHHHHHcCCC-cEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         192 DILM-GVLKEVIKQRADL-KLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       192 D~~~-~~l~~ll~~~~~~-~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |+.. ..+.+++.+..+. +.|||++||+++.+..+||++++|+ .|+.
T Consensus       177 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~G~i  224 (228)
T cd03257         177 DVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMY-AGKI  224 (228)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEe-CCEE
Confidence            9887 7788888766543 7899999999999999999999998 6653

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=7.8e-32  Score=242.34  Aligned_cols=169  Identities=14%  Similarity=0.145  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh----hhHHHH---HHHhhh-----hhcc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR----VAAMSV---AQRVSE-----EMDC  133 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~----~~~~~~---~~~~~~-----~~~~  133 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.....    ......   ...+.+     .+..
T Consensus        22 ~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~  101 (290)
T PRK13634         22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEE  101 (290)
T ss_pred             ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhh
Confidence            6789999999999999999999999999999999999999999999875421    000000   011111     1123


Q ss_pred             ccccceeeeee------------------ecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         134 QLGQEVGYSIR------------------FEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       134 ~~~~~v~~~~~------------------~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      ++.+++.+...                  ....  ...++.+..||+||+||++||+||+.+|++|||||   ||+++|+
T Consensus       102 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDE---Pt~~LD~  178 (290)
T PRK13634        102 TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE---PTAGLDP  178 (290)
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC---CcccCCH
Confidence            44444433211                  0011  11345678899999999999999999999999999   9999998


Q ss_pred             HH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         194 LM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       194 ~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .. ..+.+++....+ .|.|||++|||++++..+||++++|+ .|+.
T Consensus       179 ~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~-~G~i  224 (290)
T PRK13634        179 KGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMH-KGTV  224 (290)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            87 778888877644 48999999999999999999999998 6663

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3.1e-32  Score=240.75  Aligned_cols=170  Identities=14%  Similarity=0.116  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--------HHHHHHHhhhhhccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--------AMSVAQRVSEEMDCQLG  136 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~  136 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.......        ...+.+........++.
T Consensus        19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   98 (255)
T PRK11300         19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVI   98 (255)
T ss_pred             EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHH
Confidence            4678999999999999999999999999999999999999999999887543211        00011111112223444


Q ss_pred             cceeeeee----------------------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEc
Q psy2071         137 QEVGYSIR----------------------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLD  182 (302)
Q Consensus       137 ~~v~~~~~----------------------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLD  182 (302)
                      +++.+...                                  +......++.+..||+||+||++||+||+.+|++||||
T Consensus        99 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  178 (255)
T PRK11300         99 ENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLD  178 (255)
T ss_pred             HHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            44432100                                  00001123455669999999999999999999999999


Q ss_pred             CCCCCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         183 EAHERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       183 E~~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |   |++++|+.. ..+.+++.+..+ .+.|||++||+++++.++||++++|+ .|+.
T Consensus       179 E---Pt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~g~i  232 (255)
T PRK11300        179 E---PAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVN-QGTP  232 (255)
T ss_pred             C---CccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCeE
Confidence            9   999999887 778888877654 37899999999999999999999998 6653

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.97  E-value=5.3e-32  Score=237.23  Aligned_cols=169  Identities=16%  Similarity=0.132  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh--hHHH-------HHHHhhhhhccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV--AAMS-------VAQRVSEEMDCQLG  136 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~--~~~~-------~~~~~~~~~~~~~~  136 (302)
                      +.+++++.+++|++++|+|+||||||||+++|+|+++|++|++.++|.+....  ....       +.+........++.
T Consensus        16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   95 (240)
T PRK09493         16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTAL   95 (240)
T ss_pred             EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHH
Confidence            57899999999999999999999999999999999999999999988654321  0001       11111111223444


Q ss_pred             cceeeeee-e-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         137 QEVGYSIR-F-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       137 ~~v~~~~~-~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      +++.+... .                   ......+..+..||+||+||++||+||+.+|+++||||   |++++|+.. 
T Consensus        96 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---P~~~LD~~~~  172 (240)
T PRK09493         96 ENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDE---PTSALDPELR  172 (240)
T ss_pred             HHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHH
Confidence            44433210 0                   00011234556799999999999999999999999999   999999887 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ..+.+++....+.+.|+|++||+.+++..+||++++|+ .|+.
T Consensus       173 ~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i  214 (240)
T PRK09493        173 HEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFID-KGRI  214 (240)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            77888888765558899999999999999999999998 6764

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.97  E-value=9.9e-32  Score=233.55  Aligned_cols=169  Identities=17%  Similarity=0.208  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc-----cccCCCEEEeecCchhhh--HHHHHH---Hhhh---hh
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY-----SKSVGAKAVACTQPRRVA--AMSVAQ---RVSE---EM  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~-----~~~~G~~~i~~~~~~~~~--~~~~~~---~~~~---~~  131 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|++     +|++|++.+.|.+.....  ......   .+.+   ..
T Consensus        14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   93 (227)
T cd03260          14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF   93 (227)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc
Confidence            3578899999999999999999999999999999999     999999999886543211  011111   1111   11


Q ss_pred             ccccccceeeeeee-------------------cCCC-Ccccc--ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071         132 DCQLGQEVGYSIRF-------------------EDCS-SPKTV--LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL  189 (302)
Q Consensus       132 ~~~~~~~v~~~~~~-------------------~~~~-~~~~~--~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~  189 (302)
                      ..++.+++.+....                   .... ..+..  ...||+||+||++||+||+.+|++|||||   |++
T Consensus        94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE---Pt~  170 (227)
T cd03260          94 PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDE---PTS  170 (227)
T ss_pred             cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CCc
Confidence            23444444322110                   0000 11233  47899999999999999999999999999   999


Q ss_pred             chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++|+.. ..+.+++.+..+. .|||++|||++.+..+||++++|+ .|+.
T Consensus       171 ~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~-~G~i  218 (227)
T cd03260         171 ALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLL-NGRL  218 (227)
T ss_pred             cCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEe-CCEE
Confidence            999887 7888888877655 899999999999999999999998 6653

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4e-32  Score=247.58  Aligned_cols=170  Identities=16%  Similarity=0.159  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH---HH---HHHhhhh------hc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM---SV---AQRVSEE------MD  132 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~---~~---~~~~~~~------~~  132 (302)
                      .++++|++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+.......   ..   ...+.+.      ..
T Consensus        29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~  108 (327)
T PRK11308         29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPR  108 (327)
T ss_pred             eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCc
Confidence            358999999999999999999999999999999999999999999998654321110   00   0111111      11


Q ss_pred             cccccceeeeeee-------------------cCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071         133 CQLGQEVGYSIRF-------------------EDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT  191 (302)
Q Consensus       133 ~~~~~~v~~~~~~-------------------~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l  191 (302)
                      .++++++.+.+..                   ...  ...++.+..|||||+||++||+||+.+|++||+||   ||+++
T Consensus       109 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDE---Pts~L  185 (327)
T PRK11308        109 KKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADE---PVSAL  185 (327)
T ss_pred             cCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEEC---CCccC
Confidence            2222222211100                   001  01245567899999999999999999999999999   99999


Q ss_pred             HHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         192 DILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       192 D~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |... ..+.+++.+..+ .+.|+|++|||++.+..+||++++|+ .|+.
T Consensus       186 D~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~-~G~i  233 (327)
T PRK11308        186 DVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMY-LGRC  233 (327)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            9887 677777776543 58999999999999999999999998 5554

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=6.5e-31  Score=209.99  Aligned_cols=173  Identities=16%  Similarity=0.164  Sum_probs=140.6

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh------hhhcccccc
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS------EEMDCQLGQ  137 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~  137 (302)
                      ..++++|++++.+||.++|+||+|||||||+++++.+++|++|.+.+.|........-...++++      ..++.++.+
T Consensus        16 a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeD   95 (223)
T COG4619          16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVED   95 (223)
T ss_pred             CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhh
Confidence            34588999999999999999999999999999999999999999999998764433322333332      245678888


Q ss_pred             ceeeeeeecCCC------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH
Q psy2071         138 EVGYSIRFEDCS------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL  198 (302)
Q Consensus       138 ~v~~~~~~~~~~------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l  198 (302)
                      |+-|..+.....                  ...+.+..||||++||++|+|.|..-|++|+|||   +|+++|+.. ..+
T Consensus        96 NlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE---~TsALD~~nkr~i  172 (223)
T COG4619          96 NLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDE---ITSALDESNKRNI  172 (223)
T ss_pred             ccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecC---chhhcChhhHHHH
Confidence            887776443321                  1234567799999999999999999999999999   999999988 778


Q ss_pred             HHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCcCCc
Q psy2071         199 KEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHP  240 (302)
Q Consensus       199 ~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~~~  240 (302)
                      .+++..+ .++.+.++.+|||-+.+.+.+|+++-+. +|....
T Consensus       173 e~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~-~G~~~~  214 (223)
T COG4619         173 EEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQ-PGHAGE  214 (223)
T ss_pred             HHHHHHHhhhhceEEEEEecChHHHhhhhheEEEec-cCcccc
Confidence            8887765 3778999999999999999999998887 665433

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.97  E-value=5.5e-32  Score=234.18  Aligned_cols=167  Identities=14%  Similarity=0.121  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-------HHHHHhhh----hhccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-------SVAQRVSE----EMDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-------~~~~~~~~----~~~~~  134 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+.......       ....++.+    ....+
T Consensus        20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   99 (221)
T TIGR02211        20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFT   99 (221)
T ss_pred             eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCc
Confidence            56889999999999999999999999999999999999999999988654221100       00011111    11234


Q ss_pred             cccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         135 LGQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       135 ~~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+++.+....                   ......++.+..||+||+||++||++|+.+|++|||||   |++++|+..
T Consensus       100 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE---Pt~~LD~~~  176 (221)
T TIGR02211       100 ALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADE---PTGNLDNNN  176 (221)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC---CCCcCCHHH
Confidence            44444331100                   00011244567799999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         196 -GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       196 -~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                       ..+.+++....+ .+.|+|++|||++.+.. +|++++|+ .|+
T Consensus       177 ~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~-~G~  218 (221)
T TIGR02211       177 AKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMK-DGQ  218 (221)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEe-CCE
Confidence             778888876643 47899999999998864 79999998 664

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.2e-31  Score=243.68  Aligned_cols=169  Identities=13%  Similarity=0.117  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh----------------hHHHHHH---H
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV----------------AAMSVAQ---R  126 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~----------------~~~~~~~---~  126 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|+|.+.|......                .......   .
T Consensus        41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~  120 (320)
T PRK13631         41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSM  120 (320)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEE
Confidence            68999999999999999999999999999999999999999999988543211                0111111   1


Q ss_pred             hhh-----hhccccccceeeeeeec------------------CC--CCccccccccCHHHHHHHhccccCCCCCcEEEE
Q psy2071         127 VSE-----EMDCQLGQEVGYSIRFE------------------DC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILL  181 (302)
Q Consensus       127 ~~~-----~~~~~~~~~v~~~~~~~------------------~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliL  181 (302)
                      +.+     .+..++.+++.+.....                  ..  ...++....|||||+||++|||||+.+|++|||
T Consensus       121 v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLL  200 (320)
T PRK13631        121 VFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIF  200 (320)
T ss_pred             EEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            111     12235555554332100                  01  012445667999999999999999999999999


Q ss_pred             cCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         182 DEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       182 DE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ||   ||+++|+.. ..+.+++....+.+.|||++|||++.+..+||++++|+ .|+.
T Consensus       201 DE---PtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~-~G~i  254 (320)
T PRK13631        201 DE---PTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMD-KGKI  254 (320)
T ss_pred             EC---CccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence            99   999999887 77888887665558899999999999999999999998 6653

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4.6e-32  Score=252.12  Aligned_cols=169  Identities=15%  Similarity=0.188  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-----------HHHHHhhhhhccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-----------SVAQRVSEEMDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~  134 (302)
                      .++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+.......           .+.+........+
T Consensus        43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T  122 (400)
T PRK10070         43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT  122 (400)
T ss_pred             EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence            47899999999999999999999999999999999999999999998754321110           1111111122345


Q ss_pred             cccceeeeeeec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         135 LGQEVGYSIRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       135 ~~~~v~~~~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+++.+.....                   .....++.+..|||||+||++|||||+.+|++|||||   |++++|+..
T Consensus       123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE---Pts~LD~~~  199 (400)
T PRK10070        123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDE---AFSALDPLI  199 (400)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC---CCccCCHHH
Confidence            555555432110                   0112345567899999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+++.... +.+.|||++|||++++..+||++++|+ .|+.
T Consensus       200 r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~-~G~i  243 (400)
T PRK10070        200 RTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQ-NGEV  243 (400)
T ss_pred             HHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence             77888877654 358899999999999999999999998 5543

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=8.3e-32  Score=241.77  Aligned_cols=169  Identities=18%  Similarity=0.181  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-------hHHHHHHHhhh-----hhcc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-------AAMSVAQRVSE-----EMDC  133 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-------~~~~~~~~~~~-----~~~~  133 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|+.|++.++|......       ........+.+     .+..
T Consensus        22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~  101 (286)
T PRK13646         22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFED  101 (286)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchh
Confidence            68999999999999999999999999999999999999999999988653210       00101111111     1112


Q ss_pred             ccccceeeeeee------------------cCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         134 QLGQEVGYSIRF------------------EDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       134 ~~~~~v~~~~~~------------------~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      ++.+++.+....                  ...  ...++.+..||+||+||++||+||+.+|++|||||   |++++|+
T Consensus       102 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDE---Pt~~LD~  178 (286)
T PRK13646        102 TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE---PTAGLDP  178 (286)
T ss_pred             hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC---CcccCCH
Confidence            444444432100                  011  11245677899999999999999999999999999   9999998


Q ss_pred             HH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         194 LM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       194 ~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .. ..+.+++.+..+ .+.||+++|||++++..+||++++|+ .|+.
T Consensus       179 ~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~-~G~i  224 (286)
T PRK13646        179 QSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMK-EGSI  224 (286)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence            88 778888887643 58999999999999999999999998 6653

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1e-31  Score=240.23  Aligned_cols=169  Identities=16%  Similarity=0.172  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHH---HHhhh-----hhcccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA---QRVSE-----EMDCQLGQ  137 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~  137 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+..........   ..+.+     ....++.+
T Consensus        19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~   98 (277)
T PRK13652         19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQ   98 (277)
T ss_pred             eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHH
Confidence            57899999999999999999999999999999999999999999988754321111111   11111     11234444


Q ss_pred             ceeeeee---e----------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071         138 EVGYSIR---F----------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV  197 (302)
Q Consensus       138 ~v~~~~~---~----------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~  197 (302)
                      ++.+...   +                ......++.+..||+||+||++||+||+.+|++|||||   |++++|+.. ..
T Consensus        99 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDE---Pt~gLD~~~~~~  175 (277)
T PRK13652         99 DIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE---PTAGLDPQGVKE  175 (277)
T ss_pred             HHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHH
Confidence            4432211   0                00012345567899999999999999999999999999   999999887 77


Q ss_pred             HHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         198 LKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       198 l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +.+++.+..+ .+.|||++||+++++.++||++++|+ .|+.
T Consensus       176 l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~-~G~i  216 (277)
T PRK13652        176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMD-KGRI  216 (277)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE-CCeE
Confidence            8888876654 48999999999999999999999998 6664

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=2.1e-31  Score=223.93  Aligned_cols=170  Identities=13%  Similarity=0.112  Sum_probs=134.7

Q ss_pred             hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH----------HHHhhhhhc
Q psy2071          63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV----------AQRVSEEMD  132 (302)
Q Consensus        63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~----------~~~~~~~~~  132 (302)
                      ..+++.++++.+++||+++|+|+||+||||++++|+|+.++.+|+|.+.|.+..+...-..          ..++  +..
T Consensus        15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~i--F~~   92 (237)
T COG0410          15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRI--FPR   92 (237)
T ss_pred             ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccc--hhh
Confidence            3456889999999999999999999999999999999999999999999987544322211          1222  234


Q ss_pred             cccccceeeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         133 CQLGQEVGYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       133 ~~~~~~v~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      .++.+|+.........                   ...+++...|||||+|.++|||||+.+|++|+|||   |+.++-|
T Consensus        93 LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDE---Ps~GLaP  169 (237)
T COG0410          93 LTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDE---PSEGLAP  169 (237)
T ss_pred             CcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecC---CccCcCH
Confidence            5666665432111100                   01234556699999999999999999999999999   9999999


Q ss_pred             HH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         194 LM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       194 ~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .. +.+.+.++..+ +.++||+.+.++...+.+++||.++|. .|+.
T Consensus       170 ~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle-~Gri  215 (237)
T COG0410         170 KIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLE-NGRI  215 (237)
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEe-CCEE
Confidence            88 88888888776 458999999999999999999999998 6763

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=6.4e-32  Score=238.64  Aligned_cols=163  Identities=16%  Similarity=0.143  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh----hhHHHHHHHhhhhhccccccceee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR----VAAMSVAQRVSEEMDCQLGQEVGY  141 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~  141 (302)
                      +.+++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+...    ++...  +........++.+++.+
T Consensus        16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~--q~~~~~~~~tv~e~l~~   93 (255)
T PRK11248         16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVF--QNEGLLPWRNVQDNVAF   93 (255)
T ss_pred             eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEe--CCCccCCCCcHHHHHHh
Confidence            5788999999999999999999999999999999999999999998765321    11111  11011111233333322


Q ss_pred             eee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071         142 SIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV  201 (302)
Q Consensus       142 ~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l  201 (302)
                      ...                   +......++.+..||+||+||++||++|+.+|++|||||   |++++|+.. ..+.++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE---Pt~~LD~~~~~~l~~~  170 (255)
T PRK11248         94 GLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDE---PFGALDAFTREQMQTL  170 (255)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCccCCHHHHHHHHHH
Confidence            110                   000011234567799999999999999999999999999   999999887 778888


Q ss_pred             HHHc-CCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         202 IKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       202 l~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      +... .+.+.|||++|||++.+..+||++++|+
T Consensus       171 L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~  203 (255)
T PRK11248        171 LLKLWQETGKQVLLITHDIEEAVFMATELVLLS  203 (255)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            8765 3457899999999999999999999997

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.9e-31  Score=238.61  Aligned_cols=168  Identities=17%  Similarity=0.186  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH-------HHHh-hhhhcccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV-------AQRV-SEEMDCQLGQ  137 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~  137 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|...........       .+.. ......++.+
T Consensus        22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e  101 (279)
T PRK13650         22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVED  101 (279)
T ss_pred             eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHH
Confidence            5789999999999999999999999999999999999999999999876432111111       1111 1122345566


Q ss_pred             ceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071         138 EVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV  197 (302)
Q Consensus       138 ~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~  197 (302)
                      ++.+......                   ....+..+..||+||+||++||+||+.+|++|||||   |++++|+.. ..
T Consensus       102 ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE---Pt~~LD~~~~~~  178 (279)
T PRK13650        102 DVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDE---ATSMLDPEGRLE  178 (279)
T ss_pred             HHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC---CcccCCHHHHHH
Confidence            6554321100                   011244567799999999999999999999999999   999999887 77


Q ss_pred             HHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         198 LKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       198 l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +.+++....+ .|.||+++||+++.+ .+||++++|+ .|+.
T Consensus       179 l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~-~G~i  218 (279)
T PRK13650        179 LIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMK-NGQV  218 (279)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEE-CCEE
Confidence            8888876654 489999999999998 5899999998 6664

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=6.1e-32  Score=236.40  Aligned_cols=169  Identities=16%  Similarity=0.197  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH----HHHHHhhh----hhccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM----SVAQRVSE----EMDCQLG  136 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~----~~~~~~~~----~~~~~~~  136 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+.......    .....+.+    ....++.
T Consensus        19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   98 (237)
T PRK11614         19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVE   98 (237)
T ss_pred             eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHH
Confidence            357899999999999999999999999999999999999999999988654221100    00011111    1123444


Q ss_pred             cceeeeeeec------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071         137 QEVGYSIRFE------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV  197 (302)
Q Consensus       137 ~~v~~~~~~~------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~  197 (302)
                      +++.+.....                  .....++.+..||+||+||++||++|+.+|++|||||   |++++|+.. ..
T Consensus        99 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDE---Pt~~LD~~~~~~  175 (237)
T PRK11614         99 ENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE---PSLGLAPIIIQQ  175 (237)
T ss_pred             HHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC---ccccCCHHHHHH
Confidence            4443211000                  0001234556799999999999999999999999999   999999887 77


Q ss_pred             HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         198 LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       198 l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +.+++.+..+.+.|+|++||+++++.++||++++|+ .|+
T Consensus       176 l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~  214 (237)
T PRK11614        176 IFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLE-NGH  214 (237)
T ss_pred             HHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEe-CCE
Confidence            888887765558899999999999999999999998 665

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.96  E-value=6e-32  Score=237.15  Aligned_cols=169  Identities=19%  Similarity=0.221  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHH-------HHHHhhhhhccccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMS-------VAQRVSEEMDCQLGQE  138 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  138 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+........       +.+........++.++
T Consensus        16 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~   95 (242)
T cd03295          16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEEN   95 (242)
T ss_pred             EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHH
Confidence            578899999999999999999999999999999999999999999886532211100       1111111112344444


Q ss_pred             eeeeee------------------ecCCC---CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H
Q psy2071         139 VGYSIR------------------FEDCS---SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G  196 (302)
Q Consensus       139 v~~~~~------------------~~~~~---~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~  196 (302)
                      +.+...                  .....   ..++.+..||+||+||++||+||+.+|++|||||   |++++|+.. .
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~~LD~~~~~  172 (242)
T cd03295          96 IALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDE---PFGALDPITRD  172 (242)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecC---CcccCCHHHHH
Confidence            432110                  00111   2245567899999999999999999999999999   999999887 7


Q ss_pred             HHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         197 VLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       197 ~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .+.+++....+ .+.+||++||+.+.+..+||++++|+ .|+.
T Consensus       173 ~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~-~G~i  214 (242)
T cd03295         173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMK-NGEI  214 (242)
T ss_pred             HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence            78888876644 47899999999999999999999998 7764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.96  E-value=1.2e-31  Score=232.55  Aligned_cols=169  Identities=15%  Similarity=0.158  Sum_probs=126.4

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccccccee
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVG  140 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  140 (302)
                      +....+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|........     ........++.+++.
T Consensus        32 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~-----~~~~~~~~tv~enl~  106 (224)
T cd03220          32 VGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGL-----GGGFNPELTGRENIY  106 (224)
T ss_pred             cCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcc-----cccCCCCCcHHHHHH
Confidence            333446899999999999999999999999999999999999999999998754221100     000001111111111


Q ss_pred             e------------------eeee-cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH
Q psy2071         141 Y------------------SIRF-EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE  200 (302)
Q Consensus       141 ~------------------~~~~-~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~  200 (302)
                      +                  .... ......++.+..||+||+||++||++++.+|++|||||   |++++|+.. ..+.+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE---P~~gLD~~~~~~~~~  183 (224)
T cd03220         107 LNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE---VLAVGDAAFQEKCQR  183 (224)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHHH
Confidence            1                  0001 11112345678899999999999999999999999999   999999887 67777


Q ss_pred             HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++....+.+.|||++||+.+++..+||++.+|+ .|+.
T Consensus       184 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i  220 (224)
T cd03220         184 RLRELLKQGKTVILVSHDPSSIKRLCDRALVLE-KGKI  220 (224)
T ss_pred             HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            877655457899999999999999999999998 6653

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.96  E-value=9.8e-32  Score=235.79  Aligned_cols=169  Identities=13%  Similarity=0.140  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH--------HHHHHhhhhhccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM--------SVAQRVSEEMDCQLG  136 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~  136 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+.......        .+.+........++.
T Consensus        16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   95 (242)
T TIGR03411        16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVF   95 (242)
T ss_pred             EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHH
Confidence            467899999999999999999999999999999999999999999998654221100        011111111123444


Q ss_pred             cceeeeee---------------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071         137 QEVGYSIR---------------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL  189 (302)
Q Consensus       137 ~~v~~~~~---------------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~  189 (302)
                      +++.+...                           +......++.+..||+||+||++||+|++.+|++|||||   |++
T Consensus        96 ~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDE---Pt~  172 (242)
T TIGR03411        96 ENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDE---PVA  172 (242)
T ss_pred             HHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecC---Ccc
Confidence            43332110                           000011244567799999999999999999999999999   999


Q ss_pred             chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++|+.. ..+.++++...+ +.|+|++||+++++..+||++++|+ .|+.
T Consensus       173 ~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~-~g~~  220 (242)
T TIGR03411       173 GMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLH-QGSV  220 (242)
T ss_pred             CCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEE-CCeE
Confidence            999887 778888887655 5799999999999999999999998 6664

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=7.7e-32  Score=236.47  Aligned_cols=170  Identities=17%  Similarity=0.148  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch------hhh---HH----HHHHHhhhhh
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR------RVA---AM----SVAQRVSEEM  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~------~~~---~~----~~~~~~~~~~  131 (302)
                      .+.+++++.+++|++++|+||||||||||+++|+|+++|++|++.+.|.+..      ...   ..    .+.+......
T Consensus        16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~   95 (242)
T PRK11124         16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWP   95 (242)
T ss_pred             eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccC
Confidence            3578999999999999999999999999999999999999999999886531      000   00    0111111111


Q ss_pred             ccccccceeeee--------------------eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071         132 DCQLGQEVGYSI--------------------RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT  191 (302)
Q Consensus       132 ~~~~~~~v~~~~--------------------~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l  191 (302)
                      ..++.+++.+..                    .+......++.+..||+||+||++||+||+.+|+++||||   |++++
T Consensus        96 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDE---Pt~~L  172 (242)
T PRK11124         96 HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDE---PTAAL  172 (242)
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CCCcC
Confidence            234444443210                    0000012244567799999999999999999999999999   99999


Q ss_pred             HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         192 DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       192 D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |+.. ..+.+++++..+.+.|++++||+.+++.++||++++|. .|+.
T Consensus       173 D~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~-~g~i  219 (242)
T PRK11124        173 DPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYME-NGHI  219 (242)
T ss_pred             CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence            9887 77888888766568899999999999999999999998 6653

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.96  E-value=1.2e-31  Score=227.59  Aligned_cols=158  Identities=15%  Similarity=0.199  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc--cccCCCEEEeecCchhhhHHHHHHHhhh----hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY--SKSVGAKAVACTQPRRVAAMSVAQRVSE----EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~--~~~~G~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v  139 (302)
                      +.+++++.+++|++++|+||||||||||+++|+|++  +|++|++.++|..............+.+    ....++.+++
T Consensus        24 ~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i  103 (194)
T cd03213          24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETL  103 (194)
T ss_pred             ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHH
Confidence            578999999999999999999999999999999999  9999999999876532100000001111    1112233322


Q ss_pred             eeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecC
Q psy2071         140 GYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLD  218 (302)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd  218 (302)
                      .+..          ....||+||+||++||+||+.+|+++||||   |++++|+.. ..+.+++....+.+.|++++||+
T Consensus       104 ~~~~----------~~~~LS~G~~qrv~laral~~~p~illlDE---P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~  170 (194)
T cd03213         104 MFAA----------KLRGLSGGERKRVSIALELVSNPSLLFLDE---PTSGLDSSSALQVMSLLRRLADTGRTIICSIHQ  170 (194)
T ss_pred             HHHH----------HhccCCHHHHHHHHHHHHHHcCCCEEEEeC---CCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            2111          112799999999999999999999999999   999999887 77888888765558899999999


Q ss_pred             HH-HHHhhccCCCeeeecCc
Q psy2071         219 AG-KFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       219 ~~-~~~~~~d~~~~l~i~g~  237 (302)
                      .+ .+..+||++++|+ .|+
T Consensus       171 ~~~~~~~~~d~v~~l~-~G~  189 (194)
T cd03213         171 PSSEIFELFDKLLLLS-QGR  189 (194)
T ss_pred             chHHHHHhcCEEEEEe-CCE
Confidence            96 7889999999998 665

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.3e-31  Score=238.88  Aligned_cols=170  Identities=15%  Similarity=0.156  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh--h---hHHHHHHHhhhh-----hccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR--V---AAMSVAQRVSEE-----MDCQ  134 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~--~---~~~~~~~~~~~~-----~~~~  134 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+...  .   ........+.+.     ...+
T Consensus        15 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~   94 (271)
T PRK13638         15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTD   94 (271)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccccc
Confidence            36889999999999999999999999999999999999999999998865320  0   000000111111     1112


Q ss_pred             cccceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         135 LGQEVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       135 ~~~~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+++.+...                   +......++.+..||+||+||++||++|+.+|++|||||   |++++|+..
T Consensus        95 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDE---Pt~~LD~~~  171 (271)
T PRK13638         95 IDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDE---PTAGLDPAG  171 (271)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHH
Confidence            2222222100                   000011245567799999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+++.+..+.+.|||++|||++.+..+||++++|+ .|+.
T Consensus       172 ~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~-~G~i  214 (271)
T PRK13638        172 RTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLR-QGQI  214 (271)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence             77888887765557899999999999999999999998 6653

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1e-31  Score=235.49  Aligned_cols=170  Identities=15%  Similarity=0.137  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--------HHHHHHhhhhhccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--------MSVAQRVSEEMDCQLG  136 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~  136 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+......        ..+.+........++.
T Consensus        17 ~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   96 (241)
T PRK10895         17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVY   96 (241)
T ss_pred             EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHH
Confidence            35789999999999999999999999999999999999999999998865422110        0011111111123444


Q ss_pred             cceeeeeeecC--------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         137 QEVGYSIRFED--------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       137 ~~v~~~~~~~~--------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      +++.+......                    ....+.....||+||+||++||+|++.+|++|||||   |++++|+.. 
T Consensus        97 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~~LD~~~~  173 (241)
T PRK10895         97 DNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE---PFAGVDPISV  173 (241)
T ss_pred             HHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHH
Confidence            54433211100                    001234556799999999999999999999999999   999999877 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ..+.+++....+.+.|++++||+.+.+..+||++++|+ .|+.
T Consensus       174 ~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~-~G~i  215 (241)
T PRK10895        174 IDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVS-QGHL  215 (241)
T ss_pred             HHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe-CCeE
Confidence            67778887665568899999999999999999999998 6664

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.96  E-value=1.2e-31  Score=237.36  Aligned_cols=170  Identities=16%  Similarity=0.181  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhhh----hhcccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVSE----EMDCQLGQ  137 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~~----~~~~~~~~  137 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+.........   ...+.+    ....++.+
T Consensus        16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e   95 (258)
T PRK13548         16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEE   95 (258)
T ss_pred             eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHH
Confidence            35789999999999999999999999999999999999999999998865322111100   111111    12234444


Q ss_pred             ceeeeeeec-------------------CCCCccccccccCHHHHHHHhccccCC------CCCcEEEEcCCCCCCcchH
Q psy2071         138 EVGYSIRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPML------ENYQVILLDEAHERTLATD  192 (302)
Q Consensus       138 ~v~~~~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~------~~p~lliLDE~~~p~~~lD  192 (302)
                      ++.+.....                   .....++.+..||+||+||++||+||+      .+|++|||||   |++++|
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDE---Pt~~LD  172 (258)
T PRK13548         96 VVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDE---PTSALD  172 (258)
T ss_pred             HHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeC---CcccCC
Confidence            443321100                   001124456779999999999999999      5999999999   999999


Q ss_pred             HHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         193 ILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       193 ~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +.. ..+.+++.... +.+.|||++|||++.+..+||++++|+ .|+.
T Consensus       173 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i  219 (258)
T PRK13548        173 LAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLH-QGRL  219 (258)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEE-CCEE
Confidence            887 77888887665 557899999999999999999999998 6653

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.96  E-value=1e-31  Score=239.25  Aligned_cols=169  Identities=17%  Similarity=0.190  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------H----HHHHHhhhhhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------M----SVAQRVSEEMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~----~~~~~~~~~~~~~~  135 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|........      .    .+.+........++
T Consensus        22 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv  101 (269)
T PRK11831         22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNV  101 (269)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCH
Confidence            5788999999999999999999999999999999999999999998864321110      0    01111111122344


Q ss_pred             ccceeeeeee--------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         136 GQEVGYSIRF--------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       136 ~~~v~~~~~~--------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+++.+....                    ......++.+..||+||+||++||+||+.+|++|||||   |++++|+..
T Consensus       102 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE---Pt~~LD~~~  178 (269)
T PRK11831        102 FDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDE---PFVGQDPIT  178 (269)
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CCccCCHHH
Confidence            5554332110                    00011234567799999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+++....+ .+.|||++|||++.+..+||++++|+ .|+.
T Consensus       179 ~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~-~G~i  222 (269)
T PRK11831        179 MGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVA-DKKI  222 (269)
T ss_pred             HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEE-CCEE
Confidence             778888876644 37899999999999999999999998 6653

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=6.2e-32  Score=246.36  Aligned_cols=170  Identities=14%  Similarity=0.137  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc----ccCCCEEEeecCchhhhHHHH-------HHHhhh----
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS----KSVGAKAVACTQPRRVAAMSV-------AQRVSE----  129 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~----~~~G~~~i~~~~~~~~~~~~~-------~~~~~~----  129 (302)
                      .+++++++.|++||+++|+|+||||||||+++|+|+++    +++|++.+.|.+.........       ...+.+    
T Consensus        21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~  100 (326)
T PRK11022         21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT  100 (326)
T ss_pred             EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence            36899999999999999999999999999999999987    478999999876432211100       011111    


Q ss_pred             --hhccccccceeeeee-------------------ecCCC----CccccccccCHHHHHHHhccccCCCCCcEEEEcCC
Q psy2071         130 --EMDCQLGQEVGYSIR-------------------FEDCS----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEA  184 (302)
Q Consensus       130 --~~~~~~~~~v~~~~~-------------------~~~~~----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~  184 (302)
                        ....++++++...+.                   .....    ..+.....|||||+||++||+||+.+|++||+|| 
T Consensus       101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE-  179 (326)
T PRK11022        101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE-  179 (326)
T ss_pred             hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC-
Confidence              111222222211110                   00110    1234567799999999999999999999999999 


Q ss_pred             CCCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         185 HERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       185 ~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                        ||+++|+.. ..+.+++....+ .+.|+|++|||++.+.++||++++|+ .|+.
T Consensus       180 --Pts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~-~G~i  232 (326)
T PRK11022        180 --PTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMY-AGQV  232 (326)
T ss_pred             --CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence              999999887 777787776543 58999999999999999999999998 5553

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.2e-31  Score=232.45  Aligned_cols=169  Identities=17%  Similarity=0.242  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~v  139 (302)
                      +.+++++.|.+|++++|+|+||||||||+++|+|+++|++|++.+.|.+...........   .+.+   ....++.+++
T Consensus        18 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l   97 (241)
T PRK14250         18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNI   97 (241)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHH
Confidence            578899999999999999999999999999999999999999999886532211000000   0011   1112333333


Q ss_pred             eeeeee--------------cCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHH
Q psy2071         140 GYSIRF--------------EDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVI  202 (302)
Q Consensus       140 ~~~~~~--------------~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll  202 (302)
                      .+....              ....  ..++....||+||+||++||+|++.+|++|||||   |++++|+.. ..+.+++
T Consensus        98 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE---Pt~~LD~~~~~~l~~~l  174 (241)
T PRK14250         98 EYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE---PTSALDPTSTEIIEELI  174 (241)
T ss_pred             hcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHHHHH
Confidence            321110              0111  1234567799999999999999999999999999   999999877 7788888


Q ss_pred             HHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         203 KQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       203 ~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ....+ .+.|||++|||.+++..+||++++|+ .|+.
T Consensus       175 ~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~-~G~i  210 (241)
T PRK14250        175 VKLKNKMNLTVIWITHNMEQAKRIGDYTAFLN-KGIL  210 (241)
T ss_pred             HHHHHhCCCEEEEEeccHHHHHHhCCEEEEEe-CCEE
Confidence            76544 47899999999999999999999998 6653

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.96  E-value=6.2e-31  Score=220.21  Aligned_cols=154  Identities=16%  Similarity=0.201  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +.+++++.|++|++++|+|+||||||||+++|+|+.+|++|++.++|...... .....            ..++|..+.
T Consensus        17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~------------~~i~~~~q~   83 (178)
T cd03247          17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALS------------SLISVLNQR   83 (178)
T ss_pred             ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHH------------hhEEEEccC
Confidence            57889999999999999999999999999999999999999999988754321 11111            122222211


Q ss_pred             cC---CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHH
Q psy2071         146 ED---CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGK  221 (302)
Q Consensus       146 ~~---~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~  221 (302)
                      ..   ....+.....||+||+||++||+|++.+|+++||||   |++++|+.. ..+.+++....+ +.|++++||+.++
T Consensus        84 ~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDE---P~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~  159 (178)
T cd03247          84 PYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDE---PTVGLDPITERQLLSLIFEVLK-DKTLIWITHHLTG  159 (178)
T ss_pred             CeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEEC---CcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH
Confidence            10   011111257899999999999999999999999999   999999887 778888877654 7899999999999


Q ss_pred             HHhhccCCCeeeecCcC
Q psy2071         222 FQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       222 ~~~~~d~~~~l~i~g~~  238 (302)
                      +. .||++++|+ .|+.
T Consensus       160 ~~-~~d~~~~l~-~g~i  174 (178)
T cd03247         160 IE-HMDKILFLE-NGKI  174 (178)
T ss_pred             HH-hCCEEEEEE-CCEE
Confidence            86 699999998 6653

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.9e-31  Score=249.26  Aligned_cols=180  Identities=16%  Similarity=0.152  Sum_probs=146.3

Q ss_pred             HHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--------HHHHHH
Q psy2071          54 LHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--------AMSVAQ  125 (302)
Q Consensus        54 l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--------~~~~~~  125 (302)
                      +.+..+.+|...+++++++.+.+||+++|+|+||||||||+|+|+|.++|++|++.++|......+        ...+.|
T Consensus        11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~Q   90 (500)
T COG1129          11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQ   90 (500)
T ss_pred             eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEee
Confidence            446677899999999999999999999999999999999999999999999999999987543211        112223


Q ss_pred             Hhhhhhccccccceeeee---e--------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEc
Q psy2071         126 RVSEEMDCQLGQEVGYSI---R--------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLD  182 (302)
Q Consensus       126 ~~~~~~~~~~~~~v~~~~---~--------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLD  182 (302)
                      .++..++.++.+|+...-   +                    .......++.+..||.||+|.|+||+|+..++++||||
T Consensus        91 El~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlD  170 (500)
T COG1129          91 ELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILD  170 (500)
T ss_pred             chhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            333444555655553211   0                    11101256778889999999999999999999999999


Q ss_pred             CCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         183 EAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       183 E~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      |   ||++|+... +.+.++++++++.|+++|++||.++++.++||++.||+ .|+
T Consensus       171 E---PTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlR-DG~  222 (500)
T COG1129         171 E---PTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLR-DGR  222 (500)
T ss_pred             C---CcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEe-CCE
Confidence            9   999999766 88999999999999999999999999999999999999 665

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3.7e-31  Score=236.14  Aligned_cols=168  Identities=14%  Similarity=0.103  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-HHHH---HHhhh-----hhccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-MSVA---QRVSE-----EMDCQLG  136 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-~~~~---~~~~~-----~~~~~~~  136 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+...... ....   ..+.+     ....++.
T Consensus        17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~   96 (274)
T PRK13644         17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVE   96 (274)
T ss_pred             eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHH
Confidence            6789999999999999999999999999999999999999999999876432110 0111   11111     1223444


Q ss_pred             cceeeeeeec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H
Q psy2071         137 QEVGYSIRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G  196 (302)
Q Consensus       137 ~~v~~~~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~  196 (302)
                      +++.+.....                   .....++.+..||+||+||++||+||+.+|++|||||   |++++|+.. .
T Consensus        97 enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---Pt~gLD~~~~~  173 (274)
T PRK13644         97 EDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE---VTSMLDPDSGI  173 (274)
T ss_pred             HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHH
Confidence            4443321100                   0011245567799999999999999999999999999   999999888 7


Q ss_pred             HHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         197 VLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       197 ~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .+.+++.++.+.|.||+++||+++.+ ..||++++|+ .|+.
T Consensus       174 ~l~~~l~~l~~~g~til~~tH~~~~~-~~~d~v~~l~-~G~i  213 (274)
T PRK13644        174 AVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMD-RGKI  213 (274)
T ss_pred             HHHHHHHHHHhCCCEEEEEecCHHHH-hhCCEEEEEE-CCEE
Confidence            78888877665689999999999998 5699999998 6653

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.96  E-value=5.8e-32  Score=246.81  Aligned_cols=169  Identities=17%  Similarity=0.198  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc---CCCEEEeecCchhhhHHHH-------HHHhhh-----
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS---VGAKAVACTQPRRVAAMSV-------AQRVSE-----  129 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~---~G~~~i~~~~~~~~~~~~~-------~~~~~~-----  129 (302)
                      .+++++++.|++||+++|+|+||||||||+++|+|+++|+   +|++.++|.+.........       ...+.+     
T Consensus        30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~  109 (330)
T PRK09473         30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTS  109 (330)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhh
Confidence            3578999999999999999999999999999999999986   8999999876422111100       011111     


Q ss_pred             -hhccccccceeeeeee-------------------cCCC----CccccccccCHHHHHHHhccccCCCCCcEEEEcCCC
Q psy2071         130 -EMDCQLGQEVGYSIRF-------------------EDCS----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH  185 (302)
Q Consensus       130 -~~~~~~~~~v~~~~~~-------------------~~~~----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~  185 (302)
                       ....++.+++.+.+..                   ....    ..+.....|||||+||++||+||+.+|++||+||  
T Consensus       110 l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDE--  187 (330)
T PRK09473        110 LNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADE--  187 (330)
T ss_pred             cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC--
Confidence             1112233222211100                   0000    0123556799999999999999999999999999  


Q ss_pred             CCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         186 ERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       186 ~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                       ||+++|... ..+.+++....+ .+.|+|++|||++.+..+||++++|+ .|+
T Consensus       188 -Pts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~-~G~  239 (330)
T PRK09473        188 -PTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMY-AGR  239 (330)
T ss_pred             -CCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEE-CCE
Confidence             999999887 677777776543 48999999999999999999999998 554

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.96  E-value=9.2e-32  Score=238.06  Aligned_cols=170  Identities=17%  Similarity=0.141  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-------------hHHHHHHHh---h
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-------------AAMSVAQRV---S  128 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-------------~~~~~~~~~---~  128 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+....             ........+   .
T Consensus        19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~   98 (257)
T PRK10619         19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVF   98 (257)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEe
Confidence            357889999999999999999999999999999999999999999988643210             000011111   1


Q ss_pred             h----hhccccccceeeee-------------------eecCCC-C-ccccccccCHHHHHHHhccccCCCCCcEEEEcC
Q psy2071         129 E----EMDCQLGQEVGYSI-------------------RFEDCS-S-PKTVLKYMTDGMLLREGMSDPMLENYQVILLDE  183 (302)
Q Consensus       129 ~----~~~~~~~~~v~~~~-------------------~~~~~~-~-~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE  183 (302)
                      +    ....++.+++.+..                   ...... . .+.....||+||+||++||+||+.+|++|||||
T Consensus        99 q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  178 (257)
T PRK10619         99 QHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDE  178 (257)
T ss_pred             cCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            1    11234444443210                   000111 1 134567899999999999999999999999999


Q ss_pred             CCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         184 AHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       184 ~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                         |++++|+.. ..+.+++....+.|.+|+++|||.+++..+||++++|+ .|+.
T Consensus       179 ---Pt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~-~G~i  230 (257)
T PRK10619        179 ---PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH-QGKI  230 (257)
T ss_pred             ---CcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence               999999887 77888888766568999999999999999999999998 6653

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.96  E-value=1.5e-31  Score=246.72  Aligned_cols=165  Identities=15%  Similarity=0.106  Sum_probs=126.3

Q ss_pred             HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----------HHHHHHHhhhhhcccccc
Q psy2071          69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----------AMSVAQRVSEEMDCQLGQ  137 (302)
Q Consensus        69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  137 (302)
                      ++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.......           ...+.+........++.+
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e   94 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG   94 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence            688999999999999999999999999999999999999999886532110           001111111222345666


Q ss_pred             ceeeeeeec-----------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         138 EVGYSIRFE-----------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       138 ~v~~~~~~~-----------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                      ++.+.....                 .....++.+..|||||+||++||+||+.+|++|||||   |++++|+.. ..+.
T Consensus        95 nl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDE---Pts~LD~~~~~~l~  171 (354)
T TIGR02142        95 NLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE---PLAALDDPRKYEIL  171 (354)
T ss_pred             HHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC---CCcCCCHHHHHHHH
Confidence            655432110                 0011244567799999999999999999999999999   999999887 7778


Q ss_pred             HHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         200 EVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       200 ~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +++++..+ .+.|+|++|||++++..+||++++|+ .|+
T Consensus       172 ~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~-~G~  209 (354)
T TIGR02142       172 PYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLE-DGR  209 (354)
T ss_pred             HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe-CCE
Confidence            88776544 47899999999999999999999998 555

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.5e-31  Score=238.09  Aligned_cols=169  Identities=16%  Similarity=0.123  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-------hHHHHHHHhhh-----hhcc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-------AAMSVAQRVSE-----EMDC  133 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-------~~~~~~~~~~~-----~~~~  133 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+....       .......++.+     .+..
T Consensus        22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~  101 (280)
T PRK13649         22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEE  101 (280)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccc
Confidence            57889999999999999999999999999999999999999999988643210       00000011111     1122


Q ss_pred             ccccceeeee------------------eecCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         134 QLGQEVGYSI------------------RFEDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       134 ~~~~~v~~~~------------------~~~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      ++.+++.+..                  ......  ..++.+..||+||+||++||+||+.+|++|||||   |++++|+
T Consensus       102 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE---Pt~~LD~  178 (280)
T PRK13649        102 TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDE---PTAGLDP  178 (280)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCH
Confidence            3444433211                  000111  1245667899999999999999999999999999   9999998


Q ss_pred             HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .. ..+.+++....+.+.|||++||+.+++..+||++++|+ .|+.
T Consensus       179 ~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~-~G~i  223 (280)
T PRK13649        179 KGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLE-KGKL  223 (280)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEE-CCEE
Confidence            87 77888887665558899999999999999999999998 6653

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.2e-31  Score=237.06  Aligned_cols=170  Identities=15%  Similarity=0.199  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhhh----hhcccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVSE----EMDCQLGQ  137 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~~----~~~~~~~~  137 (302)
                      .+++++++.+++|++++|+|+||||||||+++|+|+++|++|++.+.|.+.........   ...+.+    ....++.+
T Consensus        16 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   95 (255)
T PRK11231         16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRE   95 (255)
T ss_pred             EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHH
Confidence            35789999999999999999999999999999999999999999998865432111110   111111    11224444


Q ss_pred             ceeeeee-----ec-----------------C-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         138 EVGYSIR-----FE-----------------D-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       138 ~v~~~~~-----~~-----------------~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      ++.+...     +.                 . ....++.+..||+||+||++||+|++.+|++|||||   |++++|+.
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---P~~~LD~~  172 (255)
T PRK11231         96 LVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDE---PTTYLDIN  172 (255)
T ss_pred             HHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHH
Confidence            4432210     00                 0 001244567799999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      . ..+.+++....+.+.|+|++||+++.+.++||++++|+ .|+.
T Consensus       173 ~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~-~G~i  216 (255)
T PRK11231        173 HQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLA-NGHV  216 (255)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEE-CCeE
Confidence            7 77888887665558899999999999999999999998 6664

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.96  E-value=2.1e-31  Score=236.73  Aligned_cols=169  Identities=16%  Similarity=0.224  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------HHHHHHhhh------hhcc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------MSVAQRVSE------EMDC  133 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~~~~~~~~~------~~~~  133 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+......      ......+.+      ....
T Consensus        26 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~  105 (265)
T TIGR02769        26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRM  105 (265)
T ss_pred             EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCC
Confidence            5789999999999999999999999999999999999999999998865322110      000011111      1112


Q ss_pred             ccccceeeee-------------------eecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071         134 QLGQEVGYSI-------------------RFEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD  192 (302)
Q Consensus       134 ~~~~~v~~~~-------------------~~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD  192 (302)
                      ++.+++.+..                   .....  ...+..+..||+||+||++||+||+.+|++|||||   |++++|
T Consensus       106 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDE---Pt~~LD  182 (265)
T TIGR02769       106 TVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDE---AVSNLD  182 (265)
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCC
Confidence            3333322110                   00011  11245667799999999999999999999999999   999999


Q ss_pred             HHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         193 ILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       193 ~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +.. ..+.+++....+ .+.|||++|||++.+..+||++++|+ .|+.
T Consensus       183 ~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~-~G~i  229 (265)
T TIGR02769       183 MVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMD-KGQI  229 (265)
T ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEe-CCEE
Confidence            887 677788776544 48899999999999999999999998 6653

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.96  E-value=7.9e-32  Score=230.72  Aligned_cols=163  Identities=15%  Similarity=0.134  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh---HH-H-------HHHHhhhhhccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA---AM-S-------VAQRVSEEMDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~---~~-~-------~~~~~~~~~~~~  134 (302)
                      +++++++.+++|++++|+||||||||||+++|+|+++|++|++.+.|.+.....   .. .       +.+........+
T Consensus        13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   92 (206)
T TIGR03608        13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENET   92 (206)
T ss_pred             EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCc
Confidence            578999999999999999999999999999999999999999999887632110   00 0       011111111234


Q ss_pred             cccceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         135 LGQEVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       135 ~~~~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+++.+...                   +......++.+..||+||+||++||+||+.+|++|||||   |++++|+..
T Consensus        93 ~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDE---Pt~~LD~~~  169 (206)
T TIGR03608        93 VEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADE---PTGSLDPKN  169 (206)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CcCCCCHHH
Confidence            4444332110                   000012245667799999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCee
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLM  232 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l  232 (302)
                       ..+.+++++..+.+.++|++||+.+.+ .+||++++|
T Consensus       170 ~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l  206 (206)
T TIGR03608       170 RDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL  206 (206)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence             788888887655588999999999865 589988764

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.96  E-value=2.2e-31  Score=231.50  Aligned_cols=168  Identities=15%  Similarity=0.100  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-----------HHHHHhhhhhccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-----------SVAQRVSEEMDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~  134 (302)
                      +.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.........           .+.+........+
T Consensus        25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~t  104 (228)
T PRK10584         25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLN  104 (228)
T ss_pred             EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcC
Confidence            47889999999999999999999999999999999999999999988654221100           0011111111234


Q ss_pred             cccceeeeeeec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         135 LGQEVGYSIRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       135 ~~~~v~~~~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+++.+...+.                   .....++.+..||+||+||++||+||+.+|++|||||   |++++|+..
T Consensus       105 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDE---Pt~~LD~~~  181 (228)
T PRK10584        105 ALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADE---PTGNLDRQT  181 (228)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCCCCHHH
Confidence            444443211100                   0011234567799999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+++.+.. +.+.|||++|||.+.+. .||++++|+ .|+.
T Consensus       182 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~-~g~i  224 (228)
T PRK10584        182 GDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLV-NGQL  224 (228)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEE-CCEE
Confidence             77888887664 34789999999999875 599999998 6653

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.8e-31  Score=235.96  Aligned_cols=168  Identities=17%  Similarity=0.153  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhh-----hhhcccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVS-----EEMDCQLGQ  137 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~  137 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+.........   ..++.     .....++.+
T Consensus        22 ~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e  101 (279)
T PRK13635         22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQD  101 (279)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHH
Confidence            5788999999999999999999999999999999999999999999876432111111   11111     122335555


Q ss_pred             ceeeeeeec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071         138 EVGYSIRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV  197 (302)
Q Consensus       138 ~v~~~~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~  197 (302)
                      ++.+.....                   .....++.+..||+||+||++||+||+.+|++|||||   |++++|+.. ..
T Consensus       102 nl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---Pt~gLD~~~~~~  178 (279)
T PRK13635        102 DVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE---ATSMLDPRGRRE  178 (279)
T ss_pred             HHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHH
Confidence            554322110                   0012344567799999999999999999999999999   999999888 78


Q ss_pred             HHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         198 LKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       198 l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +.+++....+ .+.||+++||+++.+. .||++++|+ .|+.
T Consensus       179 l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~-~G~i  218 (279)
T PRK13635        179 VLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMN-KGEI  218 (279)
T ss_pred             HHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEE-CCEE
Confidence            8888887654 3899999999999997 599999998 6653

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.7e-31  Score=238.10  Aligned_cols=169  Identities=19%  Similarity=0.189  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch--hhhHH---HHHHHhhh-----hhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR--RVAAM---SVAQRVSE-----EMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~--~~~~~---~~~~~~~~-----~~~~~~  135 (302)
                      +.+++++.|++||+++|+|+||||||||+++|+|+++|++|++.+.|.+..  .....   ....++.+     ....++
T Consensus        21 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv  100 (283)
T PRK13636         21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASV  100 (283)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccH
Confidence            678999999999999999999999999999999999999999999986542  11000   11111111     122345


Q ss_pred             ccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         136 GQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       136 ~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+++.+....                   ......++.+..||+||+||++||+||+.+|++|||||   |++++|+.. 
T Consensus       101 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDE---Pt~gLD~~~~  177 (283)
T PRK13636        101 YQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDE---PTAGLDPMGV  177 (283)
T ss_pred             HHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CccCCCHHHH
Confidence            5555432110                   00012345677799999999999999999999999999   999999888 


Q ss_pred             HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 ~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ..+.+++....+ .+.||+++||+++.+..+||++++|+ .|+.
T Consensus       178 ~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~-~G~i  220 (283)
T PRK13636        178 SEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMK-EGRV  220 (283)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence            778888876544 47899999999999999999999998 6653

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.5e-31  Score=233.29  Aligned_cols=168  Identities=14%  Similarity=0.125  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHH---H----HHHhhh----hhccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMS---V----AQRVSE----EMDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~---~----~~~~~~----~~~~~  134 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+........   .    ..++.+    ....+
T Consensus        24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t  103 (233)
T PRK11629         24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFT  103 (233)
T ss_pred             eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCC
Confidence            578899999999999999999999999999999999999999999986543221100   0    011111    11234


Q ss_pred             cccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         135 LGQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       135 ~~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+++.+...+                   ......++.+..||+||+||++||+|++.+|++|||||   |++++|+..
T Consensus       104 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE---Pt~~LD~~~  180 (233)
T PRK11629        104 ALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADE---PTGNLDARN  180 (233)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCCCCHHH
Confidence            44554332110                   00011234567799999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+++.+..+ .+.|||++||+++++..+ |++++|+ .|+.
T Consensus       181 ~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~-~G~i  223 (233)
T PRK11629        181 ADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMR-DGRL  223 (233)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEE-CCEE
Confidence             778888887643 578999999999998875 6888887 6654

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.8e-31  Score=235.95  Aligned_cols=170  Identities=15%  Similarity=0.156  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhhh----hhcccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVSE----EMDCQLGQ  137 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~~----~~~~~~~~  137 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+.........   ...+.+    ....++.+
T Consensus        25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e  104 (265)
T PRK10575         25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRE  104 (265)
T ss_pred             EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHH
Confidence            46789999999999999999999999999999999999999999998865422111110   111111    12234444


Q ss_pred             ceeeeee-e----------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         138 EVGYSIR-F----------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       138 ~v~~~~~-~----------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      ++.+... .                      ......++.+..||+||+||++||+||+.+|++|||||   |++++|+.
T Consensus       105 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE---Pt~~LD~~  181 (265)
T PRK10575        105 LVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDE---PTSALDIA  181 (265)
T ss_pred             HHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHH
Confidence            4433210 0                      00001234556799999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         195 M-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       195 ~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      . ..+.+++....+ .+.+||++||+++++.++||++++|+ .|+.
T Consensus       182 ~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~-~G~i  226 (265)
T PRK10575        182 HQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALR-GGEM  226 (265)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCeE
Confidence            7 778888876643 47899999999999999999999998 6664

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.1e-30  Score=216.15  Aligned_cols=172  Identities=17%  Similarity=0.138  Sum_probs=130.6

Q ss_pred             hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhh-------hcccc
Q psy2071          63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEE-------MDCQL  135 (302)
Q Consensus        63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~  135 (302)
                      -.++++++++.+.+||+++|+||||+|||||++.++|.+.|++|++.++|.....+....++...+-.       +..++
T Consensus        13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv   92 (259)
T COG4559          13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTV   92 (259)
T ss_pred             cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEH
Confidence            34567899999999999999999999999999999999999999999999886655555444433221       22233


Q ss_pred             ccceeeeeeec---CC------------------CCccccccccCHHHHHHHhccccCCC------CCcEEEEcCCCCCC
Q psy2071         136 GQEVGYSIRFE---DC------------------SSPKTVLKYMTDGMLLREGMSDPMLE------NYQVILLDEAHERT  188 (302)
Q Consensus       136 ~~~v~~~~~~~---~~------------------~~~~~~~~~lS~G~~qr~~la~al~~------~p~lliLDE~~~p~  188 (302)
                      .+-|.+...-.   ..                  ....+.+..||||++|||.+||.|+.      ++++|+|||   ||
T Consensus        93 ~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDE---Pt  169 (259)
T COG4559          93 QEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDE---PT  169 (259)
T ss_pred             HHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecC---Cc
Confidence            33332221111   00                  01233455699999999999998754      456899999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++|+.. ..+.++.++....|..|+.+-||++.+..|||++++|+ .|+.
T Consensus       170 saLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~-~Grv  219 (259)
T COG4559         170 SALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLH-QGRV  219 (259)
T ss_pred             cccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeee-CCeE
Confidence            9999887 56777777777777888888999999999999999999 6764

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=1.9e-31  Score=229.73  Aligned_cols=166  Identities=13%  Similarity=0.081  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH---H-HHHHHhhhhhcccccccee
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA---M-SVAQRVSEEMDCQLGQEVG  140 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~v~  140 (302)
                      .+.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|........   + .+.+........++.+++.
T Consensus        25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~  104 (214)
T PRK13543         25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLH  104 (214)
T ss_pred             eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHH
Confidence            35789999999999999999999999999999999999999999998864321100   0 0001100011122333321


Q ss_pred             eee----------------eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071         141 YSI----------------RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK  203 (302)
Q Consensus       141 ~~~----------------~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~  203 (302)
                      +..                .+......++.+..||+||+||+++|++++.+|++|||||   |++++|+.. ..+.+++.
T Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~~LD~~~~~~l~~~l~  181 (214)
T PRK13543        105 FLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE---PYANLDLEGITLVNRMIS  181 (214)
T ss_pred             HHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHHHHHH
Confidence            110                0111112355667899999999999999999999999999   999999888 78888887


Q ss_pred             HcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         204 QRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       204 ~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      ...+.+.|++++|||.+++.++||+++++.
T Consensus       182 ~~~~~~~tiii~sH~~~~~~~~~~~i~~l~  211 (214)
T PRK13543        182 AHLRGGGAALVTTHGAYAAPPVRTRMLTLE  211 (214)
T ss_pred             HHHhCCCEEEEEecChhhhhhhcceEEEEe
Confidence            665567899999999999999999998886

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.96  E-value=2.6e-31  Score=231.40  Aligned_cols=168  Identities=17%  Similarity=0.188  Sum_probs=123.2

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc----cCCCEEEeecCchhhhHH-HHHHHhhhh------hcccc
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK----SVGAKAVACTQPRRVAAM-SVAQRVSEE------MDCQL  135 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~----~~G~~~i~~~~~~~~~~~-~~~~~~~~~------~~~~~  135 (302)
                      .+++++.|++|++++|+||||||||||+++|+|+++|    ++|++.++|.+....... .....+.+.      ...++
T Consensus         2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~   81 (230)
T TIGR02770         2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM   81 (230)
T ss_pred             ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence            4678899999999999999999999999999999998    899999988654221100 000011110      01122


Q ss_pred             ccceeee------------------eeecCC----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         136 GQEVGYS------------------IRFEDC----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       136 ~~~v~~~------------------~~~~~~----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      .+++.+.                  +.....    ...++.+..||+||+||++||+|++.+|++|||||   |++++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE---Pt~~LD~  158 (230)
T TIGR02770        82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE---PTTDLDV  158 (230)
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC---CccccCH
Confidence            1111110                  000011    11245667899999999999999999999999999   9999998


Q ss_pred             HH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         194 LM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       194 ~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .. ..+.+++.+..+ .+.||+++||+++++..+||++++|+ .|+.
T Consensus       159 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i  204 (230)
T TIGR02770       159 VNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMD-DGRI  204 (230)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            87 778888876544 47899999999999999999999998 6653

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>KOG0920|consensus

Probab=99.96  E-value=2e-29  Score=248.55  Aligned_cols=206  Identities=42%  Similarity=0.733  Sum_probs=193.1

Q ss_pred             CCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCchhhhHH
Q psy2071          43 TGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQPRRVAAM  121 (302)
Q Consensus        43 ~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~~~~~~~  121 (302)
                      .....+.+|.++...|.+||+|..++.|...|+++++++|.|++||||||++++.......++| .+.|.|+||||++++
T Consensus       154 ~~~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAI  233 (924)
T KOG0920|consen  154 SEPKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAI  233 (924)
T ss_pred             chhhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHH
Confidence            3446668899999999999999999999999999999999999999999999999876554444 677999999999999


Q ss_pred             HHHHHhhhhhccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHH
Q psy2071         122 SVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEV  201 (302)
Q Consensus       122 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~l  201 (302)
                      +++.+|+.+.+.+.+..|||.++.+.....++++.+++.|.+.|.......+.+..+||+||+||+....|.++..++.+
T Consensus       234 svAeRVa~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~l  313 (924)
T KOG0920|consen  234 SVAERVAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDL  313 (924)
T ss_pred             HHHHHHHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHH
Confidence            99999999999999999999999999888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcCCccceeecCC
Q psy2071         202 IKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPE  248 (302)
Q Consensus       202 l~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~  248 (302)
                      +..+.+.++++|+||-|.+.+..||..+++|+++|+.|||..||.++
T Consensus       314 L~~~p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLED  360 (924)
T KOG0920|consen  314 LPRNPDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLED  360 (924)
T ss_pred             hhhCCCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHH
Confidence            99999999999999999999999999999999999999999998765

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.96  E-value=2.5e-31  Score=236.44  Aligned_cols=169  Identities=17%  Similarity=0.199  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhhh------hccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSEE------MDCQLG  136 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~~------~~~~~~  136 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+...........   .+.+.      ...++.
T Consensus        28 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~  107 (267)
T PRK15112         28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRIS  107 (267)
T ss_pred             eeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHH
Confidence            578999999999999999999999999999999999999999999886532111000000   00110      011111


Q ss_pred             cceeee-------------------eeecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         137 QEVGYS-------------------IRFEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       137 ~~v~~~-------------------~~~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +++.+.                   +.....  ...+..+..||+||+||++||+||+.+|++|||||   |++++|+..
T Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---Pt~~LD~~~  184 (267)
T PRK15112        108 QILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADE---ALASLDMSM  184 (267)
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcC---CcccCCHHH
Confidence            111110                   000011  11234567899999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+++.+..+ .+.|||++||+++.+..+||++++|+ .|+.
T Consensus       185 ~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~-~G~i  228 (267)
T PRK15112        185 RSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMH-QGEV  228 (267)
T ss_pred             HHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence             778888877644 47899999999999999999999998 6654

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.96  E-value=1.4e-31  Score=234.87  Aligned_cols=169  Identities=14%  Similarity=0.058  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc--cccCCCEEEeecCchhhhH--------HHHHHHhhhhhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY--SKSVGAKAVACTQPRRVAA--------MSVAQRVSEEMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~--~~~~G~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~  135 (302)
                      +++++++.|++|++++|+||||||||||+++|+|++  +|++|++.+.|.+......        ..+.+........++
T Consensus        15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~   94 (243)
T TIGR01978        15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSN   94 (243)
T ss_pred             EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCH
Confidence            578999999999999999999999999999999995  7899999998865422110        001111111111122


Q ss_pred             ccceeee-------------------------eeecCCC--Ccccccc-ccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         136 GQEVGYS-------------------------IRFEDCS--SPKTVLK-YMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       136 ~~~v~~~-------------------------~~~~~~~--~~~~~~~-~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      .+++.+.                         +......  ..++.+. .||+||+||++||++|+.+|++|||||   |
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE---P  171 (243)
T TIGR01978        95 LEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDE---I  171 (243)
T ss_pred             HHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecC---C
Confidence            2211110                         0000111  1234444 499999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhh-ccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQY-FDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~-~d~~~~l~i~g~~  238 (302)
                      ++++|+.. ..+.+++....+.+.|||++|||.+.+..+ ||++++|+ .|+.
T Consensus       172 t~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~-~G~i  223 (243)
T TIGR01978       172 DSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLL-DGRI  223 (243)
T ss_pred             cccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEe-CCEE
Confidence            99999887 778888887665678999999999999998 89999998 6653

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.96  E-value=3.7e-31  Score=227.83  Aligned_cols=167  Identities=16%  Similarity=0.194  Sum_probs=126.4

Q ss_pred             HHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-----HHHHHHhhhhhccccccceeee
Q psy2071          68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-----MSVAQRVSEEMDCQLGQEVGYS  142 (302)
Q Consensus        68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~  142 (302)
                      .++++.+++|++++|+||||||||||+++|+|+++|++|++.+.|.+......     ..+.+........++.+++.+.
T Consensus        15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~   94 (213)
T TIGR01277        15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLG   94 (213)
T ss_pred             eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhH
Confidence            57899999999999999999999999999999999999999998865422110     0111111111233455554432


Q ss_pred             eeec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHH
Q psy2071         143 IRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVI  202 (302)
Q Consensus       143 ~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll  202 (302)
                      ....                   .....++.+..||+||+||++||++++.+|+++||||   |++++|+.. ..+.+++
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE---Pt~~LD~~~~~~~~~~l  171 (213)
T TIGR01277        95 LHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE---PFSALDPLLREEMLALV  171 (213)
T ss_pred             hhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CCccCCHHHHHHHHHHH
Confidence            1100                   0011244566799999999999999999999999999   999999887 7788888


Q ss_pred             HHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         203 KQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       203 ~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ....+ .+.|++++||+.+++.++||++++|+ .|+.
T Consensus       172 ~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~-~g~i  207 (213)
T TIGR01277       172 KQLCSERQRTLLMVTHHLSDARAIASQIAVVS-QGKI  207 (213)
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEE-CCeE
Confidence            76543 47899999999999999999999998 6654

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.96  E-value=2.3e-31  Score=232.56  Aligned_cols=167  Identities=19%  Similarity=0.262  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--HHHHHHhhh----hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--MSVAQRVSE----EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~v  139 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|.+.++|.+......  ......+.+    ....++.+++
T Consensus        16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l   95 (236)
T TIGR03864        16 ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNL   95 (236)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHH
Confidence            5788999999999999999999999999999999999999999998865321110  000111111    1122333333


Q ss_pred             eeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         140 GYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       140 ~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                      .+...                   +......++.+..||+||+||++||+||+.+|+++||||   |++++|+.. ..+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE---P~~~LD~~~~~~l~  172 (236)
T TIGR03864        96 RYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDE---PTVGLDPASRAAIV  172 (236)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CccCCCHHHHHHHH
Confidence            22110                   000111245567799999999999999999999999999   999999887 7788


Q ss_pred             HHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         200 EVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       200 ~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +++.... +.+.|++++||+.+.+.. ||++++|+ .|+
T Consensus       173 ~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~-~G~  209 (236)
T TIGR03864       173 AHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLH-RGR  209 (236)
T ss_pred             HHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEe-CCe
Confidence            8887664 357899999999999975 99999998 665

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.96  E-value=2.1e-31  Score=230.94  Aligned_cols=169  Identities=17%  Similarity=0.174  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh---HHHHHHHhhhhhccccccceeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA---AMSVAQRVSEEMDCQLGQEVGYS  142 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~  142 (302)
                      +++++++.+++|++++|+|+||||||||+++|+|+++|++|.+.+.|.......   ...+.+........++.+++.+.
T Consensus        15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~   94 (223)
T TIGR03740        15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVH   94 (223)
T ss_pred             EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHH
Confidence            578899999999999999999999999999999999999999998875432110   00001110011112333333211


Q ss_pred             ee---------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcC
Q psy2071         143 IR---------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRA  206 (302)
Q Consensus       143 ~~---------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~  206 (302)
                      ..               +......+..+..||+||+||+++|+|++.+|+++||||   |++++|+.. ..+.+++.+..
T Consensus        95 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDE---P~~~LD~~~~~~l~~~L~~~~  171 (223)
T TIGR03740        95 TTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDE---PTNGLDPIGIQELRELIRSFP  171 (223)
T ss_pred             HHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC---CccCCCHHHHHHHHHHHHHHH
Confidence            10               000111244567799999999999999999999999999   999999887 78888888765


Q ss_pred             CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         207 DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       207 ~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +.+.+++++|||.+++.++||++++|+ .|+.
T Consensus       172 ~~~~tiii~sH~~~~~~~~~d~i~~l~-~g~i  202 (223)
T TIGR03740       172 EQGITVILSSHILSEVQQLADHIGIIS-EGVL  202 (223)
T ss_pred             HCCCEEEEEcCCHHHHHHhcCEEEEEe-CCEE
Confidence            568899999999999999999999998 6664

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.96  E-value=2.9e-31  Score=231.93  Aligned_cols=172  Identities=15%  Similarity=0.173  Sum_probs=126.4

Q ss_pred             hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--HHHHHHHhh-----hhhcccc
Q psy2071          63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--AMSVAQRVS-----EEMDCQL  135 (302)
Q Consensus        63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--~~~~~~~~~-----~~~~~~~  135 (302)
                      ...+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.......  .......+.     .....++
T Consensus        33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv  112 (236)
T cd03267          33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV  112 (236)
T ss_pred             CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence            334689999999999999999999999999999999999999999999875421100  000000000     0111222


Q ss_pred             ccceeeee------------------ee-cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         136 GQEVGYSI------------------RF-EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       136 ~~~v~~~~------------------~~-~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+++.+..                  .. ......++.+..||+||+||+++|++|+.+|++|||||   |++++|+.. 
T Consensus       113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE---Pt~~LD~~~~  189 (236)
T cd03267         113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDE---PTIGLDVVAQ  189 (236)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CCCCCCHHHH
Confidence            22221110                  00 00112245667799999999999999999999999999   999999887 


Q ss_pred             HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 ~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ..+.+++....+ .+.|||++||+.+++..+||++++|+ .|+.
T Consensus       190 ~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~-~G~i  232 (236)
T cd03267         190 ENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID-KGRL  232 (236)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe-CCEE
Confidence            778888876543 47899999999999999999999998 6653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.96  E-value=3e-30  Score=214.82  Aligned_cols=129  Identities=19%  Similarity=0.221  Sum_probs=109.5

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeec
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFE  146 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  146 (302)
                      .+++ +.+++|++++|+||||||||||+++|+|+++|++|++.+.|..                        ++|..+..
T Consensus        16 l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------------------i~~~~q~~   70 (177)
T cd03222          16 LVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------------------PVYKPQYI   70 (177)
T ss_pred             EccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------------------EEEEcccC
Confidence            4443 6899999999999999999999999999999999999987642                        22222110


Q ss_pred             CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCC-cEEEEEEecCHHHHHh
Q psy2071         147 DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADL-KLVIMSATLDAGKFQQ  224 (302)
Q Consensus       147 ~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~-~~~ii~~thd~~~~~~  224 (302)
                                .||+||+||+++|++++.+|+++||||   |++++|+.. ..+.+++.+..+. +.+++++||+++.+..
T Consensus        71 ----------~LSgGq~qrv~laral~~~p~lllLDE---Pts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~  137 (177)
T cd03222          71 ----------DLSGGELQRVAIAAALLRNATFYLFDE---PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY  137 (177)
T ss_pred             ----------CCCHHHHHHHHHHHHHhcCCCEEEEEC---CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence                      199999999999999999999999999   999999887 7777777765444 4899999999999999


Q ss_pred             hccCCCeee
Q psy2071         225 YFDNAPLMN  233 (302)
Q Consensus       225 ~~d~~~~l~  233 (302)
                      +||++++|+
T Consensus       138 ~~d~i~~l~  146 (177)
T cd03222         138 LSDRIHVFE  146 (177)
T ss_pred             hCCEEEEEc
Confidence            999999987

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.96  E-value=1.5e-31  Score=236.01  Aligned_cols=169  Identities=19%  Similarity=0.188  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-------------HHHHHHH---hh-
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-------------AMSVAQR---VS-  128 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-------------~~~~~~~---~~-  128 (302)
                      +.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.......             .......   +. 
T Consensus        15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q   94 (252)
T TIGR03005        15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQ   94 (252)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEec
Confidence            578999999999999999999999999999999999999999999886542110             0000111   11 


Q ss_pred             ---hhhccccccceeeeee--------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCC
Q psy2071         129 ---EEMDCQLGQEVGYSIR--------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH  185 (302)
Q Consensus       129 ---~~~~~~~~~~v~~~~~--------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~  185 (302)
                         .....++.+++.+...                    +......+..+..||+||+||++||+||+.+|++|||||  
T Consensus        95 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE--  172 (252)
T TIGR03005        95 SFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDE--  172 (252)
T ss_pred             CcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeC--
Confidence               1112344444432100                    000011234556799999999999999999999999999  


Q ss_pred             CCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         186 ERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       186 ~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       |++++|+.. ..+.+++.+..+ .+.|+|++||+++.+..+||++++|+ .|+.
T Consensus       173 -P~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~-~G~i  225 (252)
T TIGR03005       173 -VTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFD-KGRI  225 (252)
T ss_pred             -CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence             999999887 778888876544 48899999999999999999999998 7764

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.96  E-value=3.9e-31  Score=232.68  Aligned_cols=168  Identities=18%  Similarity=0.193  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-----CCCEEEeecCchhh--hH---HHHHHHhhhh---hc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-----VGAKAVACTQPRRV--AA---MSVAQRVSEE---MD  132 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-----~G~~~i~~~~~~~~--~~---~~~~~~~~~~---~~  132 (302)
                      +.+++++.|++|++++|+|+||||||||+++|+|+++|+     +|++.++|.+....  ..   ......+.+.   ..
T Consensus        16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~   95 (247)
T TIGR00972        16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP   95 (247)
T ss_pred             eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC
Confidence            578999999999999999999999999999999999988     99999988654221  00   0000111111   11


Q ss_pred             cccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         133 CQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       133 ~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      .++.+++.+.....                   ..     ...++.+..||+||+||++||+||+.+|++|||||   |+
T Consensus        96 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE---Pt  172 (247)
T TIGR00972        96 MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDE---PT  172 (247)
T ss_pred             CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---Cc
Confidence            23333332211000                   01     11245567899999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++|+.. ..+.+++....+ +.|+|++||+++.+..+||++++|+ .|+.
T Consensus       173 ~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~-~G~i  221 (247)
T TIGR00972       173 SALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFY-DGEL  221 (247)
T ss_pred             ccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence            9999887 778888887655 3799999999999999999999998 6653

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.96  E-value=3.7e-31  Score=227.96  Aligned_cols=164  Identities=16%  Similarity=0.122  Sum_probs=123.0

Q ss_pred             HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh----hHHHHH---HHhhh----hhcccccc
Q psy2071          69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV----AAMSVA---QRVSE----EMDCQLGQ  137 (302)
Q Consensus        69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~----~~~~~~---~~~~~----~~~~~~~~  137 (302)
                      ++++.|++ ++++|+|+||||||||+++|+|+++|++|++.+.|.+....    ......   ..+.+    ....++.+
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~   94 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE   94 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence            89999999 99999999999999999999999999999999988653210    000000   11111    11234444


Q ss_pred             ceeeeeee-----------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         138 EVGYSIRF-----------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       138 ~v~~~~~~-----------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                      ++.+....                 ......++.+..||+||+||++||+|++.+|+++||||   |++++|+.. ..+.
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---Pt~~LD~~~~~~l~  171 (214)
T cd03297          95 NLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDE---PFSALDRALRLQLL  171 (214)
T ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHHHHH
Confidence            43321110                 00011244567799999999999999999999999999   999999887 7788


Q ss_pred             HHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         200 EVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       200 ~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +++....+ .+.|+|++||+.+++..+||++++|+ .|+
T Consensus       172 ~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~  209 (214)
T cd03297         172 PELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVME-DGR  209 (214)
T ss_pred             HHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEE-CCE
Confidence            88876644 37899999999999999999999998 665

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.3e-31  Score=243.27  Aligned_cols=169  Identities=15%  Similarity=0.155  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc----ccCCCEEEeecCchhhhHHHH-------HHHhhhh----
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS----KSVGAKAVACTQPRRVAAMSV-------AQRVSEE----  130 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~----~~~G~~~i~~~~~~~~~~~~~-------~~~~~~~----  130 (302)
                      +++++++.|++||+++|+|+||||||||+++|+|+++    |++|++.++|.+.........       ...+.+.    
T Consensus        22 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~  101 (330)
T PRK15093         22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSC  101 (330)
T ss_pred             EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchh
Confidence            5789999999999999999999999999999999986    578999998865422111000       0111111    


Q ss_pred             --hccccccceeeee------------------------eecCCC----CccccccccCHHHHHHHhccccCCCCCcEEE
Q psy2071         131 --MDCQLGQEVGYSI------------------------RFEDCS----SPKTVLKYMTDGMLLREGMSDPMLENYQVIL  180 (302)
Q Consensus       131 --~~~~~~~~v~~~~------------------------~~~~~~----~~~~~~~~lS~G~~qr~~la~al~~~p~lli  180 (302)
                        ...++.+++.+.+                        ......    ..++....|||||+||++||+||+.+|++||
T Consensus       102 l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~lli  181 (330)
T PRK15093        102 LDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLI  181 (330)
T ss_pred             cCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEE
Confidence              1122222221100                        000010    1134556799999999999999999999999


Q ss_pred             EcCCCCCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         181 LDEAHERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       181 LDE~~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +||   ||+++|+.. ..+.+++.+..+ .+.|+|++|||++.+.++||++++|+ .|+.
T Consensus       182 lDE---Pts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~-~G~i  237 (330)
T PRK15093        182 ADE---PTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLY-CGQT  237 (330)
T ss_pred             EeC---CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence            999   999999887 778888877654 48999999999999999999999998 5654

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.96  E-value=1.2e-30  Score=251.03  Aligned_cols=169  Identities=12%  Similarity=0.140  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhhh-----------
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSEE-----------  130 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~~-----------  130 (302)
                      .++++++++|++|++++|+||||||||||+++|+|+++|++|.+.+.+.............   .+.+.           
T Consensus        17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~   96 (490)
T PRK10938         17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGED   96 (490)
T ss_pred             eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchh
Confidence            3689999999999999999999999999999999999999999988775432111110011   11110           


Q ss_pred             -hccccccceeee----------e-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071         131 -MDCQLGQEVGYS----------I-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV  197 (302)
Q Consensus       131 -~~~~~~~~v~~~----------~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~  197 (302)
                       ...++.+++...          + .+......++.+..|||||+||++||+||+.+|++|||||   ||+++|+.. ..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE---Pt~~LD~~~~~~  173 (490)
T PRK10938         97 DTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDE---PFDGLDVASRQQ  173 (490)
T ss_pred             hccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC---CcccCCHHHHHH
Confidence             012233322110          0 0111112356678899999999999999999999999999   999999888 78


Q ss_pred             HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         198 LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       198 l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +.+++....+.+.|||++|||++.+.++||++++|+ .|+
T Consensus       174 l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~-~G~  212 (490)
T PRK10938        174 LAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLA-DCT  212 (490)
T ss_pred             HHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEE-CCE
Confidence            888888766568899999999999999999999998 554

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=5.1e-31  Score=229.84  Aligned_cols=166  Identities=13%  Similarity=0.170  Sum_probs=125.6

Q ss_pred             HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhccccccceeeee
Q psy2071          69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEVGYSI  143 (302)
Q Consensus        69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~  143 (302)
                      ++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.......     ...+.+........++.+++.+..
T Consensus        17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~   96 (232)
T PRK10771         17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL   96 (232)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence            789999999999999999999999999999999999999999886532211     001111111112235555554332


Q ss_pred             eec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071         144 RFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK  203 (302)
Q Consensus       144 ~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~  203 (302)
                      ...                   .....++.+..||+||+||++||+|++.+|+++||||   |++++|+.. ..+.+++.
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---P~~gLD~~~~~~~~~~l~  173 (232)
T PRK10771         97 NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDE---PFSALDPALRQEMLTLVS  173 (232)
T ss_pred             ccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHHHHHH
Confidence            110                   0001234556799999999999999999999999999   999999887 77888887


Q ss_pred             HcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         204 QRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       204 ~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ... +.+.|+|++||+.+++.++||++++|+ .|+.
T Consensus       174 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~g~i  208 (232)
T PRK10771        174 QVCQERQLTLLMVSHSLEDAARIAPRSLVVA-DGRI  208 (232)
T ss_pred             HHHHhcCCEEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence            654 347899999999999999999999998 6664

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.96  E-value=8.7e-31  Score=223.33  Aligned_cols=158  Identities=16%  Similarity=0.144  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc--ccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE--YSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSI  143 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~--~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  143 (302)
                      +.+++++.+++|++++|+|+||||||||+++|+|+  +.|++|++.++|.+...........           ..++|..
T Consensus        15 ~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~-----------~~i~~v~   83 (200)
T cd03217          15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERAR-----------LGIFLAF   83 (200)
T ss_pred             eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhh-----------CcEEEee
Confidence            57899999999999999999999999999999999  4799999999987643321110000           0122211


Q ss_pred             eecCC----C---CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEE
Q psy2071         144 RFEDC----S---SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSA  215 (302)
Q Consensus       144 ~~~~~----~---~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~  215 (302)
                      +....    .   ........||+||+||+++|++++.+|+++||||   |++++|... ..+.+++.+..+.+.|++++
T Consensus        84 q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDE---Pt~~LD~~~~~~l~~~L~~~~~~~~tiii~  160 (200)
T cd03217          84 QYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDE---PDSGLDIDALRLVAEVINKLREEGKSVLII  160 (200)
T ss_pred             cChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeC---CCccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            11000    0   0012235799999999999999999999999999   999999877 77888887765557899999


Q ss_pred             ecCHHHHHh-hccCCCeeeecCcC
Q psy2071         216 TLDAGKFQQ-YFDNAPLMNVPGRT  238 (302)
Q Consensus       216 thd~~~~~~-~~d~~~~l~i~g~~  238 (302)
                      ||+++.+.. +||++++|+ .|+.
T Consensus       161 sh~~~~~~~~~~d~i~~l~-~G~i  183 (200)
T cd03217         161 THYQRLLDYIKPDRVHVLY-DGRI  183 (200)
T ss_pred             ecCHHHHHHhhCCEEEEEE-CCEE
Confidence            999999988 799999998 6653

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.96  E-value=2.6e-31  Score=235.34  Aligned_cols=170  Identities=17%  Similarity=0.215  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC-----chhhhHHH-------HHHHhhhhh-
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ-----PRRVAAMS-------VAQRVSEEM-  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~-----~~~~~~~~-------~~~~~~~~~-  131 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+     ........       ...++.+.. 
T Consensus        20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~   99 (258)
T PRK11701         20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPR   99 (258)
T ss_pred             eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcc
Confidence            35789999999999999999999999999999999999999999998865     32111000       001111111 


Q ss_pred             -----ccccccceeee-------------------eeecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCC
Q psy2071         132 -----DCQLGQEVGYS-------------------IRFEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH  185 (302)
Q Consensus       132 -----~~~~~~~v~~~-------------------~~~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~  185 (302)
                           ..++.+++.+.                   +.....  ...++.+..||+||+||++||+||+.+|++|||||  
T Consensus       100 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE--  177 (258)
T PRK11701        100 DGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE--  177 (258)
T ss_pred             cccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC--
Confidence                 11222222110                   000011  12245677899999999999999999999999999  


Q ss_pred             CCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         186 ERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       186 ~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       |++++|+.. ..+.++++...+ .+.|||++||+.+.+..+||++++|+ .|+.
T Consensus       178 -Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~-~g~i  230 (258)
T PRK11701        178 -PTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMK-QGRV  230 (258)
T ss_pred             -CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence             999999877 778888776543 47899999999999999999999998 6654

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3.7e-31  Score=236.35  Aligned_cols=169  Identities=15%  Similarity=0.162  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh--hhHHHHH---HHhhh-----hhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR--VAAMSVA---QRVSE-----EMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~--~~~~~~~---~~~~~-----~~~~~~  135 (302)
                      +.+++++.|++||+++|+|+||||||||+++|+|+++|++|++.++|.....  .......   .++.+     ....++
T Consensus        17 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv   96 (275)
T PRK13639         17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTV   96 (275)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccH
Confidence            5788999999999999999999999999999999999999999998865321  0000001   11111     112344


Q ss_pred             ccceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         136 GQEVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       136 ~~~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+++.+...                   +......++.+..||+||+||++||+||+.+|++|||||   |++++|+.. 
T Consensus        97 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE---Pt~gLD~~~~  173 (275)
T PRK13639         97 EEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDE---PTSGLDPMGA  173 (275)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCcCCCHHHH
Confidence            444432110                   000012345667899999999999999999999999999   999999887 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ..+.+++....+.+.||+++|||++.+.++||++++|+ .|+.
T Consensus       174 ~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~-~G~i  215 (275)
T PRK13639        174 SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMS-DGKI  215 (275)
T ss_pred             HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence            77888888765558999999999999999999999998 5653

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.96  E-value=3.1e-31  Score=234.50  Aligned_cols=170  Identities=16%  Similarity=0.159  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhhh----hhcccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVSE----EMDCQLGQ  137 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~~----~~~~~~~~  137 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+.........   ..++.+    ....++.+
T Consensus        15 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e   94 (256)
T TIGR03873        15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRD   94 (256)
T ss_pred             EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHH
Confidence            36789999999999999999999999999999999999999999998865432111110   111111    12234444


Q ss_pred             ceeeeee-----------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         138 EVGYSIR-----------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       138 ~v~~~~~-----------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      ++.+...                       +......++.+..||+||+||++||+|++.+|+++||||   |++++|+.
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE---Pt~~LD~~  171 (256)
T TIGR03873        95 VVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDE---PTNHLDVR  171 (256)
T ss_pred             HHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---ccccCCHH
Confidence            4432110                       000011234556799999999999999999999999999   99999987


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      . ..+.+++.+..+.+.|||++||+++.+.++||++++|+ .|+.
T Consensus       172 ~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i  215 (256)
T TIGR03873       172 AQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLD-GGRV  215 (256)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe-CCCE
Confidence            7 77888888766557899999999999999999999998 6654

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=7.4e-31  Score=231.33  Aligned_cols=168  Identities=14%  Similarity=0.128  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhhhHHHH-------HHHhhhhhcc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRVAAMSV-------AQRVSEEMDC  133 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~~~~~~-------~~~~~~~~~~  133 (302)
                      +.+++++.|++|++++|+|+||||||||+++|+|+++|     ++|++.++|...........       .+........
T Consensus        18 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~   97 (250)
T PRK14247         18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNL   97 (250)
T ss_pred             eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCC
Confidence            57899999999999999999999999999999999874     68999998865322111110       1111111223


Q ss_pred             ccccceeeeeeec--------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         134 QLGQEVGYSIRFE--------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       134 ~~~~~v~~~~~~~--------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      ++.+++.+.....                    ..     ...++.+..||+||+||+++|+||+.+|++|||||   |+
T Consensus        98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE---P~  174 (250)
T PRK14247         98 SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADE---PT  174 (250)
T ss_pred             cHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CC
Confidence            4444443221100                    00     01245567899999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++|+.. ..+.+++....+ +.|++++||+++++.++||++++|+ .|+.
T Consensus       175 ~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i  223 (250)
T PRK14247        175 ANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYVAFLY-KGQI  223 (250)
T ss_pred             ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEE-CCeE
Confidence            9999887 778888887654 7899999999999999999999998 6654

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.96  E-value=2e-30  Score=226.99  Aligned_cols=167  Identities=17%  Similarity=0.207  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~v  139 (302)
                      +++++++.+++|++++|+|+||||||||+++|+|+++|++|++.++|.............   .+.+   ....++.+++
T Consensus        18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l   97 (238)
T cd03249          18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENI   97 (238)
T ss_pred             ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHh
Confidence            578899999999999999999999999999999999999999999886532211100000   0000   1112444444


Q ss_pred             eeeeeec------------C------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFE------------D------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~------------~------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+.....            .            ....+..+..||+||+||++||++|+.+|++|||||   |++++|+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---P~~gLD~~~  174 (238)
T cd03249          98 RYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDE---ATSALDAES  174 (238)
T ss_pred             hccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeC---ccccCCHHH
Confidence            3321100            0            001123456799999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+++.... .+.+++++||+.+++. +||++++|+ .|+.
T Consensus       175 ~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d~v~~l~-~G~i  215 (238)
T cd03249         175 EKLVQEALDRAM-KGRTTIVIAHRLSTIR-NADLIAVLQ-NGQV  215 (238)
T ss_pred             HHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hCCEEEEEE-CCEE
Confidence             78888888766 5889999999999997 899999998 6764

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.96  E-value=7.1e-31  Score=217.37  Aligned_cols=148  Identities=14%  Similarity=0.183  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.+.  +.++.......   ....++.+++.+.   
T Consensus        16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~--~~i~~~~q~~~---~~~~tv~~nl~~~---   87 (166)
T cd03223          16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--EDLLFLPQRPY---LPLGTLREQLIYP---   87 (166)
T ss_pred             eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC--ceEEEECCCCc---cccccHHHHhhcc---
Confidence            578899999999999999999999999999999999999999988653  11111111110   1123445554432   


Q ss_pred             cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071         146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ  224 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~  224 (302)
                              ....||+||+||+++|+|++.+|+++||||   |++++|+.. ..+.+++...   +.|++++||+.+.. .
T Consensus        88 --------~~~~LS~G~~~rv~laral~~~p~~lllDE---Pt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~~-~  152 (166)
T cd03223          88 --------WDDVLSGGEQQRLAFARLLLHKPKFVFLDE---ATSALDEESEDRLYQLLKEL---GITVISVGHRPSLW-K  152 (166)
T ss_pred             --------CCCCCCHHHHHHHHHHHHHHcCCCEEEEEC---CccccCHHHHHHHHHHHHHh---CCEEEEEeCChhHH-h
Confidence                    357899999999999999999999999999   999999877 7777887765   57999999999865 6


Q ss_pred             hccCCCeeeecC
Q psy2071         225 YFDNAPLMNVPG  236 (302)
Q Consensus       225 ~~d~~~~l~i~g  236 (302)
                      +||++++|+-+|
T Consensus       153 ~~d~i~~l~~~~  164 (166)
T cd03223         153 FHDRVLDLDGEG  164 (166)
T ss_pred             hCCEEEEEcCCC
Confidence            999999987443

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.96  E-value=2.2e-31  Score=231.25  Aligned_cols=170  Identities=17%  Similarity=0.178  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc---ccCCCEEEeecCchhhhHH----HHHHHhhhhhcccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS---KSVGAKAVACTQPRRVAAM----SVAQRVSEEMDCQLGQ  137 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~---~~~G~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~  137 (302)
                      .+.+++++.|++|++++|+||||||||||+++|+|+++   |++|++.+.|.+.......    .+.+........++.+
T Consensus        21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~e  100 (226)
T cd03234          21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRE  100 (226)
T ss_pred             ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHH
Confidence            46889999999999999999999999999999999999   8999999988653211000    0001101111223333


Q ss_pred             ceeeeee-----------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         138 EVGYSIR-----------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       138 ~v~~~~~-----------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      ++.+...                       +......++.+..||+||+||+++|++|+.+|+++||||   |++++|+.
T Consensus       101 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDE---P~~gLD~~  177 (226)
T cd03234         101 TLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDE---PTSGLDSF  177 (226)
T ss_pred             HHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeC---CCcCCCHH
Confidence            3322100                       000011234567799999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCH-HHHHhhccCCCeeeecCcC
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDA-GKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~-~~~~~~~d~~~~l~i~g~~  238 (302)
                      . ..+.+++.+..+.+.|++++||+. +++.++||++++|+ .|+.
T Consensus       178 ~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~-~G~i  222 (226)
T cd03234         178 TALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLS-SGEI  222 (226)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEe-CCEE
Confidence            7 778888877655578999999998 68999999999998 6653

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.96  E-value=3e-30  Score=208.62  Aligned_cols=128  Identities=23%  Similarity=0.296  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +.+++++.+++|++++|+|+||||||||+++|+|+++|++|++.+++.                       ..++|..+ 
T Consensus        15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------------------~~i~~~~~-   70 (144)
T cd03221          15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------------------VKIGYFEQ-   70 (144)
T ss_pred             EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------------------EEEEEEcc-
Confidence            467889999999999999999999999999999999999999998762                       12333322 


Q ss_pred             cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071         146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ  224 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~  224 (302)
                                  ||+||+||++||+||+.+|+++||||   |++++|... ..+.+++++.   +.|++++||+.+.+..
T Consensus        71 ------------lS~G~~~rv~laral~~~p~illlDE---P~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~~~  132 (144)
T cd03221          71 ------------LSGGEKMRLALAKLLLENPNLLLLDE---PTNHLDLESIEALEEALKEY---PGTVILVSHDRYFLDQ  132 (144)
T ss_pred             ------------CCHHHHHHHHHHHHHhcCCCEEEEeC---CccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHH
Confidence                        99999999999999999999999999   999999877 7788888765   4689999999999999


Q ss_pred             hccCCCeeeecC
Q psy2071         225 YFDNAPLMNVPG  236 (302)
Q Consensus       225 ~~d~~~~l~i~g  236 (302)
                      +||++++|+ .|
T Consensus       133 ~~d~v~~l~-~g  143 (144)
T cd03221         133 VATKIIELE-DG  143 (144)
T ss_pred             hCCEEEEEe-CC
Confidence            999999987 44

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.96  E-value=8.9e-31  Score=252.45  Aligned_cols=168  Identities=15%  Similarity=0.115  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--------HHHHHHhhhhhcccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--------MSVAQRVSEEMDCQLGQ  137 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  137 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|........        ..+.+........++.+
T Consensus        19 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e   98 (501)
T PRK10762         19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAE   98 (501)
T ss_pred             EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHH
Confidence            5789999999999999999999999999999999999999999998865321110        01111111122345556


Q ss_pred             ceeeeeeec-----------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         138 EVGYSIRFE-----------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       138 ~v~~~~~~~-----------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      ++.+.....                       .....++.+..||+||+||++||+||+.+|++|||||   ||+++|+.
T Consensus        99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE---Pt~~LD~~  175 (501)
T PRK10762         99 NIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDE---PTDALTDT  175 (501)
T ss_pred             HhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcCCCCHH
Confidence            554432110                       0011244567899999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      . ..+.+++....+.+.|||++|||++++..+||++++|+ .|+
T Consensus       176 ~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~-~G~  218 (501)
T PRK10762        176 ETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFR-DGQ  218 (501)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEe-CCE
Confidence            7 77888887765568899999999999999999999998 554

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.96  E-value=5.9e-31  Score=254.08  Aligned_cols=169  Identities=14%  Similarity=0.085  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH--------HHHHHhhhhhccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM--------SVAQRVSEEMDCQLG  136 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~  136 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.........        .+.+........++.
T Consensus        25 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~  104 (510)
T PRK15439         25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVK  104 (510)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHH
Confidence            357899999999999999999999999999999999999999999988654321110        111111112234555


Q ss_pred             cceeeeeee---------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH
Q psy2071         137 QEVGYSIRF---------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE  200 (302)
Q Consensus       137 ~~v~~~~~~---------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~  200 (302)
                      +++.+....               ......++.+..|||||+||++||+||+.+|++|||||   ||+++|+.. ..+.+
T Consensus       105 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE---Pt~~LD~~~~~~l~~  181 (510)
T PRK15439        105 ENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE---PTASLTPAETERLFS  181 (510)
T ss_pred             HHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC---CCCCCCHHHHHHHHH
Confidence            555443211               00112345677899999999999999999999999999   999999887 77888


Q ss_pred             HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +++...+.|.+||++|||++.+..+||++++|+ .|+
T Consensus       182 ~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~-~G~  217 (510)
T PRK15439        182 RIRELLAQGVGIVFISHKLPEIRQLADRISVMR-DGT  217 (510)
T ss_pred             HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence            888766568899999999999999999999998 554

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.96  E-value=6.4e-31  Score=224.36  Aligned_cols=163  Identities=14%  Similarity=0.071  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh----hhccccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE----EMDCQLGQE  138 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~  138 (302)
                      +.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+...... .....   +.+    ....++.++
T Consensus        15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~   93 (201)
T cd03231          15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRD-SIARGLLYLGHAPGIKTTLSVLEN   93 (201)
T ss_pred             eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccH-HhhhheEEeccccccCCCcCHHHH
Confidence            5789999999999999999999999999999999999999999998865421110 11111   111    112344444


Q ss_pred             eeeeeee-------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHH
Q psy2071         139 VGYSIRF-------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQ  204 (302)
Q Consensus       139 v~~~~~~-------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~  204 (302)
                      +.+....             ......++.+..||+||+||+++|+||+.+|++|||||   |++++|+.. ..+.+++..
T Consensus        94 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE---Pt~~LD~~~~~~l~~~l~~  170 (201)
T cd03231          94 LRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDE---PTTALDKAGVARFAEAMAG  170 (201)
T ss_pred             HHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCCCCHHHHHHHHHHHHH
Confidence            4332110             00012345667899999999999999999999999999   999999887 778888876


Q ss_pred             cCCCcEEEEEEecCHHHHHhhccCCCee
Q psy2071         205 RADLKLVIMSATLDAGKFQQYFDNAPLM  232 (302)
Q Consensus       205 ~~~~~~~ii~~thd~~~~~~~~d~~~~l  232 (302)
                      ..+.+.|++++||+...+..+|++++++
T Consensus       171 ~~~~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         171 HCARGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             HHhCCCEEEEEecCchhhhhccceeEec
Confidence            6555789999999999999999998765

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.96  E-value=2.4e-30  Score=225.86  Aligned_cols=167  Identities=16%  Similarity=0.189  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~v  139 (302)
                      +.+++++.+++|++++|+||||||||||+++|+|+++|++|++.++|.............   .+.+   .+..++.+++
T Consensus        17 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl   96 (234)
T cd03251          17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENI   96 (234)
T ss_pred             ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHh
Confidence            578899999999999999999999999999999999999999999886532211111111   1111   1122444444


Q ss_pred             eeeeee------------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRF------------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~------------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+....                        ......+..+..||+||+||++||+||+.+|+++||||   |++++|+..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDE---P~~~LD~~~  173 (234)
T cd03251          97 AYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDE---ATSALDTES  173 (234)
T ss_pred             hccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---ccccCCHHH
Confidence            332110                        00001123456799999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+++....+ +.+|+++||+.+++.. ||++++|+ .|+.
T Consensus       174 ~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~v~~l~-~G~i  214 (234)
T cd03251         174 ERLVQAALERLMK-NRTTFVIAHRLSTIEN-ADRIVVLE-DGKI  214 (234)
T ss_pred             HHHHHHHHHHhcC-CCEEEEEecCHHHHhh-CCEEEEec-CCeE
Confidence             778888887654 7899999999999976 99999998 6654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.96  E-value=4.9e-31  Score=225.22  Aligned_cols=165  Identities=15%  Similarity=0.224  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc---ccCCCEEEeecCchhhhH--H----HHHHHhhhhhccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS---KSVGAKAVACTQPRRVAA--M----SVAQRVSEEMDCQLG  136 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~---~~~G~~~i~~~~~~~~~~--~----~~~~~~~~~~~~~~~  136 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++   |++|++.++|.+......  .    .+.+........++.
T Consensus        22 il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~  101 (202)
T cd03233          22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVR  101 (202)
T ss_pred             eeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHH
Confidence            5788999999999999999999999999999999998   889999998875432210  0    001111112234555


Q ss_pred             cceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCC-cE-EEE
Q psy2071         137 QEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADL-KL-VIM  213 (302)
Q Consensus       137 ~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~-~~-~ii  213 (302)
                      +++.+.....    .+..+..||+||+||++||+||+.+|+++||||   |++++|+.. ..+.+++.+..+. +. ++|
T Consensus       102 ~~l~~~~~~~----~~~~~~~LS~Ge~qrl~laral~~~p~llllDE---Pt~~LD~~~~~~~~~~l~~~~~~~~~t~ii  174 (202)
T cd03233         102 ETLDFALRCK----GNEFVRGISGGERKRVSIAEALVSRASVLCWDN---STRGLDSSTALEILKCIRTMADVLKTTTFV  174 (202)
T ss_pred             HHHhhhhhhc----cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcC---CCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            6655433221    455678899999999999999999999999999   999999887 7788888765432 44 456


Q ss_pred             EEecCHHHHHhhccCCCeeeecCcC
Q psy2071         214 SATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       214 ~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++|+.+.+.++||++++|+ .|+.
T Consensus       175 ~~~h~~~~~~~~~d~i~~l~-~G~i  198 (202)
T cd03233         175 SLYQASDEIYDLFDKVLVLY-EGRQ  198 (202)
T ss_pred             EEcCCHHHHHHhCCeEEEEE-CCEE
Confidence            66777899999999999998 6653

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.96  E-value=4.2e-31  Score=233.32  Aligned_cols=169  Identities=19%  Similarity=0.247  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC-----chhhhHHH-------HHHHhhhh---
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ-----PRRVAAMS-------VAQRVSEE---  130 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~-----~~~~~~~~-------~~~~~~~~---  130 (302)
                      +.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|..     ........       ....+.+.   
T Consensus        18 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~   97 (253)
T TIGR02323        18 GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRD   97 (253)
T ss_pred             EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCccc
Confidence            4789999999999999999999999999999999999999999998754     21111000       00111111   


Q ss_pred             ---hccccccceeee-------------------e-eecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071         131 ---MDCQLGQEVGYS-------------------I-RFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE  186 (302)
Q Consensus       131 ---~~~~~~~~v~~~-------------------~-~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~  186 (302)
                         ...++.+++.+.                   + .+... ...++.+..||+||+||++||+||+.+|++|||||   
T Consensus        98 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDE---  174 (253)
T TIGR02323        98 GLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDE---  174 (253)
T ss_pred             ccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcC---
Confidence               111222222110                   0 00000 12244667799999999999999999999999999   


Q ss_pred             CCcchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         187 RTLATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       187 p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |++++|+.. ..+.+++.... +.+.++|++||+.+.+..+||++++|+ .|+.
T Consensus       175 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~-~G~i  227 (253)
T TIGR02323       175 PTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQ-QGRV  227 (253)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence            999999887 77888887654 347899999999999999999999998 6654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=5e-31  Score=237.13  Aligned_cols=169  Identities=15%  Similarity=0.117  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh--------hhHHHHHHHhhhh-----hc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR--------VAAMSVAQRVSEE-----MD  132 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~--------~~~~~~~~~~~~~-----~~  132 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+...        ........++.+.     ..
T Consensus        26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~  105 (289)
T PRK13645         26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ  105 (289)
T ss_pred             eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh
Confidence            5788999999999999999999999999999999999999999988754210        0000000011110     11


Q ss_pred             cccccceeeee------------------eecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071         133 CQLGQEVGYSI------------------RFEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD  192 (302)
Q Consensus       133 ~~~~~~v~~~~------------------~~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD  192 (302)
                      .++.+++.+..                  .....  ...++.+..||+||+||++||+||+.+|++|||||   |++++|
T Consensus       106 ~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDE---Pt~~LD  182 (289)
T PRK13645        106 ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDE---PTGGLD  182 (289)
T ss_pred             hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC---CcccCC
Confidence            13333332210                  00011  12245567899999999999999999999999999   999999


Q ss_pred             HHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         193 ILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       193 ~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +.. ..+.+++....+ .+.|||++||+++++.++||++++|+ .|+.
T Consensus       183 ~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~-~G~i  229 (289)
T PRK13645        183 PKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMH-EGKV  229 (289)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence            887 778888776543 47899999999999999999999998 6654

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.7e-30  Score=212.72  Aligned_cols=175  Identities=14%  Similarity=0.153  Sum_probs=135.9

Q ss_pred             cCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhh-------hh
Q psy2071          59 ITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSE-------EM  131 (302)
Q Consensus        59 ~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~-------~~  131 (302)
                      +.+....++++++..|++|.+++++||||+||||||.+++.+++.++|.+.+.|.+........+++.++-       ..
T Consensus         9 K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~   88 (252)
T COG4604           9 KSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINS   88 (252)
T ss_pred             HhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhh
Confidence            34444456889999999999999999999999999999999999999999999988655554444444332       23


Q ss_pred             ccccccceeeeee---e------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071         132 DCQLGQEVGYSIR---F------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA  190 (302)
Q Consensus       132 ~~~~~~~v~~~~~---~------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~  190 (302)
                      ..++.+-|+|.--   -                  +.....++.+..|||||+||..+|..++.+.+.++|||   |.++
T Consensus        89 rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDE---PLNN  165 (252)
T COG4604          89 RLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDE---PLNN  165 (252)
T ss_pred             eeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecC---cccc
Confidence            4466666655420   0                  00112345567799999999999999999999999999   9999


Q ss_pred             hHHHH-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         191 TDILM-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       191 lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +|... ..+.+++++. .+.|+||+++-||++++..|+|.++-|+ .|+
T Consensus       166 LDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK-~G~  213 (252)
T COG4604         166 LDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALK-NGK  213 (252)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeec-CCE
Confidence            99655 4455555543 4669999999999999999999999998 554

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.96  E-value=7.9e-31  Score=233.06  Aligned_cols=170  Identities=14%  Similarity=0.138  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhhh----hhcccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVSE----EMDCQLGQ  137 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~~----~~~~~~~~  137 (302)
                      .+++++++.+.+|++++|+|+||||||||+++|+|+++|++|++.++|.+.........   ..++.+    ....++.+
T Consensus        21 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~  100 (265)
T PRK10253         21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQE  100 (265)
T ss_pred             EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHH
Confidence            46889999999999999999999999999999999999999999998865422111100   111111    11223333


Q ss_pred             ceeeee-e----------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         138 EVGYSI-R----------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       138 ~v~~~~-~----------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      ++.+.. .                      +......++.+..||+||+||++||+|++.+|++|||||   |++++|+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE---Pt~gLD~~  177 (265)
T PRK10253        101 LVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDE---PTTWLDIS  177 (265)
T ss_pred             HHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeC---ccccCCHH
Confidence            332210 0                      000011245567799999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         195 M-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       195 ~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      . ..+.+++....+ .+.|||++||+++++.++||++++|+ .|+.
T Consensus       178 ~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~-~G~i  222 (265)
T PRK10253        178 HQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALR-EGKI  222 (265)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            7 778888876644 47899999999999999999999998 6653

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.96  E-value=3.9e-31  Score=224.05  Aligned_cols=158  Identities=17%  Similarity=0.182  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc--cccCCCEEEeecCchhh---hHHHHHHHhhhhhcccccccee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY--SKSVGAKAVACTQPRRV---AAMSVAQRVSEEMDCQLGQEVG  140 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~--~~~~G~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~  140 (302)
                      +++++++.+++|++++|+|+||||||||+++|+|+.  +|++|++.+++......   ....+.+........++.+++.
T Consensus        22 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~  101 (192)
T cd03232          22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALR  101 (192)
T ss_pred             eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHH
Confidence            468899999999999999999999999999999986  48999999988654210   0000011111111223344433


Q ss_pred             eeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCH
Q psy2071         141 YSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDA  219 (302)
Q Consensus       141 ~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~  219 (302)
                      +...          ...||+||+||+++|+|++.+|++|||||   |++++|+.. ..+.+++....+.+.|++++||+.
T Consensus       102 ~~~~----------~~~LSgGe~qrv~la~al~~~p~vlllDE---P~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~  168 (192)
T cd03232         102 FSAL----------LRGLSVEQRKRLTIGVELAAKPSILFLDE---PTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQP  168 (192)
T ss_pred             HHHH----------HhcCCHHHhHHHHHHHHHhcCCcEEEEeC---CCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCC
Confidence            2110          12899999999999999999999999999   999999887 778888877655588999999999


Q ss_pred             H-HHHhhccCCCeeeec-Cc
Q psy2071         220 G-KFQQYFDNAPLMNVP-GR  237 (302)
Q Consensus       220 ~-~~~~~~d~~~~l~i~-g~  237 (302)
                      + .+..+||++++|+ . |+
T Consensus       169 ~~~~~~~~d~i~~l~-~~g~  187 (192)
T cd03232         169 SASIFEKFDRLLLLK-RGGK  187 (192)
T ss_pred             hHHHHhhCCEEEEEc-CCCe
Confidence            8 5789999999997 4 54

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.96  E-value=2.2e-30  Score=226.53  Aligned_cols=167  Identities=14%  Similarity=0.117  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~v  139 (302)
                      +.+++++.+++|++++|+|+||||||||+++|+|+++|++|++.+.|.+...........   .+.+   .+..++.+++
T Consensus        17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl   96 (237)
T cd03252          17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNI   96 (237)
T ss_pred             ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHh
Confidence            468899999999999999999999999999999999999999999886542211111000   0111   1123444444


Q ss_pred             eeeeeec------------C------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFE------------D------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~------------~------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+.....            .            ....+..+..||+||+||++||+|++.+|++|||||   |++++|+..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE---P~~~LD~~~  173 (237)
T cd03252          97 ALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDE---ATSALDYES  173 (237)
T ss_pred             hccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC---CcccCCHHH
Confidence            3211000            0            000123457899999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+++....+ +.||+++||+++.+. .||++++|+ .|+.
T Consensus       174 ~~~l~~~l~~~~~-~~tiii~sH~~~~~~-~~d~v~~l~-~G~i  214 (237)
T cd03252         174 EHAIMRNMHDICA-GRTVIIIAHRLSTVK-NADRIIVME-KGRI  214 (237)
T ss_pred             HHHHHHHHHHhcC-CCEEEEEeCCHHHHH-hCCEEEEEE-CCEE
Confidence             778888887654 789999999999985 699999998 6664

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.96  E-value=4.6e-30  Score=222.94  Aligned_cols=166  Identities=17%  Similarity=0.205  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhh---hhhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVS---EEMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~v  139 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.............   ++.   ..+..++.+++
T Consensus        29 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl  108 (226)
T cd03248          29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNI  108 (226)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHh
Confidence            588999999999999999999999999999999999999999999886532211000000   000   00111333333


Q ss_pred             eeeee----------------------e--cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIR----------------------F--EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~----------------------~--~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+...                      +  ......+..+..||+||+||++||++|+.+|++|||||   |+.++|+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE---Pt~~LD~~~  185 (226)
T cd03248         109 AYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDE---ATSALDAES  185 (226)
T ss_pred             ccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHH
Confidence            22110                      0  00112244567799999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                       ..+.+++....+ +.|++++||+.+++. .||++++|+ .|+
T Consensus       186 ~~~l~~~l~~~~~-~~tii~~sh~~~~~~-~~d~i~~l~-~g~  225 (226)
T cd03248         186 EQQVQQALYDWPE-RRTVLVIAHRLSTVE-RADQILVLD-GGR  225 (226)
T ss_pred             HHHHHHHHHHHcC-CCEEEEEECCHHHHH-hCCEEEEec-CCc
Confidence             778888887655 589999999999996 599999997 553

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.8e-30  Score=232.74  Aligned_cols=168  Identities=15%  Similarity=0.167  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccC---CCEEEeecCchhhhHHHHH---HHhh-----hhhccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSV---GAKAVACTQPRRVAAMSVA---QRVS-----EEMDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~---G~~~i~~~~~~~~~~~~~~---~~~~-----~~~~~~  134 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|+.   |++.+.|............   ..+.     .....+
T Consensus        22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t  101 (282)
T PRK13640         22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGAT  101 (282)
T ss_pred             ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCC
Confidence            5789999999999999999999999999999999999987   8999988754321111111   1111     122345


Q ss_pred             cccceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         135 LGQEVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       135 ~~~~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+++.+......                   ....++.+..||+||+||++||+||+.+|++|||||   |++++|+..
T Consensus       102 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDE---Pt~gLD~~~  178 (282)
T PRK13640        102 VGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDE---STSMLDPAG  178 (282)
T ss_pred             HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC---CcccCCHHH
Confidence            5666554321110                   011245567799999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+++....+ .|.|||++||+++.+. +||++++|+ .|+.
T Consensus       179 ~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~-~G~i  221 (282)
T PRK13640        179 KEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLD-DGKL  221 (282)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEE-CCEE
Confidence             778888876644 4889999999999985 799999998 6664

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=6.9e-31  Score=231.90  Aligned_cols=169  Identities=17%  Similarity=0.181  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchhh--hH---HHHHHHhhhh---h
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRRV--AA---MSVAQRVSEE---M  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~~--~~---~~~~~~~~~~---~  131 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+..     |++|++.++|.+....  ..   ......+.+.   +
T Consensus        20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~   99 (253)
T PRK14242         20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF   99 (253)
T ss_pred             eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence            35789999999999999999999999999999999864     5789999988653210  00   0000111111   1


Q ss_pred             ccccccceeeeeee-------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         132 DCQLGQEVGYSIRF-------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       132 ~~~~~~~v~~~~~~-------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      ..++.+++.+....                   ...     ...++....||+||+||++||+||+.+|++|||||   |
T Consensus       100 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDE---P  176 (253)
T PRK14242        100 PKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDE---P  176 (253)
T ss_pred             cCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---C
Confidence            12344444321100                   000     01234467799999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++++|+.. ..+.+++....+ +.||+++||+++++.++||++++|+ .|+.
T Consensus       177 t~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v~~l~-~G~i  226 (253)
T PRK14242        177 ASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARVSDVTAFFY-MGKL  226 (253)
T ss_pred             cccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHhCCEEEEEE-CCEE
Confidence            99999887 778888887654 6899999999999999999999998 6653

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.96  E-value=9.9e-31  Score=232.09  Aligned_cols=170  Identities=12%  Similarity=0.123  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccC---CCEEEeecCchhh-----hHH-------HHHHHhhh
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSV---GAKAVACTQPRRV-----AAM-------SVAQRVSE  129 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~---G~~~i~~~~~~~~-----~~~-------~~~~~~~~  129 (302)
                      .+.+++++.|.+|++++|+|+||||||||+++|+|+++|+.   |++.+.|.+....     ...       .+.+....
T Consensus        18 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~   97 (262)
T PRK09984         18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNL   97 (262)
T ss_pred             EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccccc
Confidence            35789999999999999999999999999999999998864   8999988654221     000       01111111


Q ss_pred             hhccccccceeeeee---------------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEc
Q psy2071         130 EMDCQLGQEVGYSIR---------------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLD  182 (302)
Q Consensus       130 ~~~~~~~~~v~~~~~---------------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLD  182 (302)
                      ....++.+++.+...                           +......++.+..||+||+||++||+||+.+|++||||
T Consensus        98 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  177 (262)
T PRK09984         98 VNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILAD  177 (262)
T ss_pred             ccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEec
Confidence            222345555433210                           00000123456679999999999999999999999999


Q ss_pred             CCCCCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         183 EAHERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       183 E~~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |   |++++|+.. ..+.+++....+ .+.|||++|||.+.+..+||++++|+ .|+.
T Consensus       178 E---Pt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~-~g~i  231 (262)
T PRK09984        178 E---PIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALR-QGHV  231 (262)
T ss_pred             C---ccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            9   999999887 778888887653 47899999999999999999999998 6653

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.96  E-value=2.1e-30  Score=227.59  Aligned_cols=153  Identities=15%  Similarity=0.148  Sum_probs=112.4

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceee-----------
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGY-----------  141 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------  141 (302)
                      .|++|++++|+||||||||||+++|+|+++|++|.+.+.+...   +..  .+........++.+++.+           
T Consensus        21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i---~~~--~q~~~~~~~~tv~e~l~~~~~~~~~~~~~   95 (246)
T cd03237          21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV---SYK--PQYIKADYEGTVRDLLSSITKDFYTHPYF   95 (246)
T ss_pred             CcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceE---EEe--cccccCCCCCCHHHHHHHHhhhccccHHH
Confidence            4568999999999999999999999999999999998876421   100  000000011111111110           


Q ss_pred             ---ee-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcC-CCcEEEEEE
Q psy2071         142 ---SI-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRA-DLKLVIMSA  215 (302)
Q Consensus       142 ---~~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~  215 (302)
                         .+ .+......++.+..|||||+||++||+||+.+|+++||||   |++++|+.. ..+.+++.... +.+.+||++
T Consensus        96 ~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDE---Pt~~LD~~~~~~l~~~l~~~~~~~~~tiiiv  172 (246)
T cd03237          96 KTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDE---PSAYLDVEQRLMASKVIRRFAENNEKTAFVV  172 (246)
T ss_pred             HHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence               00 0111112345678899999999999999999999999999   999999887 67777777654 347899999


Q ss_pred             ecCHHHHHhhccCCCeee
Q psy2071         216 TLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       216 thd~~~~~~~~d~~~~l~  233 (302)
                      |||++.+..+||++++|+
T Consensus       173 sHd~~~~~~~~d~i~~l~  190 (246)
T cd03237         173 EHDIIMIDYLADRLIVFE  190 (246)
T ss_pred             eCCHHHHHHhCCEEEEEc
Confidence            999999999999999986

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.96  E-value=2e-30  Score=224.26  Aligned_cols=166  Identities=18%  Similarity=0.238  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhhhh---hccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVSEE---MDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~v  139 (302)
                      +.+++++.|++|++++|+||||||||||+++|+|+.+|+.|++.+.|...........   ..++.+.   +..++.+++
T Consensus        19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l   98 (220)
T cd03245          19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNI   98 (220)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHh
Confidence            5789999999999999999999999999999999999999999998865322111000   0111111   112344443


Q ss_pred             eeeeeec------------CC-CCcc-----------ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFE------------DC-SSPK-----------TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~------------~~-~~~~-----------~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+.....            .. ...+           .....||+||+||++||+|++.+|++|||||   |++++|+..
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDE---Pt~~LD~~~  175 (220)
T cd03245          99 TLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDE---PTSAMDMNS  175 (220)
T ss_pred             hcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeC---ccccCCHHH
Confidence            3211100            00 0001           1235899999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                       ..+.+++....+. .|||++||+.+.+ ++||++++|+ .|+
T Consensus       176 ~~~l~~~l~~~~~~-~tii~~sH~~~~~-~~~d~v~~l~-~g~  215 (220)
T cd03245         176 EERLKERLRQLLGD-KTLIIITHRPSLL-DLVDRIIVMD-SGR  215 (220)
T ss_pred             HHHHHHHHHHhcCC-CEEEEEeCCHHHH-HhCCEEEEEe-CCe
Confidence             7888888876554 7999999999987 7999999998 665

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.96  E-value=3.5e-30  Score=223.24  Aligned_cols=161  Identities=19%  Similarity=0.208  Sum_probs=118.8

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh----hhHHHHHHHhhhhhccccccceeeee-----
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR----VAAMSVAQRVSEEMDCQLGQEVGYSI-----  143 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~-----  143 (302)
                      .|++|++++|+|+||||||||+++|+|+++|++|++.++|.+...    ++.......+...+..++.+++.+..     
T Consensus         2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~   81 (223)
T TIGR03771         2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG   81 (223)
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccc
Confidence            578999999999999999999999999999999999999875421    11111111110011123333322110     


Q ss_pred             -----------------e-ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHH
Q psy2071         144 -----------------R-FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQ  204 (302)
Q Consensus       144 -----------------~-~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~  204 (302)
                                       . +......++.+..||+||+||++||++|+.+|++|||||   |++++|+.. ..+.+++.+
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDE---P~~~LD~~~~~~l~~~l~~  158 (223)
T TIGR03771        82 WLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDE---PFTGLDMPTQELLTELFIE  158 (223)
T ss_pred             cccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHHHHHHH
Confidence                             0 000011244567799999999999999999999999999   999999887 778888887


Q ss_pred             cCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         205 RADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       205 ~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ..+.+.|++++||+++++..+||+++++  .|+.
T Consensus       159 ~~~~~~tvii~sH~~~~~~~~~d~i~~l--~G~i  190 (223)
T TIGR03771       159 LAGAGTAILMTTHDLAQAMATCDRVVLL--NGRV  190 (223)
T ss_pred             HHHcCCEEEEEeCCHHHHHHhCCEEEEE--CCEE
Confidence            6556889999999999999999999877  4653

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=7.3e-31  Score=231.77  Aligned_cols=169  Identities=15%  Similarity=0.150  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCch--hhhHHHHH---HHhhh----h
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPR--RVAAMSVA---QRVSE----E  130 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~--~~~~~~~~---~~~~~----~  130 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|     ++|++.++|.+..  ........   ..+.+    .
T Consensus        18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~   97 (253)
T PRK14267         18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF   97 (253)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence            357899999999999999999999999999999999987     4899999886432  11000000   11111    1


Q ss_pred             hccccccceeeeee--------------------ecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCC
Q psy2071         131 MDCQLGQEVGYSIR--------------------FEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH  185 (302)
Q Consensus       131 ~~~~~~~~v~~~~~--------------------~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~  185 (302)
                      ...++.+++.+...                    ....     ...++....||+||+||++||+||+.+|++|||||  
T Consensus        98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE--  175 (253)
T PRK14267         98 PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE--  175 (253)
T ss_pred             CCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcC--
Confidence            12233443332110                    0000     01234567799999999999999999999999999  


Q ss_pred             CCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         186 ERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       186 ~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       |++++|+.. ..+.+++....+ +.|+|++||+++.+..+||++++|+ .|+.
T Consensus       176 -P~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i  226 (253)
T PRK14267        176 -PTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLY-LGKL  226 (253)
T ss_pred             -CCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEE-CCEE
Confidence             999999877 778888877654 5899999999999999999999998 6664

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.96  E-value=1.3e-30  Score=226.04  Aligned_cols=165  Identities=16%  Similarity=0.160  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeec----CchhhhH-----------HHHHHHhhhh
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT----QPRRVAA-----------MSVAQRVSEE  130 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~----~~~~~~~-----------~~~~~~~~~~  130 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|.+.+.+.    +......           ..+.+.....
T Consensus        23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~  102 (224)
T TIGR02324        23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVI  102 (224)
T ss_pred             EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccC
Confidence            578899999999999999999999999999999999999999999732    2211100           0001111111


Q ss_pred             hccccccceeeee------------------eecCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071         131 MDCQLGQEVGYSI------------------RFEDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA  190 (302)
Q Consensus       131 ~~~~~~~~v~~~~------------------~~~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~  190 (302)
                      ...++.+++.+..                  ......  ..+..+..||+||+||++||+||+.+|++|||||   |+++
T Consensus       103 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE---Pt~~  179 (224)
T TIGR02324       103 PRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDE---PTAS  179 (224)
T ss_pred             CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---Cccc
Confidence            1122222222110                  000111  1234567899999999999999999999999999   9999


Q ss_pred             hHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         191 TDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       191 lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      +|+.. ..+.++++...+.+.|++++||+.+.+..+||+++.+.
T Consensus       180 LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~  223 (224)
T TIGR02324       180 LDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT  223 (224)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence            99887 77888888766568899999999999999999987764

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1e-30  Score=251.46  Aligned_cols=169  Identities=14%  Similarity=0.128  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH--------HHHHHhhhhhccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM--------SVAQRVSEEMDCQLG  136 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~  136 (302)
                      .+++++++.+++|++++|+|+||||||||+++|+|+++|++|++.+.|.........        .+.+........++.
T Consensus        12 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   91 (491)
T PRK10982         12 KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVM   91 (491)
T ss_pred             EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHH
Confidence            357899999999999999999999999999999999999999999988653211100        011111111234555


Q ss_pred             cceeeeee-e---------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         137 QEVGYSIR-F---------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       137 ~~v~~~~~-~---------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      +++.+... .                     ......++.+..|||||+||++||+||+.+|++|||||   ||+++|+.
T Consensus        92 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDE---Pt~~LD~~  168 (491)
T PRK10982         92 DNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDE---PTSSLTEK  168 (491)
T ss_pred             HHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeC---CCCCCCHH
Confidence            55543210 0                     00012245567799999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      . ..+.+++....+.+.|+|++|||++++..+||++++|+ .|+
T Consensus       169 ~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~-~G~  211 (491)
T PRK10982        169 EVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILR-DGQ  211 (491)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE-CCE
Confidence            7 77888887766668899999999999999999999998 554

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.9e-30  Score=250.79  Aligned_cols=168  Identities=11%  Similarity=0.066  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH----HHHhhh----hhcccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV----AQRVSE----EMDCQLGQ  137 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~----~~~~~~----~~~~~~~~  137 (302)
                      +.+++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|...........    ..++.+    ....++.+
T Consensus        20 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e   99 (510)
T PRK09700         20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLE   99 (510)
T ss_pred             EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHH
Confidence            5789999999999999999999999999999999999999999998865422110000    011111    12234444


Q ss_pred             ceeeeee--------------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071         138 EVGYSIR--------------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT  191 (302)
Q Consensus       138 ~v~~~~~--------------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l  191 (302)
                      ++.+...                          +......++.+..|||||+||++||+||+.+|++|||||   ||+++
T Consensus       100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDE---Pt~~L  176 (510)
T PRK09700        100 NLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDE---PTSSL  176 (510)
T ss_pred             HhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCCC
Confidence            4433210                          000012245567799999999999999999999999999   99999


Q ss_pred             HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         192 DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       192 D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      |+.. ..+.+++.+..+.+.|||++|||++.+..+||++++|+ .|+
T Consensus       177 D~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~-~G~  222 (510)
T PRK09700        177 TNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMK-DGS  222 (510)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence            9887 77888888766568899999999999999999999998 554

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.96  E-value=1.6e-29  Score=202.63  Aligned_cols=170  Identities=15%  Similarity=0.134  Sum_probs=129.8

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH-----------HHHhhhhhc
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV-----------AQRVSEEMD  132 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~-----------~~~~~~~~~  132 (302)
                      ..+++++++.|++||.++|+||+|||||||+-.++|+..|++|++.+.|++......-..           +|.+...++
T Consensus        23 l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~  102 (228)
T COG4181          23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPN  102 (228)
T ss_pred             eeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecccc
Confidence            345789999999999999999999999999999999999999999999987544322111           111122334


Q ss_pred             cccccceeeeeeecCCCCc-------------------cccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         133 CQLGQEVGYSIRFEDCSSP-------------------KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       133 ~~~~~~v~~~~~~~~~~~~-------------------~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      ++..+||..+..+......                   .-....||||++|||+||||++..|++||.||   ||-++|.
T Consensus       103 ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADE---PTGNLD~  179 (228)
T COG4181         103 LTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADE---PTGNLDR  179 (228)
T ss_pred             chhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccC---CCCCcch
Confidence            5666677666544332111                   11245599999999999999999999999999   9999997


Q ss_pred             HH-HHHHHHHH-HcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         194 LM-GVLKEVIK-QRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       194 ~~-~~l~~ll~-~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .. ..+.+++- ...+.|.|++++|||...+. -|+|++-|. .|+.
T Consensus       180 ~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~-Rc~R~~r~~-~G~l  224 (228)
T COG4181         180 ATGDKIADLLFALNRERGTTLVLVTHDPQLAA-RCDRQLRLR-SGRL  224 (228)
T ss_pred             hHHHHHHHHHHHHhhhcCceEEEEeCCHHHHH-hhhheeeee-ccee
Confidence            77 66666654 44577999999999988765 589998887 6653

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=7.6e-31  Score=224.39  Aligned_cols=164  Identities=13%  Similarity=0.094  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--HH----HHHHhhhhhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--MS----VAQRVSEEMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~v  139 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|........  ..    +.+........++.+++
T Consensus        16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l   95 (204)
T PRK13538         16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENL   95 (204)
T ss_pred             EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHH
Confidence            5789999999999999999999999999999999999999999998865422110  00    00110111122344443


Q ss_pred             eeeeee----------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHH
Q psy2071         140 GYSIRF----------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVI  202 (302)
Q Consensus       140 ~~~~~~----------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll  202 (302)
                      .+....                ......++.+..||+||+||++||+|++.+|+++||||   |+.++|+.. ..+.+++
T Consensus        96 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE---Pt~~LD~~~~~~l~~~l  172 (204)
T PRK13538         96 RFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDE---PFTAIDKQGVARLEALL  172 (204)
T ss_pred             HHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC---CCccCCHHHHHHHHHHH
Confidence            322111                00012245667899999999999999999999999999   999999887 7788888


Q ss_pred             HHcCCCcEEEEEEecCHHHHHhhccCCCee
Q psy2071         203 KQRADLKLVIMSATLDAGKFQQYFDNAPLM  232 (302)
Q Consensus       203 ~~~~~~~~~ii~~thd~~~~~~~~d~~~~l  232 (302)
                      ....+.+.|++++||+.+++..+.++++++
T Consensus       173 ~~~~~~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        173 AQHAEQGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             HHHHHCCCEEEEEecChhhhccCCceEEec
Confidence            876555789999999999998866665443

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3e-30  Score=249.33  Aligned_cols=169  Identities=17%  Similarity=0.138  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-HHH---HHHhhh-------hhccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-MSV---AQRVSE-------EMDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-~~~---~~~~~~-------~~~~~  134 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|........ ...   ..++.+       ....+
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t  357 (510)
T PRK09700        278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFS  357 (510)
T ss_pred             cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCc
Confidence            5899999999999999999999999999999999999999999998864321100 000   011111       11234


Q ss_pred             cccceeeeee----------------------------ecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCC
Q psy2071         135 LGQEVGYSIR----------------------------FEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH  185 (302)
Q Consensus       135 ~~~~v~~~~~----------------------------~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~  185 (302)
                      +.+++.+...                            +... ...++.+..|||||+||++||++|+.+|++|||||  
T Consensus       358 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE--  435 (510)
T PRK09700        358 IAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE--  435 (510)
T ss_pred             HHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC--
Confidence            4444332110                            0010 12355677899999999999999999999999999  


Q ss_pred             CCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         186 ERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       186 ~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ||+++|+.. ..+.++++...+.|.|||++|||++++..+||++++|+ .|+.
T Consensus       436 -Pt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~-~G~i  487 (510)
T PRK09700        436 -PTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFC-EGRL  487 (510)
T ss_pred             -CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEE-CCEE
Confidence             999999887 78888888765568899999999999999999999998 6653

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=8.7e-31  Score=231.42  Aligned_cols=169  Identities=17%  Similarity=0.150  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhh-----hHHHHHHHhhh---hh
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRV-----AAMSVAQRVSE---EM  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~-----~~~~~~~~~~~---~~  131 (302)
                      .+.+++++.|++|++++|+|+||||||||+++|+|+++|     ++|++.+.|......     ........+.+   .+
T Consensus        21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~  100 (254)
T PRK14273         21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF  100 (254)
T ss_pred             eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence            357899999999999999999999999999999999987     489999988643210     00000011111   11


Q ss_pred             ccccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         132 DCQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       132 ~~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      ..++.+++.+.....                   ..     ...++....||+||+||++||++|+.+|++|||||   |
T Consensus       101 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE---P  177 (254)
T PRK14273        101 LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDE---P  177 (254)
T ss_pred             cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---C
Confidence            234444443221100                   00     01244567799999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++++|+.. ..+.+++....+ +.|++++||+++++..+||++++|+ .|+.
T Consensus       178 t~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~-~G~i  227 (254)
T PRK14273        178 TSALDPISTGKIEELIINLKE-SYTIIIVTHNMQQAGRISDRTAFFL-NGCI  227 (254)
T ss_pred             CcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            99999887 778888887654 6899999999999999999999998 6653

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.96  E-value=5.7e-30  Score=222.75  Aligned_cols=167  Identities=15%  Similarity=0.172  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~v  139 (302)
                      +.+++++.+++|++++|+||||||||||+++|+|+++|++|++.+.|.............   ++.+   .+..++.+++
T Consensus        18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~   97 (229)
T cd03254          18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENI   97 (229)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHH
Confidence            578999999999999999999999999999999999999999999886543211111011   1111   1112333333


Q ss_pred             eeeeeecC------------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFED------------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~~------------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+......                        .......+..||+||+||++||++|+.+|++|||||   |++++|+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDE---P~~~LD~~~  174 (229)
T cd03254          98 RLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDE---ATSNIDTET  174 (229)
T ss_pred             hccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---ccccCCHHH
Confidence            32210000                        000122357899999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+++....+ +.|||++||+.+.+. .||++++|+ .|+.
T Consensus       175 ~~~l~~~l~~~~~-~~tii~~sh~~~~~~-~~d~i~~l~-~g~~  215 (229)
T cd03254         175 EKLIQEALEKLMK-GRTSIIIAHRLSTIK-NADKILVLD-DGKI  215 (229)
T ss_pred             HHHHHHHHHHhcC-CCEEEEEecCHHHHh-hCCEEEEEe-CCeE
Confidence             778888887654 789999999999986 599999998 6653

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.7e-30  Score=231.58  Aligned_cols=168  Identities=13%  Similarity=0.150  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHH---HHhh-----hhhcccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA---QRVS-----EEMDCQLGQ  137 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~  137 (302)
                      +.+++++.|++|++++|+||||||||||+++|+|+++|++|++.++|............   ..+.     .....++.+
T Consensus        24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e  103 (271)
T PRK13632         24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVED  103 (271)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHH
Confidence            57889999999999999999999999999999999999999999988654221110000   1111     122345555


Q ss_pred             ceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071         138 EVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV  197 (302)
Q Consensus       138 ~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~  197 (302)
                      ++.+....                   ......++.+..||+||+||++||+||+.+|++|||||   |++++|+.. ..
T Consensus       104 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE---P~~gLD~~~~~~  180 (271)
T PRK13632        104 DIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE---STSMLDPKGKRE  180 (271)
T ss_pred             HHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHH
Confidence            55432110                   00011245567799999999999999999999999999   999999887 77


Q ss_pred             HHHHHHHcCCC-cEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         198 LKEVIKQRADL-KLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       198 l~~ll~~~~~~-~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +.+++.+..+. +.|+|++||+.+.+. +||++++|+ .|+.
T Consensus       181 l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~-~G~i  220 (271)
T PRK13632        181 IKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFS-EGKL  220 (271)
T ss_pred             HHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEE-CCEE
Confidence            88888776544 489999999999985 799999998 6653

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=6.9e-31  Score=232.57  Aligned_cols=168  Identities=17%  Similarity=0.154  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhh-----hHHHHHHHhhhh---hc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRV-----AAMSVAQRVSEE---MD  132 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~-----~~~~~~~~~~~~---~~  132 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|     ++|++.+.|......     .......++.+.   +.
T Consensus        27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  106 (258)
T PRK14268         27 ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP  106 (258)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc
Confidence            57899999999999999999999999999999999875     799999987643210     000001111111   11


Q ss_pred             cccccceeeeee------------------ecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071         133 CQLGQEVGYSIR------------------FEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL  189 (302)
Q Consensus       133 ~~~~~~v~~~~~------------------~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~  189 (302)
                      .++.+++.+...                  ....     ...++.+..||+||+||++||+||+.+|++|||||   |++
T Consensus       107 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE---Pt~  183 (258)
T PRK14268        107 MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE---PTS  183 (258)
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CCc
Confidence            233333322110                  0000     11245567899999999999999999999999999   999


Q ss_pred             chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++|+.. ..+.+++++..+ +.|||++|||.+++.++||++++|+ .|+.
T Consensus       184 ~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~-~G~i  231 (258)
T PRK14268        184 ALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFFL-MGEL  231 (258)
T ss_pred             ccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence            999887 778888887654 6899999999999999999999998 6653

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.96  E-value=5.2e-31  Score=232.20  Aligned_cols=163  Identities=16%  Similarity=0.166  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccce------
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEV------  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v------  139 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.+..  .++...........+..++.+++      
T Consensus        19 vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~--~i~~v~q~~~~~~~l~~~~~~~~~~~~~~   96 (251)
T PRK09544         19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL--RIGYVPQKLYLDTTLPLTVNRFLRLRPGT   96 (251)
T ss_pred             EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCcc--CEEEeccccccccccChhHHHHHhccccc
Confidence            5788999999999999999999999999999999999999998876521  11111110000000000111111      


Q ss_pred             -----eeee-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCC-CcEE
Q psy2071         140 -----GYSI-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRAD-LKLV  211 (302)
Q Consensus       140 -----~~~~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~-~~~~  211 (302)
                           ...+ .+......++.+..||+||+||++||+||+.+|++|||||   |++++|+.. ..+.+++....+ .+.|
T Consensus        97 ~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE---Pt~~LD~~~~~~l~~~L~~~~~~~g~t  173 (251)
T PRK09544         97 KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE---PTQGVDVNGQVALYDLIDQLRRELDCA  173 (251)
T ss_pred             cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCcCCCHHHHHHHHHHHHHHHHhcCCE
Confidence                 0001 0111112345678899999999999999999999999999   999999887 777788776544 3789


Q ss_pred             EEEEecCHHHHHhhccCCCeee
Q psy2071         212 IMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       212 ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      ||++||+.+++..+||++++|+
T Consensus       174 iiivsH~~~~i~~~~d~i~~l~  195 (251)
T PRK09544        174 VLMVSHDLHLVMAKTDEVLCLN  195 (251)
T ss_pred             EEEEecCHHHHHHhCCEEEEEC
Confidence            9999999999999999999986

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.96  E-value=1.8e-30  Score=225.38  Aligned_cols=165  Identities=15%  Similarity=0.112  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh---hhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~  138 (302)
                      .+.+++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+...........   .+.+   .+..++.++
T Consensus        21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~en  100 (225)
T PRK10247         21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDN  100 (225)
T ss_pred             eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHH
Confidence            3578999999999999999999999999999999999999999999886532211100000   1111   111233344


Q ss_pred             eeeeee----------------ecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         139 VGYSIR----------------FEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       139 v~~~~~----------------~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                      +.+...                ....  ...++.+..||+||+||++||++|+.+|+++||||   |+.++|+.. ..+.
T Consensus       101 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~~LD~~~~~~l~  177 (225)
T PRK10247        101 LIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE---ITSALDESNKHNVN  177 (225)
T ss_pred             HHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHH
Confidence            332110                0011  01245667799999999999999999999999999   999999887 7788


Q ss_pred             HHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         200 EVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       200 ~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      +++.... +.+.+|+++||+.+++. +||++++|+
T Consensus       178 ~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~  211 (225)
T PRK10247        178 EIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQ  211 (225)
T ss_pred             HHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEe
Confidence            8887654 34789999999999985 699999996

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.7e-30  Score=232.71  Aligned_cols=168  Identities=16%  Similarity=0.142  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh----HHHHHHHhhh-----hhccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA----AMSVAQRVSE-----EMDCQLG  136 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~----~~~~~~~~~~-----~~~~~~~  136 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|.+.+.|.......    .......+.+     ....++.
T Consensus        25 vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~  104 (280)
T PRK13633         25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVE  104 (280)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHH
Confidence            688999999999999999999999999999999999999999999886543211    0000111111     1122344


Q ss_pred             cceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H
Q psy2071         137 QEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G  196 (302)
Q Consensus       137 ~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~  196 (302)
                      +++.+....                   ......++.+..||+||+||++||++|+.+|++|||||   |++++|+.. .
T Consensus       105 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~gLD~~~~~  181 (280)
T PRK13633        105 EDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDE---PTAMLDPSGRR  181 (280)
T ss_pred             HHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHH
Confidence            444332110                   00012245667799999999999999999999999999   999999888 7


Q ss_pred             HHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         197 VLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       197 ~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .+.+++....+ .+.||+++||+++.+.. ||++++|+ .|+.
T Consensus       182 ~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~-~G~i  222 (280)
T PRK13633        182 EVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMD-SGKV  222 (280)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEE-CCEE
Confidence            78888887643 48999999999999976 99999998 6653

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.5e-30  Score=251.18  Aligned_cols=169  Identities=14%  Similarity=0.144  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc--cCCCEEEeecCchhhhHH--------HHHHHhhhhhccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK--SVGAKAVACTQPRRVAAM--------SVAQRVSEEMDCQ  134 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~--~~G~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~  134 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|  ++|.+.+.|.........        .+.+........+
T Consensus        19 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   98 (506)
T PRK13549         19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELS   98 (506)
T ss_pred             EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCc
Confidence            368999999999999999999999999999999999986  799999988654221100        1111111112345


Q ss_pred             cccceeeeeee----------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071         135 LGQEVGYSIRF----------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD  192 (302)
Q Consensus       135 ~~~~v~~~~~~----------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD  192 (302)
                      +.+++.+....                      ......++.+..|||||+||++||+||+.+|++|||||   ||+++|
T Consensus        99 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE---Pt~~LD  175 (506)
T PRK13549         99 VLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDE---PTASLT  175 (506)
T ss_pred             HHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCCCC
Confidence            55555433211                      00012245667899999999999999999999999999   999999


Q ss_pred             HHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         193 ILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       193 ~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +.. ..+.+++....+.+.+||++|||++.+..+||++++|+ .|+
T Consensus       176 ~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~-~G~  220 (506)
T PRK13549        176 ESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIR-DGR  220 (506)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEE-CCE
Confidence            887 77888887765568899999999999999999999998 554

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.96  E-value=9.9e-31  Score=257.67  Aligned_cols=170  Identities=16%  Similarity=0.136  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------HHHHHHhhh------hhc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------MSVAQRVSE------EMD  132 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~~~~~~~~~------~~~  132 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|++|.+.+.|........      .....++.+      ...
T Consensus       338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~  417 (623)
T PRK10261        338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR  417 (623)
T ss_pred             EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence            36789999999999999999999999999999999999999999998864321110      000111111      112


Q ss_pred             cccccceeeeee-------------------ecCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071         133 CQLGQEVGYSIR-------------------FEDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT  191 (302)
Q Consensus       133 ~~~~~~v~~~~~-------------------~~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l  191 (302)
                      .++.+++.+...                   .....  ..++.+..|||||+||++||+||+.+|++|||||   ||+++
T Consensus       418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDE---Pts~L  494 (623)
T PRK10261        418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADE---AVSAL  494 (623)
T ss_pred             CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccC
Confidence            234443322110                   00111  1345667899999999999999999999999999   99999


Q ss_pred             HHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         192 DILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       192 D~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |+.. ..+.+++....+ .+.|||++|||++.+..+||++++|+ .|+.
T Consensus       495 D~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~-~G~i  542 (623)
T PRK10261        495 DVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMY-LGQI  542 (623)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            9887 778888876644 48999999999999999999999998 5653

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.96  E-value=1.5e-30  Score=244.78  Aligned_cols=182  Identities=17%  Similarity=0.212  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc----CCCEEEeecCchhhhHH-------------HHHHHh
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS----VGAKAVACTQPRRVAAM-------------SVAQRV  127 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~----~G~~~i~~~~~~~~~~~-------------~~~~~~  127 (302)
                      .+++++++.|++||++||+|+|||||||+...+.|++++.    +|++.+.|.+.......             .+...-
T Consensus        23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~  102 (539)
T COG1123          23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT  102 (539)
T ss_pred             eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence            4689999999999999999999999999999999999877    69999998753222111             111111


Q ss_pred             hhhhccccccceeeeeeecC-------------------CCCc---cccccccCHHHHHHHhccccCCCCCcEEEEcCCC
Q psy2071         128 SEEMDCQLGQEVGYSIRFED-------------------CSSP---KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH  185 (302)
Q Consensus       128 ~~~~~~~~~~~v~~~~~~~~-------------------~~~~---~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~  185 (302)
                      +..+..+++..+...++.+.                   ....   +.....|||||+||++||+||+.+|++||+||  
T Consensus       103 slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDE--  180 (539)
T COG1123         103 SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADE--  180 (539)
T ss_pred             hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECC--
Confidence            11111223322222111111                   0111   23567799999999999999999999999999  


Q ss_pred             CCCcchHHHH-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeee---ecCcCCccceeecCCC
Q psy2071         186 ERTLATDILM-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMN---VPGRTHPVEIFYTPEP  249 (302)
Q Consensus       186 ~p~~~lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~---i~g~~~~~~~~~~~~~  249 (302)
                       ||.+||+.. ..+.++++.. .+.|++++++|||++.++++||++.||+   +...+.+.+++..|.+
T Consensus       181 -PTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~h  248 (539)
T COG1123         181 -PTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQH  248 (539)
T ss_pred             -CccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCC
Confidence             999999887 6777777754 4679999999999999999999999999   3334466666665543

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.96  E-value=1.5e-30  Score=226.87  Aligned_cols=170  Identities=16%  Similarity=0.177  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-----HHHHHHhhhhhccccccce
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-----MSVAQRVSEEMDCQLGQEV  139 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v  139 (302)
                      .+.+++++.|++|++++|+|+||||||||+++|+|+++|+.|.+.+.|.+......     ..+.+........++.+++
T Consensus        14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl   93 (232)
T cd03300          14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENI   93 (232)
T ss_pred             eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHH
Confidence            35789999999999999999999999999999999999999999998764321110     0001111111122333333


Q ss_pred             eeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         140 GYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       140 ~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                      .+...                   +......++.+..||+||+||++||+|++.+|+++||||   |+.++|+.. ..+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE---P~~gLD~~~~~~l~  170 (232)
T cd03300          94 AFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE---PLGALDLKLRKDMQ  170 (232)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHHHHH
Confidence            22110                   011112345567899999999999999999999999999   999999887 7888


Q ss_pred             HHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         200 EVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       200 ~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++....+ .+.||+++||+.+++.++||++++|+ .|+.
T Consensus       171 ~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~-~G~~  209 (232)
T cd03300         171 LELKRLQKELGITFVFVTHDQEEALTMSDRIAVMN-KGKI  209 (232)
T ss_pred             HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence            88876654 37899999999999999999999998 6654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.5e-30  Score=230.39  Aligned_cols=168  Identities=18%  Similarity=0.153  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh-----hhcccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE-----EMDCQLGQ  137 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~  137 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.............   .+.+     ....++.+
T Consensus        24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~  103 (269)
T PRK13648         24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKY  103 (269)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHH
Confidence            578999999999999999999999999999999999999999999986542211111111   1111     11112222


Q ss_pred             ceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071         138 EVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV  197 (302)
Q Consensus       138 ~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~  197 (302)
                      ++.+...                   +......+..+..||+||+||++||+|++.+|++|||||   |++++|+.. ..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE---Pt~~LD~~~~~~  180 (269)
T PRK13648        104 DVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDE---ATSMLDPDARQN  180 (269)
T ss_pred             HHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHH
Confidence            2222110                   000112345567899999999999999999999999999   999999887 77


Q ss_pred             HHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         198 LKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       198 l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +.+++.+..+ .+.|+|++||+.+++.. ||++++|+ .|+.
T Consensus       181 l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~-~G~i  220 (269)
T PRK13648        181 LLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMN-KGTV  220 (269)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEE-CCEE
Confidence            8888876644 47899999999999975 99999998 6664

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.96  E-value=7.9e-30  Score=222.85  Aligned_cols=167  Identities=18%  Similarity=0.213  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhh---hhhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVS---EEMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~v  139 (302)
                      ..+++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+...........   ++.   ..+..++.+++
T Consensus        16 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl   95 (236)
T cd03253          16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNI   95 (236)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHH
Confidence            578899999999999999999999999999999999999999999886543211110000   000   11123444444


Q ss_pred             eeeeeec------------C-------C-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFE------------D-------C-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~------------~-------~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+.....            .       .     ...+.....||+||+||++||+||+.+|++|||||   |++++|+..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDE---P~~~LD~~~  172 (236)
T cd03253          96 RYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDE---ATSALDTHT  172 (236)
T ss_pred             hhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHH
Confidence            3321000            0       0     00122356799999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+++....+ +.++|++||+.+.+.. ||++++|+ .|+.
T Consensus       173 ~~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~~~~l~-~g~i  213 (236)
T cd03253         173 EREIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKIIVLK-DGRI  213 (236)
T ss_pred             HHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEEEEEE-CCEE
Confidence             778888887766 8899999999999965 99999998 6654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.96  E-value=4.7e-30  Score=219.95  Aligned_cols=166  Identities=14%  Similarity=0.176  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v  139 (302)
                      +.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|..............+   .+   .+..++.+++
T Consensus        23 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l  102 (207)
T cd03369          23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL  102 (207)
T ss_pred             cccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHh
Confidence            57899999999999999999999999999999999999999999988654221111111111   11   1122444444


Q ss_pred             eeeeeec-----CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEE
Q psy2071         140 GYSIRFE-----DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIM  213 (302)
Q Consensus       140 ~~~~~~~-----~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii  213 (302)
                      .+.....     .....+.....||+||+||+++||+++.+|+++||||   |++++|+.. ..+.+++....+ +.|++
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---P~~~LD~~~~~~l~~~l~~~~~-~~tii  178 (207)
T cd03369         103 DPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDE---ATASIDYATDALIQKTIREEFT-NSTIL  178 (207)
T ss_pred             cccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC---CcccCCHHHHHHHHHHHHHhcC-CCEEE
Confidence            3211000     0001234567899999999999999999999999999   999999887 778888887654 78999


Q ss_pred             EEecCHHHHHhhccCCCeeeecCc
Q psy2071         214 SATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       214 ~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ++||+.+.+.. ||++++|+ .|+
T Consensus       179 i~th~~~~~~~-~d~v~~l~-~g~  200 (207)
T cd03369         179 TIAHRLRTIID-YDKILVMD-AGE  200 (207)
T ss_pred             EEeCCHHHHhh-CCEEEEEE-CCE
Confidence            99999999876 99999998 665

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.9e-30  Score=228.24  Aligned_cols=169  Identities=18%  Similarity=0.239  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc---ccCCCEEEeecCchhhhHHHHHH---Hhhh---hhcccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS---KSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQL  135 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~---~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~  135 (302)
                      .+++++++.+++|++++|+|+||||||||+++|+|++.   |++|++.++|.+...........   .+.+   .+..++
T Consensus        16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv   95 (246)
T PRK14269         16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSI   95 (246)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccH
Confidence            35789999999999999999999999999999999974   68999999886543211101011   1111   112244


Q ss_pred             ccceeeeeee--------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071         136 GQEVGYSIRF--------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA  190 (302)
Q Consensus       136 ~~~v~~~~~~--------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~  190 (302)
                      .+++.+....                    ...     ...+.....||+||+||+++|+||+.+|++|||||   |+++
T Consensus        96 ~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---P~~~  172 (246)
T PRK14269         96 YENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDE---PTSA  172 (246)
T ss_pred             HHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---Cccc
Confidence            4444332100                    000     01233456799999999999999999999999999   9999


Q ss_pred             hHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         191 TDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       191 lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +|+.. ..+.+++..... +.|++++||+.+++..+||++++|+ .|+.
T Consensus       173 LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~-~G~i  219 (246)
T PRK14269        173 LDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADYTAFFH-LGEL  219 (246)
T ss_pred             CCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEEE-CCEE
Confidence            99877 778888876654 7899999999999999999999998 6664

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.96  E-value=2.4e-30  Score=227.73  Aligned_cols=168  Identities=15%  Similarity=0.166  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhhh----hhccccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVSE----EMDCQLGQE  138 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~  138 (302)
                      .++++++.|++|++++|+|+||||||||+++|+|+++ .+|++.++|.+.........   ..++.+    ....++.++
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n   89 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY   89 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence            4788999999999999999999999999999999985 58999998875432111110   111111    122344444


Q ss_pred             eeeeeeec------------------CCCCccccccccCHHHHHHHhccccCCC-------CCcEEEEcCCCCCCcchHH
Q psy2071         139 VGYSIRFE------------------DCSSPKTVLKYMTDGMLLREGMSDPMLE-------NYQVILLDEAHERTLATDI  193 (302)
Q Consensus       139 v~~~~~~~------------------~~~~~~~~~~~lS~G~~qr~~la~al~~-------~p~lliLDE~~~p~~~lD~  193 (302)
                      +.+.....                  .....++.+..||+||+||++||+||+.       +|++|||||   |++++|+
T Consensus        90 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDE---Pt~~LD~  166 (248)
T PRK03695         90 LTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDE---PMNSLDV  166 (248)
T ss_pred             HHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcC---CcccCCH
Confidence            43321100                  0011234567799999999999999997       679999999   9999998


Q ss_pred             HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .. ..+.+++....+.+.|+|++||+++++..+||++++|+ .|+.
T Consensus       167 ~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~-~G~i  211 (248)
T PRK03695        167 AQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLK-QGKL  211 (248)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence            87 77888888766568899999999999999999999998 6764

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.96  E-value=3.2e-30  Score=236.87  Aligned_cols=178  Identities=16%  Similarity=0.162  Sum_probs=146.4

Q ss_pred             HhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch--------hhhHHHHHHHh
Q psy2071          56 RKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR--------RVAAMSVAQRV  127 (302)
Q Consensus        56 ~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~--------~~~~~~~~~~~  127 (302)
                      +..+.+|.+.+.+++++.|.+|||.+|+|+||+|||||+++|.|+++|++|++.++|...+        +.+...+.|.+
T Consensus         9 ~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF   88 (501)
T COG3845           9 GITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHF   88 (501)
T ss_pred             ccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeecc
Confidence            3445688888899999999999999999999999999999999999999999999997632        11222333444


Q ss_pred             hhhhccccccceeeeeee----------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCC
Q psy2071         128 SEEMDCQLGQEVGYSIRF----------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH  185 (302)
Q Consensus       128 ~~~~~~~~~~~v~~~~~~----------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~  185 (302)
                      ......|+.+|+.....-                      ......+..+..||-|++||+.|.++|..++++|||||  
T Consensus        89 ~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDE--  166 (501)
T COG3845          89 MLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDE--  166 (501)
T ss_pred             ccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcC--
Confidence            445567777776554421                      11123456778899999999999999999999999999  


Q ss_pred             CCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         186 ERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       186 ~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                       ||+-|-|.. +.+.++++.+++.|.+||++||-++++.++||++.||+ .|+
T Consensus       167 -PTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR-~Gk  217 (501)
T COG3845         167 -PTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLR-RGK  217 (501)
T ss_pred             -CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEe-CCe
Confidence             999999877 78888888888899999999999999999999999999 554

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3.7e-30  Score=230.13  Aligned_cols=168  Identities=15%  Similarity=0.175  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH-------HHHh-hhhhcccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV-------AQRV-SEEMDCQLGQ  137 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~  137 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|...........       .+.. ......++.+
T Consensus        22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e  101 (277)
T PRK13642         22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVED  101 (277)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHH
Confidence            5789999999999999999999999999999999999999999998865422111000       1111 0122334555


Q ss_pred             ceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071         138 EVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV  197 (302)
Q Consensus       138 ~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~  197 (302)
                      ++.+......                   ....++.+..||+||+||++||+||+.+|++|||||   |++++|+.. ..
T Consensus       102 ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDE---Pt~~LD~~~~~~  178 (277)
T PRK13642        102 DVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDE---STSMLDPTGRQE  178 (277)
T ss_pred             HHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHH
Confidence            5543211000                   011234566799999999999999999999999999   999999887 77


Q ss_pred             HHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         198 LKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       198 l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +.+++.+..+ .+.|||++||+++.+. .||++++|+ .|+.
T Consensus       179 l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~-~G~i  218 (277)
T PRK13642        179 IMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMK-AGEI  218 (277)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEE-CCEE
Confidence            8888876654 4899999999999997 699999998 6664

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.96  E-value=1.3e-30  Score=220.46  Aligned_cols=153  Identities=14%  Similarity=0.149  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh----h-hHHHHHHHhhh-----hhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR----V-AAMSVAQRVSE-----EMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~----~-~~~~~~~~~~~-----~~~~~~  135 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|.+.++|.+...    . ........+.+     .+..++
T Consensus         7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv   86 (190)
T TIGR01166         7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADV   86 (190)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccH
Confidence            5788999999999999999999999999999999999999999998865320    0 00000011111     112244


Q ss_pred             ccceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         136 GQEVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       136 ~~~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+++.+...                   +......++.+..||+||+||++||+||+.+|++|||||   |++++|+.. 
T Consensus        87 ~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~~LD~~~~  163 (190)
T TIGR01166        87 DQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE---PTAGLDPAGR  163 (190)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHH
Confidence            444432110                   000112345667799999999999999999999999999   999999887 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHH
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGK  221 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~  221 (302)
                      ..+.+++....+.+.+|+++||++++
T Consensus       164 ~~~~~~l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       164 EQMLAILRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeecccc
Confidence            77888887765558899999999864

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.96  E-value=5.1e-30  Score=220.60  Aligned_cols=160  Identities=10%  Similarity=0.017  Sum_probs=116.4

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEE-EeecCchhhhHHHHHHHhhhhhccccccceeeeee-
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKA-VACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR-  144 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  144 (302)
                      ++++++.|++|++++|+||||||||||+++|+|+++|++|++. +.+.... .+     .........++.+++.+... 
T Consensus         3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~-~~-----~~~~l~~~ltv~enl~~~~~~   76 (213)
T PRK15177          3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-LG-----ANSFILPGLTGEENARMMASL   76 (213)
T ss_pred             eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec-cc-----cccccCCcCcHHHHHHHHHHH
Confidence            5788999999999999999999999999999999999999986 5543210 00     00000011122222221110 


Q ss_pred             --------------e-cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH-HcCC
Q psy2071         145 --------------F-EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK-QRAD  207 (302)
Q Consensus       145 --------------~-~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~-~~~~  207 (302)
                                    . ......++.+..||+||+||+++|+|++.+|+++||||   |+.++|+.. ..+.+++. ..++
T Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDE---P~~~lD~~~~~~~~~~l~~~~~~  153 (213)
T PRK15177         77 YGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADG---KLYTGDNATQLRMQAALACQLQQ  153 (213)
T ss_pred             cCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECC---CCccCCHHHHHHHHHHHHHHhhC
Confidence                          0 00112345678899999999999999999999999999   999999877 55666553 3333


Q ss_pred             CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         208 LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       208 ~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                        .+++++||+++.+..+||++++|+ .|+.
T Consensus       154 --~~ii~vsH~~~~~~~~~d~i~~l~-~G~i  181 (213)
T PRK15177        154 --KGLIVLTHNPRLIKEHCHAFGVLL-HGKI  181 (213)
T ss_pred             --CcEEEEECCHHHHHHhcCeeEEEE-CCeE
Confidence              467889999999999999999998 6654

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.6e-30  Score=230.52  Aligned_cols=169  Identities=17%  Similarity=0.214  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchh--hhHHHHHH---Hhhh---hh
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRR--VAAMSVAQ---RVSE---EM  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~--~~~~~~~~---~~~~---~~  131 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++     |++|++.+.|.....  ........   .+.+   ..
T Consensus        27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~  106 (260)
T PRK10744         27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF  106 (260)
T ss_pred             EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence            35789999999999999999999999999999999986     478999998865321  00000001   1111   11


Q ss_pred             ccccccceeeeeee-------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         132 DCQLGQEVGYSIRF-------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       132 ~~~~~~~v~~~~~~-------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      ..++.+++.+....                   ...     ...++....||+||+||++||+||+.+|++|||||   |
T Consensus       107 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE---P  183 (260)
T PRK10744        107 PMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDE---P  183 (260)
T ss_pred             cCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcC---C
Confidence            13444444322110                   000     01234556799999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++++|+.. ..+.+++.+..+ +.|||++||+.+.+..+||++++|+ .|+.
T Consensus       184 t~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i  233 (260)
T PRK10744        184 CSALDPISTGRIEELITELKQ-DYTVVIVTHNMQQAARCSDYTAFMY-LGEL  233 (260)
T ss_pred             CccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            99999887 778888877654 6799999999999999999999998 6653

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.7e-30  Score=229.06  Aligned_cols=169  Identities=17%  Similarity=0.169  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhh--h---HHHHHHHhhhh---h
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRV--A---AMSVAQRVSEE---M  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~--~---~~~~~~~~~~~---~  131 (302)
                      .+.+++++.|++|++++|+|+||||||||+++|+|+.++     ++|++.+.|......  .   .......+.+.   .
T Consensus        17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   96 (250)
T PRK14240         17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF   96 (250)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence            357899999999999999999999999999999998763     689999988654210  0   00000111111   1


Q ss_pred             ccccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         132 DCQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       132 ~~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      ..++.+++.+.....                   ..     ...++.+..||+||+||++||+||+.+|++|||||   |
T Consensus        97 ~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---P  173 (250)
T PRK14240         97 PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDE---P  173 (250)
T ss_pred             cccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC---C
Confidence            123444443221000                   00     01134567799999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++++|+.. ..+.+++.+..+ +.||+++||+++.+.++||++++|+ .|+.
T Consensus       174 ~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~v~~l~-~G~i  223 (250)
T PRK14240        174 TSALDPISTLKIEELIQELKK-DYTIVIVTHNMQQASRISDKTAFFL-NGEI  223 (250)
T ss_pred             CccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHHHHHhhCCEEEEEE-CCEE
Confidence            99999887 778888877654 6899999999999999999999998 6654

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.8e-30  Score=231.15  Aligned_cols=170  Identities=14%  Similarity=0.173  Sum_probs=124.8

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchh--hhHHHH---HHHhhhh---
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRR--VAAMSV---AQRVSEE---  130 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~--~~~~~~---~~~~~~~---  130 (302)
                      ..+++++++.|++|++++|+|+||||||||+++|+|+..     |++|.+.+.|.+...  ......   ..++.+.   
T Consensus        34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~  113 (268)
T PRK14248         34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNP  113 (268)
T ss_pred             ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCcc
Confidence            346789999999999999999999999999999999864     689999998865321  000000   0111111   


Q ss_pred             hccccccceeeeeee-------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071         131 MDCQLGQEVGYSIRF-------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE  186 (302)
Q Consensus       131 ~~~~~~~~v~~~~~~-------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~  186 (302)
                      +..++.+++.+....                   ...     ...++.+..||+||+||++||+||+.+|++|||||   
T Consensus       114 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE---  190 (268)
T PRK14248        114 FPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDE---  190 (268)
T ss_pred             CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcC---
Confidence            111333333221100                   000     01235567799999999999999999999999999   


Q ss_pred             CCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         187 RTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       187 p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |++++|+.. ..+.+++....+ +.|||++||+++++..+||++++|+ .|+.
T Consensus       191 Pt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~-~G~i  241 (268)
T PRK14248        191 PASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFFL-NGDL  241 (268)
T ss_pred             CCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEE-CCEE
Confidence            999999887 778888887654 5799999999999999999999998 6653

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.3e-30  Score=228.74  Aligned_cols=165  Identities=16%  Similarity=0.168  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchh-----hhHHHHHHHhhhh---h
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRR-----VAAMSVAQRVSEE---M  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~-----~~~~~~~~~~~~~---~  131 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++     |++|++.+.|.+...     .........+.+.   +
T Consensus        27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~  106 (269)
T PRK14259         27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPF  106 (269)
T ss_pred             EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccc
Confidence            36799999999999999999999999999999999987     589999998864321     0000000111111   1


Q ss_pred             ccccccceeeeeeec-----------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071         132 DCQLGQEVGYSIRFE-----------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL  189 (302)
Q Consensus       132 ~~~~~~~v~~~~~~~-----------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~  189 (302)
                      ..++.+++.+.....                 ..     ...++.+..||+||+||++||+||+.+|++|||||   |++
T Consensus       107 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE---Pt~  183 (269)
T PRK14259        107 PKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDE---PCS  183 (269)
T ss_pred             hhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CCc
Confidence            123444433221100                 00     01244557799999999999999999999999999   999


Q ss_pred             chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      ++|+.. ..+.+++....+ +.|||++||+++++..+||++++|+
T Consensus       184 gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~  227 (269)
T PRK14259        184 ALDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRVSDMTAFFN  227 (269)
T ss_pred             cCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEe
Confidence            999887 778888887654 6899999999999999999999998

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4e-30  Score=247.95  Aligned_cols=169  Identities=19%  Similarity=0.197  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--------HHHHHHhhhhhccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--------MSVAQRVSEEMDCQLG  136 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~  136 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+......        ..+.+........++.
T Consensus        18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   97 (501)
T PRK11288         18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVA   97 (501)
T ss_pred             EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHH
Confidence            35789999999999999999999999999999999999999999998865321100        0011111112223455


Q ss_pred             cceeeeee----------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         137 QEVGYSIR----------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       137 ~~v~~~~~----------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      +++.+...                      +......++.+..|||||+||++||++|+.+|++|||||   ||+++|+.
T Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE---Pt~~LD~~  174 (501)
T PRK11288         98 ENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDE---PTSSLSAR  174 (501)
T ss_pred             HHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC---CCCCCCHH
Confidence            55443210                      000011245567799999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      . ..+.+++....+.|.|||++|||++++..+||++++|+ .|+
T Consensus       175 ~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~-~G~  217 (501)
T PRK11288        175 EIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFK-DGR  217 (501)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence            7 77888888766668899999999999999999999998 554

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.4e-29  Score=244.16  Aligned_cols=168  Identities=15%  Similarity=0.146  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-HH-------HHHHHh---hhhhccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-AM-------SVAQRV---SEEMDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-~~-------~~~~~~---~~~~~~~  134 (302)
                      +.+++++.|++|++++|+||||||||||+++|+|+++|++|.+.+.|....... ..       .+.+..   ......+
T Consensus       268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t  347 (501)
T PRK11288        268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHS  347 (501)
T ss_pred             cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCC
Confidence            578999999999999999999999999999999999999999999876432110 00       001100   0111223


Q ss_pred             cccceeeee-------------------------eecC-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         135 LGQEVGYSI-------------------------RFED-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       135 ~~~~v~~~~-------------------------~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      +.+++.+..                         .+.. ....++.+..|||||+||++||++|+.+|++|||||   ||
T Consensus       348 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDE---Pt  424 (501)
T PRK11288        348 VADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDE---PT  424 (501)
T ss_pred             HHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcC---CC
Confidence            333332210                         0111 012356678899999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +++|+.. ..+.+++....+.|.+||++|||++++..+||++++|+ .|+
T Consensus       425 ~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~-~g~  473 (501)
T PRK11288        425 RGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMR-EGR  473 (501)
T ss_pred             CCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEE-CCE
Confidence            9999887 78888887766668899999999999999999999998 665

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.96  E-value=2.1e-30  Score=226.46  Aligned_cols=169  Identities=17%  Similarity=0.193  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-----HHHHHHhhhhhcccccccee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-----MSVAQRVSEEMDCQLGQEVG  140 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~  140 (302)
                      .++++++.|.+|++++|+|+||||||||+++|+|+++|+.|++.+.|........     ..+.+........++.+++.
T Consensus        14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~   93 (235)
T cd03299          14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA   93 (235)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence            4788999999999999999999999999999999999999999998865322110     00001101111223333333


Q ss_pred             eeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH
Q psy2071         141 YSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE  200 (302)
Q Consensus       141 ~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~  200 (302)
                      +...                   +......++.+..||+||+||++||+|++.+|+++||||   |++++|... ..+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE---Pt~gLD~~~~~~l~~  170 (235)
T cd03299          94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDE---PFSALDVRTKEKLRE  170 (235)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECC---CcccCCHHHHHHHHH
Confidence            2110                   000112345567799999999999999999999999999   999999887 77888


Q ss_pred             HHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         201 VIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       201 ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++.... .+.|++++||+++++.++||++++|+ .|+.
T Consensus       171 ~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~-~G~i  208 (235)
T cd03299         171 ELKKIRKEFGVTVLHVTHDFEEAWALADKVAIML-NGKL  208 (235)
T ss_pred             HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence            8876543 37899999999999999999999998 6664

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.96  E-value=2e-30  Score=226.79  Aligned_cols=170  Identities=18%  Similarity=0.174  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-----HHHHHhhhhhccccccce
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-----SVAQRVSEEMDCQLGQEV  139 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v  139 (302)
                      .+.+++++.+.+|++++|+|+||||||||+++|+|+++|+.|++.++|.+.......     .+.+........++.+++
T Consensus        14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl   93 (237)
T TIGR00968        14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNI   93 (237)
T ss_pred             eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHH
Confidence            367889999999999999999999999999999999999999999988653221100     001111111122333333


Q ss_pred             eeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         140 GYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       140 ~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                      .+...+                   ......++....||+||+||+++|++|+.+|+++||||   |++++|+.. ..+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE---P~~~LD~~~~~~~~  170 (237)
T TIGR00968        94 AFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDE---PFGALDAKVRKELR  170 (237)
T ss_pred             HhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHHHHH
Confidence            322111                   00011244556799999999999999999999999999   999999887 7788


Q ss_pred             HHHHHcCCC-cEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         200 EVIKQRADL-KLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       200 ~ll~~~~~~-~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++.+..+. +.|++++||+.+++..+||++++|+ .|+.
T Consensus       171 ~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~-~g~i  209 (237)
T TIGR00968       171 SWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMS-NGKI  209 (237)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEE-CCEE
Confidence            888765543 7899999999999999999999998 7764

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=2.3e-30  Score=221.92  Aligned_cols=163  Identities=17%  Similarity=0.189  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhh----hhccccccceee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSE----EMDCQLGQEVGY  141 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~  141 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+............+.+    ....++.+++.+
T Consensus        17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~   96 (207)
T PRK13539         17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEF   96 (207)
T ss_pred             EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHH
Confidence            5788999999999999999999999999999999999999999998865321111101111111    112344444332


Q ss_pred             eeeec---------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc
Q psy2071         142 SIRFE---------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR  205 (302)
Q Consensus       142 ~~~~~---------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~  205 (302)
                      ...+.               .....+.....||+||+||++||+|++.+|++|||||   |++++|+.. ..+.+++.+.
T Consensus        97 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE---Pt~~LD~~~~~~l~~~l~~~  173 (207)
T PRK13539         97 WAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDE---PTAALDAAAVALFAELIRAH  173 (207)
T ss_pred             HHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHHHHHHHH
Confidence            11110               0011244567799999999999999999999999999   999999887 7788888765


Q ss_pred             CCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         206 ADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       206 ~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      .+.+.|++++||+.+++..  |+++.+.
T Consensus       174 ~~~~~tiii~sH~~~~~~~--~~~~~~~  199 (207)
T PRK13539        174 LAQGGIVIAATHIPLGLPG--ARELDLG  199 (207)
T ss_pred             HHCCCEEEEEeCCchhhcc--CcEEeec
Confidence            5558899999999999886  7776664

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.96  E-value=5e-30  Score=228.74  Aligned_cols=167  Identities=17%  Similarity=0.190  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhh------hccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEE------MDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v  139 (302)
                      +.+++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.............++.+.      ....+.+++
T Consensus        22 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i  101 (272)
T PRK15056         22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVV  101 (272)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhhe
Confidence            46889999999999999999999999999999999999999999988653211000000111111      011122222


Q ss_pred             eeee-----------------------eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         140 GYSI-----------------------RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       140 ~~~~-----------------------~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+..                       .+......++.+..||+||+||++||+||+.+|++|||||   |++++|+.. 
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE---Pt~~LD~~~~  178 (272)
T PRK15056        102 MMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDE---PFTGVDVKTE  178 (272)
T ss_pred             ecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CCccCCHHHH
Confidence            1100                       0000011244567799999999999999999999999999   999999887 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ..+.+++....+.+.|||++||+.+.+..+||+++++  .|+
T Consensus       179 ~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~--~G~  218 (272)
T PRK15056        179 ARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV--KGT  218 (272)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE--CCE
Confidence            7788888876656889999999999999999998554  465

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.95  E-value=3.2e-30  Score=227.83  Aligned_cols=169  Identities=18%  Similarity=0.186  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc----cCCCEEEeecCchh-------hhHHHHHHHhhhhhccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK----SVGAKAVACTQPRR-------VAAMSVAQRVSEEMDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~----~~G~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~  134 (302)
                      +++++++.|.+|++++|+|+||||||||+++|+|+++|    ++|++.++|.+...       ++..............+
T Consensus        18 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~   97 (254)
T PRK10418         18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHT   97 (254)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcccc
Confidence            57889999999999999999999999999999999999    89999998865321       11111100000000011


Q ss_pred             cccceee----------------eeeecCCC----CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         135 LGQEVGY----------------SIRFEDCS----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       135 ~~~~v~~----------------~~~~~~~~----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      +.+++.+                .+......    ..++....||+||+||++||+||+.+|++|||||   |++++|+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDE---Pt~~LD~~  174 (254)
T PRK10418         98 MHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADE---PTTDLDVV  174 (254)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeC---CCcccCHH
Confidence            1111100                00000111    1245567899999999999999999999999999   99999987


Q ss_pred             H-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         195 M-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       195 ~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      . ..+.+++.... +.+.||+++||+++.+..+||++++|+ .|+.
T Consensus       175 ~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~-~G~i  219 (254)
T PRK10418        175 AQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMS-HGRI  219 (254)
T ss_pred             HHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence            7 77778877654 347899999999999999999999998 6654

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.1e-30  Score=227.38  Aligned_cols=168  Identities=18%  Similarity=0.186  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhh--hHHHH---HHHhhh---hhc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRV--AAMSV---AQRVSE---EMD  132 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~--~~~~~---~~~~~~---~~~  132 (302)
                      +.+++++.|++|++++|+|+||||||||+++|+|+++|     ++|++.++|.+....  .....   ...+.+   ...
T Consensus        18 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   97 (250)
T PRK14262         18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP   97 (250)
T ss_pred             eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc
Confidence            57899999999999999999999999999999999874     889999988653210  00000   011111   111


Q ss_pred             cccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         133 CQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       133 ~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      .++.+++.+.....                   ..     ...+..+..||+||+||++||+||+.+|++|||||   |+
T Consensus        98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDE---P~  174 (250)
T PRK14262         98 MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDE---PT  174 (250)
T ss_pred             ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeC---Cc
Confidence            23333332211000                   00     01234567799999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++|+.. ..+.+++.+..+ +.|++++||+.+.+..+||++++|+ .|+.
T Consensus       175 ~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~-~G~i  223 (250)
T PRK14262        175 SALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFMY-RGEL  223 (250)
T ss_pred             cccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            9999887 778888887654 6799999999999999999999998 6654

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.95  E-value=1e-29  Score=226.40  Aligned_cols=169  Identities=15%  Similarity=0.171  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc--------CCCEEEeecCchhhhHHHH---HHHhhh----h
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS--------VGAKAVACTQPRRVAAMSV---AQRVSE----E  130 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~--------~G~~~i~~~~~~~~~~~~~---~~~~~~----~  130 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|+        +|++.++|...........   ...+.+    .
T Consensus        16 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~   95 (272)
T PRK13547         16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPA   95 (272)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCC
Confidence            578999999999999999999999999999999999998        8999998865432111110   011111    1


Q ss_pred             hccccccceeeeeeec-----------------------CCCCccccccccCHHHHHHHhccccCC---------CCCcE
Q psy2071         131 MDCQLGQEVGYSIRFE-----------------------DCSSPKTVLKYMTDGMLLREGMSDPML---------ENYQV  178 (302)
Q Consensus       131 ~~~~~~~~v~~~~~~~-----------------------~~~~~~~~~~~lS~G~~qr~~la~al~---------~~p~l  178 (302)
                      +..++.+++.+.....                       .....++.+..||+||+||+++|++|+         .+|++
T Consensus        96 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~l  175 (272)
T PRK13547         96 FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRY  175 (272)
T ss_pred             CCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCE
Confidence            2334555543321000                       000123455679999999999999999         59999


Q ss_pred             EEEcCCCCCCcchHHHH-HHHHHHHHHcCCC-cEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         179 ILLDEAHERTLATDILM-GVLKEVIKQRADL-KLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       179 liLDE~~~p~~~lD~~~-~~l~~ll~~~~~~-~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |||||   |++++|+.. ..+.+++.+..+. +.|++++||+.+.+..+||++++|+ .|+.
T Consensus       176 llLDE---Pt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~-~G~i  233 (272)
T PRK13547        176 LLLDE---PTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLA-DGAI  233 (272)
T ss_pred             EEEcC---ccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE-CCeE
Confidence            99999   999999887 7788888766543 7899999999999999999999998 6653

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.95  E-value=3.4e-30  Score=222.93  Aligned_cols=167  Identities=18%  Similarity=0.125  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------H----HHHHHhhhhhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------M----SVAQRVSEEMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~----~~~~~~~~~~~~~~  135 (302)
                      +.+++++.+++|++++|+|+||||||||+++|+|+++|++|++.++|........      .    .+.+........++
T Consensus        20 il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~   99 (220)
T TIGR02982        20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTA   99 (220)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCH
Confidence            5788999999999999999999999999999999999999999998875432110      0    00111111112344


Q ss_pred             ccceeeeeeec--------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         136 GQEVGYSIRFE--------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       136 ~~~v~~~~~~~--------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+++.+...+.                    .....++.+..||+||+||++||++++.+|++|||||   |+.++|+..
T Consensus       100 ~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDE---P~~~LD~~~  176 (220)
T TIGR02982       100 RQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADE---PTAALDSKS  176 (220)
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCcCCHHH
Confidence            43333221110                    0011234566799999999999999999999999999   999999877


Q ss_pred             -HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         196 -GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       196 -~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                       ..+.++++...+ .+.|++++||+++. .++||++++|+ .|+
T Consensus       177 ~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~-~g~  218 (220)
T TIGR02982       177 GRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHME-DGK  218 (220)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEE-CCE
Confidence             777888876543 47999999999984 58999999997 554

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.8e-30  Score=226.40  Aligned_cols=169  Identities=16%  Similarity=0.105  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-----CCCEEEeecCchh--h---h----HHHHHHHhhhh
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-----VGAKAVACTQPRR--V---A----AMSVAQRVSEE  130 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-----~G~~~i~~~~~~~--~---~----~~~~~~~~~~~  130 (302)
                      .+.+++++.|++|++++|+|+||||||||+++|+|+++|+     +|++.+.|.....  .   .    ...+.+.....
T Consensus        18 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   97 (252)
T PRK14272         18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPF   97 (252)
T ss_pred             EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccC
Confidence            3578999999999999999999999999999999998864     7999998854321  0   0    00001111111


Q ss_pred             hccccccceeeeee--------------------ecC----CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071         131 MDCQLGQEVGYSIR--------------------FED----CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE  186 (302)
Q Consensus       131 ~~~~~~~~v~~~~~--------------------~~~----~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~  186 (302)
                      ...++.+++.+...                    +..    ....++.+..||+||+||++||++|+.+|++|||||   
T Consensus        98 ~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---  174 (252)
T PRK14272         98 PTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDE---  174 (252)
T ss_pred             cCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---
Confidence            11233333321110                    000    011245567899999999999999999999999999   


Q ss_pred             CCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         187 RTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       187 p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |++++|+.. ..+.+++++..+ +.|++++||+.+.+..+||++++|+ .|+.
T Consensus       175 P~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i  225 (252)
T PRK14272        175 PTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQAARVSDTTSFFL-VGDL  225 (252)
T ss_pred             CCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            999999887 778888887654 6899999999999999999999998 6654

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.5e-30  Score=229.06  Aligned_cols=165  Identities=15%  Similarity=0.122  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchh--h---hHH----HHHHHhhhh
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRR--V---AAM----SVAQRVSEE  130 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~--~---~~~----~~~~~~~~~  130 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|     ++|++.++|.+...  .   ...    .+.+.....
T Consensus        18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   97 (258)
T PRK14241         18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF   97 (258)
T ss_pred             eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence            467899999999999999999999999999999999874     69999998865311  0   000    001111111


Q ss_pred             hccccccceeeeee--------------------ecC----CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071         131 MDCQLGQEVGYSIR--------------------FED----CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE  186 (302)
Q Consensus       131 ~~~~~~~~v~~~~~--------------------~~~----~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~  186 (302)
                      ...++.+++.+...                    +..    ....++.+..||+||+||++||+||+.+|++|||||   
T Consensus        98 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---  174 (258)
T PRK14241         98 PTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDE---  174 (258)
T ss_pred             CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---
Confidence            12233333322110                    000    011234567799999999999999999999999999   


Q ss_pred             CCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         187 RTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       187 p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      |++++|+.. ..+.+++....+ +.|||++||+++++.++||++++|+
T Consensus       175 Pt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~~~~~~d~i~~l~  221 (258)
T PRK14241        175 PCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQAARVSDQTAFFN  221 (258)
T ss_pred             CCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEe
Confidence            999999887 778888877654 5799999999999999999999996

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.3e-30  Score=254.00  Aligned_cols=169  Identities=20%  Similarity=0.224  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch----------hhhH---HHH----HHHhh
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR----------RVAA---MSV----AQRVS  128 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~----------~~~~---~~~----~~~~~  128 (302)
                      ++++|++.|++|++++|+|+||||||||+++|+|+++|++|.+.+.|....          ....   ...    ...+.
T Consensus        31 ~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~  110 (623)
T PRK10261         31 AVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIF  110 (623)
T ss_pred             EEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEE
Confidence            578999999999999999999999999999999999999999988764210          0000   000    01111


Q ss_pred             h------hhccccccceeeeeee-------------------cCCC----CccccccccCHHHHHHHhccccCCCCCcEE
Q psy2071         129 E------EMDCQLGQEVGYSIRF-------------------EDCS----SPKTVLKYMTDGMLLREGMSDPMLENYQVI  179 (302)
Q Consensus       129 ~------~~~~~~~~~v~~~~~~-------------------~~~~----~~~~~~~~lS~G~~qr~~la~al~~~p~ll  179 (302)
                      +      ....++.+++.+..+.                   ....    ..+..+..|||||+||++||+||+.+|++|
T Consensus       111 Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lL  190 (623)
T PRK10261        111 QEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVL  190 (623)
T ss_pred             eCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEE
Confidence            1      1223555555432111                   0111    124567789999999999999999999999


Q ss_pred             EEcCCCCCCcchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         180 LLDEAHERTLATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       180 iLDE~~~p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ||||   ||+++|+.. ..+.++++.+. +.|.|||++|||++.+.++||++++|+ .|+.
T Consensus       191 llDE---Pt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~-~G~i  247 (623)
T PRK10261        191 IADE---PTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY-QGEA  247 (623)
T ss_pred             EEeC---CCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee-CCee
Confidence            9999   999999888 77888888765 448899999999999999999999998 5553

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.95  E-value=4.7e-30  Score=228.37  Aligned_cols=169  Identities=16%  Similarity=0.176  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------HHHHHHhhhh------hcc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------MSVAQRVSEE------MDC  133 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~~~~~~~~~~------~~~  133 (302)
                      +.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|........      .....++.+.      ...
T Consensus        27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~  106 (268)
T PRK10419         27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRK  106 (268)
T ss_pred             eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCC
Confidence            5789999999999999999999999999999999999999999998865422110      0000011110      011


Q ss_pred             ccccceeeee-------------------eecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071         134 QLGQEVGYSI-------------------RFEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD  192 (302)
Q Consensus       134 ~~~~~v~~~~-------------------~~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD  192 (302)
                      ++.+++.+..                   .....  ...++....||+||+||++||+||+.+|++|||||   |++++|
T Consensus       107 t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDE---Pt~~LD  183 (268)
T PRK10419        107 TVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDE---AVSNLD  183 (268)
T ss_pred             CHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeC---CCcccC
Confidence            2222221100                   00011  12245667799999999999999999999999999   999999


Q ss_pred             HHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         193 ILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       193 ~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ... ..+.+++....+ .+.|+|++||+.+.+..+||++++|+ .|+.
T Consensus       184 ~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~-~G~i  230 (268)
T PRK10419        184 LVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMD-NGQI  230 (268)
T ss_pred             HHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence            877 677787776543 37899999999999999999999998 6654

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.95  E-value=6.2e-30  Score=226.72  Aligned_cols=169  Identities=18%  Similarity=0.150  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch---h---hhHHHHHHHhhhh---hccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR---R---VAAMSVAQRVSEE---MDCQLG  136 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~---~---~~~~~~~~~~~~~---~~~~~~  136 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|.+.+.|....   .   ....++...+...   ......
T Consensus        39 il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~  118 (264)
T PRK13546         39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRK  118 (264)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHH
Confidence            468899999999999999999999999999999999999999988773110   0   0001111111100   000000


Q ss_pred             ---cceeeeeee-cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEE
Q psy2071         137 ---QEVGYSIRF-EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLV  211 (302)
Q Consensus       137 ---~~v~~~~~~-~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~  211 (302)
                         ..+...+.. ......+..+..||+||+||++||+|++.+|++|||||   |++++|+.. ..+.+++....+.+.|
T Consensus       119 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDE---Pt~gLD~~~~~~l~~~L~~~~~~g~t  195 (264)
T PRK13546        119 EIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDE---ALSVGDQTFAQKCLDKIYEFKEQNKT  195 (264)
T ss_pred             HHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeC---ccccCCHHHHHHHHHHHHHHHHCCCE
Confidence               000000111 11112345677899999999999999999999999999   999999876 6777777765556889


Q ss_pred             EEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         212 IMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       212 ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +|++||+.+.+..+||++++|+ .|+.
T Consensus       196 iIiisH~~~~i~~~~d~i~~l~-~G~i  221 (264)
T PRK13546        196 IFFVSHNLGQVRQFCTKIAWIE-GGKL  221 (264)
T ss_pred             EEEEcCCHHHHHHHcCEEEEEE-CCEE
Confidence            9999999999999999999998 6654

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.95  E-value=3e-29  Score=217.06  Aligned_cols=167  Identities=13%  Similarity=0.183  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~v  139 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|..............   +.+   .+..++.+++
T Consensus        19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl   98 (221)
T cd03244          19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL   98 (221)
T ss_pred             cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHh
Confidence            5889999999999999999999999999999999999999999998865422111111111   111   1122344443


Q ss_pred             eeeeeec-----------CC------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         140 GYSIRFE-----------DC------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       140 ~~~~~~~-----------~~------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+.....           ..            .........||+||+||++||++|+.+|+++||||   |++++|+.. 
T Consensus        99 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE---P~~~LD~~~~  175 (221)
T cd03244          99 DPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDE---ATASVDPETD  175 (221)
T ss_pred             CcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---ccccCCHHHH
Confidence            3211000           00            00123567799999999999999999999999999   999999887 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ..+.+++++... +.|++++||+.+.+.. ||++++|+ .|+.
T Consensus       176 ~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~-~g~~  215 (221)
T cd03244         176 ALIQKTIREAFK-DCTVLTIAHRLDTIID-SDRILVLD-KGRV  215 (221)
T ss_pred             HHHHHHHHHhcC-CCEEEEEeCCHHHHhh-CCEEEEEE-CCeE
Confidence            778888887654 5799999999999975 99999998 6653

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.95  E-value=1.4e-29  Score=216.54  Aligned_cols=159  Identities=16%  Similarity=0.181  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +.+++++.|++|++++|+||||||||||+++|+|+.+|++|++.+.|.    ++.......+   +..++.+++.+...+
T Consensus        20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~----i~~~~q~~~l---~~~t~~enl~~~~~~   92 (204)
T cd03250          20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS----IAYVSQEPWI---QNGTIRENILFGKPF   92 (204)
T ss_pred             eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCE----EEEEecCchh---ccCcHHHHhccCCCc
Confidence            578999999999999999999999999999999999999999988761    1110000000   011222222211000


Q ss_pred             ------------------cC-----CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH-
Q psy2071         146 ------------------ED-----CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE-  200 (302)
Q Consensus       146 ------------------~~-----~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~-  200 (302)
                                        ..     ..........||+||+||++||++|+.+|+++||||   |++++|+.. ..+.+ 
T Consensus        93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDE---P~~~LD~~~~~~l~~~  169 (204)
T cd03250          93 DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDD---PLSAVDAHVGRHIFEN  169 (204)
T ss_pred             CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---ccccCCHHHHHHHHHH
Confidence                              00     001123457799999999999999999999999999   999999877 55655 


Q ss_pred             HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecC
Q psy2071         201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG  236 (302)
Q Consensus       201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g  236 (302)
                      ++....+.+.|||++||+.+.+.. ||++++|+ .|
T Consensus       170 ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~-~G  203 (204)
T cd03250         170 CILGLLLNNKTRILVTHQLQLLPH-ADQIVVLD-NG  203 (204)
T ss_pred             HHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEe-CC
Confidence            566554458899999999999987 99999887 44

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.3e-29  Score=244.70  Aligned_cols=170  Identities=16%  Similarity=0.212  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-ccCCCEEEeecCchhhhH-HHH---HHHhhh-------hhc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-KSVGAKAVACTQPRRVAA-MSV---AQRVSE-------EMD  132 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-~~~G~~~i~~~~~~~~~~-~~~---~~~~~~-------~~~  132 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++ |++|.+.+.|.+...... ...   ..++.+       ...
T Consensus       276 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~  355 (506)
T PRK13549        276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPV  355 (506)
T ss_pred             ccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCC
Confidence            36789999999999999999999999999999999998 599999998864321100 000   011111       112


Q ss_pred             cccccceeeee------------------------eecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         133 CQLGQEVGYSI------------------------RFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       133 ~~~~~~v~~~~------------------------~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      .++.+++.+..                        ++... ...++.+..|||||+||++||+||+.+|++|||||   |
T Consensus       356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDE---P  432 (506)
T PRK13549        356 MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDE---P  432 (506)
T ss_pred             CCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcC---C
Confidence            33344332210                        00000 12345677899999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |+++|+.. ..+.+++....+.|.|||++|||++++.++||++++|+ .|+.
T Consensus       433 t~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~-~G~i  483 (506)
T PRK13549        433 TRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMH-EGKL  483 (506)
T ss_pred             CCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEE-CCEE
Confidence            99999887 77888888766668999999999999999999999998 6654

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.3e-30  Score=226.75  Aligned_cols=169  Identities=17%  Similarity=0.141  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc--c---cCCCEEEeecCchhh-----hHHH----HHHHhhhh
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS--K---SVGAKAVACTQPRRV-----AAMS----VAQRVSEE  130 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~--~---~~G~~~i~~~~~~~~-----~~~~----~~~~~~~~  130 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++  |   ++|++.+.|.+....     ....    +.+.....
T Consensus        18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~   97 (252)
T PRK14256         18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF   97 (252)
T ss_pred             eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCC
Confidence            35789999999999999999999999999999999986  4   589999988654211     0000    01111111


Q ss_pred             hccccccceeeeeee-------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071         131 MDCQLGQEVGYSIRF-------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE  186 (302)
Q Consensus       131 ~~~~~~~~v~~~~~~-------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~  186 (302)
                      ...++.+++.+....                   ...     ...++.+..||+||+||++||+||+.+|++|||||   
T Consensus        98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE---  174 (252)
T PRK14256         98 PAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDE---  174 (252)
T ss_pred             CcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcC---
Confidence            123334433221100                   000     01124466799999999999999999999999999   


Q ss_pred             CCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         187 RTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       187 p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |++++|+.. ..+.+++.+..+ +.|||++||+++++.++||++++|+ .|+.
T Consensus       175 P~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~-~G~i  225 (252)
T PRK14256        175 PASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFY-MGDL  225 (252)
T ss_pred             CcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEE-CCEE
Confidence            999999887 778888877655 5799999999999999999999998 6653

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.95  E-value=7.1e-30  Score=246.26  Aligned_cols=169  Identities=11%  Similarity=0.135  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc--cCCCEEEeecCchhhhH--------HHHHHHhhhhhccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK--SVGAKAVACTQPRRVAA--------MSVAQRVSEEMDCQ  134 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~--~~G~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~  134 (302)
                      .+++++++.+++|++++|+||||||||||+++|+|+++|  ++|.+.+.|.+......        ..+.+........+
T Consensus        15 ~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   94 (500)
T TIGR02633        15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELS   94 (500)
T ss_pred             EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCc
Confidence            357899999999999999999999999999999999986  79999998865322110        01111111112234


Q ss_pred             cccceeeeeee----------------------cCCC-C-ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071         135 LGQEVGYSIRF----------------------EDCS-S-PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA  190 (302)
Q Consensus       135 ~~~~v~~~~~~----------------------~~~~-~-~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~  190 (302)
                      +.+++.+....                      .... . .++.+..|||||+||++||+||+.+|++|||||   ||++
T Consensus        95 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDE---Pt~~  171 (500)
T TIGR02633        95 VAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDE---PSSS  171 (500)
T ss_pred             HHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeC---CCCC
Confidence            44444322110                      0010 1 134567899999999999999999999999999   9999


Q ss_pred             hHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         191 TDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       191 lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +|+.. ..+.+++.+..+.|.|||++|||++++..+||++++|+ .|+
T Consensus       172 LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~-~G~  218 (500)
T TIGR02633       172 LTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIR-DGQ  218 (500)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEe-CCe
Confidence            99887 78888888766668899999999999999999999998 554

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.5e-30  Score=227.39  Aligned_cols=168  Identities=14%  Similarity=0.143  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhh--hHHHHH---HHhhhh---hc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRV--AAMSVA---QRVSEE---MD  132 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~--~~~~~~---~~~~~~---~~  132 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|     ++|++.+.|.+....  ......   ..+.+.   ..
T Consensus        34 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  113 (267)
T PRK14235         34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP  113 (267)
T ss_pred             EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCC
Confidence            57889999999999999999999999999999999874     899999988654210  000111   111111   11


Q ss_pred             cccccceeeeeee--------------------cCCC-----CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         133 CQLGQEVGYSIRF--------------------EDCS-----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       133 ~~~~~~v~~~~~~--------------------~~~~-----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      .++.+++.+....                    ....     ..++....||+||+||++||+||+.+|++|||||   |
T Consensus       114 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE---P  190 (267)
T PRK14235        114 KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDE---P  190 (267)
T ss_pred             CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---C
Confidence            2444444321100                    0000     1134567799999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++++|+.. ..+.+++....+ +.|||++||+++.+..+||++++|+ .|+.
T Consensus       191 t~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~-~G~i  240 (267)
T PRK14235        191 CSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFH-LGNL  240 (267)
T ss_pred             CcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEE-CCEE
Confidence            99999887 778888887655 5799999999999999999999998 6653

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=5.9e-30  Score=225.45  Aligned_cols=169  Identities=17%  Similarity=0.170  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchh-h---hHHHHHHHhhhh---hc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRR-V---AAMSVAQRVSEE---MD  132 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~-~---~~~~~~~~~~~~---~~  132 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|     ++|++.+.|..... .   .......++.+.   +.
T Consensus        17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~   96 (249)
T PRK14253         17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP   96 (249)
T ss_pred             eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc
Confidence            367899999999999999999999999999999999886     58999998854311 0   000001111111   11


Q ss_pred             cccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         133 CQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       133 ~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      .++.+++.+.....                   ..     ...++....||+||+||++||+||+.+|++|||||   |+
T Consensus        97 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---P~  173 (249)
T PRK14253         97 MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDE---PT  173 (249)
T ss_pred             ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CC
Confidence            23333333211000                   00     01234456799999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++|+.. ..+.+++.+..+ +.||+++||+.+.+..+||++++|+ .|+.
T Consensus       174 ~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~-~G~i  222 (249)
T PRK14253        174 SALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTAFFL-MGEL  222 (249)
T ss_pred             ccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence            9999887 778888887655 4799999999999999999999998 6664

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=5.6e-30  Score=233.52  Aligned_cols=176  Identities=18%  Similarity=0.232  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchh--hhHHHHHH---Hhhh---hhc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRR--VAAMSVAQ---RVSE---EMD  132 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~--~~~~~~~~---~~~~---~~~  132 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+..     |++|.+.++|.+...  ........   .+.+   .+.
T Consensus        97 ~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~  176 (329)
T PRK14257         97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE  176 (329)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC
Confidence            6899999999999999999999999999999999986     568999998876531  11011111   1111   122


Q ss_pred             cccccceeeeeeec-----------------C--C-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         133 CQLGQEVGYSIRFE-----------------D--C-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       133 ~~~~~~v~~~~~~~-----------------~--~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      .++.+++.+...+.                 .  .     ...+.....|||||+||++||||++.+|++|||||   |+
T Consensus       177 ~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDE---Pt  253 (329)
T PRK14257        177 MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDE---PT  253 (329)
T ss_pred             CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeC---Cc
Confidence            34445554322110                 0  0     01234556799999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC----Cccceeec
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYT  246 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~  246 (302)
                      +++|+.. ..+.+++....+ +.|+|++||+++.+.++||++++|+ .|+.    .|.+++..
T Consensus       254 s~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~-~G~i~e~g~~~~l~~~  314 (329)
T PRK14257        254 SALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFY-QGWIEEAGETKTIFIH  314 (329)
T ss_pred             ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEeCCHHHHhcC
Confidence            9999877 778888887655 5899999999999999999999998 6653    44444433

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2e-30  Score=230.70  Aligned_cols=170  Identities=15%  Similarity=0.150  Sum_probs=126.1

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchhh--hHHHHH---HHhhh---h
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRRV--AAMSVA---QRVSE---E  130 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~~--~~~~~~---~~~~~---~  130 (302)
                      ..+++++++.|.+|++++|+|+||||||||+++|+|+++     |++|++.++|.+....  ......   ..+.+   .
T Consensus        33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~  112 (267)
T PRK14237         33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP  112 (267)
T ss_pred             eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence            346789999999999999999999999999999999986     5799999988654210  000000   11111   1


Q ss_pred             hccccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071         131 MDCQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE  186 (302)
Q Consensus       131 ~~~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~  186 (302)
                      +..++.+++.+.....                   ..     ...+.....||+||+||++||+|++.+|++|||||   
T Consensus       113 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE---  189 (267)
T PRK14237        113 FAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDE---  189 (267)
T ss_pred             ccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---
Confidence            1124444443321100                   00     01234567799999999999999999999999999   


Q ss_pred             CCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         187 RTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       187 p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |++++|+.. ..+.+++.+..+ +.+||++||+.+++.++||++++|+ .|+.
T Consensus       190 Pt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~-~G~i  240 (267)
T PRK14237        190 PASALDPISTMQLEETMFELKK-NYTIIIVTHNMQQAARASDYTAFFY-LGDL  240 (267)
T ss_pred             CcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhcCEEEEEE-CCEE
Confidence            999999877 778888877654 6899999999999999999999998 6653

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=9e-30  Score=224.57  Aligned_cols=168  Identities=16%  Similarity=0.139  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhh-----hHHHHHHHhhh---hhc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRV-----AAMSVAQRVSE---EMD  132 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~-----~~~~~~~~~~~---~~~  132 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+.+|     ++|++.+.|.+....     ........+.+   ...
T Consensus        19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~   98 (251)
T PRK14270         19 ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP   98 (251)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC
Confidence            57899999999999999999999999999999999875     789999988654210     00000011111   111


Q ss_pred             cccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         133 CQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       133 ~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      .++.+++.+.....                   ..     ...+.....||+||+||++||++++.+|++|||||   |+
T Consensus        99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---P~  175 (251)
T PRK14270         99 MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDE---PT  175 (251)
T ss_pred             CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---Cc
Confidence            23334433211000                   00     01234567899999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++|+.. ..+.+++....+ +.|++++||+.+.+.++||++++|+ .|+.
T Consensus       176 ~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~-~G~i  224 (251)
T PRK14270        176 SALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFL-MGDL  224 (251)
T ss_pred             ccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEE-CCeE
Confidence            9999887 778888876655 4799999999999999999999998 6664

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=5.6e-30  Score=225.85  Aligned_cols=169  Identities=15%  Similarity=0.159  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchh--hh---HHHHHHHhhh---hh
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRR--VA---AMSVAQRVSE---EM  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~--~~---~~~~~~~~~~---~~  131 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++     |++|++.++|.+...  ..   .......+.+   ..
T Consensus        18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   97 (251)
T PRK14251         18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPF   97 (251)
T ss_pred             eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccC
Confidence            35788999999999999999999999999999999986     478999998865321  00   0000001111   11


Q ss_pred             ccccccceeeeee-------------------ecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         132 DCQLGQEVGYSIR-------------------FEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       132 ~~~~~~~v~~~~~-------------------~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      ..++.+++.+...                   ....     ...+.....||+||+||++||+||+.+|++|||||   |
T Consensus        98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDE---P  174 (251)
T PRK14251         98 PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDE---P  174 (251)
T ss_pred             CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecC---C
Confidence            1233333322110                   0000     11234567799999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++++|+.. ..+.+++.+..+ +.|||++||+++.+.++||++++|+ .|+.
T Consensus       175 ~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~-~G~i  224 (251)
T PRK14251        175 TSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQAGRISDQTAFLM-NGDL  224 (251)
T ss_pred             CccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHHhhcCEEEEEE-CCEE
Confidence            99999887 778888876644 5899999999999999999999998 6664

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.7e-30  Score=228.76  Aligned_cols=169  Identities=16%  Similarity=0.147  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchh--hhHHHHH---HHhhhh---h
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRR--VAAMSVA---QRVSEE---M  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~--~~~~~~~---~~~~~~---~  131 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++     |++|++.++|.+...  .......   .++.+.   +
T Consensus        38 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~  117 (271)
T PRK14238         38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPF  117 (271)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccc
Confidence            36789999999999999999999999999999999987     689999998864321  0000000   011111   1


Q ss_pred             ccccccceeeeeeecC------------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         132 DCQLGQEVGYSIRFED------------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       132 ~~~~~~~v~~~~~~~~------------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      ..++.+++.+......                        ....+.....||+||+||++||++|+.+|++|||||   |
T Consensus       118 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDE---P  194 (271)
T PRK14238        118 PKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDE---P  194 (271)
T ss_pred             cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---C
Confidence            1233344332110000                        001234566799999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++++|+.. ..+.+++....+ +.|+|++||+++++..+||++++|+ .|+.
T Consensus       195 t~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~-~G~i  244 (271)
T PRK14238        195 TSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFFL-NGYV  244 (271)
T ss_pred             CCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEE-CCEE
Confidence            99999887 778888877655 6899999999999999999999998 6654

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=9.6e-30  Score=224.47  Aligned_cols=168  Identities=17%  Similarity=0.163  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc--cc---cCCCEEEeecCchhh-----hHHHHHHHhhh---hhc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY--SK---SVGAKAVACTQPRRV-----AAMSVAQRVSE---EMD  132 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~--~~---~~G~~~i~~~~~~~~-----~~~~~~~~~~~---~~~  132 (302)
                      +.+++++.|++|++++|+|+||||||||+++|+|+.  .|   ++|++.+.|......     ........+.+   .+.
T Consensus        20 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~   99 (252)
T PRK14239         20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP   99 (252)
T ss_pred             eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc
Confidence            578999999999999999999999999999999985  36   489999988653210     00000011111   111


Q ss_pred             cccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         133 CQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       133 ~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      .++.+++.+.....                   ..     ...++.+..||+||+||++||+||+.+|++|||||   |+
T Consensus       100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt  176 (252)
T PRK14239        100 MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDE---PT  176 (252)
T ss_pred             CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---Cc
Confidence            34444443211000                   00     01234567799999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++|+.. ..+.+++....+ +.|||++||+++++..+||++++|+ .|+.
T Consensus       177 ~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~-~G~i  225 (252)
T PRK14239        177 SALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFL-DGDL  225 (252)
T ss_pred             cccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence            9999887 778888887654 5799999999999999999999998 6654

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.95  E-value=2e-29  Score=243.04  Aligned_cols=170  Identities=17%  Similarity=0.215  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-cCCCEEEeecCchhhhH-HHH---HHHhhhh-------hc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-SVGAKAVACTQPRRVAA-MSV---AQRVSEE-------MD  132 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-~~G~~~i~~~~~~~~~~-~~~---~~~~~~~-------~~  132 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++| ++|++.+.|........ ...   ..++.+.       ..
T Consensus       274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~  353 (500)
T TIGR02633       274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPI  353 (500)
T ss_pred             cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCC
Confidence            368899999999999999999999999999999999985 89999998854321000 000   0111111       11


Q ss_pred             cccccceeeee------------------------eecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         133 CQLGQEVGYSI------------------------RFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       133 ~~~~~~v~~~~------------------------~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      .++.+++.+..                        ++... ...++.+..|||||+||++||++|+.+|++|||||   |
T Consensus       354 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE---P  430 (500)
T TIGR02633       354 LGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDE---P  430 (500)
T ss_pred             CCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcC---C
Confidence            23333332210                        01110 12345677899999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |+++|+.. ..+.+++....+.+.|||++|||++++.++||++++|+ .|+.
T Consensus       431 t~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~-~G~i  481 (500)
T TIGR02633       431 TRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIG-EGKL  481 (500)
T ss_pred             CCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE-CCEE
Confidence            99999887 77888887766668899999999999999999999998 6653

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.1e-29  Score=223.98  Aligned_cols=168  Identities=15%  Similarity=0.108  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-----CCCEEEeecCchhhh--H---HHHHHHhhhh---hc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-----VGAKAVACTQPRRVA--A---MSVAQRVSEE---MD  132 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-----~G~~~i~~~~~~~~~--~---~~~~~~~~~~---~~  132 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|+     .|.+.+.|.+.....  .   .....++.+.   ..
T Consensus        19 il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~   98 (251)
T PRK14249         19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFP   98 (251)
T ss_pred             EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCc
Confidence            578999999999999999999999999999999999987     599998876542110  0   0000111111   11


Q ss_pred             cccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         133 CQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       133 ~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      .++.+++.+.....                   ..     ...++....||+||+||++||+||+.+|++|||||   |+
T Consensus        99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE---Pt  175 (251)
T PRK14249         99 KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDE---PC  175 (251)
T ss_pred             CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CC
Confidence            23333333221100                   00     01234566799999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++|+.. ..+.+++.... .+.|||++||+++.+..+||++++|+ .|+.
T Consensus       176 ~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~-~G~i  224 (251)
T PRK14249        176 SALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWTGFLL-TGDL  224 (251)
T ss_pred             ccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEe-CCeE
Confidence            9999887 77888888764 37899999999999999999999998 6654

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=7.7e-30  Score=228.98  Aligned_cols=169  Identities=15%  Similarity=0.141  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchhh-----hHHHHHHHhhhh---h
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRRV-----AAMSVAQRVSEE---M  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~~-----~~~~~~~~~~~~---~  131 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+..     |++|.+.++|......     .......++.+.   .
T Consensus        53 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~  132 (286)
T PRK14275         53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPF  132 (286)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCC
Confidence            36789999999999999999999999999999999864     4899999988643210     000000111111   1


Q ss_pred             ccccccceeeeeee-------------------cC-----CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         132 DCQLGQEVGYSIRF-------------------ED-----CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       132 ~~~~~~~v~~~~~~-------------------~~-----~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      ..++.+++.+....                   ..     ....++.+..||+||+||++||+||+.+|++|||||   |
T Consensus       133 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDE---P  209 (286)
T PRK14275        133 PKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDE---P  209 (286)
T ss_pred             ccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---C
Confidence            11333333321100                   00     011244567899999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++++|+.. ..+.++++.... +.+||++||+.+++..+||++++|+ .|+.
T Consensus       210 t~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~-~G~i  259 (286)
T PRK14275        210 TSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTMFFY-EGVL  259 (286)
T ss_pred             CccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            99999887 778888877654 5799999999999999999999998 6654

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.95  E-value=6.5e-30  Score=225.56  Aligned_cols=170  Identities=15%  Similarity=0.093  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc--ccccCCCEEEeecCchhhhHH--------HHHHHhhhhhccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE--YSKSVGAKAVACTQPRRVAAM--------SVAQRVSEEMDCQ  134 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~--~~~~~G~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~  134 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+  ++|++|++.+.|.+.......        .+.+........+
T Consensus        21 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~  100 (252)
T CHL00131         21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVS  100 (252)
T ss_pred             EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccccccccc
Confidence            368899999999999999999999999999999998  578999999987653221100        0001000000011


Q ss_pred             cccceee-------------------------eeeecCCC--Ccccccc-ccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071         135 LGQEVGY-------------------------SIRFEDCS--SPKTVLK-YMTDGMLLREGMSDPMLENYQVILLDEAHE  186 (302)
Q Consensus       135 ~~~~v~~-------------------------~~~~~~~~--~~~~~~~-~lS~G~~qr~~la~al~~~p~lliLDE~~~  186 (302)
                      ..+++.+                         .+......  ..++.+. .||+||+||++||+||+.+|++|||||   
T Consensus       101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE---  177 (252)
T CHL00131        101 NADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDE---  177 (252)
T ss_pred             HHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcC---
Confidence            1111100                         00000111  1234444 499999999999999999999999999   


Q ss_pred             CCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhh-ccCCCeeeecCcC
Q psy2071         187 RTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQY-FDNAPLMNVPGRT  238 (302)
Q Consensus       187 p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~-~d~~~~l~i~g~~  238 (302)
                      |++++|+.. ..+.+++....+.+.|||++||+++.+..+ ||++++|+ .|+.
T Consensus       178 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~-~G~i  230 (252)
T CHL00131        178 TDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQ-NGKI  230 (252)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEe-CCEE
Confidence            999999887 778888877655588999999999999887 89999998 6654

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.95  E-value=2e-29  Score=243.14  Aligned_cols=169  Identities=15%  Similarity=0.191  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH----HHHHHHhhhh-------hccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA----MSVAQRVSEE-------MDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~----~~~~~~~~~~-------~~~~  134 (302)
                      +++++++.|.+|++++|+||||||||||+++|+|+++|++|++.+.|........    .....++.+.       ...+
T Consensus       267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t  346 (501)
T PRK10762        267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS  346 (501)
T ss_pred             CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence            4789999999999999999999999999999999999999999998854321100    0000111111       1223


Q ss_pred             cccceeeee-------------------------eecC-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         135 LGQEVGYSI-------------------------RFED-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       135 ~~~~v~~~~-------------------------~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      +.+++.+..                         .+.. ....++.+..|||||+||++||+||+.+|++|||||   ||
T Consensus       347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDE---Pt  423 (501)
T PRK10762        347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDE---PT  423 (501)
T ss_pred             HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcC---CC
Confidence            333332210                         0011 012356677899999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++|+.. ..+.++++...+.|.|||++|||++++.++||++++|+ .|+.
T Consensus       424 ~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~-~G~i  473 (501)
T PRK10762        424 RGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMH-EGRI  473 (501)
T ss_pred             CCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEE-CCEE
Confidence            9999887 78888888766568899999999999999999999998 6653

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.95  E-value=5.2e-29  Score=219.66  Aligned_cols=176  Identities=15%  Similarity=0.151  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEE-----------EeecCchhhhHHHH---------HH
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKA-----------VACTQPRRVAAMSV---------AQ  125 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~-----------i~~~~~~~~~~~~~---------~~  125 (302)
                      ++++++ .+++|++++|+||||||||||+++|+|+++|++|++.           +.|...........         .+
T Consensus        16 ~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~   94 (255)
T cd03236          16 KLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQ   94 (255)
T ss_pred             hhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecc
Confidence            577888 4999999999999999999999999999999999985           55554322110000         01


Q ss_pred             Hhhhhhccccccceeeee--------------eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071         126 RVSEEMDCQLGQEVGYSI--------------RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT  191 (302)
Q Consensus       126 ~~~~~~~~~~~~~v~~~~--------------~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l  191 (302)
                      .+.... .++..++...+              .+......+..+..||+||+||+++|++++.+|+++||||   |++++
T Consensus        95 ~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE---Pts~L  170 (255)
T cd03236          95 YVDLIP-KAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDE---PSSYL  170 (255)
T ss_pred             hhccCc-hHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC---CCCCC
Confidence            111100 01111111100              0111112345667899999999999999999999999999   99999


Q ss_pred             HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcCCccceeecCC
Q psy2071         192 DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPE  248 (302)
Q Consensus       192 D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~  248 (302)
                      |+.. ..+.++++...+.+.+|+++||+++.+..+||++.+|+  |+.-...++-.|.
T Consensus       171 D~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~--~~~~~~~~~~~~~  226 (255)
T cd03236         171 DIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY--GEPGAYGVVTLPK  226 (255)
T ss_pred             CHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC--CCCCcceeeecCc
Confidence            9887 66778877665557899999999999999999999986  4433334555443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0058|consensus

Probab=99.95  E-value=2.9e-29  Score=239.76  Aligned_cols=170  Identities=17%  Similarity=0.254  Sum_probs=138.9

Q ss_pred             hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hhh---hccccc
Q psy2071          63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SEE---MDCQLG  136 (302)
Q Consensus        63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~~---~~~~~~  136 (302)
                      ...+++|++++|++|++++|+||||+||||+..++..+|.|++|.|.++|.+.+.+......+.+   .++   +..++.
T Consensus       480 ~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~  559 (716)
T KOG0058|consen  480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR  559 (716)
T ss_pred             CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHH
Confidence            44578999999999999999999999999999999999999999999999998877766665544   343   467888


Q ss_pred             cceeeeeeecCC--------------------CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071         137 QEVGYSIRFEDC--------------------SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD  192 (302)
Q Consensus       137 ~~v~~~~~~~~~--------------------~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD  192 (302)
                      +|+.|.......                    ...+|.+    ..||||||||+||||||+.+|.+|||||   -|++||
T Consensus       560 eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDE---ATSALD  636 (716)
T KOG0058|consen  560 ENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDE---ATSALD  636 (716)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEec---hhhhcc
Confidence            999998752110                    0112322    2399999999999999999999999999   899999


Q ss_pred             HHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         193 ILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       193 ~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ... .++++.+.+..+ +.|++++.|-+..++ -+|+|++++ .|+.
T Consensus       637 aeSE~lVq~aL~~~~~-~rTVlvIAHRLSTV~-~Ad~Ivvi~-~G~V  680 (716)
T KOG0058|consen  637 AESEYLVQEALDRLMQ-GRTVLVIAHRLSTVR-HADQIVVID-KGRV  680 (716)
T ss_pred             hhhHHHHHHHHHHhhc-CCeEEEEehhhhHhh-hccEEEEEc-CCeE
Confidence            877 678888876544 478899999999885 689999998 6653

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.95  E-value=1e-29  Score=239.97  Aligned_cols=163  Identities=14%  Similarity=0.125  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceee----
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGY----  141 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----  141 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|.+.+.|.... ....     .......++.+++.+    
T Consensus        39 IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~-i~~~-----~~l~~~lTV~EnL~l~~~~  112 (549)
T PRK13545         39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL-IAIS-----SGLNGQLTGIENIELKGLM  112 (549)
T ss_pred             EEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee-EEec-----cccCCCCcHHHHHHhhhhh
Confidence            578999999999999999999999999999999999999999998775311 0000     000001111111111    


Q ss_pred             --------------eeeecC-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc
Q psy2071         142 --------------SIRFED-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR  205 (302)
Q Consensus       142 --------------~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~  205 (302)
                                    .+.... ....++.+..|||||+||++||+||+.+|++|||||   |++++|+.. ..+.+++...
T Consensus       113 ~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDE---PTsgLD~~sr~~LlelL~el  189 (549)
T PRK13545        113 MGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDE---ALSVGDQTFTKKCLDKMNEF  189 (549)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC---CcccCCHHHHHHHHHHHHHH
Confidence                          001001 112345678899999999999999999999999999   999999887 6777888766


Q ss_pred             CCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         206 ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       206 ~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .+.+.|||++|||++.+..+||++++|+ .|+.
T Consensus       190 ~~~G~TIIIVSHdl~~i~~l~DrIivL~-~GkI  221 (549)
T PRK13545        190 KEQGKTIFFISHSLSQVKSFCTKALWLH-YGQV  221 (549)
T ss_pred             HhCCCEEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence            5668899999999999999999999998 6653

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.95  E-value=1.4e-29  Score=244.42  Aligned_cols=169  Identities=14%  Similarity=0.160  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH----HHHhhhh-------hccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV----AQRVSEE-------MDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~----~~~~~~~-------~~~~  134 (302)
                      .++++++.|++|++++|+||||||||||+++|+|+++|++|.+.+.|...........    ..++.+.       ...+
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t  357 (510)
T PRK15439        278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP  357 (510)
T ss_pred             CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence            3789999999999999999999999999999999999999999998864321100000    0011110       1112


Q ss_pred             ccccee--------e-------------ee-eecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071         135 LGQEVG--------Y-------------SI-RFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT  191 (302)
Q Consensus       135 ~~~~v~--------~-------------~~-~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l  191 (302)
                      +.+++.        +             .+ .+... ...++.+..|||||+||++||+||+.+|++|||||   ||+++
T Consensus       358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDE---Pt~gL  434 (510)
T PRK15439        358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDE---PTRGV  434 (510)
T ss_pred             HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECC---CCcCc
Confidence            222211        0             00 01111 12356678899999999999999999999999999   99999


Q ss_pred             HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         192 DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       192 D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |+.. ..+.+++....+.|.+||++|||++++.++||++++|+ .|+.
T Consensus       435 D~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~-~G~i  481 (510)
T PRK15439        435 DVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMH-QGEI  481 (510)
T ss_pred             ChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE-CCEE
Confidence            9888 78888888766568899999999999999999999998 6653

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.8e-30  Score=226.34  Aligned_cols=169  Identities=18%  Similarity=0.203  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc--c---cCCCEEEeecCchh--h---hHHHHHHHhhhh---h
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS--K---SVGAKAVACTQPRR--V---AAMSVAQRVSEE---M  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~--~---~~G~~~i~~~~~~~--~---~~~~~~~~~~~~---~  131 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|++.  |   ++|++.++|.+...  .   .......++.+.   .
T Consensus        26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~  105 (259)
T PRK14274         26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF  105 (259)
T ss_pred             eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence            35789999999999999999999999999999999987  3   58999998865421  0   000000111111   1


Q ss_pred             ccccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         132 DCQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       132 ~~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      ..++.+++.+.....                   ..     ...++....||+||+||++||++|+.+|+++||||   |
T Consensus       106 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDE---P  182 (259)
T PRK14274        106 PQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDE---P  182 (259)
T ss_pred             ccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---C
Confidence            123333332211000                   00     01234567799999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++++|+.. ..+.+++....+ +.|+|++||+.+.+.++||++++|+ .|+.
T Consensus       183 t~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~-~G~i  232 (259)
T PRK14274        183 TSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFY-MGEL  232 (259)
T ss_pred             cccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEE-CCEE
Confidence            99999887 778888887655 6899999999999999999999998 6653

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.95  E-value=5.3e-29  Score=244.96  Aligned_cols=167  Identities=15%  Similarity=0.190  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhh------hhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSE------EMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  138 (302)
                      ..++++++.|++||.++|+|+||||||||+|+++|++.|+.|+|.++|.+........+.+.+..      .+..++.+|
T Consensus       487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eN  566 (709)
T COG2274         487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIREN  566 (709)
T ss_pred             chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHH
Confidence            46899999999999999999999999999999999999999999999998777666555554432      234455566


Q ss_pred             eeeeeeecCC--------------------CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         139 VGYSIRFEDC--------------------SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       139 v~~~~~~~~~--------------------~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      +...-.....                    ...++.+    ..||||||||++|||||+.+|++|||||   +|+++|+.
T Consensus       567 i~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDE---aTSaLD~~  643 (709)
T COG2274         567 IALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDE---ATSALDPE  643 (709)
T ss_pred             HhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeC---cccccCHh
Confidence            5543321110                    0112222    3499999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      . +.+.+-+.+... |.|+|++||....+ +.||+++||+ .|+
T Consensus       644 sE~~I~~~L~~~~~-~~T~I~IaHRl~ti-~~adrIiVl~-~Gk  684 (709)
T COG2274         644 TEAIILQNLLQILQ-GRTVIIIAHRLSTI-RSADRIIVLD-QGK  684 (709)
T ss_pred             HHHHHHHHHHHHhc-CCeEEEEEccchHh-hhccEEEEcc-CCc
Confidence            8 666666665543 58999999999877 5799999999 665

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.1e-29  Score=241.21  Aligned_cols=169  Identities=15%  Similarity=0.133  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH-H---HHhhhh-------hccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV-A---QRVSEE-------MDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~-~---~~~~~~-------~~~~  134 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+.+|++|.+.+.|.+......... .   .++.+.       ...+
T Consensus       263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~  342 (491)
T PRK10982        263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLD  342 (491)
T ss_pred             ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCc
Confidence            5789999999999999999999999999999999999999999998865422111000 0   001000       0111


Q ss_pred             cc-----cceeeee--------------------eecC-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         135 LG-----QEVGYSI--------------------RFED-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       135 ~~-----~~v~~~~--------------------~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      +.     +++.+..                    .+.. ....++.+..|||||+||++||++++.+|++|||||   ||
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDE---Pt  419 (491)
T PRK10982        343 IGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDE---PT  419 (491)
T ss_pred             HHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcC---CC
Confidence            11     1110000                    0000 012356778899999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++|+.. ..+.+++..+.+.+.|||++|||++++..+||++++|+ .|+.
T Consensus       420 ~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~-~g~i  469 (491)
T PRK10982        420 RGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMS-NGLV  469 (491)
T ss_pred             cccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEE-CCEE
Confidence            9999887 77888887766668999999999999999999999998 6654

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.95  E-value=1.2e-29  Score=219.18  Aligned_cols=163  Identities=16%  Similarity=0.165  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----------HHHHHHHhhhhhccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----------AMSVAQRVSEEMDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----------~~~~~~~~~~~~~~~  134 (302)
                      +.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.......           ...+.+... .+..+
T Consensus        16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~-~~~~t   94 (218)
T cd03290          16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPW-LLNAT   94 (218)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCc-ccccc
Confidence            578899999999999999999999999999999999999999999886432110           000111100 11223


Q ss_pred             cccceeeeeeecC-----------C------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071         135 LGQEVGYSIRFED-----------C------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT  191 (302)
Q Consensus       135 ~~~~v~~~~~~~~-----------~------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l  191 (302)
                      +.+++.+......           .            ...+..+..||+||+||++||++++.+|++|||||   |+.++
T Consensus        95 ~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE---Pt~~L  171 (218)
T cd03290          95 VEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDD---PFSAL  171 (218)
T ss_pred             HHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC---Ccccc
Confidence            4444433211100           0            00123457899999999999999999999999999   99999


Q ss_pred             HHHH-HHHHH--HHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         192 DILM-GVLKE--VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       192 D~~~-~~l~~--ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      |+.. ..+.+  +++...+.+.|+|++||+.+.+. +||++++|+
T Consensus       172 D~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~  215 (218)
T cd03290         172 DIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMK  215 (218)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEec
Confidence            9876 55655  66655556889999999999885 699998886

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.95  E-value=1.2e-29  Score=223.25  Aligned_cols=170  Identities=12%  Similarity=0.047  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc--cccCCCEEEeecCchhhhHHHH----HHHhhhhh----ccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY--SKSVGAKAVACTQPRRVAAMSV----AQRVSEEM----DCQ  134 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~--~~~~G~~~i~~~~~~~~~~~~~----~~~~~~~~----~~~  134 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+.  +|++|++.++|.+.........    ...+.+..    ..+
T Consensus        15 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~   94 (248)
T PRK09580         15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVS   94 (248)
T ss_pred             eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchh
Confidence            3678999999999999999999999999999999995  6999999998865422110000    00000000    000


Q ss_pred             -------cccceeee-----eee-------------cCC--CCcccccc-ccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071         135 -------LGQEVGYS-----IRF-------------EDC--SSPKTVLK-YMTDGMLLREGMSDPMLENYQVILLDEAHE  186 (302)
Q Consensus       135 -------~~~~v~~~-----~~~-------------~~~--~~~~~~~~-~lS~G~~qr~~la~al~~~p~lliLDE~~~  186 (302)
                             ...++...     ...             ...  ...++... .||+||+||++||+|++.+|++|||||   
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDE---  171 (248)
T PRK09580         95 NQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE---  171 (248)
T ss_pred             HHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeC---
Confidence                   00000000     000             000  01122232 699999999999999999999999999   


Q ss_pred             CCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhh-ccCCCeeeecCcC
Q psy2071         187 RTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQY-FDNAPLMNVPGRT  238 (302)
Q Consensus       187 p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~-~d~~~~l~i~g~~  238 (302)
                      ||+++|+.. ..+.++++...+.+.|||++|||.+.+..+ ||++++|+ .|+.
T Consensus       172 Pt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~-~g~i  224 (248)
T PRK09580        172 SDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLY-QGRI  224 (248)
T ss_pred             CCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEE-CCeE
Confidence            999999887 778888876655678999999999999887 89999997 6653

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.95  E-value=2.9e-29  Score=212.89  Aligned_cols=173  Identities=18%  Similarity=0.194  Sum_probs=125.6

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh----------HHHHHHHhhhh
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA----------AMSVAQRVSEE  130 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~----------~~~~~~~~~~~  130 (302)
                      ...+++++||++.+++||.+||+|+||||||||+++|+|.++|++|++.+.|.-..-+.          ...........
T Consensus        37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~  116 (249)
T COG1134          37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLI  116 (249)
T ss_pred             cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHH
Confidence            34566799999999999999999999999999999999999999999998875321110          00001111111


Q ss_pred             hccccc---cceeeeeeecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc
Q psy2071         131 MDCQLG---QEVGYSIRFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR  205 (302)
Q Consensus       131 ~~~~~~---~~v~~~~~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~  205 (302)
                      ++.+..   +.+...+.|... ...+.+++.+|.||+-|++++.|...+|++||+||   -.+.-|... +...+.+..+
T Consensus       117 ~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDE---vlavGD~~F~~K~~~rl~e~  193 (249)
T COG1134         117 LGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDE---VLAVGDAAFQEKCLERLNEL  193 (249)
T ss_pred             hCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEeh---hhhcCCHHHHHHHHHHHHHH
Confidence            111100   011111111111 23467889999999999999999999999999999   677888766 5555555555


Q ss_pred             CCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         206 ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       206 ~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      .+.+.|+++||||++.+.++||++++|+ .|.
T Consensus       194 ~~~~~tiv~VSHd~~~I~~~Cd~~i~l~-~G~  224 (249)
T COG1134         194 VEKNKTIVLVSHDLGAIKQYCDRAIWLE-HGQ  224 (249)
T ss_pred             HHcCCEEEEEECCHHHHHHhcCeeEEEe-CCE
Confidence            4446899999999999999999999999 664

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.8e-29  Score=222.97  Aligned_cols=165  Identities=16%  Similarity=0.172  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchh-----hhHHHHHHHhhhh---h
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRR-----VAAMSVAQRVSEE---M  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~-----~~~~~~~~~~~~~---~  131 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|++.     |++|.+.+.|.+...     .........+.+.   .
T Consensus        24 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~  103 (264)
T PRK14243         24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPF  103 (264)
T ss_pred             EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccc
Confidence            35789999999999999999999999999999999976     378999998864321     0000000111111   1


Q ss_pred             ccccccceeeeeeec-----------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071         132 DCQLGQEVGYSIRFE-----------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL  189 (302)
Q Consensus       132 ~~~~~~~v~~~~~~~-----------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~  189 (302)
                      ..++.+++.+.....                 ..     ...+..+..||+||+||++||+||+.+|++|||||   |++
T Consensus       104 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE---Pt~  180 (264)
T PRK14243        104 PKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDE---PCS  180 (264)
T ss_pred             cccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CCc
Confidence            124444443321100                 00     01234556799999999999999999999999999   999


Q ss_pred             chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      ++|+.. ..+.+++....+ +.|||++||+.+.+.++||++++|+
T Consensus       181 ~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~  224 (264)
T PRK14243        181 ALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFFN  224 (264)
T ss_pred             cCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEe
Confidence            999887 778888887655 4799999999999999999999997

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.95  E-value=1.2e-29  Score=246.03  Aligned_cols=169  Identities=15%  Similarity=0.181  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhhhHH---HH----HHHhhhhh-
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRVAAM---SV----AQRVSEEM-  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~~~~---~~----~~~~~~~~-  131 (302)
                      .+++++++.|++||+++|+||||||||||+++|+|+++|     ++|++.+.|.........   ..    ...+.+.. 
T Consensus        23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~  102 (529)
T PRK15134         23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM  102 (529)
T ss_pred             eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence            357899999999999999999999999999999999986     789999988654221100   00    01111110 


Q ss_pred             -----ccccccceee-------------------eeeecCCC----CccccccccCHHHHHHHhccccCCCCCcEEEEcC
Q psy2071         132 -----DCQLGQEVGY-------------------SIRFEDCS----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE  183 (302)
Q Consensus       132 -----~~~~~~~v~~-------------------~~~~~~~~----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE  183 (302)
                           ..++.+++.+                   .+......    ..++.+..|||||+||++||+||+.+|++|||||
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDE  182 (529)
T PRK15134        103 VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADE  182 (529)
T ss_pred             hhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence                 1112121110                   00000111    1245678899999999999999999999999999


Q ss_pred             CCCCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         184 AHERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       184 ~~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                         ||+++|+.. ..+.+++++... .+.|||++|||++.+..+||++++|+ .|+
T Consensus       183 ---Pt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~-~G~  234 (529)
T PRK15134        183 ---PTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQ-NGR  234 (529)
T ss_pred             ---CCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEE-CCE
Confidence               999999888 778888877543 47899999999999999999999998 565

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.5e-29  Score=223.09  Aligned_cols=168  Identities=15%  Similarity=0.187  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchhhh-----HHHHHHHhhhh---hc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRRVA-----AMSVAQRVSEE---MD  132 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~---~~  132 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+..     |++|++.+.|.+.....     .......+.+.   +.
T Consensus        20 ~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~   99 (251)
T PRK14244         20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFP   99 (251)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccccc
Confidence            5788999999999999999999999999999999976     46899999886432110     00000111111   11


Q ss_pred             cccccceeeeeee--------------------cCCC-----CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         133 CQLGQEVGYSIRF--------------------EDCS-----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       133 ~~~~~~v~~~~~~--------------------~~~~-----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      .++.+++.+....                    ....     ..+.....||+||+||++||++|+.+|++|||||   |
T Consensus       100 ~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE---P  176 (251)
T PRK14244        100 KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDE---P  176 (251)
T ss_pred             CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---C
Confidence            1333333221000                    0000     1123456799999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++++|+.. ..+.+++....+ +.||+++||+.+++.++||++++|+ .|+.
T Consensus       177 t~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~-~G~i  226 (251)
T PRK14244        177 CSALDPVATNVIENLIQELKK-NFTIIVVTHSMKQAKKVSDRVAFFQ-SGRI  226 (251)
T ss_pred             CccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhcCEEEEEE-CCEE
Confidence            99999887 778888876654 7899999999999999999999998 6654

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.2e-29  Score=224.70  Aligned_cols=165  Identities=14%  Similarity=0.136  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchh--hhH---HHHHHHhhhh---h
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRR--VAA---MSVAQRVSEE---M  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~--~~~---~~~~~~~~~~---~  131 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|++.|     ++|.+.+.|.+...  ...   .....++.+.   .
T Consensus        34 ~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~  113 (274)
T PRK14265         34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPF  113 (274)
T ss_pred             EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccc
Confidence            357899999999999999999999999999999999863     58999998865321  000   0000111111   1


Q ss_pred             ccccccceeeeee-----------------ecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071         132 DCQLGQEVGYSIR-----------------FEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL  189 (302)
Q Consensus       132 ~~~~~~~v~~~~~-----------------~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~  189 (302)
                      ..++.+++.+...                 ....     ...++.+..||+||+||++||+||+.+|++|||||   |++
T Consensus       114 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDE---Pt~  190 (274)
T PRK14265        114 PKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDE---PCS  190 (274)
T ss_pred             cccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeC---Ccc
Confidence            1133333322110                 0000     01234567799999999999999999999999999   999


Q ss_pred             chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      ++|+.. ..+.+++....+ +.|||++|||.+.+..+||++++|+
T Consensus       191 ~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~  234 (274)
T PRK14265        191 ALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFFN  234 (274)
T ss_pred             cCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            999887 778888887655 5899999999999999999999996

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2e-29  Score=222.23  Aligned_cols=168  Identities=15%  Similarity=0.160  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc---ccc--cCCCEEEeecCchhh-----hHHHHHHHhhhh---hc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE---YSK--SVGAKAVACTQPRRV-----AAMSVAQRVSEE---MD  132 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~---~~~--~~G~~~i~~~~~~~~-----~~~~~~~~~~~~---~~  132 (302)
                      +.+++++.|++|++++|+|+||||||||+++|+|+   ++|  ++|++.+.|.+....     .......++.+.   ..
T Consensus        18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~   97 (250)
T PRK14245         18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP   97 (250)
T ss_pred             EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc
Confidence            57889999999999999999999999999999997   354  489999988654221     000000111110   11


Q ss_pred             cccccceeeee-------------------eecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         133 CQLGQEVGYSI-------------------RFEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       133 ~~~~~~v~~~~-------------------~~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      .++.+++.+..                   .....     ...+.....||+||+||++||++|+.+|++|||||   |+
T Consensus        98 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---Pt  174 (250)
T PRK14245         98 KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDE---PA  174 (250)
T ss_pred             ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CC
Confidence            23333332211                   00000     01234567899999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++|+.. ..+.+++.+..+ +.|||++||+.+.+.++||++++|+ .|+.
T Consensus       175 ~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~v~~l~-~G~~  223 (250)
T PRK14245        175 SALDPISTAKVEELIHELKK-DYTIVIVTHNMQQAARVSDKTAFFY-MGEM  223 (250)
T ss_pred             ccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEE-CCEE
Confidence            9999887 778888887654 6899999999999999999999998 6654

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.95  E-value=1.9e-29  Score=244.35  Aligned_cols=168  Identities=15%  Similarity=0.143  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEe-ecCc---hhh----------hHHHHHHHhhhhh
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA-CTQP---RRV----------AAMSVAQRVSEEM  131 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~-~~~~---~~~----------~~~~~~~~~~~~~  131 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+. |...   ...          ....+.+......
T Consensus       299 il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~  378 (520)
T TIGR03269       299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYP  378 (520)
T ss_pred             EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCC
Confidence            5789999999999999999999999999999999999999999995 4211   100          0000111111111


Q ss_pred             ccccccceeeee-----------------eecCCC------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         132 DCQLGQEVGYSI-----------------RFEDCS------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       132 ~~~~~~~v~~~~-----------------~~~~~~------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      ..++.+++.+..                 ......      ..++.+..|||||+||++||+||+.+|++|||||   ||
T Consensus       379 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDE---Pt  455 (520)
T TIGR03269       379 HRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDE---PT  455 (520)
T ss_pred             CCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---Cc
Confidence            233333332110                 000111      1346678899999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         189 LATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +++|+.. ..+.+++.... +.+.|||++|||++++.++||++++|+ .|+
T Consensus       456 ~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~-~G~  505 (520)
T TIGR03269       456 GTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMR-DGK  505 (520)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence            9999888 77888887664 348899999999999999999999998 665

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.95  E-value=1.1e-29  Score=216.63  Aligned_cols=159  Identities=15%  Similarity=0.105  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hh----hhhcccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VS----EEMDCQLGQ  137 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~----~~~~~~~~~  137 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+..+... ...+.   +.    .....++.+
T Consensus        15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~-~~~~~i~~~~q~~~~~~~~tv~~   93 (200)
T PRK13540         15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLC-TYQKQLCFVGHRSGINPYLTLRE   93 (200)
T ss_pred             eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHH-HHHhheEEeccccccCcCCCHHH
Confidence            35789999999999999999999999999999999999999999999876432111 11111   11    112334455


Q ss_pred             ceeeeeee--------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHH
Q psy2071         138 EVGYSIRF--------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVI  202 (302)
Q Consensus       138 ~v~~~~~~--------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll  202 (302)
                      ++.+....              ......+..+..||+||+||++||+|++.+|++|||||   |++++|+.. ..+.+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDE---P~~~LD~~~~~~l~~~l  170 (200)
T PRK13540         94 NCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE---PLVALDELSLLTIITKI  170 (200)
T ss_pred             HHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC---CCcccCHHHHHHHHHHH
Confidence            44332100              00011244567799999999999999999999999999   999999887 7888888


Q ss_pred             HHcCCCcEEEEEEecCHHHHHhhccC
Q psy2071         203 KQRADLKLVIMSATLDAGKFQQYFDN  228 (302)
Q Consensus       203 ~~~~~~~~~ii~~thd~~~~~~~~d~  228 (302)
                      ....+.+.|++++||+...+.. ||.
T Consensus       171 ~~~~~~~~tiii~sh~~~~~~~-~d~  195 (200)
T PRK13540        171 QEHRAKGGAVLLTSHQDLPLNK-ADY  195 (200)
T ss_pred             HHHHHcCCEEEEEeCCchhccc-cch
Confidence            8765558899999999887754 664

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.4e-29  Score=221.14  Aligned_cols=169  Identities=16%  Similarity=0.196  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc--c---cCCCEEEeecCchhh--hHHHH---HHHhhh---hh
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS--K---SVGAKAVACTQPRRV--AAMSV---AQRVSE---EM  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~--~---~~G~~~i~~~~~~~~--~~~~~---~~~~~~---~~  131 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+..  |   ++|++.+.|.+....  .....   ...+.+   .+
T Consensus        20 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   99 (253)
T PRK14261         20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF   99 (253)
T ss_pred             eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccC
Confidence            46789999999999999999999999999999999875  3   479999988654221  00000   011111   11


Q ss_pred             ccccccceeeeeeecC-------------------C-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         132 DCQLGQEVGYSIRFED-------------------C-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       132 ~~~~~~~v~~~~~~~~-------------------~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      ..++.+++.+......                   .     ...++....||+||+||++||++++.+|+++||||   |
T Consensus       100 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---P  176 (253)
T PRK14261        100 PKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDE---P  176 (253)
T ss_pred             cccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---C
Confidence            1244444433211100                   0     01234556799999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++++|+.. ..+.+++....+ +.|+|++||+++.+.++||++++|+ .|+.
T Consensus       177 ~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~-~G~i  226 (253)
T PRK14261        177 CSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMY-LGKL  226 (253)
T ss_pred             cccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEEE-CCEE
Confidence            99999887 778888887655 5799999999999999999999998 6664

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.95  E-value=7.2e-29  Score=203.53  Aligned_cols=140  Identities=21%  Similarity=0.262  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +++++++.+++|++++|+|+||||||||+++|+|+++|+.|++.+.+.........            .....++|..+ 
T Consensus        14 ~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~------------~~~~~i~~~~q-   80 (157)
T cd00267          14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLE------------ELRRRIGYVPQ-   80 (157)
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHH------------HHHhceEEEee-
Confidence            57788999999999999999999999999999999999999999988643221100            01123444433 


Q ss_pred             cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071         146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ  224 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~  224 (302)
                                  ||+||+||+++|++++.+|+++||||   |+.++|... ..+.+++....+.+.+++++||+.+++..
T Consensus        81 ------------lS~G~~~r~~l~~~l~~~~~i~ilDE---p~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~  145 (157)
T cd00267          81 ------------LSGGQRQRVALARALLLNPDLLLLDE---PTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL  145 (157)
T ss_pred             ------------CCHHHHHHHHHHHHHhcCCCEEEEeC---CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence                        99999999999999999999999999   999999877 77878887655446899999999999999


Q ss_pred             hccCCCeee
Q psy2071         225 YFDNAPLMN  233 (302)
Q Consensus       225 ~~d~~~~l~  233 (302)
                      +||+++++.
T Consensus       146 ~~d~i~~l~  154 (157)
T cd00267         146 AADRVIVLK  154 (157)
T ss_pred             hCCEEEEEe
Confidence            999998886

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.95  E-value=1.4e-28  Score=204.17  Aligned_cols=171  Identities=14%  Similarity=0.197  Sum_probs=132.2

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhhhh------ccc
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSEEM------DCQ  134 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~~~------~~~  134 (302)
                      ..++.+++..|.+|+++.|+|.||||||||++.++|.+.|++|.|.|+|.+..+.+....+.+   |++.+      ..+
T Consensus        19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT   98 (263)
T COG1101          19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT   98 (263)
T ss_pred             HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence            346889999999999999999999999999999999999999999999988766554433332   32221      234


Q ss_pred             cccceeeeee----------ecC-----------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         135 LGQEVGYSIR----------FED-----------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       135 ~~~~v~~~~~----------~~~-----------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      +.+|+.....          ...                 .....+++..|||||||-++++.|-++.|++|+|||   .
T Consensus        99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE---H  175 (263)
T COG1101          99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE---H  175 (263)
T ss_pred             HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc---h
Confidence            4444432210          000                 011245677799999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHH-cCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQ-RADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~-~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |+++||-. ..+.++-.+ ..+.+.|.+++||+++.+..|.+|.++|+ .|++
T Consensus       176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh-~G~I  227 (263)
T COG1101         176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLH-SGKI  227 (263)
T ss_pred             hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEe-CCeE
Confidence            99999877 555555443 34568999999999999999999999999 7753

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.95  E-value=1.2e-28  Score=196.07  Aligned_cols=173  Identities=16%  Similarity=0.142  Sum_probs=133.9

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch------hhhHH-------HHHHHh
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR------RVAAM-------SVAQRV  127 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~------~~~~~-------~~~~~~  127 (302)
                      +...+.+-||++..++|+.++++||+|+|||||++.+..+.-|.+|+..|.+....      .....       .+.++.
T Consensus        12 yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy   91 (242)
T COG4161          12 YGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQY   91 (242)
T ss_pred             cccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhh
Confidence            34556788899999999999999999999999999999999999999998876421      11111       122222


Q ss_pred             hhhhccccccceeee-ee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         128 SEEMDCQLGQEVGYS-IR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       128 ~~~~~~~~~~~v~~~-~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      ...+..++.+|+-.. .+                   +......++..-.|||||+||++|||||+.+|++|++||   |
T Consensus        92 ~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfde---p  168 (242)
T COG4161          92 NLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDE---P  168 (242)
T ss_pred             ccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecC---c
Confidence            223334444443221 11                   111123445556699999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      |.++|+.. ..+.++++.+.+.|+|-+++||..+.+...+.++..|. .|+
T Consensus       169 taaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme-~g~  218 (242)
T COG4161         169 TAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYME-NGH  218 (242)
T ss_pred             ccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeee-cCe
Confidence            99999887 88899999999999999999999999999999999998 554

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.95  E-value=2.7e-29  Score=243.63  Aligned_cols=169  Identities=17%  Similarity=0.131  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------HHHHHHhhh------hhc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------MSVAQRVSE------EMD  132 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~~~~~~~~~------~~~  132 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++ ++|++.+.|.+......      .....++.+      ...
T Consensus       300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~  378 (529)
T PRK15134        300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPR  378 (529)
T ss_pred             eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCc
Confidence            36799999999999999999999999999999999985 89999998864321110      000011111      112


Q ss_pred             cccccceeeeee--------------------ecCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071         133 CQLGQEVGYSIR--------------------FEDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA  190 (302)
Q Consensus       133 ~~~~~~v~~~~~--------------------~~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~  190 (302)
                      .++.+++.+...                    .....  ..++.+..|||||+||++||+||+.+|++|||||   ||++
T Consensus       379 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE---Pt~~  455 (529)
T PRK15134        379 LNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDE---PTSS  455 (529)
T ss_pred             ccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeC---Cccc
Confidence            344444432210                    00111  1245667899999999999999999999999999   9999


Q ss_pred             hHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         191 TDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       191 lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +|+.. ..+.+++.+..+ .+.|||++|||++++..+||++++|+ .|+.
T Consensus       456 LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~-~G~i  504 (529)
T PRK15134        456 LDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLR-QGEV  504 (529)
T ss_pred             cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEE-CCEE
Confidence            99887 778888876654 47899999999999999999999998 6653

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.95  E-value=3e-29  Score=242.97  Aligned_cols=168  Identities=10%  Similarity=0.057  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc--cccCCCEEEee-----------------------cCc-----
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY--SKSVGAKAVAC-----------------------TQP-----  115 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~--~~~~G~~~i~~-----------------------~~~-----  115 (302)
                      +++++++.|++|++++|+||||||||||+++|+|++  +|++|++.+.+                       ...     
T Consensus        15 ~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~   94 (520)
T TIGR03269        15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEV   94 (520)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccch
Confidence            578999999999999999999999999999999997  79999998862                       100     


Q ss_pred             --hh--hhH-HHHH---HHhhh-----hhccccccceeeeeeec-------------------CCCCccccccccCHHHH
Q psy2071         116 --RR--VAA-MSVA---QRVSE-----EMDCQLGQEVGYSIRFE-------------------DCSSPKTVLKYMTDGML  163 (302)
Q Consensus       116 --~~--~~~-~~~~---~~~~~-----~~~~~~~~~v~~~~~~~-------------------~~~~~~~~~~~lS~G~~  163 (302)
                        ..  ... ....   ..+.+     ....++.+++.+.....                   .....++.+..|||||+
T Consensus        95 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~  174 (520)
T TIGR03269        95 DFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEK  174 (520)
T ss_pred             hhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHH
Confidence              00  000 0000   11111     11224444443321100                   00112445678999999


Q ss_pred             HHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         164 LREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       164 qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ||++||+||+.+|++|||||   ||+++|+.. ..+.+++.++ ++.|.|||++|||.+.+.++||++++|+ .|+
T Consensus       175 qrv~iA~al~~~p~lllLDE---Pt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~-~G~  246 (520)
T TIGR03269       175 QRVVLARQLAKEPFLFLADE---PTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLE-NGE  246 (520)
T ss_pred             HHHHHHHHHhcCCCEEEeeC---CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEe-CCE
Confidence            99999999999999999999   999999888 7787888765 3458899999999999999999999998 554

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.95  E-value=5.3e-29  Score=207.20  Aligned_cols=153  Identities=20%  Similarity=0.201  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +++++++.+++|++++|+||||||||||++++.    +++|.+.+.+....... ..+ .++.+   ....+.++.    
T Consensus        10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~-~~~-~~~~q---~~~l~~~~L----   76 (176)
T cd03238          10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSR-NKL-IFIDQ---LQFLIDVGL----   76 (176)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccccccc-ccE-EEEhH---HHHHHHcCC----
Confidence            468899999999999999999999999999875    36898888755221100 000 00000   000111111    


Q ss_pred             cCCCCccccccccCHHHHHHHhccccCCCC--CcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHH
Q psy2071         146 EDCSSPKTVLKYMTDGMLLREGMSDPMLEN--YQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKF  222 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~--p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~  222 (302)
                      .. ...+.....||+||+||+++|++++.+  |+++||||   |++++|+.. ..+.++++...+.+.+||++||+.+++
T Consensus        77 ~~-~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDE---Pt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~  152 (176)
T cd03238          77 GY-LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDE---PSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL  152 (176)
T ss_pred             Cc-cccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeC---CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence            00 123456788999999999999999999  99999999   999999887 778888876655689999999999987


Q ss_pred             HhhccCCCeeeecCc
Q psy2071         223 QQYFDNAPLMNVPGR  237 (302)
Q Consensus       223 ~~~~d~~~~l~i~g~  237 (302)
                       ++||++++|. .|.
T Consensus       153 -~~~d~i~~l~-~g~  165 (176)
T cd03238         153 -SSADWIIDFG-PGS  165 (176)
T ss_pred             -HhCCEEEEEC-CCC
Confidence             5799999997 444

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.5e-29  Score=224.22  Aligned_cols=169  Identities=17%  Similarity=0.167  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhh--hH---HHHHHHhhhh---h
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRV--AA---MSVAQRVSEE---M  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~--~~---~~~~~~~~~~---~  131 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|     ++|++.+.|.+....  ..   ......+.+.   +
T Consensus        39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~  118 (272)
T PRK14236         39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF  118 (272)
T ss_pred             eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence            357899999999999999999999999999999999873     799999988653210  00   0000011110   1


Q ss_pred             ccccccceeeeeee-------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         132 DCQLGQEVGYSIRF-------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       132 ~~~~~~~v~~~~~~-------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      ..++.+++.+....                   ...     ...+.....||+||+||++||+||+.+|++|||||   |
T Consensus       119 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE---P  195 (272)
T PRK14236        119 PKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDE---P  195 (272)
T ss_pred             cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeC---C
Confidence            11333333221100                   000     01234567799999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++++|+.. ..+.+++.+..+ +.|++++||+.+++.++||++++|+ .|+.
T Consensus       196 t~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~-~G~i  245 (272)
T PRK14236        196 TSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFMY-MGKL  245 (272)
T ss_pred             cccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEE-CCEE
Confidence            99999887 778888887655 6799999999999999999999998 6664

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.4e-29  Score=224.68  Aligned_cols=174  Identities=20%  Similarity=0.132  Sum_probs=126.7

Q ss_pred             CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhhh----HHHHHHHhhhh
Q psy2071          60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRVA----AMSVAQRVSEE  130 (302)
Q Consensus        60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~~----~~~~~~~~~~~  130 (302)
                      .++...+.+++++.|++|++++|+|+||||||||+++|+|+++|     ++|++.+.|.......    ......++.+.
T Consensus        30 ~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~  109 (276)
T PRK14271         30 GFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQR  109 (276)
T ss_pred             EECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccC
Confidence            34333467899999999999999999999999999999999985     6899999885432110    00001111111


Q ss_pred             ---hccccccceeeeeee-------------------cCCC-----CccccccccCHHHHHHHhccccCCCCCcEEEEcC
Q psy2071         131 ---MDCQLGQEVGYSIRF-------------------EDCS-----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE  183 (302)
Q Consensus       131 ---~~~~~~~~v~~~~~~-------------------~~~~-----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE  183 (302)
                         +..++.+++.+....                   ....     ..++.+..||+||+||++||++|+.+|++|||||
T Consensus       110 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDE  189 (276)
T PRK14271        110 PNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDE  189 (276)
T ss_pred             CccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence               112344443321100                   0000     1134467799999999999999999999999999


Q ss_pred             CCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         184 AHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       184 ~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                         |++++|+.. ..+.+++....+ +.|||++||+.+++.++||++++|+ .|+.
T Consensus       190 ---Pt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~-~G~i  240 (276)
T PRK14271        190 ---PTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFF-DGRL  240 (276)
T ss_pred             ---CcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence               999999887 778888877655 4799999999999999999999998 6654

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.9e-29  Score=222.64  Aligned_cols=169  Identities=18%  Similarity=0.177  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc--c---cCCCEEEeecCchhh-----hHHHHHHHhhhh---h
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS--K---SVGAKAVACTQPRRV-----AAMSVAQRVSEE---M  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~--~---~~G~~~i~~~~~~~~-----~~~~~~~~~~~~---~  131 (302)
                      .+++++++.|.+|++++|+|+||||||||+++|+|+.+  |   ++|++.++|......     ........+.+.   +
T Consensus        19 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   98 (252)
T PRK14255         19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF   98 (252)
T ss_pred             eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccC
Confidence            35789999999999999999999999999999999865  4   489999988643210     000000011110   1


Q ss_pred             ccccccceeeeeee-------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         132 DCQLGQEVGYSIRF-------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       132 ~~~~~~~v~~~~~~-------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                      ..++.+++.+....                   ...     ...+..+..||+||+||++||++|+.+|+++||||   |
T Consensus        99 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE---P  175 (252)
T PRK14255         99 PFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDE---P  175 (252)
T ss_pred             CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---C
Confidence            12333332221100                   000     11234567799999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++++|+.. ..+.+++....+ +.|+|++||+++.+.++||++++|+ .|+.
T Consensus       176 t~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~-~G~i  225 (252)
T PRK14255        176 TSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFFL-TGNL  225 (252)
T ss_pred             CccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence            99999887 778888876654 4799999999999999999999998 6654

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.95  E-value=6.7e-29  Score=201.20  Aligned_cols=181  Identities=16%  Similarity=0.235  Sum_probs=129.6

Q ss_pred             hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhhhh------cc
Q psy2071          63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSEEM------DC  133 (302)
Q Consensus        63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~~~------~~  133 (302)
                      .+.+.+.++|.+++|+.++++|.||||||||.++++|.++|++|++.+++.....-.+.+.++.   +++.+      ..
T Consensus        25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl  104 (267)
T COG4167          25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRL  104 (267)
T ss_pred             hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhh
Confidence            5667889999999999999999999999999999999999999999999875432222222211   11111      11


Q ss_pred             ccccceeeeeeecCCC---------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071         134 QLGQEVGYSIRFEDCS---------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD  192 (302)
Q Consensus       134 ~~~~~v~~~~~~~~~~---------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD  192 (302)
                      .+++-+..+++.....                     ..+-.+..||.||+|||++||||+.+|++||.||   ...++|
T Consensus       105 ~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDe---Al~~LD  181 (267)
T COG4167         105 RIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADE---ALASLD  181 (267)
T ss_pred             hhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehh---hhhhcc
Confidence            2222222222221111                     1122345599999999999999999999999999   789999


Q ss_pred             HHH-HHHHHH-HHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecC
Q psy2071         193 ILM-GVLKEV-IKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTP  247 (302)
Q Consensus       193 ~~~-~~l~~l-l~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~  247 (302)
                      ..+ ..+.++ +....+.|+..|.++.++..+..++|.|+||+ +|.    +.+.+++..|
T Consensus       182 ~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~-EG~vvE~G~t~~v~a~P  241 (267)
T COG4167         182 MSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMH-EGEVVERGSTADVLASP  241 (267)
T ss_pred             HHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEe-cCceeecCChhhhhcCC
Confidence            776 444444 44455679999999999999999999999999 664    3444444433

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.95  E-value=1.6e-28  Score=217.35  Aligned_cols=167  Identities=11%  Similarity=0.129  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~v  139 (302)
                      +.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|..............   +.+   .+..++.+++
T Consensus        36 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl  115 (257)
T cd03288          36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNL  115 (257)
T ss_pred             ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhc
Confidence            5789999999999999999999999999999999999999999998865432111111111   111   1111222222


Q ss_pred             eeeee--------------ec---------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         140 GYSIR--------------FE---------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       140 ~~~~~--------------~~---------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .....              +.         ...........||+||+||+++|+||+.+|++|||||   |+.++|+.. 
T Consensus       116 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE---Pt~gLD~~~~  192 (257)
T cd03288         116 DPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDE---ATASIDMATE  192 (257)
T ss_pred             CcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---CccCCCHHHH
Confidence            21100              00         0000112346799999999999999999999999999   999999887 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ..+.+++....+ +.|++++||+++.+.. ||++++|+ .|+.
T Consensus       193 ~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~dri~~l~-~G~i  232 (257)
T cd03288         193 NILQKVVMTAFA-DRTVVTIAHRVSTILD-ADLVLVLS-RGIL  232 (257)
T ss_pred             HHHHHHHHHhcC-CCEEEEEecChHHHHh-CCEEEEEE-CCEE
Confidence            778888876544 7899999999999975 99999998 6664

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.95  E-value=6.6e-29  Score=226.57  Aligned_cols=153  Identities=18%  Similarity=0.209  Sum_probs=114.4

Q ss_pred             EEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-----HHHHHHhhhhhccccccceeeeeeecC---------
Q psy2071          82 LVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-----MSVAQRVSEEMDCQLGQEVGYSIRFED---------  147 (302)
Q Consensus        82 liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~---------  147 (302)
                      |+||||||||||+++|+|+++|++|++.++|........     ..+.+........++.+++.+..+...         
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~   80 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR   80 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence            689999999999999999999999999998865422110     011111112223455566554322110         


Q ss_pred             ----------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcC-CCcEEEEEE
Q psy2071         148 ----------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRA-DLKLVIMSA  215 (302)
Q Consensus       148 ----------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~  215 (302)
                                ....++.+..|||||+||++|||||+.+|++|||||   |++++|+.. ..+.+++.+.. +.+.|+|++
T Consensus        81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDE---P~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv  157 (325)
T TIGR01187        81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDE---PLSALDKKLRDQMQLELKTIQEQLGITFVFV  157 (325)
T ss_pred             HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC---CCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence                      011345567799999999999999999999999999   999999887 77777777654 348899999


Q ss_pred             ecCHHHHHhhccCCCeeeecCcC
Q psy2071         216 TLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       216 thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |||++++..+||++++|+ .|+.
T Consensus       158 THd~~e~~~~~d~i~vl~-~G~i  179 (325)
T TIGR01187       158 THDQEEAMTMSDRIAIMR-KGKI  179 (325)
T ss_pred             eCCHHHHHHhCCEEEEEE-CCEE
Confidence            999999999999999998 5553

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.9e-29  Score=221.16  Aligned_cols=173  Identities=14%  Similarity=0.177  Sum_probs=125.4

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee------cCchhhhHHHH-------HHHh
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC------TQPRRVAAMSV-------AQRV  127 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~------~~~~~~~~~~~-------~~~~  127 (302)
                      ++...+++++++.|.+|++++|+|+||||||||+++|+|++.|++|++.+.|      .+.........       .+..
T Consensus        20 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~   99 (257)
T PRK14246         20 INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQP   99 (257)
T ss_pred             cCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCC
Confidence            3334468999999999999999999999999999999999999998776655      22211110000       1111


Q ss_pred             hhhhccccccceeeeee-------------------ecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcC
Q psy2071         128 SEEMDCQLGQEVGYSIR-------------------FEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE  183 (302)
Q Consensus       128 ~~~~~~~~~~~v~~~~~-------------------~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE  183 (302)
                      ......++.+++.+...                   ....     ...+.....||+||+||++||+||+.+|+++||||
T Consensus       100 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDE  179 (257)
T PRK14246        100 NPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDE  179 (257)
T ss_pred             ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence            11112233333332110                   0000     01234567799999999999999999999999999


Q ss_pred             CCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         184 AHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       184 ~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                         |+.++|... ..+.+++.+..+ +.||+++||+.+.+..+||++++|+ .|+.
T Consensus       180 ---Pt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~-~g~i  230 (257)
T PRK14246        180 ---PTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADYVAFLY-NGEL  230 (257)
T ss_pred             ---CCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence               999999887 788888887654 5899999999999999999999998 6653

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=5.2e-29  Score=220.82  Aligned_cols=164  Identities=15%  Similarity=0.128  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhh--h---HHHHHHHhhh---hhc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRV--A---AMSVAQRVSE---EMD  132 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~--~---~~~~~~~~~~---~~~  132 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|     ++|++.+.|.+....  .   .......+.+   .+.
T Consensus        23 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  102 (261)
T PRK14263         23 AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFS  102 (261)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcccc
Confidence            57889999999999999999999999999999999986     789999988754210  0   0000111111   112


Q ss_pred             cccccceeeeeee-----------------cCCC-----CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071         133 CQLGQEVGYSIRF-----------------EDCS-----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA  190 (302)
Q Consensus       133 ~~~~~~v~~~~~~-----------------~~~~-----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~  190 (302)
                      .++.+++.+....                 ....     ..+.....||+||+||++||+||+.+|++|||||   |+++
T Consensus       103 ~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Ptsg  179 (261)
T PRK14263        103 MSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDE---PCSA  179 (261)
T ss_pred             ccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CCcc
Confidence            3444444322100                 0000     1123456799999999999999999999999999   9999


Q ss_pred             hHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         191 TDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       191 lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      +|+.. ..+.+++.+..+ +.|++++||+++++.++||++++|+
T Consensus       180 LD~~~~~~l~~~l~~~~~-~~tii~isH~~~~i~~~~d~v~~l~  222 (261)
T PRK14263        180 LDPIATRRVEELMVELKK-DYTIALVTHNMQQAIRVADTTAFFS  222 (261)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEe
Confidence            99887 788888887654 6899999999999999999999995

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.4e-29  Score=223.88  Aligned_cols=169  Identities=15%  Similarity=0.208  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchhh--hHHHHH---HHhhhh---h
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRRV--AAMSVA---QRVSEE---M  131 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~~--~~~~~~---~~~~~~---~  131 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++     |++|.+.+.|......  ......   ..+.+.   +
T Consensus        53 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~  132 (285)
T PRK14254         53 QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPF  132 (285)
T ss_pred             eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence            46899999999999999999999999999999999986     6899999988653210  000000   011111   1


Q ss_pred             ccccccceeeeee-----------------ecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071         132 DCQLGQEVGYSIR-----------------FEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL  189 (302)
Q Consensus       132 ~~~~~~~v~~~~~-----------------~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~  189 (302)
                      ..++.+++.+...                 ....     ...+..+..||+||+||++||+||+.+|++|||||   |++
T Consensus       133 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDE---Pts  209 (285)
T PRK14254        133 PKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDE---PAS  209 (285)
T ss_pred             cCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CCC
Confidence            1133333322110                 0000     01245567899999999999999999999999999   999


Q ss_pred             chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCC-eeeecCcC
Q psy2071         190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAP-LMNVPGRT  238 (302)
Q Consensus       190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~-~l~i~g~~  238 (302)
                      ++|+.. ..+.++++...+ +.|||++||+.+++..+||+++ +|+ .|+.
T Consensus       210 ~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dri~v~l~-~G~i  258 (285)
T PRK14254        210 ALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDKTAVFLT-GGEL  258 (285)
T ss_pred             CCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEEEEEee-CCEE
Confidence            999887 778888887655 3689999999999999999975 456 5653

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=6.5e-29  Score=220.05  Aligned_cols=164  Identities=16%  Similarity=0.148  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchh--hh---HHHHHHHhhhh---hc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRR--VA---AMSVAQRVSEE---MD  132 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~--~~---~~~~~~~~~~~---~~  132 (302)
                      +.+++++.|++|++++|+|+||||||||+++|+|+++|     ++|++.++|.....  ..   .......+.+.   ..
T Consensus        22 il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~  101 (259)
T PRK14260         22 AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP  101 (259)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC
Confidence            57899999999999999999999999999999999885     47999998864321  00   00000111111   11


Q ss_pred             cccccceeeeeee-------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         133 CQLGQEVGYSIRF-------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       133 ~~~~~~v~~~~~~-------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      .++.+++.+....                   ...     ...++....||+||+||++||+||+.+|++|||||   |+
T Consensus       102 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---Pt  178 (259)
T PRK14260        102 MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDE---PC  178 (259)
T ss_pred             ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CC
Confidence            2333333221100                   000     11234567799999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      +++|+.. ..+.+++....+ +.|++++||+++++.++||++++|+
T Consensus       179 ~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l~  223 (259)
T PRK14260        179 SALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFFS  223 (259)
T ss_pred             ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEEe
Confidence            9999887 778888877655 5899999999999999999999997

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=9.1e-29  Score=212.42  Aligned_cols=164  Identities=15%  Similarity=0.173  Sum_probs=130.6

Q ss_pred             HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC-------------chhhhHHHHHHHhhhhhcccc
Q psy2071          69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ-------------PRRVAAMSVAQRVSEEMDCQL  135 (302)
Q Consensus        69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~-------------~~~~~~~~~~~~~~~~~~~~~  135 (302)
                      ++++.++...+++|.|++|||||||+|+|+|+..|+.|.|.++|.-             .++++++++..+.  ++..++
T Consensus        16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARL--FpH~tV   93 (352)
T COG4148          16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL--FPHYTV   93 (352)
T ss_pred             EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeecccc--ccceEE
Confidence            3566777778999999999999999999999999999999988742             1333433333333  456688


Q ss_pred             ccceeeeeeecCCC-------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071         136 GQEVGYSIRFEDCS-------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV  201 (302)
Q Consensus       136 ~~~v~~~~~~~~~~-------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l  201 (302)
                      ..|+.|...+....             ..++....||||+||||+|+|||+..|++|+|||   |.+++|... ..+.-.
T Consensus        94 rgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDE---PLaSLD~~RK~Eilpy  170 (352)
T COG4148          94 RGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDE---PLASLDLPRKREILPY  170 (352)
T ss_pred             ecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecC---chhhcccchhhHHHHH
Confidence            88888877554221             1245567799999999999999999999999999   999999655 566666


Q ss_pred             HHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         202 IKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       202 l~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++++ .+.++-|+.+||.++++.+++|++++|. .|+.
T Consensus       171 lERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le-~GkV  207 (352)
T COG4148         171 LERLRDEINIPILYVSHSLDEVLRLADRVVVLE-NGKV  207 (352)
T ss_pred             HHHHHHhcCCCEEEEecCHHHHHhhhheEEEec-CCeE
Confidence            6654 4568999999999999999999999999 6654

>PRK13409 putative ATPase RIL; Provisional

Probab=99.94  E-value=8.4e-29  Score=241.50  Aligned_cols=158  Identities=16%  Similarity=0.124  Sum_probs=118.7

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeee----
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYS----  142 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----  142 (302)
                      ++++++.|++||+++|+||||||||||+++|+|+++|++|.+.+..    .++...  +........++.+++.+.    
T Consensus       355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~----~i~y~~--Q~~~~~~~~tv~e~l~~~~~~~  428 (590)
T PRK13409        355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPEL----KISYKP--QYIKPDYDGTVEDLLRSITDDL  428 (590)
T ss_pred             EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEee----eEEEec--ccccCCCCCcHHHHHHHHhhhc
Confidence            5678899999999999999999999999999999999999887641    111100  000001111222222110    


Q ss_pred             ---------e-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCC-CcE
Q psy2071         143 ---------I-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRAD-LKL  210 (302)
Q Consensus       143 ---------~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~-~~~  210 (302)
                               + .+......++.+..|||||+||++||++|+.+|++|||||   ||+++|+.. ..+.+++++..+ .+.
T Consensus       429 ~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDE---Pt~~LD~~~~~~l~~~l~~l~~~~g~  505 (590)
T PRK13409        429 GSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDE---PSAHLDVEQRLAVAKAIRRIAEEREA  505 (590)
T ss_pred             ChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CccCCCHHHHHHHHHHHHHHHHhCCC
Confidence                     0 0111122456778899999999999999999999999999   999999887 778888887644 478


Q ss_pred             EEEEEecCHHHHHhhccCCCeee
Q psy2071         211 VIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       211 ~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      |+|++|||++++..+||++++|+
T Consensus       506 tviivsHD~~~~~~~aDrvivl~  528 (590)
T PRK13409        506 TALVVDHDIYMIDYISDRLMVFE  528 (590)
T ss_pred             EEEEEeCCHHHHHHhCCEEEEEc
Confidence            99999999999999999999986

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.94  E-value=9.2e-29  Score=221.75  Aligned_cols=179  Identities=18%  Similarity=0.202  Sum_probs=136.4

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH---HH---HHHhh------hhh
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM---SV---AQRVS------EEM  131 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~---~~---~~~~~------~~~  131 (302)
                      +.+.+++++.+.+|+.++|+|++|||||||-..++.++++. |.|.+.|++.......   .+   .+-|+      ..+
T Consensus       300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsP  378 (534)
T COG4172         300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSP  378 (534)
T ss_pred             eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCc
Confidence            44689999999999999999999999999999999998866 9999999875432211   11   12222      233


Q ss_pred             ccccccceeeeeeecCCC----------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071         132 DCQLGQEVGYSIRFEDCS----------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL  189 (302)
Q Consensus       132 ~~~~~~~v~~~~~~~~~~----------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~  189 (302)
                      .+++++-++..+..+...                      ..++...++||||+||++||||++.+|++++|||   ||+
T Consensus       379 RmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDE---PTS  455 (534)
T COG4172         379 RMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDE---PTS  455 (534)
T ss_pred             ccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecC---Cch
Confidence            456666666666544321                      1233456699999999999999999999999999   999


Q ss_pred             chHHHH-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecC
Q psy2071         190 ATDILM-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTP  247 (302)
Q Consensus       190 ~lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~  247 (302)
                      ++|... ..+.++++.+ .+.+.+.+++|||+..+..+||+++||+ .|+    +...++|..|
T Consensus       456 ALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~-~GkiVE~G~~~~if~~P  518 (534)
T COG4172         456 ALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR-DGKIVEQGPTEAVFANP  518 (534)
T ss_pred             HhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe-CCEEeeeCCHHHHhcCC
Confidence            999766 7777777754 3568999999999999999999999999 554    3344444444

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.94  E-value=1.8e-28  Score=218.28  Aligned_cols=166  Identities=13%  Similarity=0.164  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v  139 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++ ++|.+.++|.+............+   .+   .+..++.+++
T Consensus        19 ~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl   97 (275)
T cd03289          19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL   97 (275)
T ss_pred             ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHh
Confidence            5899999999999999999999999999999999997 789999998765332211111111   11   1112344444


Q ss_pred             eeeeeec-----------CC-CCccccc-----------cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         140 GYSIRFE-----------DC-SSPKTVL-----------KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       140 ~~~~~~~-----------~~-~~~~~~~-----------~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+.-...           .. ...+..+           ..||+||+||++||||++.+|++|||||   |++++|+.. 
T Consensus        98 ~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDE---pts~LD~~~~  174 (275)
T cd03289          98 DPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE---PSAHLDPITY  174 (275)
T ss_pred             hhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC---ccccCCHHHH
Confidence            2110000           00 0001111           2499999999999999999999999999   999999887 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ..+.+++..... +.|||++||+++.+.. ||++++|+ .|+.
T Consensus       175 ~~l~~~l~~~~~-~~tii~isH~~~~i~~-~dri~vl~-~G~i  214 (275)
T cd03289         175 QVIRKTLKQAFA-DCTVILSEHRIEAMLE-CQRFLVIE-ENKV  214 (275)
T ss_pred             HHHHHHHHHhcC-CCEEEEEECCHHHHHh-CCEEEEec-CCeE
Confidence            778888876543 7899999999998875 99999998 6654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.94  E-value=5.5e-28  Score=204.93  Aligned_cols=172  Identities=16%  Similarity=0.203  Sum_probs=127.8

Q ss_pred             hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-HHHHHHh---hhhh------c
Q psy2071          63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-MSVAQRV---SEEM------D  132 (302)
Q Consensus        63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-~~~~~~~---~~~~------~  132 (302)
                      ...++++|+.+|++||.++|+||||||||||+++++|.++|++|.+.+.|....+... ..+.+++   +.+.      .
T Consensus        43 gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~  122 (257)
T COG1119          43 GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVR  122 (257)
T ss_pred             CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccc
Confidence            3456899999999999999999999999999999999999999999998876543332 1222211   1111      1


Q ss_pred             cccccce--------eeee----------------eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         133 CQLGQEV--------GYSI----------------RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       133 ~~~~~~v--------~~~~----------------~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      .++.+-|        |..-                .+......++....||-||+||+.|||||+.+|.+|||||   |+
T Consensus       123 ~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDE---P~  199 (257)
T COG1119         123 ETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDE---PA  199 (257)
T ss_pred             cccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecC---cc
Confidence            1222221        1110                0111113455667799999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCC--cEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         189 LATDILM-GVLKEVIKQRADL--KLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~--~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .++|... ..+.+.+......  +.++++|||..+++-..++++..++ +|+.
T Consensus       200 ~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~-~g~v  251 (257)
T COG1119         200 QGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLK-EGEV  251 (257)
T ss_pred             ccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEee-CCce
Confidence            9999877 5666666655433  7899999999999999999999998 6653

>KOG0926|consensus

Probab=99.94  E-value=1.4e-26  Score=220.76  Aligned_cols=230  Identities=40%  Similarity=0.650  Sum_probs=193.3

Q ss_pred             hhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc---ccccCC-CEEEeecCchhhhHHHHH
Q psy2071          49 PRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE---YSKSVG-AKAVACTQPRRVAAMSVA  124 (302)
Q Consensus        49 ~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~---~~~~~G-~~~i~~~~~~~~~~~~~~  124 (302)
                      +|-.|+.+.|..||++.-.+.|..+|+.+.++.|.|.+||||||++++++-.   -.+.+- ...|.-++|||++++.++
T Consensus       243 ~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamA  322 (1172)
T KOG0926|consen  243 SRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMA  322 (1172)
T ss_pred             cCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHH
Confidence            4556899999999999999999999999999999999999999999998533   222111 234566899999999999


Q ss_pred             HHhhhhhccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHH
Q psy2071         125 QRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQ  204 (302)
Q Consensus       125 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~  204 (302)
                      ++|+.+++. .+..|+|.+||+.....++.+.+|++|.+.|..-.+-|+..+++||+|||||+..++|.+.++|..++..
T Consensus       323 kRVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~L  401 (1172)
T KOG0926|consen  323 KRVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPL  401 (1172)
T ss_pred             HHHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHH
Confidence            999999987 8899999999999999999999999999999999999999999999999999999999999998888764


Q ss_pred             cC----------CCcEEEEEEecCHHHHH---hhccC-CCeeeecCcCCccceeecCCCCCCC----------------C
Q psy2071         205 RA----------DLKLVIMSATLDAGKFQ---QYFDN-APLMNVPGRTHPVEIFYTPEPPLGA----------------G  254 (302)
Q Consensus       205 ~~----------~~~~~ii~~thd~~~~~---~~~d~-~~~l~i~g~~~~~~~~~~~~~~~~~----------------~  254 (302)
                      +.          -++.+||++|.-++.+.   .+|-- -++|.++.|.|||.+++......+|                .
T Consensus       402 R~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~  481 (1172)
T KOG0926|consen  402 RQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPP  481 (1172)
T ss_pred             HHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCC
Confidence            32          35889999999776665   23332 3578899999999999987765432                2


Q ss_pred             CCCcccccCchhHHHHhhHHHhHhh
Q psy2071         255 PWLPQCFTRPNEAKKAADDAKMRFA  279 (302)
Q Consensus       255 ~~l~~~~~~~~~~~~~~~~~~~~~~  279 (302)
                      ..+-+|.+++.+....+..++.+|.
T Consensus       482 G~ILVFvTGQqEV~qL~~kLRK~~p  506 (1172)
T KOG0926|consen  482 GGILVFVTGQQEVDQLCEKLRKRFP  506 (1172)
T ss_pred             CcEEEEEeChHHHHHHHHHHHhhCc
Confidence            2334678889999999988888764

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.94  E-value=1.4e-28  Score=241.81  Aligned_cols=167  Identities=19%  Similarity=0.204  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~  138 (302)
                      .+++++++.|++|+.++|+|+||||||||+++|+|++ |++|++.++|.+..........+.+   .+   .++.++.+|
T Consensus       364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eN  442 (588)
T PRK11174        364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDN  442 (588)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHH
Confidence            3589999999999999999999999999999999999 9999999999876554433333322   22   345577777


Q ss_pred             eeeeee-ecC------------------C-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         139 VGYSIR-FED------------------C-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       139 v~~~~~-~~~------------------~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      +.+.-. ...                  . ...++.+    ..||||||||++||||++.+|++|||||   ||+++|..
T Consensus       443 I~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE---~TSaLD~~  519 (588)
T PRK11174        443 VLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDE---PTASLDAH  519 (588)
T ss_pred             hhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC---CccCCCHH
Confidence            776521 100                  0 0113333    3599999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      . ..+.+.+....+ +.|+|++||.++.+. .||++++|+ .|+.
T Consensus       520 te~~i~~~l~~~~~-~~TvIiItHrl~~i~-~aD~Iivl~-~G~i  561 (588)
T PRK11174        520 SEQLVMQALNAASR-RQTTLMVTHQLEDLA-QWDQIWVMQ-DGQI  561 (588)
T ss_pred             HHHHHHHHHHHHhC-CCEEEEEecChHHHH-hCCEEEEEe-CCeE
Confidence            8 667777766533 678999999998775 599999998 6653

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.94  E-value=3.8e-29  Score=212.93  Aligned_cols=154  Identities=13%  Similarity=0.063  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH------HHHHHhhhhhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM------SVAQRVSEEMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~v  139 (302)
                      +.+++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+.......      .+.+........++.+++
T Consensus        15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l   94 (198)
T TIGR01189        15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENL   94 (198)
T ss_pred             EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHH
Confidence            57889999999999999999999999999999999999999999988653221100      000110001112333333


Q ss_pred             eeeeee---------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071         140 GYSIRF---------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK  203 (302)
Q Consensus       140 ~~~~~~---------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~  203 (302)
                      .+....               ......++.+..||+||+||++||+|++.+|++|||||   |++++|+.. ..+.+++.
T Consensus        95 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---Pt~~LD~~~~~~l~~~l~  171 (198)
T TIGR01189        95 HFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDE---PTTALDKAGVALLAGLLR  171 (198)
T ss_pred             HHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC---CCcCCCHHHHHHHHHHHH
Confidence            221100               00011245667799999999999999999999999999   999999877 77888887


Q ss_pred             HcCCCcEEEEEEecCHHHH
Q psy2071         204 QRADLKLVIMSATLDAGKF  222 (302)
Q Consensus       204 ~~~~~~~~ii~~thd~~~~  222 (302)
                      ...+.+.|+|++||+...+
T Consensus       172 ~~~~~~~tii~~sH~~~~~  190 (198)
T TIGR01189       172 AHLARGGIVLLTTHQDLGL  190 (198)
T ss_pred             HHHhCCCEEEEEEcccccc
Confidence            6655578999999987544

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.6e-28  Score=227.31  Aligned_cols=174  Identities=17%  Similarity=0.185  Sum_probs=133.1

Q ss_pred             cCCChh-HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh---hh
Q psy2071          59 ITLPVF-EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE---EM  131 (302)
Q Consensus        59 ~~lp~~-~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~---~~  131 (302)
                      ...|.- ....++++++++|+.++|+|+||||||||++.|+|+.+|+.|++.++|.+.+........++   +.+   .+
T Consensus       328 ~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf  407 (559)
T COG4988         328 FRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLF  407 (559)
T ss_pred             EecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccc
Confidence            344544 56899999999999999999999999999999999999999999999987655443333322   222   23


Q ss_pred             ccccccceeeeeeec------------------C-CCCccccccc----cCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         132 DCQLGQEVGYSIRFE------------------D-CSSPKTVLKY----MTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       132 ~~~~~~~v~~~~~~~------------------~-~~~~~~~~~~----lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      ..++++|+.+.-...                  . ....++.+..    |||||+||+++||||+.+++++|+||   ||
T Consensus       408 ~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDE---pT  484 (559)
T COG4988         408 AGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDE---PT  484 (559)
T ss_pred             cccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecC---Cc
Confidence            445666664432110                  0 1122444544    99999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++|... ..+.+.+.+..+. .|++++||++..+. -+|+|++|+ .|+.
T Consensus       485 A~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~~~~-~~D~I~vld-~G~l  532 (559)
T COG4988         485 AHLDAETEQIILQALQELAKQ-KTVLVITHRLEDAA-DADRIVVLD-NGRL  532 (559)
T ss_pred             cCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChHHHh-cCCEEEEec-CCce
Confidence            9999888 7777777776554 78888999998775 589999999 6653

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=8.2e-29  Score=219.64  Aligned_cols=165  Identities=14%  Similarity=0.152  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-----CCCEEEeecCch--hhhHHHHHH---Hhhh---hhc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-----VGAKAVACTQPR--RVAAMSVAQ---RVSE---EMD  132 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-----~G~~~i~~~~~~--~~~~~~~~~---~~~~---~~~  132 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|+     .|.+.+.|.+..  .........   .+.+   .+.
T Consensus        22 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~  101 (261)
T PRK14258         22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP  101 (261)
T ss_pred             EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc
Confidence            578999999999999999999999999999999999985     788888775431  111000000   0111   111


Q ss_pred             cccccceeeeee-------------------ecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         133 CQLGQEVGYSIR-------------------FEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       133 ~~~~~~v~~~~~-------------------~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      .++.+++.+...                   ....     ...++....||+||+||++||++|+.+|++|||||   |+
T Consensus       102 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDE---P~  178 (261)
T PRK14258        102 MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDE---PC  178 (261)
T ss_pred             ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CC
Confidence            233333322100                   0000     01234557799999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         189 LATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      +++|+.. ..+.+++.... +.+.|++++||+++++.++||++++|+
T Consensus       179 ~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~  225 (261)
T PRK14258        179 FGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFK  225 (261)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEc
Confidence            9999887 77778777643 347899999999999999999999998

>KOG0055|consensus

Probab=99.94  E-value=1.8e-28  Score=246.38  Aligned_cols=169  Identities=18%  Similarity=0.260  Sum_probs=135.5

Q ss_pred             hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccc
Q psy2071          63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLG  136 (302)
Q Consensus        63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~  136 (302)
                      ...+++++++.|++|+.++|+|+|||||||++++|.+++.|++|+|.++|.+.+......+..++   .+   .+..++.
T Consensus       365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~  444 (1228)
T KOG0055|consen  365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIR  444 (1228)
T ss_pred             cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHH
Confidence            44678999999999999999999999999999999999999999999999987766555544433   22   3466788


Q ss_pred             cceeeeeeecCCC--------------------Cccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071         137 QEVGYSIRFEDCS--------------------SPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD  192 (302)
Q Consensus       137 ~~v~~~~~~~~~~--------------------~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD  192 (302)
                      +|+.|........                    ..++.+    -.||||||||++|||||+.+|++|||||   +|++||
T Consensus       445 eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDE---aTSaLD  521 (1228)
T KOG0055|consen  445 ENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDE---ATSALD  521 (1228)
T ss_pred             HHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecC---cccccC
Confidence            8888765221000                    112222    2299999999999999999999999999   999999


Q ss_pred             HHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         193 ILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       193 ~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +.. ..+.+.+..... |.|.|+++|.+..+.. +|++++|+ .|.
T Consensus       522 ~~se~~Vq~ALd~~~~-grTTivVaHRLStIrn-aD~I~v~~-~G~  564 (1228)
T KOG0055|consen  522 AESERVVQEALDKASK-GRTTIVVAHRLSTIRN-ADKIAVME-EGK  564 (1228)
T ss_pred             HHHHHHHHHHHHHhhc-CCeEEEEeeehhhhhc-cCEEEEEE-CCE
Confidence            888 788888876654 5577777999999987 99999999 443

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.6e-28  Score=218.20  Aligned_cols=169  Identities=18%  Similarity=0.228  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCch----hhhHHHHH---HHhhhh--
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPR----RVAAMSVA---QRVSEE--  130 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~----~~~~~~~~---~~~~~~--  130 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+..|     ++|++.+.|....    ........   ..+.+.  
T Consensus        30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~  109 (265)
T PRK14252         30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN  109 (265)
T ss_pred             eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCc
Confidence            468999999999999999999999999999999999875     6899998764321    00000000   011110  


Q ss_pred             -hccccccceeeeee-------------------ecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCC
Q psy2071         131 -MDCQLGQEVGYSIR-------------------FEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH  185 (302)
Q Consensus       131 -~~~~~~~~v~~~~~-------------------~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~  185 (302)
                       ...++.+++.+...                   ....     ...+.....||+||+||++||++|+.+|+++||||  
T Consensus       110 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE--  187 (265)
T PRK14252        110 PFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDE--  187 (265)
T ss_pred             CCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC--
Confidence             01133333322110                   0000     01234557799999999999999999999999999  


Q ss_pred             CCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         186 ERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       186 ~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       |++++|+.. ..+.+++.+... +.|++++||+++++.++||++++|+ .|+.
T Consensus       188 -Pt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~-~G~i  238 (265)
T PRK14252        188 -PTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYMY-MGEL  238 (265)
T ss_pred             -CCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence             999999877 778888877654 5899999999999999999999998 6664

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.94  E-value=7.8e-29  Score=263.56  Aligned_cols=169  Identities=14%  Similarity=0.086  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-h-HHH----HHHHhhhhhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-A-AMS----VAQRVSEEMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-~-~~~----~~~~~~~~~~~~~~~~  138 (302)
                      .+++++++.|++||+++|+|+||||||||+++|+|+++|++|++.+.|.+.... . ...    ..+........++.++
T Consensus      1953 ~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~ 2032 (2272)
T TIGR01257      1953 PAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREH 2032 (2272)
T ss_pred             eEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHH
Confidence            368999999999999999999999999999999999999999999998765321 0 000    0111111122344444


Q ss_pred             eeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH
Q psy2071         139 VGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL  198 (302)
Q Consensus       139 v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l  198 (302)
                      +.+..+.                   +.....++.+..||||||||+++|+||+.+|++|||||   |++++|+.. ..+
T Consensus      2033 L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDE---PTsGLDp~sr~~l 2109 (2272)
T TIGR01257      2033 LYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDE---PTTGMDPQARRML 2109 (2272)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC---CCCCCCHHHHHHH
Confidence            4321111                   01112355677899999999999999999999999999   999999988 788


Q ss_pred             HHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         199 KEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       199 ~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      .+++....+.|.+||++||+++++..+||++++|+ .|+
T Consensus      2110 ~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~-~G~ 2147 (2272)
T TIGR01257      2110 WNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMV-KGA 2147 (2272)
T ss_pred             HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence            89888765558899999999999999999999998 554

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.94  E-value=7.6e-29  Score=210.55  Aligned_cols=155  Identities=10%  Similarity=0.095  Sum_probs=112.5

Q ss_pred             HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH---HHHHHHhhhhhccccccceeeee---
Q psy2071          70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA---MSVAQRVSEEMDCQLGQEVGYSI---  143 (302)
Q Consensus        70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~---  143 (302)
                      +++.|++|++++|+|+||||||||+++|+|+.+|++|++.++|.+......   ..+.+........++.+++.+..   
T Consensus        19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~   98 (195)
T PRK13541         19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIY   98 (195)
T ss_pred             EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhc
Confidence            788999999999999999999999999999999999999998865432110   00011111112233333332211   


Q ss_pred             ----------ee-cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEE
Q psy2071         144 ----------RF-EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLV  211 (302)
Q Consensus       144 ----------~~-~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~  211 (302)
                                .. ......++....||+||+||+++|+|++.+|+++||||   |++++|+.. ..+.+++....+.+.|
T Consensus        99 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDE---P~~~LD~~~~~~l~~~l~~~~~~~~t  175 (195)
T PRK13541         99 NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDE---VETNLSKENRDLLNNLIVMKANSGGI  175 (195)
T ss_pred             ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHHHHHHHHHhCCCE
Confidence                      00 00112345667899999999999999999999999999   999999887 7788888654455789


Q ss_pred             EEEEecCHHHHHhhccC
Q psy2071         212 IMSATLDAGKFQQYFDN  228 (302)
Q Consensus       212 ii~~thd~~~~~~~~d~  228 (302)
                      ++++||+.+.+.. +|.
T Consensus       176 iii~sh~~~~i~~-~~~  191 (195)
T PRK13541        176 VLLSSHLESSIKS-AQI  191 (195)
T ss_pred             EEEEeCCccccch-hhe
Confidence            9999999987754 543

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.1e-28  Score=223.42  Aligned_cols=176  Identities=14%  Similarity=0.144  Sum_probs=126.1

Q ss_pred             hcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchhhh-----HHHHHHHh
Q psy2071          58 RITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRRVA-----AMSVAQRV  127 (302)
Q Consensus        58 r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~~~-----~~~~~~~~  127 (302)
                      ...++...+++++++.|.+|++++|+|+||||||||+++|+|+++     |++|.+.+.|.+.....     ......++
T Consensus        52 ~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v  131 (305)
T PRK14264         52 DVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMV  131 (305)
T ss_pred             EEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEE
Confidence            333443446899999999999999999999999999999999986     68999999886542110     00001111


Q ss_pred             hhh---hccccccceeeeeeec-------------------------------CC-----CCccccccccCHHHHHHHhc
Q psy2071         128 SEE---MDCQLGQEVGYSIRFE-------------------------------DC-----SSPKTVLKYMTDGMLLREGM  168 (302)
Q Consensus       128 ~~~---~~~~~~~~v~~~~~~~-------------------------------~~-----~~~~~~~~~lS~G~~qr~~l  168 (302)
                      .+.   +..++.+++.+.....                               ..     ...+.....||+||+||++|
T Consensus       132 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~L  211 (305)
T PRK14264        132 FQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCI  211 (305)
T ss_pred             ccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHH
Confidence            111   1123333333211000                               00     01133456799999999999


Q ss_pred             cccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCC-eeeecCcC
Q psy2071         169 SDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAP-LMNVPGRT  238 (302)
Q Consensus       169 a~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~-~l~i~g~~  238 (302)
                      |+||+.+|++|||||   |++++|+.. ..+.+++....+ +.|+|++||+++.+..+||+++ +|+ .|+.
T Consensus       212 AraL~~~p~lLLLDE---PtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~-~G~i  278 (305)
T PRK14264        212 ARCLAVDPEVILMDE---PASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQTAVFLT-GGEL  278 (305)
T ss_pred             HHHHhcCCCEEEEeC---CcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEec-CCEE
Confidence            999999999999999   999999887 778888887655 4789999999999999999974 566 5653

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.5e-28  Score=216.63  Aligned_cols=168  Identities=15%  Similarity=0.157  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchhh-----hHHHHHHHhhh---hhc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRRV-----AAMSVAQRVSE---EMD  132 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~~-----~~~~~~~~~~~---~~~  132 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+..     |++|++.++|......     .......++.+   .+.
T Consensus        18 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~   97 (250)
T PRK14266         18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFP   97 (250)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCc
Confidence            5788999999999999999999999999999999864     3889999988654210     00000111111   111


Q ss_pred             cccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         133 CQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       133 ~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      .++.+++.+.....                   ..     ...++....||+||+||++||+||+.+|++|||||   |+
T Consensus        98 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE---P~  174 (250)
T PRK14266         98 KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDE---PC  174 (250)
T ss_pred             chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC---CC
Confidence            23334433221100                   00     01134567799999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++|+.. ..+.+++.+..+ +.||+++||+.+++..+||++.+|+ .|+.
T Consensus       175 ~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~~~~i~~l~-~G~i  223 (250)
T PRK14266        175 SALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQATRVSKYTSFFL-NGEI  223 (250)
T ss_pred             ccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHHhhcCEEEEEE-CCeE
Confidence            9999877 778888887654 6899999999999999999999997 5653

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA

Probab=99.94  E-value=4.1e-26  Score=233.89  Aligned_cols=192  Identities=47%  Similarity=0.804  Sum_probs=176.0

Q ss_pred             HhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccc
Q psy2071          56 RKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQL  135 (302)
Q Consensus        56 ~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  135 (302)
                      +.+..||++..+++|...|..+++++|.|++||||||++++++...... ....|.+++|+++++.+++.+++.+++..+
T Consensus        61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~-~~~~I~~tQPRRlAA~svA~RvA~elg~~l  139 (1283)
T TIGR01967        61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRG-SHGLIGHTQPRRLAARTVAQRIAEELGTPL  139 (1283)
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCC-CCceEecCCccHHHHHHHHHHHHHHhCCCc
Confidence            4556799999999999999999999999999999999999998654321 134678999999999999999999999999


Q ss_pred             ccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEE
Q psy2071         136 GQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSA  215 (302)
Q Consensus       136 ~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~  215 (302)
                      ++.|||.++++...+.++.+.+++.|...+....+.++.++++||+||+||++..+|.++..+++++..+.+.+++++++
T Consensus       140 G~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSA  219 (1283)
T TIGR01967       140 GEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSA  219 (1283)
T ss_pred             ceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeC
Confidence            99999999999988889999999999999999999999999999999999999999999988899988778889999999


Q ss_pred             ecCHHHHHhhccCCCeeeecCcCCccceeecCC
Q psy2071         216 TLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPE  248 (302)
Q Consensus       216 thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~  248 (302)
                      |-|.+.+.+++...+++.++|+.+|++++|.+.
T Consensus       220 Tld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~  252 (1283)
T TIGR01967       220 TIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPL  252 (1283)
T ss_pred             CcCHHHHHHHhcCCCEEEECCCcccceeEEecc
Confidence            999999999999999999999999999999764

This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.94  E-value=2.2e-28  Score=238.47  Aligned_cols=166  Identities=17%  Similarity=0.172  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeec--------CchhhhHHHHHHHhhhh------
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT--------QPRRVAAMSVAQRVSEE------  130 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~--------~~~~~~~~~~~~~~~~~------  130 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|++|.+.+.+.        ++......++...+...      
T Consensus        21 ~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~  100 (556)
T PRK11819         21 QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKA  100 (556)
T ss_pred             eeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHH
Confidence            3678999999999999999999999999999999999999999877531        11000000111111000      


Q ss_pred             -----------hccc-------------------------cccceeeeeeecCCCCccccccccCHHHHHHHhccccCCC
Q psy2071         131 -----------MDCQ-------------------------LGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLE  174 (302)
Q Consensus       131 -----------~~~~-------------------------~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~  174 (302)
                                 ....                         ....+...+........++.+..|||||+||++||++|+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~  180 (556)
T PRK11819        101 ALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLE  180 (556)
T ss_pred             HHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhC
Confidence                       0000                         0000000000001112356778899999999999999999


Q ss_pred             CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         175 NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       175 ~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +|++|||||   ||+++|+.. ..+.++++...   .|||++|||.+++..+||++++|+ .|+
T Consensus       181 ~p~vlLLDE---Pt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~~~~~d~i~~l~-~g~  237 (556)
T PRK11819        181 KPDMLLLDE---PTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFLDNVAGWILELD-RGR  237 (556)
T ss_pred             CCCEEEEcC---CCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcCeEEEEe-CCE
Confidence            999999999   999999887 77888887653   489999999999999999999998 665

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.94  E-value=2.8e-28  Score=243.45  Aligned_cols=166  Identities=15%  Similarity=0.179  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~  138 (302)
                      .+++++++.|++|+.++|+|+||||||||+++|+|++.|++|++.++|.+.+........+.+   .+   .+..++.+|
T Consensus       467 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN  546 (686)
T TIGR03797       467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFEN  546 (686)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHH
Confidence            368999999999999999999999999999999999999999999999876554433333222   12   234566666


Q ss_pred             eeeeeeecC-------------------CCCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         139 VGYSIRFED-------------------CSSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       139 v~~~~~~~~-------------------~~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+.-....                   ....++.+    ..||||||||++|||||+.+|++|||||   ||+++|+..
T Consensus       547 i~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDE---pTS~LD~~t  623 (686)
T TIGR03797       547 IAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDE---ATSALDNRT  623 (686)
T ss_pred             HhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC---CccCCCHHH
Confidence            655321000                   00112322    4599999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+.+...   +.|+|++||+++.+. .||++++|+ .|+.
T Consensus       624 e~~i~~~L~~~---~~T~IiItHr~~~i~-~~D~Iivl~-~G~i  662 (686)
T TIGR03797       624 QAIVSESLERL---KVTRIVIAHRLSTIR-NADRIYVLD-AGRV  662 (686)
T ss_pred             HHHHHHHHHHh---CCeEEEEecChHHHH-cCCEEEEEE-CCEE
Confidence             6677776654   469999999998876 599999998 6653

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.4e-28  Score=238.83  Aligned_cols=167  Identities=16%  Similarity=0.159  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC--------chhhhHHHHHHHhh--------
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ--------PRRVAAMSVAQRVS--------  128 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~--------~~~~~~~~~~~~~~--------  128 (302)
                      .+.+++++.|++|++++|+||||||||||+++|+|+++|++|.+.+.+..        +......++...+.        
T Consensus        15 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~   94 (530)
T PRK15064         15 PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWE   94 (530)
T ss_pred             EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHH
Confidence            35789999999999999999999999999999999999999999886521        00000000000000        


Q ss_pred             ---------hhhcc---------------------ccccceeeeeeecCCC--CccccccccCHHHHHHHhccccCCCCC
Q psy2071         129 ---------EEMDC---------------------QLGQEVGYSIRFEDCS--SPKTVLKYMTDGMLLREGMSDPMLENY  176 (302)
Q Consensus       129 ---------~~~~~---------------------~~~~~v~~~~~~~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p  176 (302)
                               .....                     .....+...+......  ..+..+..|||||+||++||++|+.+|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p  174 (530)
T PRK15064         95 VKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNP  174 (530)
T ss_pred             HHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCC
Confidence                     00000                     0000000000001111  113457889999999999999999999


Q ss_pred             cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         177 QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       177 ~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++|||||   ||+++|+.. ..+.+++..   .+.|||++|||.+.+.++||++++|+ .|+.
T Consensus       175 ~lLlLDE---Pt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~d~i~~l~-~g~i  230 (530)
T PRK15064        175 DILLLDE---PTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHFLNSVCTHMADLD-YGEL  230 (530)
T ss_pred             CEEEEcC---CCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHhhcceEEEEe-CCEE
Confidence            9999999   999999887 777787754   37899999999999999999999998 6653

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.94  E-value=3.8e-28  Score=243.40  Aligned_cols=166  Identities=16%  Similarity=0.192  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---h---hhhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---S---EEMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~  138 (302)
                      .+++++++.|++|+.++|+|+||||||||+++|+|++.|++|.+.++|.+.+..........+   .   ..+..++.+|
T Consensus       493 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eN  572 (710)
T TIGR03796       493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDN  572 (710)
T ss_pred             CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHH
Confidence            368999999999999999999999999999999999999999999999876654433333222   1   1234566666


Q ss_pred             eeeeee-ec------------------CC-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         139 VGYSIR-FE------------------DC-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       139 v~~~~~-~~------------------~~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      +.+.-. ..                  .. ...++.+    ..|||||+||++|||||+.+|++|||||   ||+++|..
T Consensus       573 i~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDE---ptS~LD~~  649 (710)
T TIGR03796       573 LTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDE---ATSALDPE  649 (710)
T ss_pred             hhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEEC---ccccCCHH
Confidence            654311 00                  00 0112322    4599999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      . ..+.+.+..   .+.|+|++||+++.+.. ||++++|+ .|+.
T Consensus       650 te~~i~~~l~~---~~~T~IiitHrl~~i~~-~D~Iivl~-~G~i  689 (710)
T TIGR03796       650 TEKIIDDNLRR---RGCTCIIVAHRLSTIRD-CDEIIVLE-RGKV  689 (710)
T ss_pred             HHHHHHHHHHh---cCCEEEEEecCHHHHHh-CCEEEEEe-CCEE
Confidence            7 666666654   37899999999988764 99999998 6653

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=2.6e-28  Score=236.82  Aligned_cols=164  Identities=17%  Similarity=0.159  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccccccee----
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVG----  140 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----  140 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|++|.+.+.+..  +++...+..........++.+++.    
T Consensus       333 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~--~i~~~~q~~~~~~~~~~t~~~~~~~~~~  410 (530)
T PRK15064        333 PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENA--NIGYYAQDHAYDFENDLTLFDWMSQWRQ  410 (530)
T ss_pred             eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCce--EEEEEcccccccCCCCCcHHHHHHHhcc
Confidence            46789999999999999999999999999999999999999999876531  111111000000000011111111    


Q ss_pred             ---------eee-eecC-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCC
Q psy2071         141 ---------YSI-RFED-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADL  208 (302)
Q Consensus       141 ---------~~~-~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~  208 (302)
                               ..+ .+.. ....++.+..|||||+||++||++++.+|++|||||   ||+++|+.. ..+.+++...   
T Consensus       411 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE---Pt~~LD~~~~~~l~~~l~~~---  484 (530)
T PRK15064        411 EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE---PTNHMDMESIESLNMALEKY---  484 (530)
T ss_pred             CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC---CCCCCCHHHHHHHHHHHHHC---
Confidence                     001 1111 012356778899999999999999999999999999   999999887 7788888765   


Q ss_pred             cEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         209 KLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       209 ~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +.|||++|||.+++..+||++++|+ .|+
T Consensus       485 ~~tvi~vsHd~~~~~~~~d~i~~l~-~g~  512 (530)
T PRK15064        485 EGTLIFVSHDREFVSSLATRIIEIT-PDG  512 (530)
T ss_pred             CCEEEEEeCCHHHHHHhCCEEEEEE-CCe
Confidence            3489999999999999999999998 554

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.94  E-value=3e-28  Score=237.39  Aligned_cols=166  Identities=17%  Similarity=0.142  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC--------chhhhHHHHHHHhhhh------
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ--------PRRVAAMSVAQRVSEE------  130 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~--------~~~~~~~~~~~~~~~~------  130 (302)
                      .+++++++.|++|++++|+|+||||||||+++|+|+++|++|.+.+.+..        +.-....++...+...      
T Consensus        19 ~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~   98 (552)
T TIGR03719        19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKD   98 (552)
T ss_pred             eeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHH
Confidence            36789999999999999999999999999999999999999998775321        1000000111111000      


Q ss_pred             -----------hccccc----------------ccee---------eeeeecCCCCccccccccCHHHHHHHhccccCCC
Q psy2071         131 -----------MDCQLG----------------QEVG---------YSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLE  174 (302)
Q Consensus       131 -----------~~~~~~----------------~~v~---------~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~  174 (302)
                                 +.....                +.++         ..+........++.+..|||||+||++||++|+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~  178 (552)
T TIGR03719        99 ALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLS  178 (552)
T ss_pred             HHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhc
Confidence                       000000                0000         0000001111356678899999999999999999


Q ss_pred             CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         175 NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       175 ~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +|++|||||   ||+++|+.. ..+.+++...   +.+||++|||.+.+..+||++++|+ .|+
T Consensus       179 ~p~lLLLDE---Pt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d~v~~l~-~g~  235 (552)
T TIGR03719       179 KPDMLLLDE---PTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAGWILELD-RGR  235 (552)
T ss_pred             CCCEEEEcC---CCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEEEEE-CCE
Confidence            999999999   999999888 7788888765   2489999999999999999999998 665

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=7e-28  Score=237.81  Aligned_cols=168  Identities=14%  Similarity=0.129  Sum_probs=121.6

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC--------c-----hhhhHHHHHHHhhhh
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ--------P-----RRVAAMSVAQRVSEE  130 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~--------~-----~~~~~~~~~~~~~~~  130 (302)
                      ..+++++++.|++|++++|+||||||||||+++|+|+++|++|.|.+.+..        .     ..+..+.........
T Consensus        14 ~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~   93 (638)
T PRK10636         14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQ   93 (638)
T ss_pred             ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHH
Confidence            346789999999999999999999999999999999999999999876531        1     011111110000000


Q ss_pred             hc---------------------------cccccceeeeeeecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEE
Q psy2071         131 MD---------------------------CQLGQEVGYSIRFEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILL  181 (302)
Q Consensus       131 ~~---------------------------~~~~~~v~~~~~~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliL  181 (302)
                      ..                           ......+...+.....  ...++.+..|||||+||++||++|+.+|++|||
T Consensus        94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLL  173 (638)
T PRK10636         94 LEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLL  173 (638)
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEE
Confidence            00                           0000000000111111  123567788999999999999999999999999


Q ss_pred             cCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         182 DEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       182 DE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ||   ||+++|+.. ..+.+++...   +.+||++|||.+++..+||++++|+ .|+.
T Consensus       174 DE---Ptn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~~d~i~~L~-~G~i  224 (638)
T PRK10636        174 DE---PTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPIVDKIIHIE-QQSL  224 (638)
T ss_pred             cC---CCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHhcCEEEEEe-CCEE
Confidence            99   999999877 7788887765   4589999999999999999999998 6654

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.94  E-value=3.4e-28  Score=234.00  Aligned_cols=175  Identities=9%  Similarity=0.063  Sum_probs=124.1

Q ss_pred             CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-cCCCEEEeecCch----------hhhHHHHHHHhh
Q psy2071          60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-SVGAKAVACTQPR----------RVAAMSVAQRVS  128 (302)
Q Consensus        60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-~~G~~~i~~~~~~----------~~~~~~~~~~~~  128 (302)
                      .++...+++++++.|++|++++|+||||||||||+++|+|+.++ ++|++.+.|....          .++...+.....
T Consensus       269 ~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~  348 (490)
T PRK10938        269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLD  348 (490)
T ss_pred             EECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhh
Confidence            33333467999999999999999999999999999999998765 6899999885321          011111110000


Q ss_pred             hhhccccccceee----------------------ee-eecCCC-CccccccccCHHHHHHHhccccCCCCCcEEEEcCC
Q psy2071         129 EEMDCQLGQEVGY----------------------SI-RFEDCS-SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEA  184 (302)
Q Consensus       129 ~~~~~~~~~~v~~----------------------~~-~~~~~~-~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~  184 (302)
                      .....++.+.+.+                      .+ .+.... ..++.+..||+||+||++||+||+.+|++||||| 
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE-  427 (490)
T PRK10938        349 YRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDE-  427 (490)
T ss_pred             cccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC-
Confidence            0000111111100                      00 011111 2345678899999999999999999999999999 


Q ss_pred             CCCCcchHHHH-HHHHHHHHHcCCC-cEEEEEEecCHHHHHh-hccCCCeeeecCcC
Q psy2071         185 HERTLATDILM-GVLKEVIKQRADL-KLVIMSATLDAGKFQQ-YFDNAPLMNVPGRT  238 (302)
Q Consensus       185 ~~p~~~lD~~~-~~l~~ll~~~~~~-~~~ii~~thd~~~~~~-~~d~~~~l~i~g~~  238 (302)
                        ||+++|+.. ..+.+++....+. +.|||++|||++++.. +||++.+|+ .|+.
T Consensus       428 --Pt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~-~G~i  481 (490)
T PRK10938        428 --PLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVP-DGDI  481 (490)
T ss_pred             --ccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEec-CCce
Confidence              999999887 7788888876544 4579999999999987 589999998 6753

>PRK13409 putative ATPase RIL; Provisional

Probab=99.94  E-value=3.9e-28  Score=236.84  Aligned_cols=163  Identities=16%  Similarity=0.149  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEE-----------EeecCchhhhH---------HHHHH
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKA-----------VACTQPRRVAA---------MSVAQ  125 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~-----------i~~~~~~~~~~---------~~~~~  125 (302)
                      .+.+++ .+++|++++|+||||||||||+++|+|+++|+.|++.           +.|.+......         ....+
T Consensus        89 ~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q  167 (590)
T PRK13409         89 KLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQ  167 (590)
T ss_pred             eEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeeccc
Confidence            467887 7999999999999999999999999999999999987           66655322100         00011


Q ss_pred             Hhhhhh---ccccccceeee---------e-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071         126 RVSEEM---DCQLGQEVGYS---------I-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD  192 (302)
Q Consensus       126 ~~~~~~---~~~~~~~v~~~---------~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD  192 (302)
                      ++.+.+   ..++.+++.+.         + .+......++.+..|||||+||++||++|+.+|++|||||   ||+++|
T Consensus       168 ~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDE---Pts~LD  244 (590)
T PRK13409        168 YVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDE---PTSYLD  244 (590)
T ss_pred             chhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC---CCCCCC
Confidence            111111   11232222110         0 0111112456778899999999999999999999999999   999999


Q ss_pred             HHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         193 ILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       193 ~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      +.. ..+.++++.+.+ +.++|++|||++.+..+||++.+|+
T Consensus       245 ~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~  285 (590)
T PRK13409        245 IRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAY  285 (590)
T ss_pred             HHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            887 778888887777 8999999999999999999999886

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.94  E-value=9.4e-28  Score=235.62  Aligned_cols=167  Identities=17%  Similarity=0.247  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~  138 (302)
                      .+++++++.|++|+.++|+|+||||||||+++|+|+++|++|++.++|.+..........+.+   .+   .+..++.+|
T Consensus       357 ~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N  436 (582)
T PRK11176        357 PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANN  436 (582)
T ss_pred             ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHH
Confidence            368999999999999999999999999999999999999999999999875543322222222   22   234566677


Q ss_pred             eeeeee--ecC------------------C-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         139 VGYSIR--FED------------------C-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       139 v~~~~~--~~~------------------~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      +.+...  ...                  . ...++.+    ..|||||+||++|||||+.+|++|||||   ||+++|+
T Consensus       437 i~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDE---ptsaLD~  513 (582)
T PRK11176        437 IAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDE---ATSALDT  513 (582)
T ss_pred             HhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEEC---ccccCCH
Confidence            665321  000                  0 0112322    4499999999999999999999999999   9999998


Q ss_pred             HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      .. ..+.+.+....+ +.|+|++||+.+.+ +.||+|++|+ .|+
T Consensus       514 ~t~~~i~~~l~~~~~-~~tvI~VtHr~~~~-~~~D~Ii~l~-~g~  555 (582)
T PRK11176        514 ESERAIQAALDELQK-NRTSLVIAHRLSTI-EKADEILVVE-DGE  555 (582)
T ss_pred             HHHHHHHHHHHHHhC-CCEEEEEecchHHH-HhCCEEEEEE-CCE
Confidence            88 667777766533 58999999999776 4699999998 665

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.94  E-value=2.5e-28  Score=259.72  Aligned_cols=168  Identities=14%  Similarity=0.162  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-h-HHH----HHHHhhhhhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-A-AMS----VAQRVSEEMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-~-~~~----~~~~~~~~~~~~~~~~  138 (302)
                      .+++++++.+++||+++|+|+||||||||+++|+|+++|++|++.+.|.+.... . ...    ..+........++.++
T Consensus       944 ~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~ 1023 (2272)
T TIGR01257       944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEH 1023 (2272)
T ss_pred             eEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHH
Confidence            367999999999999999999999999999999999999999999998764321 0 000    0111111123455555


Q ss_pred             eeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH
Q psy2071         139 VGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL  198 (302)
Q Consensus       139 v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l  198 (302)
                      +.+..+...                   ....++.+..||||||||++||+||+.+|++|||||   ||+++|+.. ..+
T Consensus      1024 L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDE---PTSGLDp~sr~~l 1100 (2272)
T TIGR01257      1024 ILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDE---PTSGVDPYSRRSI 1100 (2272)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC---CCcCCCHHHHHHH
Confidence            543221111                   112345667899999999999999999999999999   999999888 788


Q ss_pred             HHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         199 KEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       199 ~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      .+++++.++ |.|||++||+++++..+||++++|+ .|+
T Consensus      1101 ~~lL~~l~~-g~TIIltTHdmdea~~laDrI~iL~-~Gk 1137 (2272)
T TIGR01257      1101 WDLLLKYRS-GRTIIMSTHHMDEADLLGDRIAIIS-QGR 1137 (2272)
T ss_pred             HHHHHHHhC-CCEEEEEECCHHHHHHhCCEEEEEE-CCE
Confidence            899887754 8899999999999999999999998 554

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.94  E-value=6.5e-28  Score=241.22  Aligned_cols=166  Identities=16%  Similarity=0.211  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~  138 (302)
                      .+++++++.|++|+.++|+||||||||||+++|+|+++|++|+|.++|.+..........+.+   .+   .+..++.+|
T Consensus       495 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreN  574 (711)
T TIGR00958       495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVREN  574 (711)
T ss_pred             ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHH
Confidence            368999999999999999999999999999999999999999999999876554433333222   22   235567777


Q ss_pred             eeeeeeecC-------------------C-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         139 VGYSIRFED-------------------C-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       139 v~~~~~~~~-------------------~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      +.|......                   . ...++.+    ..||||||||++||||++.+|+++||||   ||+++|..
T Consensus       575 I~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDE---pTSaLD~~  651 (711)
T TIGR00958       575 IAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDE---ATSALDAE  651 (711)
T ss_pred             HhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEc---cccccCHH
Confidence            766532100                   0 0112322    3599999999999999999999999999   99999987


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      . ..+.+ ...  ..+.|+|++||+.+.+. .||+|++|+ .|+.
T Consensus       652 te~~i~~-~~~--~~~~TvIiItHrl~~i~-~aD~IivL~-~G~i  691 (711)
T TIGR00958       652 CEQLLQE-SRS--RASRTVLLIAHRLSTVE-RADQILVLK-KGSV  691 (711)
T ss_pred             HHHHHHH-hhc--cCCCeEEEEeccHHHHH-hCCEEEEEE-CCEE
Confidence            7 55665 222  24679999999998775 599999998 6653

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=8.4e-28  Score=222.72  Aligned_cols=179  Identities=17%  Similarity=0.226  Sum_probs=132.5

Q ss_pred             HHHHhhcCCChhH--HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH------H
Q psy2071          53 ELHRKRITLPVFE--YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV------A  124 (302)
Q Consensus        53 ~l~~~r~~lp~~~--~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~------~  124 (302)
                      ++.+..+++|.-+  ++++|++.+++||.++|+|++||||||++.+++|.+.|++|++.++|.+.........      .
T Consensus       338 ~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl  417 (573)
T COG4987         338 ELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVL  417 (573)
T ss_pred             eeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhh
Confidence            3455666677655  7999999999999999999999999999999999999999999999987654433211      1


Q ss_pred             HHhhhhhccccccceeeeeee-------------------cCC-CCcccc----ccccCHHHHHHHhccccCCCCCcEEE
Q psy2071         125 QRVSEEMDCQLGQEVGYSIRF-------------------EDC-SSPKTV----LKYMTDGMLLREGMSDPMLENYQVIL  180 (302)
Q Consensus       125 ~~~~~~~~~~~~~~v~~~~~~-------------------~~~-~~~~~~----~~~lS~G~~qr~~la~al~~~p~lli  180 (302)
                      .+-...+..++.+|+...-..                   ... ...++.    -..|||||+||++|||+|+++.+++|
T Consensus       418 ~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~l  497 (573)
T COG4987         418 TQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWL  497 (573)
T ss_pred             ccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEE
Confidence            111222333444444322111                   000 011222    23499999999999999999999999


Q ss_pred             EcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         181 LDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       181 LDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      |||   ||.++|+.. ..+.+++....+ ++|++++||++-.++ .||+|++|+ .|+
T Consensus       498 LDE---PTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~le-~~drIivl~-~Gk  549 (573)
T COG4987         498 LDE---PTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRGLE-RMDRIIVLD-NGK  549 (573)
T ss_pred             ecC---CcccCChhhHHHHHHHHHHHhc-CCeEEEEecccccHh-hcCEEEEEE-CCe
Confidence            999   999999988 556666655433 789999999998875 789999999 664

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.94  E-value=6e-28  Score=215.70  Aligned_cols=160  Identities=14%  Similarity=0.162  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeee--
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSI--  143 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--  143 (302)
                      +++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.    ++.......+   ...++.+++.+..  
T Consensus        52 vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~----i~yv~q~~~l---~~~tv~enl~~~~~~  124 (282)
T cd03291          52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR----ISFSSQFSWI---MPGTIKENIIFGVSY  124 (282)
T ss_pred             ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE----EEEEeCcccc---cccCHHHHhhccccc
Confidence            678999999999999999999999999999999999999999887652    1100000000   0001111111100  


Q ss_pred             ------------eec----CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH-
Q psy2071         144 ------------RFE----DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE-  200 (302)
Q Consensus       144 ------------~~~----~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~-  200 (302)
                                  ...    ..     .........||+||+||++||++|+.+|+++||||   |++++|+.. ..+.+ 
T Consensus       125 ~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDE---Pt~gLD~~~~~~l~~~  201 (282)
T cd03291         125 DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS---PFGYLDVFTEKEIFES  201 (282)
T ss_pred             CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC---CCccCCHHHHHHHHHH
Confidence                        000    00     01112346899999999999999999999999999   999999887 55655 


Q ss_pred             HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++..... +.+||++||+.+.+ ..||++++|+ .|+.
T Consensus       202 ll~~~~~-~~tIiiisH~~~~~-~~~d~i~~l~-~G~i  236 (282)
T cd03291         202 CVCKLMA-NKTRILVTSKMEHL-KKADKILILH-EGSS  236 (282)
T ss_pred             HHHHhhC-CCEEEEEeCChHHH-HhCCEEEEEE-CCEE
Confidence            4444433 67999999999987 4799999998 6664

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=6.7e-28  Score=237.94  Aligned_cols=169  Identities=18%  Similarity=0.153  Sum_probs=122.1

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH------------HHHhh
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV------------AQRVS  128 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~------------~~~~~  128 (302)
                      ++...+++++++.|.+|++++|+||||||||||+++|+|+++|++|.+.+.+..  ++++..+            ...+.
T Consensus       322 y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~--~igy~~Q~~~~~l~~~~~~~~~~~  399 (638)
T PRK10636        322 YGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGI--KLGYFAQHQLEFLRADESPLQHLA  399 (638)
T ss_pred             eCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCE--EEEEecCcchhhCCccchHHHHHH
Confidence            333346899999999999999999999999999999999999999998875210  1111100            00000


Q ss_pred             hhhccccccceeeee-eecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc
Q psy2071         129 EEMDCQLGQEVGYSI-RFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR  205 (302)
Q Consensus       129 ~~~~~~~~~~v~~~~-~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~  205 (302)
                      ..........+...+ .+... ...++.+..|||||+||++||++|+.+|++|||||   ||+++|+.. ..+.+++...
T Consensus       400 ~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE---Pt~~LD~~~~~~l~~~L~~~  476 (638)
T PRK10636        400 RLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE---PTNHLDLDMRQALTEALIDF  476 (638)
T ss_pred             HhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CCCCCCHHHHHHHHHHHHHc
Confidence            000000000011001 11111 12356788999999999999999999999999999   999999887 7888888876


Q ss_pred             CCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         206 ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       206 ~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                        .+ |||++|||.+++..+||++++|+ .|..
T Consensus       477 --~g-tvi~vSHd~~~~~~~~d~i~~l~-~G~i  505 (638)
T PRK10636        477 --EG-ALVVVSHDRHLLRSTTDDLYLVH-DGKV  505 (638)
T ss_pred             --CC-eEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence              24 89999999999999999999998 5553

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.94  E-value=9.7e-28  Score=239.82  Aligned_cols=167  Identities=16%  Similarity=0.238  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh------hhhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS------EEMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v  139 (302)
                      +++++++.|++|+.++|+|+||||||||+++|+|++.|++|.+.++|.+..........+.++      ..+..++.+|+
T Consensus       480 vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi  559 (694)
T TIGR03375       480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNI  559 (694)
T ss_pred             ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHH
Confidence            689999999999999999999999999999999999999999999998765544333332221      12334566666


Q ss_pred             eeeeeec-------------------CC-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFE-------------------DC-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~-------------------~~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+.-...                   .. ...++.+    ..|||||+||++||||++.+|+++||||   ||+++|+..
T Consensus       560 ~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE---~Ts~LD~~t  636 (694)
T TIGR03375       560 ALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDE---PTSAMDNRS  636 (694)
T ss_pred             hCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCCCCHHH
Confidence            5432100                   00 0112222    4599999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+.+....+ +.|++++||+++.+ ..||++++|+ .|+.
T Consensus       637 e~~i~~~l~~~~~-~~T~iiItHrl~~~-~~~D~iivl~-~G~i  677 (694)
T TIGR03375       637 EERFKDRLKRWLA-GKTLVLVTHRTSLL-DLVDRIIVMD-NGRI  677 (694)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEecCHHHH-HhCCEEEEEe-CCEE
Confidence             667777766543 67899999999876 5799999998 6653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.94  E-value=8.2e-28  Score=237.60  Aligned_cols=170  Identities=19%  Similarity=0.191  Sum_probs=122.1

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC--------chhhhHHHHHHHh-----
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ--------PRRVAAMSVAQRV-----  127 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~--------~~~~~~~~~~~~~-----  127 (302)
                      ++...+++++++.|++|++++|+||||||||||+++|+|+++|++|.|.+.+..        +.......+.+.+     
T Consensus        13 ~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~   92 (635)
T PRK11147         13 FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIE   92 (635)
T ss_pred             eCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhH
Confidence            333346789999999999999999999999999999999999999999876521        0000000000000     


Q ss_pred             ------------hhhhcc-ccc----------------------cceeeeeeecCCCCccccccccCHHHHHHHhccccC
Q psy2071         128 ------------SEEMDC-QLG----------------------QEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPM  172 (302)
Q Consensus       128 ------------~~~~~~-~~~----------------------~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al  172 (302)
                                  ...+.. ...                      ..+...+...... .++.+..|||||+||++||++|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~LSgGekqRv~LAraL  171 (635)
T PRK11147         93 EQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-PDAALSSLSGGWLRKAALGRAL  171 (635)
T ss_pred             HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC-CCCchhhcCHHHHHHHHHHHHH
Confidence                        000000 000                      0000000001111 2567789999999999999999


Q ss_pred             CCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         173 LENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       173 ~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +.+|++|||||   ||+++|+.. ..+.+++....   .+||++|||.+++..+||++++|+ .|+.
T Consensus       172 ~~~P~lLLLDE---Pt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~~l~~~~d~i~~L~-~G~i  231 (635)
T PRK11147        172 VSNPDVLLLDE---PTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRSFIRNMATRIVDLD-RGKL  231 (635)
T ss_pred             hcCCCEEEEcC---CCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHhcCeEEEEE-CCEE
Confidence            99999999999   999999887 78888887763   489999999999999999999998 6654

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.94  E-value=1.7e-27  Score=234.18  Aligned_cols=167  Identities=14%  Similarity=0.149  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh---h---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS---E---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~v  139 (302)
                      +++++++.|++|+.++|+|+||||||||+++++|++.|++|.+.++|.+..........+.++   +   .++.++.+|+
T Consensus       356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI  435 (592)
T PRK10790        356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANV  435 (592)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHH
Confidence            689999999999999999999999999999999999999999999998755433332222221   1   2334555665


Q ss_pred             eeeeeecC------------------C-CCcccc----ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         140 GYSIRFED------------------C-SSPKTV----LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       140 ~~~~~~~~------------------~-~~~~~~----~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+.-....                  . ...++.    -..|||||+||++|||||+.+|++|||||   ||+++|+.. 
T Consensus       436 ~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDE---pts~LD~~t~  512 (592)
T PRK10790        436 TLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDE---ATANIDSGTE  512 (592)
T ss_pred             HhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeC---CcccCCHHHH
Confidence            54321000                  0 011222    24599999999999999999999999999   999999888 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ..+.+.+..... +.|+|++||+.+.+. .||++++|+ .|+.
T Consensus       513 ~~i~~~l~~~~~-~~tvIivtHr~~~l~-~~D~ii~l~-~G~i  552 (592)
T PRK10790        513 QAIQQALAAVRE-HTTLVVIAHRLSTIV-EADTILVLH-RGQA  552 (592)
T ss_pred             HHHHHHHHHHhC-CCEEEEEecchHHHH-hCCEEEEEE-CCEE
Confidence            677777776544 578889999998776 599999998 6654

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.94  E-value=2.4e-27  Score=232.00  Aligned_cols=168  Identities=18%  Similarity=0.235  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hh---hhhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VS---EEMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~  138 (302)
                      .+++++++.+++|++++|+||||||||||+++++|+++|++|++.++|.+.+..........   +.   ..+..++.+|
T Consensus       354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N  433 (574)
T PRK11160        354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDN  433 (574)
T ss_pred             cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHH
Confidence            36899999999999999999999999999999999999999999999987554332222221   11   2234466666


Q ss_pred             eeeeeee---------------c----CCCCccc----cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         139 VGYSIRF---------------E----DCSSPKT----VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       139 v~~~~~~---------------~----~~~~~~~----~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+....               +    .....++    ....|||||+||++||||++.+|++|||||   ||+++|...
T Consensus       434 i~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE---~ts~lD~~t  510 (574)
T PRK11160        434 LLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDE---PTEGLDAET  510 (574)
T ss_pred             hhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHH
Confidence            6553210               0    0001122    234599999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+.+....+ +.|++++||+.+.+. .||++++|+ .|+.
T Consensus       511 ~~~i~~~l~~~~~-~~tviiitHr~~~~~-~~d~i~~l~-~G~i  551 (574)
T PRK11160        511 ERQILELLAEHAQ-NKTVLMITHRLTGLE-QFDRICVMD-NGQI  551 (574)
T ss_pred             HHHHHHHHHHHcC-CCEEEEEecChhHHH-hCCEEEEEe-CCeE
Confidence             777777776543 679999999999876 599999998 6653

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.94  E-value=1.1e-27  Score=235.41  Aligned_cols=168  Identities=17%  Similarity=0.216  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~  138 (302)
                      .+++++++.+++|+.++|+|+||||||||+++++|+++|++|.+.++|.+..........+.+   .+   .+..++.+|
T Consensus       349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~N  428 (588)
T PRK13657        349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDN  428 (588)
T ss_pred             ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHH
Confidence            368999999999999999999999999999999999999999999999876554433333222   11   234466666


Q ss_pred             eeeeeee-c------------------CC-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         139 VGYSIRF-E------------------DC-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       139 v~~~~~~-~------------------~~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      +.+.-.. .                  .. ...++.+    ..|||||+||++|||||+.+|+++||||   ||+++|+.
T Consensus       429 i~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDE---pts~LD~~  505 (588)
T PRK13657        429 IRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDE---ATSALDVE  505 (588)
T ss_pred             HhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC---CccCCCHH
Confidence            6553110 0                  00 0112222    3599999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      . ..+.+.+..... +.|++++||+.+.+ +.||++++|+ .|+.
T Consensus       506 t~~~i~~~l~~~~~-~~tvIiitHr~~~~-~~~D~ii~l~-~G~i  547 (588)
T PRK13657        506 TEAKVKAALDELMK-GRTTFIIAHRLSTV-RNADRILVFD-NGRV  547 (588)
T ss_pred             HHHHHHHHHHHHhc-CCEEEEEEecHHHH-HhCCEEEEEE-CCEE
Confidence            8 667777765533 68999999999876 5799999998 6653

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=8.6e-27  Score=187.57  Aligned_cols=168  Identities=23%  Similarity=0.322  Sum_probs=124.2

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeec--CchhhhHHHHHHH----------hhh-----
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT--QPRRVAAMSVAQR----------VSE-----  129 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~--~~~~~~~~~~~~~----------~~~-----  129 (302)
                      -++++|.+.+||+.+|+|++|||||||+++|++-+.|+.|.+.+...  +++.+..+.-+.+          +-+     
T Consensus        22 c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DG  101 (258)
T COG4107          22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDG  101 (258)
T ss_pred             ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCcccc
Confidence            46889999999999999999999999999999999999999877542  2322222211111          111     


Q ss_pred             -hhccccccceeeee-----eecC----------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071         130 -EMDCQLGQEVGYSI-----RFED----------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER  187 (302)
Q Consensus       130 -~~~~~~~~~v~~~~-----~~~~----------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p  187 (302)
                       -+..+.+.|+|.-+     +...                ....+.....+||||+||+.|||.|+..|+++++||   |
T Consensus       102 LRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDE---P  178 (258)
T COG4107         102 LRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDE---P  178 (258)
T ss_pred             ceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecC---C
Confidence             11233344444221     1000                001233456799999999999999999999999999   9


Q ss_pred             CcchHHHH-HHHHHHHHH-cCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         188 TLATDILM-GVLKEVIKQ-RADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       188 ~~~lD~~~-~~l~~ll~~-~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |.++|... ..+.++++. ..+.+..++++|||+..+.-++++..+|+ .|+.
T Consensus       179 TGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk-~g~v  230 (258)
T COG4107         179 TGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMK-QGQV  230 (258)
T ss_pred             CCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeec-CCCE
Confidence            99999776 667777764 35779999999999999999999999998 5554

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.93  E-value=2.9e-27  Score=231.83  Aligned_cols=167  Identities=19%  Similarity=0.180  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~v  139 (302)
                      +++++++.+++|+.++|+||||||||||+++|+|+++|++|++.++|.+..........+.   +.+   .+..++.+|+
T Consensus       350 ~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni  429 (585)
T TIGR01192       350 GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENI  429 (585)
T ss_pred             cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHH
Confidence            5899999999999999999999999999999999999999999999876543322211111   111   2234555555


Q ss_pred             eeeeee-------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRF-------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~-------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+....                   ...     .........|||||+||++|||||+.+|++|||||   ||+++|...
T Consensus       430 ~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDE---pts~LD~~~  506 (585)
T TIGR01192       430 RLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDE---ATSALDVET  506 (585)
T ss_pred             hcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC---CccCCCHHH
Confidence            443110                   000     00112234599999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+.+....+ +.|+|++||+.+.+. .||++++|+ .|+.
T Consensus       507 ~~~i~~~l~~~~~-~~tvI~isH~~~~~~-~~d~i~~l~-~G~i  547 (585)
T TIGR01192       507 EARVKNAIDALRK-NRTTFIIAHRLSTVR-NADLVLFLD-QGRL  547 (585)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEEcChHHHH-cCCEEEEEE-CCEE
Confidence             777777776543 789999999999885 599999998 6653

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.93  E-value=3.9e-27  Score=229.41  Aligned_cols=169  Identities=14%  Similarity=0.153  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh---hhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE---EMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~  138 (302)
                      .+++++++.+++|+.++|+|+||||||||+++++|+++|++|.+.++|.+..........+.   +.+   .+..++.+|
T Consensus       332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~N  411 (544)
T TIGR01842       332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAEN  411 (544)
T ss_pred             cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHH
Confidence            36899999999999999999999999999999999999999999999876543322111111   111   123355555


Q ss_pred             eeeeee-e--c----------------CCC-Cccc----cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         139 VGYSIR-F--E----------------DCS-SPKT----VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       139 v~~~~~-~--~----------------~~~-~~~~----~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      +.+.-. .  +                ... ..++    ....|||||+||++||||++.+|++|||||   ||+++|..
T Consensus       412 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDE---pts~LD~~  488 (544)
T TIGR01842       412 IARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDE---PNSNLDEE  488 (544)
T ss_pred             HhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeC---CccccCHH
Confidence            542211 0  0                000 0122    235699999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      . ..+.+.+......+.|++++||+.+.+ ..||++++|+ .|+.
T Consensus       489 ~~~~i~~~l~~~~~~~~tvi~ith~~~~~-~~~d~i~~l~-~G~i  531 (544)
T TIGR01842       489 GEQALANAIKALKARGITVVVITHRPSLL-GCVDKILVLQ-DGRI  531 (544)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEE-CCEE
Confidence            7 677777776544578999999999865 5799999998 6653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.93  E-value=2.3e-27  Score=237.62  Aligned_cols=167  Identities=14%  Similarity=0.159  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~  138 (302)
                      .+++++++.|++|+.++|+|+||||||||+++|+|++.|++|++.++|.+..........+.+   .+   .+..++.+|
T Consensus       488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN  567 (708)
T TIGR01193       488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILEN  567 (708)
T ss_pred             cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHH
Confidence            368999999999999999999999999999999999999999999999876554433333222   12   234456666


Q ss_pred             eeeeeeecC--------------------C-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         139 VGYSIRFED--------------------C-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       139 v~~~~~~~~--------------------~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      +.+....+.                    . ...++.+    ..|||||+||++||||++.+|++|||||   ||+++|.
T Consensus       568 i~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE---~Ts~LD~  644 (708)
T TIGR01193       568 LLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDE---STSNLDT  644 (708)
T ss_pred             HhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC---ccccCCH
Confidence            655411000                    0 0112322    4599999999999999999999999999   9999998


Q ss_pred             HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .. ..+.+.+...  .+.|+|++||+.+.+ ..||++++|+ .|+.
T Consensus       645 ~te~~i~~~L~~~--~~~T~IiitHr~~~~-~~~D~i~~l~-~G~i  686 (708)
T TIGR01193       645 ITEKKIVNNLLNL--QDKTIIFVAHRLSVA-KQSDKIIVLD-HGKI  686 (708)
T ss_pred             HHHHHHHHHHHHh--cCCEEEEEecchHHH-HcCCEEEEEE-CCEE
Confidence            87 6677777654  367999999999876 5799999998 6653

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.93  E-value=1.8e-27  Score=232.83  Aligned_cols=176  Identities=16%  Similarity=0.246  Sum_probs=137.7

Q ss_pred             HhhcCCC-hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh------
Q psy2071          56 RKRITLP-VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS------  128 (302)
Q Consensus        56 ~~r~~lp-~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~------  128 (302)
                      +....+| ...+++++++.+++|+.++|+|||||||||+++.+.+++.|++|+|.++|.+.+.+........++      
T Consensus       333 ~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~  412 (567)
T COG1132         333 NVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDP  412 (567)
T ss_pred             EEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccc
Confidence            3344555 456789999999999999999999999999999999999999999999998876665554444443      


Q ss_pred             hhhccccccceeeeeeec-------------------CC-CCcccccc----ccCHHHHHHHhccccCCCCCcEEEEcCC
Q psy2071         129 EEMDCQLGQEVGYSIRFE-------------------DC-SSPKTVLK----YMTDGMLLREGMSDPMLENYQVILLDEA  184 (302)
Q Consensus       129 ~~~~~~~~~~v~~~~~~~-------------------~~-~~~~~~~~----~lS~G~~qr~~la~al~~~p~lliLDE~  184 (302)
                      ..+..++.+|+.+.....                   .. ...++.+.    .||||||||++||||++.+|++||||| 
T Consensus       413 ~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDE-  491 (567)
T COG1132         413 LLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDE-  491 (567)
T ss_pred             eeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEec-
Confidence            123467777777664210                   00 01244443    599999999999999999999999999 


Q ss_pred             CCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         185 HERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       185 ~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                        +|+++|... ..+.+.+....+ +.|+++++|.+..+.. ||++.+|+ .|+
T Consensus       492 --aTSalD~~tE~~I~~~l~~l~~-~rT~iiIaHRlsti~~-aD~IiVl~-~G~  540 (567)
T COG1132         492 --ATSALDTETEALIQDALKKLLK-GRTTLIIAHRLSTIKN-ADRIIVLD-NGR  540 (567)
T ss_pred             --cccccCHHhHHHHHHHHHHHhc-CCEEEEEeccHhHHHh-CCEEEEEE-CCE
Confidence              999999888 677777765443 3477779999998887 99999999 665

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.93  E-value=1.6e-27  Score=232.29  Aligned_cols=164  Identities=13%  Similarity=0.114  Sum_probs=121.0

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccccccee
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVG  140 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  140 (302)
                      ++...+++++++.|++|++++|+|+||||||||+++|+|+++|++|.+.+.+ .. +++...... .......++.+++.
T Consensus       334 ~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~-~i~~v~q~~-~~~~~~~tv~e~l~  410 (556)
T PRK11819        334 FGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV-KLAYVDQSR-DALDPNKTVWEEIS  410 (556)
T ss_pred             ECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce-EEEEEeCch-hhcCCCCCHHHHHH
Confidence            3333468999999999999999999999999999999999999999998732 11 111111110 00011122222221


Q ss_pred             eee----------------eecCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071         141 YSI----------------RFEDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV  201 (302)
Q Consensus       141 ~~~----------------~~~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l  201 (302)
                      +..                ......  ..++.+..|||||+||++||++++.+|++|||||   ||+++|+.. ..+.++
T Consensus       411 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE---Pt~~LD~~~~~~l~~~  487 (556)
T PRK11819        411 GGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDE---PTNDLDVETLRALEEA  487 (556)
T ss_pred             hhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CCCCCCHHHHHHHHHH
Confidence            110                001111  1356678899999999999999999999999999   999999888 788888


Q ss_pred             HHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         202 IKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       202 l~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      +....  + ++|++|||++++..+||++++|+
T Consensus       488 l~~~~--~-tvi~vtHd~~~~~~~~d~i~~l~  516 (556)
T PRK11819        488 LLEFP--G-CAVVISHDRWFLDRIATHILAFE  516 (556)
T ss_pred             HHhCC--C-eEEEEECCHHHHHHhCCEEEEEE
Confidence            88763  4 78889999999999999999987

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.93  E-value=2.2e-27  Score=230.53  Aligned_cols=162  Identities=16%  Similarity=0.152  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v  139 (302)
                      .++++++.|++|+.++|+|+||||||||+++|+|+++|++|++.++|.+..........+.+   .+   .+..++.+|+
T Consensus       337 il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni  416 (529)
T TIGR02857       337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENI  416 (529)
T ss_pred             cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHH
Confidence            68999999999999999999999999999999999999999999999876544332222222   11   2344666666


Q ss_pred             eeeeeecC-------------------C-CCcccc----ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFED-------------------C-SSPKTV----LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~~-------------------~-~~~~~~----~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+......                   . ...++.    -..|||||+||+++|||++.+|+++||||   ||+++|+..
T Consensus       417 ~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE---~ts~lD~~~  493 (529)
T TIGR02857       417 RLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDE---PTAHLDAET  493 (529)
T ss_pred             hccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeC---cccccCHHH
Confidence            54321000                   0 001222    24599999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCee
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLM  232 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l  232 (302)
                       ..+.+.+.... .+.|++++||+++.+ +.||++++|
T Consensus       494 ~~~i~~~l~~~~-~~~t~i~itH~~~~~-~~~d~i~~l  529 (529)
T TIGR02857       494 EALVTEALRALA-QGRTVLLVTHRLALA-ERADRIVVL  529 (529)
T ss_pred             HHHHHHHHHHhc-CCCEEEEEecCHHHH-HhCCEEEeC
Confidence             66777776654 368999999999887 569998764

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.93  E-value=1.9e-27  Score=231.75  Aligned_cols=161  Identities=14%  Similarity=0.126  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeee-
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYS-  142 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-  142 (302)
                      ..+++++++.|++|++++|+||||||||||+++|+|+++|++|.+.+.+ .. +++...+... ......++.+++.+. 
T Consensus       335 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~-~i~~v~q~~~-~~~~~~tv~e~l~~~~  411 (552)
T TIGR03719       335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV-KLAYVDQSRD-ALDPNKTVWEEISGGL  411 (552)
T ss_pred             eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce-EEEEEeCCcc-ccCCCCcHHHHHHhhc
Confidence            3468899999999999999999999999999999999999999988732 11 1111111000 000111222221111 


Q ss_pred             ---------------eeecCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHH
Q psy2071         143 ---------------IRFEDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQ  204 (302)
Q Consensus       143 ---------------~~~~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~  204 (302)
                                     +......  ..++.+..|||||+||++||++|+.+|++|||||   ||+++|+.. ..+.+++..
T Consensus       412 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDE---Pt~~LD~~~~~~l~~~l~~  488 (552)
T TIGR03719       412 DIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDE---PTNDLDVETLRALEEALLE  488 (552)
T ss_pred             cccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeC---CCCCCCHHHHHHHHHHHHH
Confidence                           0111111  1356678899999999999999999999999999   999999887 788888887


Q ss_pred             cCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         205 RADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       205 ~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      ..  + +||++|||++++..+||++++|+
T Consensus       489 ~~--~-~viivsHd~~~~~~~~d~i~~l~  514 (552)
T TIGR03719       489 FA--G-CAVVISHDRWFLDRIATHILAFE  514 (552)
T ss_pred             CC--C-eEEEEeCCHHHHHHhCCEEEEEE
Confidence            63  3 78899999999999999999997

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.93  E-value=4.2e-27  Score=230.16  Aligned_cols=167  Identities=16%  Similarity=0.133  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~v  139 (302)
                      +++++++.+++|++++|+||||||||||+++|+|+++|++|++.++|.+............   +.+   .+..++.+|+
T Consensus       330 ~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni  409 (569)
T PRK10789        330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNI  409 (569)
T ss_pred             cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHH
Confidence            6899999999999999999999999999999999999999999999876543322221111   111   1233555555


Q ss_pred             eeeeeec------------C-------C-CCccc----cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFE------------D-------C-SSPKT----VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~------------~-------~-~~~~~----~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+.....            .       . ...++    ....|||||+||++||||++.+|+++||||   ||+++|+..
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDE---pts~LD~~~  486 (569)
T PRK10789        410 ALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDD---ALSAVDGRT  486 (569)
T ss_pred             hcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC---ccccCCHHH
Confidence            4431100            0       0 00122    224599999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+.+.... .+.|++++||+.+.+. .||++++|+ .|+.
T Consensus       487 ~~~i~~~l~~~~-~~~tii~itH~~~~~~-~~d~i~~l~-~G~i  527 (569)
T PRK10789        487 EHQILHNLRQWG-EGRTVIISAHRLSALT-EASEILVMQ-HGHI  527 (569)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEecchhHHH-cCCEEEEEe-CCEE
Confidence             67777777654 3689999999998775 699999998 5653

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.93  E-value=7.5e-27  Score=233.40  Aligned_cols=167  Identities=13%  Similarity=0.147  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v  139 (302)
                      +++++++.|++|+.++|+|+||||||||+++|+|++.|++|++.++|.+.+........+.+   .+   .+..++.+|+
T Consensus       472 il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi  551 (694)
T TIGR01846       472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNI  551 (694)
T ss_pred             ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHH
Confidence            68999999999999999999999999999999999999999999999876544333222222   11   2234555555


Q ss_pred             eeeeeec-------------------CC-CCcccc----ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFE-------------------DC-SSPKTV----LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~-------------------~~-~~~~~~----~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+.-...                   .. ...++.    ...|||||+||++|||||+.+|++|||||   ||+++|+..
T Consensus       552 ~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDE---pts~LD~~~  628 (694)
T TIGR01846       552 ALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDE---ATSALDYES  628 (694)
T ss_pred             hcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC---CCcCCCHHH
Confidence            4421000                   00 011222    34699999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+.+.... .+.|+|++||+.+.+. .||++++|+ .|+.
T Consensus       629 ~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~ii~l~-~G~i  669 (694)
T TIGR01846       629 EALIMRNMREIC-RGRTVIIIAHRLSTVR-ACDRIIVLE-KGQI  669 (694)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEeCChHHHH-hCCEEEEEe-CCEE
Confidence             67777777653 3689999999999886 499999998 6654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.93  E-value=3.4e-27  Score=233.18  Aligned_cols=169  Identities=17%  Similarity=0.190  Sum_probs=122.5

Q ss_pred             CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccce
Q psy2071          60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEV  139 (302)
Q Consensus        60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  139 (302)
                      .++...+++++++.|.+|++++|+||||||||||+++|+|+++|++|.+.+ |... .++...+.. .......++.+++
T Consensus       328 ~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~-~i~y~~q~~-~~l~~~~tv~e~l  404 (635)
T PRK11147        328 QIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-EVAYFDQHR-AELDPEKTVMDNL  404 (635)
T ss_pred             EECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-EEEEEeCcc-cccCCCCCHHHHH
Confidence            343334679999999999999999999999999999999999999999987 4221 111111100 0001111222222


Q ss_pred             eee----------------e-eecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH
Q psy2071         140 GYS----------------I-RFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE  200 (302)
Q Consensus       140 ~~~----------------~-~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~  200 (302)
                      .+.                + .+... ...++.+..|||||+||++||++|+.+|++|||||   ||+++|+.. ..+.+
T Consensus       405 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDE---Pt~~LD~~~~~~l~~  481 (635)
T PRK11147        405 AEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDE---PTNDLDVETLELLEE  481 (635)
T ss_pred             HhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CCCCCCHHHHHHHHH
Confidence            111                0 11110 12356678899999999999999999999999999   999999877 77888


Q ss_pred             HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ++...   +.|||++|||.+++..+||++++++-.|.
T Consensus       482 ~l~~~---~~tvi~vSHd~~~~~~~~d~i~~l~~~g~  515 (635)
T PRK11147        482 LLDSY---QGTVLLVSHDRQFVDNTVTECWIFEGNGK  515 (635)
T ss_pred             HHHhC---CCeEEEEECCHHHHHHhcCEEEEEeCCCe
Confidence            88765   34899999999999999999999863454

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.93  E-value=4e-27  Score=228.65  Aligned_cols=149  Identities=17%  Similarity=0.155  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v  139 (302)
                      +++++++.|++|+.++|+||||||||||+++++|+++|++|++.++|.+.+.. .....+.+   .+   .+..++.+|+
T Consensus       350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI  428 (529)
T TIGR02868       350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNL  428 (529)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHH
Confidence            68999999999999999999999999999999999999999999999887665 44443333   22   2355777777


Q ss_pred             eeeeeecC--------------------CCCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFED--------------------CSSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~~--------------------~~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+.-....                    ....++.+    ..||||||||++||||++.+|+++||||   ||+++|...
T Consensus       429 ~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE---~TSaLD~~t  505 (529)
T TIGR02868       429 RLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDE---PTEHLDAGT  505 (529)
T ss_pred             hccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHH
Confidence            66421000                    00113333    3499999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCH
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDA  219 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~  219 (302)
                       ..+.+.+.... .+.|++++||++
T Consensus       506 e~~I~~~l~~~~-~~~TvIiItHrl  529 (529)
T TIGR02868       506 ESELLEDLLAAL-SGKTVVVITHHL  529 (529)
T ss_pred             HHHHHHHHHHhc-CCCEEEEEecCC
Confidence             66777766543 367999999973

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.93  E-value=4.4e-27  Score=230.41  Aligned_cols=166  Identities=17%  Similarity=0.235  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v  139 (302)
                      +++++++.+++|+.++|+|+||||||||+++|+|++.|++|.+.++|.+..........+.+   .+   .+..++.+|+
T Consensus       347 il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni  426 (571)
T TIGR02203       347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNI  426 (571)
T ss_pred             cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHH
Confidence            57899999999999999999999999999999999999999999999775544332222221   11   2344566665


Q ss_pred             eeeee--ec-----------C-------C-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         140 GYSIR--FE-----------D-------C-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       140 ~~~~~--~~-----------~-------~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      .+.-.  ..           .       . ...++.+    ..||||||||++||||++.+|+++||||   ||+++|..
T Consensus       427 ~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDE---pts~LD~~  503 (571)
T TIGR02203       427 AYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDE---ATSALDNE  503 (571)
T ss_pred             hcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---ccccCCHH
Confidence            54321  00           0       0 0112222    3599999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      . +.+.+.+....+ +.|+|++||+...+ ..||++++|+ .|+
T Consensus       504 ~~~~i~~~L~~~~~-~~tiIiitH~~~~~-~~~D~ii~l~-~g~  544 (571)
T TIGR02203       504 SERLVQAALERLMQ-GRTTLVIAHRLSTI-EKADRIVVMD-DGR  544 (571)
T ss_pred             HHHHHHHHHHHHhC-CCEEEEEehhhHHH-HhCCEEEEEe-CCE
Confidence            8 667777776533 57999999999665 6799999998 555

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.93  E-value=4.9e-27  Score=230.28  Aligned_cols=167  Identities=17%  Similarity=0.196  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---h---hhhhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---V---SEEMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~v  139 (302)
                      .++++++.+++||.++|+|+||||||||+++|+|+++|++|++.++|.+..........+.   +   ...+..++.+|+
T Consensus       355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni  434 (576)
T TIGR02204       355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENI  434 (576)
T ss_pred             cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHH
Confidence            6889999999999999999999999999999999999999999999976543322222111   1   112344556665


Q ss_pred             eeeeeec-------------------CC-CCccc----cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFE-------------------DC-SSPKT----VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~-------------------~~-~~~~~----~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+.-...                   .. ...++    .-..|||||+||+++|||++.+|+++||||   ||+++|+..
T Consensus       435 ~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDE---pts~lD~~~  511 (576)
T TIGR02204       435 RYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDE---ATSALDAES  511 (576)
T ss_pred             hcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeC---cccccCHHH
Confidence            5432100                   00 00122    234599999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       +.+.+.+..... +.|+|++||+.+.+ ..||++++++ .|+.
T Consensus       512 ~~~i~~~l~~~~~-~~t~IiitH~~~~~-~~~d~vi~l~-~g~~  552 (576)
T TIGR02204       512 EQLVQQALETLMK-GRTTLIIAHRLATV-LKADRIVVMD-QGRI  552 (576)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEecchHHH-HhCCEEEEEE-CCEE
Confidence             667777766533 68999999999776 5799999998 6653

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.93  E-value=7.5e-27  Score=191.05  Aligned_cols=175  Identities=15%  Similarity=0.197  Sum_probs=130.9

Q ss_pred             cCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee-cCchhhhHHHHHH--------Hhhh
Q psy2071          59 ITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC-TQPRRVAAMSVAQ--------RVSE  129 (302)
Q Consensus        59 ~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~-~~~~~~~~~~~~~--------~~~~  129 (302)
                      .++.-|.+++++++++.+||.-+||||||+||||++..|+|..+|+.|++.+.| .+..+.....+++        ....
T Consensus        13 VsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtV   92 (249)
T COG4674          13 VSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTV   92 (249)
T ss_pred             EEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCee
Confidence            456678889999999999999999999999999999999999999999999998 5543332222221        1111


Q ss_pred             hhccccccceeeeeeecCC---------------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEc
Q psy2071         130 EMDCQLGQEVGYSIRFEDC---------------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLD  182 (302)
Q Consensus       130 ~~~~~~~~~v~~~~~~~~~---------------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLD  182 (302)
                      +...++.+|+......+..                           ...+.....||.||||++.|..-++.+|++|+||
T Consensus        93 fe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlD  172 (249)
T COG4674          93 FENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLD  172 (249)
T ss_pred             hhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEec
Confidence            2233455554433211110                           0122334559999999999999999999999999


Q ss_pred             CCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         183 EAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       183 E~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |   |.+++-... ...-++++..+. +.+||++.|||+++.+++++|.+|+ .|..
T Consensus       173 E---PvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~Fvr~~A~~VTVlh-~G~V  224 (249)
T COG4674         173 E---PVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGFVREIADKVTVLH-EGSV  224 (249)
T ss_pred             C---ccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHHHHHhhheeEEEe-ccce
Confidence            9   999976444 667777776654 6788899999999999999999999 6654

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.93  E-value=2.9e-27  Score=212.16  Aligned_cols=182  Identities=18%  Similarity=0.231  Sum_probs=131.8

Q ss_pred             hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhhhH-------------HHHH
Q psy2071          63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRVAA-------------MSVA  124 (302)
Q Consensus        63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~~~-------------~~~~  124 (302)
                      ...+.++|++.|++||.++|+|++|||||-....++++++.     -+|++.+.|.+.-..+.             +++.
T Consensus        22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQE  101 (534)
T COG4172          22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQE  101 (534)
T ss_pred             ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecc
Confidence            45578999999999999999999999999999999998764     24789998876422211             1111


Q ss_pred             HHhhhhhccccccceeeeeeecCC-------------------C----CccccccccCHHHHHHHhccccCCCCCcEEEE
Q psy2071         125 QRVSEEMDCQLGQEVGYSIRFEDC-------------------S----SPKTVLKYMTDGMLLREGMSDPMLENYQVILL  181 (302)
Q Consensus       125 ~~~~~~~~~~~~~~v~~~~~~~~~-------------------~----~~~~~~~~lS~G~~qr~~la~al~~~p~lliL  181 (302)
                      ...+..+-.+++..+...++.+..                   .    ..+.....|||||+||++||.||+.+|++||.
T Consensus       102 PMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIA  181 (534)
T COG4172         102 PMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIA  181 (534)
T ss_pred             cccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEee
Confidence            111112222333333333322211                   0    11234566999999999999999999999999


Q ss_pred             cCCCCCCcchHHHH-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecCC
Q psy2071         182 DEAHERTLATDILM-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTPE  248 (302)
Q Consensus       182 DE~~~p~~~lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~~  248 (302)
                      ||   ||.++|... ..|.++++.+ .+.|+.++++|||+..+.+++|+|+||. .|+    +...++|..|.
T Consensus       182 DE---PTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~-~G~ivE~~~t~~lF~~Pq  250 (534)
T COG4172         182 DE---PTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQ-HGEIVETGTTETLFAAPQ  250 (534)
T ss_pred             cC---CcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEe-ccEEeecCcHHHHhhCCC
Confidence            99   999999777 7777887754 4679999999999999999999999998 443    34555555544

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.93  E-value=1e-26  Score=213.96  Aligned_cols=165  Identities=15%  Similarity=0.198  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh------hhhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS------EEMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v  139 (302)
                      .+++++|++.+|+.++||||+|||||||.+.+.|..+|.+|.+.++|.+.+.+......+.+.      +.+..|+.+|+
T Consensus       351 il~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNI  430 (580)
T COG4618         351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENI  430 (580)
T ss_pred             ceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHH
Confidence            478999999999999999999999999999999999999999999998776554433332221      12233445554


Q ss_pred             eeeeeecCCC-----------------------Ccccccc----ccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071         140 GYSIRFEDCS-----------------------SPKTVLK----YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD  192 (302)
Q Consensus       140 ~~~~~~~~~~-----------------------~~~~~~~----~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD  192 (302)
                      .-   |....                       ..+|.+.    .||||||||+++||||-.+|.+++|||   |.+++|
T Consensus       431 aR---f~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDE---PNsNLD  504 (580)
T COG4618         431 AR---FGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDE---PNSNLD  504 (580)
T ss_pred             Hh---ccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecC---CCCCcc
Confidence            32   22111                       1233332    399999999999999999999999999   999999


Q ss_pred             HHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         193 ILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       193 ~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ..- ..+.+.+...+..|.|++++||-...+ ..+|++.+|+ .|+.
T Consensus       505 ~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L-~~~Dkilvl~-~G~~  549 (580)
T COG4618         505 SEGEAALAAAILAAKARGGTVVVIAHRPSAL-ASVDKILVLQ-DGRI  549 (580)
T ss_pred             hhHHHHHHHHHHHHHHcCCEEEEEecCHHHH-hhcceeeeec-CChH
Confidence            777 556666666667789999999998755 5789999999 7765

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.93  E-value=1.5e-26  Score=225.66  Aligned_cols=167  Identities=19%  Similarity=0.206  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~v  139 (302)
                      +++++++.+++|++++|+||||||||||+++|+|++.|++|++.++|.+.+..........   +.+   .+..+..++.
T Consensus       357 ~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~  436 (555)
T TIGR01194       357 ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE  436 (555)
T ss_pred             eeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc
Confidence            5899999999999999999999999999999999999999999999877554332222111   111   1122222221


Q ss_pred             ee---------ee---eecC----CC-CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH-
Q psy2071         140 GY---------SI---RFED----CS-SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE-  200 (302)
Q Consensus       140 ~~---------~~---~~~~----~~-~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~-  200 (302)
                      .-         .+   ....    .+ ..++ ...|||||+||++||||++.+|+++||||   ||+++|+.. ..+.+ 
T Consensus       437 ~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~LSgGq~qRlalaRall~~~~ililDE---~ts~LD~~~~~~i~~~  512 (555)
T TIGR01194       437 GEHASLDNAQQYLQRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWLEDRPILLFDE---WAADQDPAFKRFFYEE  512 (555)
T ss_pred             ccchhHHHHHHHHHHcCCchhhcccccccCC-cccCCHHHHHHHHHHHHHHcCCCEEEEeC---CccCCCHHHHHHHHHH
Confidence            00         00   0000    00 0112 26799999999999999999999999999   999999888 55554 


Q ss_pred             HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++.....+.|++++||+.+.+ +.||++++|+ .|+.
T Consensus       513 l~~~~~~~~~tiiiisH~~~~~-~~~d~i~~l~-~G~i  548 (555)
T TIGR01194       513 LLPDLKRQGKTIIIISHDDQYF-ELADQIIKLA-AGCI  548 (555)
T ss_pred             HHHHHHhCCCEEEEEeccHHHH-HhCCEEEEEE-CCEE
Confidence            4443333478999999999865 5899999998 6653

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PLN03211 ABC transporter G-25; Provisional

Probab=99.93  E-value=2.3e-27  Score=234.12  Aligned_cols=174  Identities=16%  Similarity=0.193  Sum_probs=127.3

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc--CCCEEEeecCchhhh---HHHHHHHhhhhhcccc
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS--VGAKAVACTQPRRVA---AMSVAQRVSEEMDCQL  135 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~--~G~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~  135 (302)
                      ++...+++++++.+++||+++|+||||||||||+++|+|..+|+  +|++.++|.+.....   ...+.+........++
T Consensus        78 ~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV  157 (659)
T PLN03211         78 IQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTV  157 (659)
T ss_pred             CCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCH
Confidence            33445789999999999999999999999999999999998885  899999986532100   0001111111112344


Q ss_pred             ccceeeeeeec---------------------CC-CCc-----cccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         136 GQEVGYSIRFE---------------------DC-SSP-----KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       136 ~~~v~~~~~~~---------------------~~-~~~-----~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      .+++.+.....                     +. ...     +.....||||||||++||++|+.+|++|||||   ||
T Consensus       158 ~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDE---Pt  234 (659)
T PLN03211        158 RETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE---PT  234 (659)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeC---CC
Confidence            44443221000                     00 001     22345699999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHH-HHHhhccCCCeeeecCcC
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAG-KFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~-~~~~~~d~~~~l~i~g~~  238 (302)
                      +++|... ..+.+++++..+.|.||+++||+++ .+.++||++++|+ .|+.
T Consensus       235 sgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~-~G~i  285 (659)
T PLN03211        235 SGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLS-EGRC  285 (659)
T ss_pred             CCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEec-CCcE
Confidence            9999887 7788888876666899999999998 5889999999998 5543

>KOG0057|consensus

Probab=99.92  E-value=1.4e-26  Score=214.85  Aligned_cols=170  Identities=16%  Similarity=0.187  Sum_probs=129.7

Q ss_pred             ChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh------hhhcccc
Q psy2071          62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS------EEMDCQL  135 (302)
Q Consensus        62 p~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~  135 (302)
                      |...+++++++.|++|+-+||+|+|||||||+++++..++. .+|+|.|+|.+.+.+...++.+-++      ..++.++
T Consensus       363 ~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTI  441 (591)
T KOG0057|consen  363 PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTI  441 (591)
T ss_pred             CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhH
Confidence            34447899999999999999999999999999999999998 9999999999877665444444332      2345566


Q ss_pred             ccceeeeeeecC-------------------C-CCcc----ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071         136 GQEVGYSIRFED-------------------C-SSPK----TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT  191 (302)
Q Consensus       136 ~~~v~~~~~~~~-------------------~-~~~~----~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l  191 (302)
                      ..|+.|.-..-.                   . ....    .+-..||||||||+++|||++.+|+++++||   +|+++
T Consensus       442 l~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DE---aTS~L  518 (591)
T KOG0057|consen  442 LYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDE---ATSAL  518 (591)
T ss_pred             HHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecC---ccccc
Confidence            667766531100                   0 0111    2234499999999999999999999999999   99999


Q ss_pred             HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         192 DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       192 D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |... ..+.+.+.. ...+.|+|++-|+.+.+. -||+|++++ .|+.
T Consensus       519 D~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~-~~DkI~~l~-nG~v  563 (591)
T KOG0057|consen  519 DSETEREILDMIMD-VMSGRTVIMIVHRLDLLK-DFDKIIVLD-NGTV  563 (591)
T ss_pred             chhhHHHHHHHHHH-hcCCCeEEEEEecchhHh-cCCEEEEEE-CCee
Confidence            9776 444454444 234789999999999886 589999999 6653

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.92  E-value=2.4e-26  Score=243.13  Aligned_cols=168  Identities=15%  Similarity=0.200  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEe-ecCchhhhHHHHHH---Hhhh---hhcccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA-CTQPRRVAAMSVAQ---RVSE---EMDCQLGQ  137 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~-~~~~~~~~~~~~~~---~~~~---~~~~~~~~  137 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|++.|++|+|.++ |.+..........+   .+.+   .+..++.+
T Consensus       399 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~e  478 (1466)
T PTZ00265        399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKN  478 (1466)
T ss_pred             ceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHH
Confidence            47899999999999999999999999999999999999999999995 45443222211111   1222   12345666


Q ss_pred             ceeeeeee------------------------------------------------------------------------
Q psy2071         138 EVGYSIRF------------------------------------------------------------------------  145 (302)
Q Consensus       138 ~v~~~~~~------------------------------------------------------------------------  145 (302)
                      ++.+....                                                                        
T Consensus       479 NI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l  558 (1466)
T PTZ00265        479 NIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLI  558 (1466)
T ss_pred             HHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCc
Confidence            66553200                                                                        


Q ss_pred             c----CC-CCc----cccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCC-CcEEEEE
Q psy2071         146 E----DC-SSP----KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRAD-LKLVIMS  214 (302)
Q Consensus       146 ~----~~-~~~----~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~  214 (302)
                      +    .. ...    ......|||||+||++|||||+.+|++|||||   ||+++|+.. ..+.+.+.+..+ .+.|+|+
T Consensus       559 ~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDE---pTSaLD~~se~~i~~~L~~~~~~~g~TvIi  635 (1466)
T PTZ00265        559 HDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDE---ATSSLDNKSEYLVQKTINNLKGNENRITII  635 (1466)
T ss_pred             HHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---cccccCHHHHHHHHHHHHHHhhcCCCEEEE
Confidence            0    00 000    12234599999999999999999999999999   999999888 778888877643 4789999


Q ss_pred             EecCHHHHHhhccCCCeeeecCc
Q psy2071         215 ATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       215 ~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +||+++.+ +.||++++|+ .|+
T Consensus       636 IsHrls~i-~~aD~Iivl~-~g~  656 (1466)
T PTZ00265        636 IAHRLSTI-RYANTIFVLS-NRE  656 (1466)
T ss_pred             EeCCHHHH-HhCCEEEEEe-CCc
Confidence            99999987 6899999998 663

>KOG0055|consensus

Probab=99.92  E-value=2.2e-26  Score=231.39  Aligned_cols=170  Identities=18%  Similarity=0.252  Sum_probs=139.8

Q ss_pred             ChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh---h---hhcccc
Q psy2071          62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS---E---EMDCQL  135 (302)
Q Consensus        62 p~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~---~---~~~~~~  135 (302)
                      |...+++++++.|++|+.++|+||+||||||.+-+|-..|.|+.|.+.++|.+.+.+....+...++   +   .++.++
T Consensus      1001 P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TI 1080 (1228)
T KOG0055|consen 1001 PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTI 1080 (1228)
T ss_pred             CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccH
Confidence            4566799999999999999999999999999999999999999999999999988877766666543   3   346789


Q ss_pred             ccceeeeeeecC--------------------CCCcccccc----ccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071         136 GQEVGYSIRFED--------------------CSSPKTVLK----YMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT  191 (302)
Q Consensus       136 ~~~v~~~~~~~~--------------------~~~~~~~~~----~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l  191 (302)
                      ++|+.|...--.                    ....+|.+.    .||||||||++||||++.||++|||||   -|++|
T Consensus      1081 rENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDE---ATSAL 1157 (1228)
T KOG0055|consen 1081 RENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDE---ATSAL 1157 (1228)
T ss_pred             HHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeec---cchhh
Confidence            999999831100                    001234333    499999999999999999999999999   89999


Q ss_pred             HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         192 DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       192 D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      |... ..+.+.+++... |.|.|++.|-+..+. .||.|+|++ .|+
T Consensus      1158 DseSErvVQeALd~a~~-gRT~IvIAHRLSTIq-naD~I~Vi~-~G~ 1201 (1228)
T KOG0055|consen 1158 DSESERVVQEALDRAME-GRTTIVIAHRLSTIQ-NADVIAVLK-NGK 1201 (1228)
T ss_pred             hhhhHHHHHHHHHHhhc-CCcEEEEecchhhhh-cCCEEEEEE-CCE
Confidence            9777 788888887655 566667799999885 699999999 664

>PLN03073 ABC transporter F family; Provisional

Probab=99.92  E-value=2.6e-26  Score=228.02  Aligned_cols=164  Identities=15%  Similarity=0.128  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH--------HHH----hhhhhcc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV--------AQR----VSEEMDC  133 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~--------~~~----~~~~~~~  133 (302)
                      +++++++.|.+|++++|+||||||||||+++|+|+++|++|.+.+.+..  +++...+        ...    .......
T Consensus       524 il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~--~igyv~Q~~~~~l~~~~~~~~~~~~~~~~  601 (718)
T PLN03073        524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV--RMAVFSQHHVDGLDLSSNPLLYMMRCFPG  601 (718)
T ss_pred             eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCce--eEEEEeccccccCCcchhHHHHHHHhcCC
Confidence            5789999999999999999999999999999999999999998764321  1110000        000    0000000


Q ss_pred             ccccceeeeeeecCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcE
Q psy2071         134 QLGQEVGYSIRFEDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKL  210 (302)
Q Consensus       134 ~~~~~v~~~~~~~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~  210 (302)
                      ...+.+...+......  ..+..+..|||||+||++||++++.+|++|||||   ||+++|+.. ..+.+.+...  .+ 
T Consensus       602 ~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE---PT~~LD~~s~~~l~~~L~~~--~g-  675 (718)
T PLN03073        602 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDE---PSNHLDLDAVEALIQGLVLF--QG-  675 (718)
T ss_pred             CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcC---CCCCCCHHHHHHHHHHHHHc--CC-
Confidence            0000010001111111  2345678899999999999999999999999999   999999877 5566666544  24 


Q ss_pred             EEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         211 VIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       211 ~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |||++|||.+++..+||++++|. .|+.
T Consensus       676 tvIivSHd~~~i~~~~drv~~l~-~G~i  702 (718)
T PLN03073        676 GVLMVSHDEHLISGSVDELWVVS-EGKV  702 (718)
T ss_pred             EEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence            89999999999999999999998 6653

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional

Probab=99.92  E-value=8e-25  Score=223.90  Aligned_cols=192  Identities=45%  Similarity=0.774  Sum_probs=173.3

Q ss_pred             HhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccc
Q psy2071          56 RKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQ  134 (302)
Q Consensus        56 ~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~  134 (302)
                      ..+..||++..+++|...|..+++++|.|++||||||++++++-...  .| ...|.+++|+++++.+++.+++.+++..
T Consensus        68 ~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g--~g~~g~I~~TQPRRlAArsLA~RVA~El~~~  145 (1294)
T PRK11131         68 TYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELG--RGVKGLIGHTQPRRLAARTVANRIAEELETE  145 (1294)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcC--CCCCCceeeCCCcHHHHHHHHHHHHHHHhhh
Confidence            34567999999999999999999999999999999999999876542  22 3467889999999999999999999988


Q ss_pred             cccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEE
Q psy2071         135 LGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMS  214 (302)
Q Consensus       135 ~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~  214 (302)
                      ++..+||.++++.....++.+.+++.|...+......++.+.++||+||+||++.++|.+...+++++..+.+.++++++
T Consensus       146 lG~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmS  225 (1294)
T PRK11131        146 LGGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITS  225 (1294)
T ss_pred             hcceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEee
Confidence            99999999999888888899999999999998888889999999999999999999998888888888777778999999


Q ss_pred             EecCHHHHHhhccCCCeeeecCcCCccceeecCCC
Q psy2071         215 ATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP  249 (302)
Q Consensus       215 ~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~~  249 (302)
                      +|.+.+.+.+++...+++.++|+.+|++++|.+..
T Consensus       226 ATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~  260 (1294)
T PRK11131        226 ATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIV  260 (1294)
T ss_pred             CCCCHHHHHHHcCCCCEEEEcCccccceEEEeecc
Confidence            99999999999999999999999999999998753

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.92  E-value=1.3e-26  Score=245.01  Aligned_cols=174  Identities=16%  Similarity=0.173  Sum_probs=135.0

Q ss_pred             HhhcCCC---hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----------------------------
Q psy2071          56 RKRITLP---VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----------------------------  103 (302)
Q Consensus        56 ~~r~~lp---~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----------------------------  103 (302)
                      +..+.+|   ...+++++++.|++|+.++|+|+|||||||++++|+|++.|                             
T Consensus      1170 nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 (1466)
T PTZ00265       1170 DVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQN 1249 (1466)
T ss_pred             EEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccc
Confidence            3444554   23478999999999999999999999999999999999998                             


Q ss_pred             -------------------------cCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccceeeeeeecC-----
Q psy2071         104 -------------------------SVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEVGYSIRFED-----  147 (302)
Q Consensus       104 -------------------------~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v~~~~~~~~-----  147 (302)
                                               ++|.|.++|.+.+.+....+...+   .+   .+..++.+|+.|......     
T Consensus      1250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~ 1329 (1466)
T PTZ00265       1250 VGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVK 1329 (1466)
T ss_pred             cccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHH
Confidence                                     589999999987765544444333   22   345678888877631100     


Q ss_pred             --------------C-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcC-
Q psy2071         148 --------------C-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRA-  206 (302)
Q Consensus       148 --------------~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~-  206 (302)
                                    . ...++.+    ..||||||||++|||||+.+|++|||||   +|+++|... ..+.+.+.... 
T Consensus      1330 ~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDE---aTSaLD~~sE~~I~~~L~~~~~ 1406 (1466)
T PTZ00265       1330 RACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDE---ATSSLDSNSEKLIEKTIVDIKD 1406 (1466)
T ss_pred             HHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---cccccCHHHHHHHHHHHHHHhc
Confidence                          0 0113333    3499999999999999999999999999   999999888 67777777653 


Q ss_pred             CCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         207 DLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       207 ~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      ..+.|+|++||.+..+. .||+|++|+
T Consensus      1407 ~~~~TvIiIaHRlsti~-~aD~Ivvl~ 1432 (1466)
T PTZ00265       1407 KADKTIITIAHRIASIK-RSDKIVVFN 1432 (1466)
T ss_pred             cCCCEEEEEechHHHHH-hCCEEEEEe
Confidence            24689999999998875 699999998

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.92  E-value=3.4e-26  Score=222.83  Aligned_cols=168  Identities=17%  Similarity=0.149  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccc-
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQE-  138 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~-  138 (302)
                      +++++++.|++|+.++|+||||||||||+++|+|+++|++|++.++|.+..........+.+   .+   .+..++.++ 
T Consensus       338 ~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~  417 (547)
T PRK10522        338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEG  417 (547)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhcccc
Confidence            58999999999999999999999999999999999999999999998765432222221111   11   111122221 


Q ss_pred             -------eeee---eeecCCCC-ccc--cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHH
Q psy2071         139 -------VGYS---IRFEDCSS-PKT--VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQ  204 (302)
Q Consensus       139 -------v~~~---~~~~~~~~-~~~--~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~  204 (302)
                             +...   ........ .+.  .-..|||||+||++||||++.+|++|||||   ||+++|+.. ..+.+.+..
T Consensus       418 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE---~ts~LD~~~~~~i~~~l~~  494 (547)
T PRK10522        418 KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE---WAADQDPHFRREFYQVLLP  494 (547)
T ss_pred             CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC---CCCCCCHHHHHHHHHHHHH
Confidence                   0000   00000000 011  124799999999999999999999999999   999999887 555555543


Q ss_pred             -cCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         205 -RADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       205 -~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       .++.+.|++++||+.+.+ ..||++++|+ .|+.
T Consensus       495 ~~~~~~~tvi~itH~~~~~-~~~d~i~~l~-~G~i  527 (547)
T PRK10522        495 LLQEMGKTIFAISHDDHYF-IHADRLLEMR-NGQL  527 (547)
T ss_pred             HHHhCCCEEEEEEechHHH-HhCCEEEEEE-CCEE
Confidence             233478999999999765 5899999998 6764

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.92  E-value=8.7e-26  Score=215.77  Aligned_cols=167  Identities=18%  Similarity=0.198  Sum_probs=121.9

Q ss_pred             CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeec--------CchhhhHHHHHHH-----
Q psy2071          60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT--------QPRRVAAMSVAQR-----  126 (302)
Q Consensus        60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~--------~~~~~~~~~~~~~-----  126 (302)
                      .++...+.+++++.+.+|+.+||||+|||||||||++|+|...|++|.|.....        .+.......+...     
T Consensus        12 ~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~   91 (530)
T COG0488          12 AYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGF   91 (530)
T ss_pred             eeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhh
Confidence            345555688999999999999999999999999999999999999998876542        1100000000000     


Q ss_pred             ------------hhhhh-------------------ccccc---cceeeeeeecCCCCccccccccCHHHHHHHhccccC
Q psy2071         127 ------------VSEEM-------------------DCQLG---QEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPM  172 (302)
Q Consensus       127 ------------~~~~~-------------------~~~~~---~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al  172 (302)
                                  ....+                   ..+..   ..+...+.+   ...++.+..||||++.|++||++|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~---~~~~~~~~~LSGG~r~Rv~LA~aL  168 (530)
T COG0488          92 GELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGF---PDEDRPVSSLSGGWRRRVALARAL  168 (530)
T ss_pred             HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCC---CcccCchhhcCHHHHHHHHHHHHH
Confidence                        00000                   00000   001111111   112678899999999999999999


Q ss_pred             CCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecC
Q psy2071         173 LENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG  236 (302)
Q Consensus       173 ~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g  236 (302)
                      +.+|++|||||   ||++||... ..|.+.+..++  | |+|+||||-.++...|++|+-++ .|
T Consensus       169 ~~~pDlLLLDE---PTNHLD~~~i~WLe~~L~~~~--g-tviiVSHDR~FLd~V~t~I~~ld-~g  226 (530)
T COG0488         169 LEEPDLLLLDE---PTNHLDLESIEWLEDYLKRYP--G-TVIVVSHDRYFLDNVATHILELD-RG  226 (530)
T ss_pred             hcCCCEEEEcC---CCcccCHHHHHHHHHHHHhCC--C-cEEEEeCCHHHHHHHhhheEEec-CC
Confidence            99999999999   999999776 88999987654  4 89999999999999999999998 55

>PLN03232 ABC transporter C family member; Provisional

Probab=99.92  E-value=1e-25  Score=239.75  Aligned_cols=168  Identities=11%  Similarity=0.178  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh---h---hhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS---E---EMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~  138 (302)
                      .+++++++.|++||.+||+|+||||||||+++|.|++.|++|+|.++|.+...+.......+++   +   .+..++++|
T Consensus      1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~N 1329 (1495)
T PLN03232       1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFN 1329 (1495)
T ss_pred             cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHH
Confidence            3689999999999999999999999999999999999999999999998876655444443332   2   234466666


Q ss_pred             eeeeeeecC------------------C-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         139 VGYSIRFED------------------C-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       139 v~~~~~~~~------------------~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+.-...+                  . ...++.+    .+||||||||++|||||+.+|++|||||   +|+++|...
T Consensus      1330 L~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDE---ATSaLD~~T 1406 (1495)
T PLN03232       1330 IDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDE---ATASVDVRT 1406 (1495)
T ss_pred             cCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC---CcccCCHHH
Confidence            654311100                  0 0112222    3599999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+.++...+ +.|+|+++|.++.+.. ||+|++|+ .|+.
T Consensus      1407 e~~Iq~~L~~~~~-~~TvI~IAHRl~ti~~-~DrIlVL~-~G~i 1447 (1495)
T PLN03232       1407 DSLIQRTIREEFK-SCTMLVIAHRLNTIID-CDKILVLS-SGQV 1447 (1495)
T ss_pred             HHHHHHHHHHHcC-CCEEEEEeCCHHHHHh-CCEEEEEE-CCEE
Confidence             778888876533 6899999999999876 89999998 6653

>PLN03130 ABC transporter C family member; Provisional

Probab=99.92  E-value=1.3e-25  Score=239.60  Aligned_cols=166  Identities=13%  Similarity=0.189  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh---h---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS---E---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~v  139 (302)
                      +++++++.|++||.+||+|+||||||||+++|.+++.|++|+|.++|.+.+.+....+..+++   +   .+..++++|+
T Consensus      1254 VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNL 1333 (1622)
T PLN03130       1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNL 1333 (1622)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHh
Confidence            689999999999999999999999999999999999999999999998876655444444332   2   2344666666


Q ss_pred             eeeeeecC------------------C-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         140 GYSIRFED------------------C-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       140 ~~~~~~~~------------------~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+.-....                  . ...++.+    .+||+|||||++|||||+.+|++|||||   +|+++|... 
T Consensus      1334 d~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDE---ATSaLD~~Te 1410 (1622)
T PLN03130       1334 DPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDE---ATAAVDVRTD 1410 (1622)
T ss_pred             CcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEEC---CCCCCCHHHH
Confidence            54311100                  0 0112222    3599999999999999999999999999   999999888 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ..+.+.+++..+ +.|+|+++|.++.+.. ||+|++|+ .|+
T Consensus      1411 ~~Iq~~I~~~~~-~~TvI~IAHRL~tI~~-~DrIlVLd-~G~ 1449 (1622)
T PLN03130       1411 ALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILVLD-AGR 1449 (1622)
T ss_pred             HHHHHHHHHHCC-CCEEEEEeCChHHHHh-CCEEEEEE-CCE
Confidence            778888876543 6899999999999876 89999998 555

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.92  E-value=2.4e-26  Score=227.39  Aligned_cols=168  Identities=17%  Similarity=0.115  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH-------HHHhhh----hhccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV-------AQRVSE----EMDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~-------~~~~~~----~~~~~  134 (302)
                      .++++++.+++||+++|+|+||||||||+++|+|+++|++|++.++|.+.........       ...+++    ....+
T Consensus        23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t  102 (648)
T PRK10535         23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLT  102 (648)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCC
Confidence            5788999999999999999999999999999999999999999999876433221110       011111    11223


Q ss_pred             cccceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         135 LGQEVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       135 ~~~~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+++.+...                   +......++....||+||+||++||++|+.+|++|||||   |+.++|+..
T Consensus       103 v~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDE---P~~gLD~~s  179 (648)
T PRK10535        103 AAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADE---PTGALDSHS  179 (648)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEC---CCCCCCHHH
Confidence            3333322110                   000112245567799999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.++++...+.+.|++++||+.+.+. .||++++|+ .|+.
T Consensus       180 ~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~-~G~i  221 (648)
T PRK10535        180 GEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIR-DGEI  221 (648)
T ss_pred             HHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEE-CCEE
Confidence             7888888876556889999999999875 699999998 6654

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.91  E-value=5.1e-26  Score=224.05  Aligned_cols=169  Identities=17%  Similarity=0.220  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc---CCCEEEeecCchhhhHHHHHHHhhh----hhccccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS---VGAKAVACTQPRRVAAMSVAQRVSE----EMDCQLGQE  138 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~---~G~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  138 (302)
                      ++++++..+++||+++|+||||||||||+++|+|...+.   +|++.++|.............++.+    ....++.++
T Consensus        40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~  119 (617)
T TIGR00955        40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREH  119 (617)
T ss_pred             cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHH
Confidence            689999999999999999999999999999999998775   6899999876432111111111221    223455665


Q ss_pred             eeeeeeecC----------------------CCCcccccc------ccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071         139 VGYSIRFED----------------------CSSPKTVLK------YMTDGMLLREGMSDPMLENYQVILLDEAHERTLA  190 (302)
Q Consensus       139 v~~~~~~~~----------------------~~~~~~~~~------~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~  190 (302)
                      +.+...+..                      ....++.+.      .||||||||++||++|+.+|++++|||   |+++
T Consensus       120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE---Ptsg  196 (617)
T TIGR00955       120 LMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE---PTSG  196 (617)
T ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC---CCcc
Confidence            544322110                      011234443      599999999999999999999999999   9999


Q ss_pred             hHHHH-HHHHHHHHHcCCCcEEEEEEecCHH-HHHhhccCCCeeeecCcC
Q psy2071         191 TDILM-GVLKEVIKQRADLKLVIMSATLDAG-KFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       191 lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~-~~~~~~d~~~~l~i~g~~  238 (302)
                      +|... ..+.+.+++..+.|.|+|+++|+.. ++.++||++++|+ .|+.
T Consensus       197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~  245 (617)
T TIGR00955       197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRV  245 (617)
T ss_pred             hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeE
Confidence            99877 6777777776666899999999984 7889999999998 6653

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.5e-25  Score=182.60  Aligned_cols=151  Identities=15%  Similarity=0.156  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------HHHHHHhhhhhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------MSVAQRVSEEMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v  139 (302)
                      ...++++++.+||++.|.|||||||||||++++|+..|++|+|.+.+........      .++..+...-...++.+|+
T Consensus        17 lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL   96 (209)
T COG4133          17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENL   96 (209)
T ss_pred             eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHH
Confidence            4678899999999999999999999999999999999999999998765433221      1111111222234555665


Q ss_pred             eeeeeecCC----------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHH
Q psy2071         140 GYSIRFEDC----------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVI  202 (302)
Q Consensus       140 ~~~~~~~~~----------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll  202 (302)
                      .|.-++...                ...+.+..+||.||++|++|||-+++..++.||||   |+.++|... ..+..++
T Consensus        97 ~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDE---P~taLDk~g~a~l~~l~  173 (209)
T COG4133          97 HFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDE---PFTALDKEGVALLTALM  173 (209)
T ss_pred             HHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecC---cccccCHHHHHHHHHHH
Confidence            554443332                13456778899999999999999999999999999   999999877 7888888


Q ss_pred             HHcCCCcEEEEEEecCH
Q psy2071         203 KQRADLKLVIMSATLDA  219 (302)
Q Consensus       203 ~~~~~~~~~ii~~thd~  219 (302)
                      ......|-+|+.+||..
T Consensus       174 ~~H~~~GGiVllttHq~  190 (209)
T COG4133         174 AAHAAQGGIVLLTTHQP  190 (209)
T ss_pred             HHHhcCCCEEEEecCCc
Confidence            87666677777789964

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.91  E-value=1e-25  Score=223.20  Aligned_cols=157  Identities=13%  Similarity=0.172  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeee-
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSI-  143 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-  143 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|+.|.+.+.+..  .++...+...   .+..++.+++.+.. 
T Consensus       466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~--~i~~v~Q~~~---l~~~tv~eni~~~~~  540 (659)
T TIGR00954       466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKG--KLFYVPQRPY---MTLGTLRDQIIYPDS  540 (659)
T ss_pred             eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCC--cEEEECCCCC---CCCcCHHHHHhcCCC
Confidence            46899999999999999999999999999999999999999987764311  1111100000   00012222222110 


Q ss_pred             ---------------------eecCC-------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         144 ---------------------RFEDC-------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       144 ---------------------~~~~~-------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                                           .....       .........|||||+||++||||++.+|+++||||   ||+++|+..
T Consensus       541 ~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDE---pts~LD~~~  617 (659)
T TIGR00954       541 SEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDE---CTSAVSVDV  617 (659)
T ss_pred             hhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeC---CccCCCHHH
Confidence                                 00000       00011235799999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                       ..+.++++..   +.|++++||+.+.+ .+||++++|+
T Consensus       618 ~~~l~~~l~~~---~~tvI~isH~~~~~-~~~d~il~l~  652 (659)
T TIGR00954       618 EGYMYRLCREF---GITLFSVSHRKSLW-KYHEYLLYMD  652 (659)
T ss_pred             HHHHHHHHHHc---CCEEEEEeCchHHH-HhCCEEEEEe
Confidence             6777777653   78999999999986 6899999987

>PLN03073 ABC transporter F family; Provisional

Probab=99.91  E-value=3.2e-25  Score=220.27  Aligned_cols=176  Identities=14%  Similarity=0.108  Sum_probs=121.9

Q ss_pred             HhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc---cccCCCEEEeecCc-----hhhhH-------
Q psy2071          56 RKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY---SKSVGAKAVACTQP-----RRVAA-------  120 (302)
Q Consensus        56 ~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~---~~~~G~~~i~~~~~-----~~~~~-------  120 (302)
                      +..+.++...+++++++.|.+|++++|+|+||||||||+++|+|..   .|..|.+.+..+..     .....       
T Consensus       182 nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~  261 (718)
T PLN03073        182 NFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIE  261 (718)
T ss_pred             eEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHH
Confidence            3444454445789999999999999999999999999999999864   56778887554321     10000       


Q ss_pred             -HHH----HHHhhhhhc---cccccc-----------------ee-----------ee--------eeecCC--CCcccc
Q psy2071         121 -MSV----AQRVSEEMD---CQLGQE-----------------VG-----------YS--------IRFEDC--SSPKTV  154 (302)
Q Consensus       121 -~~~----~~~~~~~~~---~~~~~~-----------------v~-----------~~--------~~~~~~--~~~~~~  154 (302)
                       ...    ...+.+...   .....+                 +.           |.        +.....  ...++.
T Consensus       262 ~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~  341 (718)
T PLN03073        262 RTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKA  341 (718)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCc
Confidence             000    001111100   000000                 00           00        000000  112456


Q ss_pred             ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         155 LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       155 ~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      +..|||||+||++||++|+.+|++|||||   ||+++|+.. ..+.++++..   +.|+|++|||.+++..+||++++|+
T Consensus       342 ~~~LSgG~k~rv~LA~aL~~~p~lLlLDE---Pt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~l~~~~d~i~~l~  415 (718)
T PLN03073        342 TKTFSGGWRMRIALARALFIEPDLLLLDE---PTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREFLNTVVTDILHLH  415 (718)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEEC---CCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCCEEEEEE
Confidence            78899999999999999999999999999   999999887 7788888765   5799999999999999999999998


Q ss_pred             ecCcC
Q psy2071         234 VPGRT  238 (302)
Q Consensus       234 i~g~~  238 (302)
                       .|+.
T Consensus       416 -~g~i  419 (718)
T PLN03073        416 -GQKL  419 (718)
T ss_pred             -CCEE
Confidence             6653

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.91  E-value=6.9e-25  Score=190.38  Aligned_cols=79  Identities=15%  Similarity=0.139  Sum_probs=69.5

Q ss_pred             ccccccccCHHHHHHHhccccCCCCC--cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         151 PKTVLKYMTDGMLLREGMSDPMLENY--QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       151 ~~~~~~~lS~G~~qr~~la~al~~~p--~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                      .+..+..||+||+||+++|++|+.+|  ++|||||   |+.++|+.. ..+.+++....+.+.|++++|||++++ .+||
T Consensus       131 ~~~~~~~LSgG~~qrv~laral~~~p~~~llllDE---Pt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~-~~~d  206 (226)
T cd03270         131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDE---PSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTI-RAAD  206 (226)
T ss_pred             ccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeC---CccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHH-HhCC
Confidence            45667889999999999999999998  5999999   999999887 777788776655688999999999987 5999


Q ss_pred             CCCeee
Q psy2071         228 NAPLMN  233 (302)
Q Consensus       228 ~~~~l~  233 (302)
                      ++++|.
T Consensus       207 ~i~~l~  212 (226)
T cd03270         207 HVIDIG  212 (226)
T ss_pred             EEEEeC
Confidence            999994

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.91  E-value=1.8e-25  Score=189.89  Aligned_cols=165  Identities=15%  Similarity=0.104  Sum_probs=109.9

Q ss_pred             HHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC---------CEEEeecCchhhhHHHHHHHhhhhhcccc---
Q psy2071          68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG---------AKAVACTQPRRVAAMSVAQRVSEEMDCQL---  135 (302)
Q Consensus        68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---  135 (302)
                      +++++.+.+| +++|+||||||||||+++|+|+..+..|         .+.+.+.+............+.+......   
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~   92 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII   92 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence            5567788999 9999999999999999999999866533         23333332211000000001111111000   


Q ss_pred             -ccceeeeeeecCCCCccccccccCHHHHHHHhccccCC----CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCc
Q psy2071         136 -GQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPML----ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLK  209 (302)
Q Consensus       136 -~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~----~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~  209 (302)
                       .+.+...+..  ....++.+..||+||+||+++|++++    .+|+++||||   |++++|+.. ..+.+++++..+ +
T Consensus        93 ~~~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE---P~~~LD~~~~~~l~~~l~~~~~-~  166 (197)
T cd03278          93 SQGDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE---VDAALDDANVERFARLLKEFSK-E  166 (197)
T ss_pred             ehhhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC---CcccCCHHHHHHHHHHHHHhcc-C
Confidence             0000000011  12234567789999999999999986    5679999999   999999887 778888887655 5


Q ss_pred             EEEEEEecCHHHHHhhccCCCeeeecCcCCc
Q psy2071         210 LVIMSATLDAGKFQQYFDNAPLMNVPGRTHP  240 (302)
Q Consensus       210 ~~ii~~thd~~~~~~~~d~~~~l~i~g~~~~  240 (302)
                      .+||++||+++.+ ++||+++.++-.+.+++
T Consensus       167 ~tiIiitH~~~~~-~~~d~v~~~~~~~~~~~  196 (197)
T cd03278         167 TQFIVITHRKGTM-EAADRLYGVTMQESGVS  196 (197)
T ss_pred             CEEEEEECCHHHH-hhcceEEEEEeccCCCC
Confidence            7899999999976 68999999985555543

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PTZ00243 ABC transporter; Provisional

Probab=99.91  E-value=4.1e-25  Score=235.34  Aligned_cols=167  Identities=16%  Similarity=0.171  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh---h---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS---E---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~v  139 (302)
                      +++++++.|++||.++|+|+||||||||+++|.|++.|++|.|.++|.+...+......+.++   +   .+..++++|+
T Consensus      1325 vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNI 1404 (1560)
T PTZ00243       1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNV 1404 (1560)
T ss_pred             eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHh
Confidence            689999999999999999999999999999999999999999999999876655444443332   2   2344666666


Q ss_pred             eeeeeecC-------------------CCCccccc----cccCHHHHHHHhccccCCCC-CcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFED-------------------CSSPKTVL----KYMTDGMLLREGMSDPMLEN-YQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~~-------------------~~~~~~~~----~~lS~G~~qr~~la~al~~~-p~lliLDE~~~p~~~lD~~~  195 (302)
                      ...-....                   ....++.+    .+||||||||++|||||+.+ |++|||||   +|+++|...
T Consensus      1405 dp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDE---ATSaLD~~t 1481 (1560)
T PTZ00243       1405 DPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDE---ATANIDPAL 1481 (1560)
T ss_pred             CcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeC---CCccCCHHH
Confidence            43211000                   00112333    45999999999999999996 89999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+.+....+ +.|+|+++|.++.+. .||+|++|+ .|+.
T Consensus      1482 e~~Iq~~L~~~~~-~~TvI~IAHRl~ti~-~~DrIlVLd-~G~V 1522 (1560)
T PTZ00243       1482 DRQIQATVMSAFS-AYTVITIAHRLHTVA-QYDKIIVMD-HGAV 1522 (1560)
T ss_pred             HHHHHHHHHHHCC-CCEEEEEeccHHHHH-hCCEEEEEE-CCEE
Confidence             778888876433 589999999998886 589999998 6653

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.90  E-value=4.1e-25  Score=235.56  Aligned_cols=168  Identities=11%  Similarity=0.186  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh---h---hhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS---E---EMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~  138 (302)
                      .+++++++.|++||.+||+|+||||||||+++|.+++.|++|+|.++|.+.+.+....+..+++   +   .+..++++|
T Consensus      1300 ~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~N 1379 (1522)
T TIGR00957      1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMN 1379 (1522)
T ss_pred             ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHH
Confidence            3689999999999999999999999999999999999999999999999877665544444332   1   234466666


Q ss_pred             eeeeeeec------------------CC-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         139 VGYSIRFE------------------DC-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       139 v~~~~~~~------------------~~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +...-...                  .. ...++.+    ..||+|||||++|||||+.+|++|||||   +|+++|...
T Consensus      1380 Ldp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDE---aTSalD~~T 1456 (1522)
T TIGR00957      1380 LDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDE---ATAAVDLET 1456 (1522)
T ss_pred             cCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC---CcccCCHHH
Confidence            64210000                  00 1123333    4599999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+.++...+ +.|+|+++|.++.+.. ||+|++|+ .|+.
T Consensus      1457 e~~Iq~~l~~~~~-~~TvI~IAHRl~ti~~-~DrIlVld-~G~I 1497 (1522)
T TIGR00957      1457 DNLIQSTIRTQFE-DCTVLTIAHRLNTIMD-YTRVIVLD-KGEV 1497 (1522)
T ss_pred             HHHHHHHHHHHcC-CCEEEEEecCHHHHHh-CCEEEEEE-CCEE
Confidence             778888876433 6899999999998875 79999999 6763

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=1e-24  Score=174.89  Aligned_cols=168  Identities=21%  Similarity=0.240  Sum_probs=122.1

Q ss_pred             CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC---------chhh------hHHHHH
Q psy2071          60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ---------PRRV------AAMSVA  124 (302)
Q Consensus        60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~---------~~~~------~~~~~~  124 (302)
                      .||+   +.+++++++.|||++|-||+|+||||+++++-+.|.|++|.|.+.-..         |+.+      ...++.
T Consensus        23 ~LpV---~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVS   99 (235)
T COG4778          23 RLPV---LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVS   99 (235)
T ss_pred             Eeee---eeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHH
Confidence            3566   678999999999999999999999999999999999999999885432         2221      111112


Q ss_pred             HHhhhhhccccccceeeee-------------------eecCCCC-ccccccccCHHHHHHHhccccCCCCCcEEEEcCC
Q psy2071         125 QRVSEEMDCQLGQEVGYSI-------------------RFEDCSS-PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEA  184 (302)
Q Consensus       125 ~~~~~~~~~~~~~~v~~~~-------------------~~~~~~~-~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~  184 (302)
                      |++...+.....+-+...+                   +++.... =.-....+|||++||+.|||.++.++.+|+||| 
T Consensus       100 QFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDE-  178 (235)
T COG4778         100 QFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDE-  178 (235)
T ss_pred             HHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecC-
Confidence            2111111111111111111                   0000000 011235599999999999999999999999999 


Q ss_pred             CCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         185 HERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       185 ~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                        ||+++|... +.+.+++...+..|..++-+-||-+.=...|||+.-+.
T Consensus       179 --PTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~  226 (235)
T COG4778         179 --PTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS  226 (235)
T ss_pred             --CcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence              999999887 88899999888889999999999999999999987765

>KOG0059|consensus

Probab=99.89  E-value=2.4e-24  Score=219.12  Aligned_cols=168  Identities=15%  Similarity=0.137  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-h---HHHH----HHHhhhhhcccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-A---AMSV----AQRVSEEMDCQLGQ  137 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-~---~~~~----~~~~~~~~~~~~~~  137 (302)
                      +.+++++.|++||+.|++|+|||||||+++++.|+.+|++|++.+.|...... .   +...    .|..+.....+.++
T Consensus       580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE  659 (885)
T KOG0059|consen  580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE  659 (885)
T ss_pred             hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence            78899999999999999999999999999999999999999999977654321 0   1100    11111112223333


Q ss_pred             ceeeeeeec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071         138 EVGYSIRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV  197 (302)
Q Consensus       138 ~v~~~~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~  197 (302)
                      .+.+..+..                   .....++.+..+|||+|+|+++|.|++.+|++++|||   |+.|+||.. +.
T Consensus       660 hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDE---PstGmDP~arr~  736 (885)
T KOG0059|consen  660 HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDE---PSTGLDPKARRH  736 (885)
T ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecC---CCCCCCHHHHHH
Confidence            222222111                   1123456678899999999999999999999999999   999999988 88


Q ss_pred             HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         198 LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       198 l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +++++....+.|..+|.+||.|++++.+|||+++|. .|+
T Consensus       737 lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv-~G~  775 (885)
T KOG0059|consen  737 LWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMV-IGQ  775 (885)
T ss_pred             HHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheee-cCe
Confidence            999998776666588889999999999999999987 544

>PLN03140 ABC transporter G family member; Provisional

Probab=99.89  E-value=7e-25  Score=231.28  Aligned_cols=170  Identities=14%  Similarity=0.175  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc--cCCCEEEeecCchhhhHHHHHHHhh----hhhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK--SVGAKAVACTQPRRVAAMSVAQRVS----EEMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~--~~G~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  138 (302)
                      .++++++..+++|++++|+||||||||||+++|+|...+  .+|++.++|.+...........++.    .....++.++
T Consensus       894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~  973 (1470)
T PLN03140        894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRES  973 (1470)
T ss_pred             eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHH
Confidence            468899999999999999999999999999999998763  5799999886543211111111111    1223455555


Q ss_pred             eeeeeeec----------------------CCCCccccc-----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071         139 VGYSIRFE----------------------DCSSPKTVL-----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT  191 (302)
Q Consensus       139 v~~~~~~~----------------------~~~~~~~~~-----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l  191 (302)
                      +.+.....                      .....++.+     ..||||||||++||++|+.+|++|||||   ||+++
T Consensus       974 L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDE---PTsgL 1050 (1470)
T PLN03140        974 LIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDE---PTSGL 1050 (1470)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeC---CCCCC
Confidence            54321110                      000123333     5799999999999999999999999999   99999


Q ss_pred             HHHH-HHHHHHHHHcCCCcEEEEEEecCHH-HHHhhccCCCeeeecCc
Q psy2071         192 DILM-GVLKEVIKQRADLKLVIMSATLDAG-KFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       192 D~~~-~~l~~ll~~~~~~~~~ii~~thd~~-~~~~~~d~~~~l~i~g~  237 (302)
                      |... ..+.+++++..+.|.|||++||+.+ .+.++||++++|+-.|+
T Consensus      1051 D~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140       1051 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence            9877 7788888877667889999999998 57789999999972244

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.89  E-value=4.8e-25  Score=232.83  Aligned_cols=167  Identities=16%  Similarity=0.152  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc---ccCCCEEEeecCchhhhHHHHHHHhhh----hhcccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS---KSVGAKAVACTQPRRVAAMSVAQRVSE----EMDCQLGQ  137 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~---~~~G~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~  137 (302)
                      .++++++..+++|++++|+||||||||||+++|+|..+   +++|++.++|.+... ........+.+    ....++.+
T Consensus       777 ~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E  855 (1394)
T TIGR00956       777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRE  855 (1394)
T ss_pred             EeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHH
Confidence            36899999999999999999999999999999999987   688999999876421 11111111111    22345555


Q ss_pred             ceeeeeeec----------------------CCCCcccccc----ccCHHHHHHHhccccCCCCCc-EEEEcCCCCCCcc
Q psy2071         138 EVGYSIRFE----------------------DCSSPKTVLK----YMTDGMLLREGMSDPMLENYQ-VILLDEAHERTLA  190 (302)
Q Consensus       138 ~v~~~~~~~----------------------~~~~~~~~~~----~lS~G~~qr~~la~al~~~p~-lliLDE~~~p~~~  190 (302)
                      ++.+.....                      .....++.+.    .||||||||++||++|+.+|+ +|||||   ||++
T Consensus       856 ~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDE---PTsg  932 (1394)
T TIGR00956       856 SLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDE---PTSG  932 (1394)
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcC---CCCC
Confidence            554322110                      0011234444    699999999999999999997 999999   9999


Q ss_pred             hHHHH-HHHHHHHHHcCCCcEEEEEEecCHHH-HHhhccCCCeeeecC
Q psy2071         191 TDILM-GVLKEVIKQRADLKLVIMSATLDAGK-FQQYFDNAPLMNVPG  236 (302)
Q Consensus       191 lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~-~~~~~d~~~~l~i~g  236 (302)
                      +|... ..+.+++++..+.|.|||++||+++. +.+.||++.+|+ .|
T Consensus       933 LD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~-~G  979 (1394)
T TIGR00956       933 LDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQ-KG  979 (1394)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEc-CC
Confidence            99887 77888888776668999999999986 457899999998 55

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.89  E-value=2.9e-24  Score=228.50  Aligned_cols=166  Identities=14%  Similarity=0.171  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh------hhhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS------EEMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  138 (302)
                      .+++++++.|++||.++|+|+||||||||+++|+|++. .+|+|.++|.+...+....+.++++      ..+..++++|
T Consensus      1233 ~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~N 1311 (1490)
T TIGR01271      1233 AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN 1311 (1490)
T ss_pred             ceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHH
Confidence            36899999999999999999999999999999999987 7899999998876655444433332      1234456666


Q ss_pred             eeeeeeec------------------CC-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         139 VGYSIRFE------------------DC-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       139 v~~~~~~~------------------~~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +...-...                  .. ...++.+    ..||+|||||++|||||+.+|++|||||   ||+++|...
T Consensus      1312 Ldp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDE---aTS~lD~~T 1388 (1490)
T TIGR01271      1312 LDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDE---PSAHLDPVT 1388 (1490)
T ss_pred             hCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeC---CcccCCHHH
Confidence            53221000                  00 0112222    2599999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                       ..+.+.++.... +.|+|++||.++.+.. ||+|++|+ .|+
T Consensus      1389 e~~I~~~L~~~~~-~~TvI~IaHRl~ti~~-~DrIlvL~-~G~ 1428 (1490)
T TIGR01271      1389 LQIIRKTLKQSFS-NCTVILSEHRVEALLE-CQQFLVIE-GSS 1428 (1490)
T ss_pred             HHHHHHHHHHHcC-CCEEEEEecCHHHHHh-CCEEEEEE-CCE
Confidence             778888876533 6899999999998875 89999998 565

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=7.3e-24  Score=177.97  Aligned_cols=168  Identities=15%  Similarity=0.109  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc--ccccCCCEEEeecCchhhhHHH-------HH-HHhhhhhccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE--YSKSVGAKAVACTQPRRVAAMS-------VA-QRVSEEMDCQ  134 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~--~~~~~G~~~i~~~~~~~~~~~~-------~~-~~~~~~~~~~  134 (302)
                      .+++++++.|++||+.+|+||||||||||...|+|.  |.++.|+|.+.|.+......-.       ++ |+.....+.+
T Consensus        18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~   97 (251)
T COG0396          18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVT   97 (251)
T ss_pred             hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCee
Confidence            578999999999999999999999999999999997  4788999999998743222111       11 1111111111


Q ss_pred             cccceee------------------------eeeecCCCCcccc-ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071         135 LGQEVGY------------------------SIRFEDCSSPKTV-LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL  189 (302)
Q Consensus       135 ~~~~v~~------------------------~~~~~~~~~~~~~-~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~  189 (302)
                      ..+.+..                        .+.+.. ...++. -.-+|||+++|..|+..++.+|++.||||   |.+
T Consensus        98 ~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~-~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE---~DS  173 (251)
T COG0396          98 NSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE-EFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDE---PDS  173 (251)
T ss_pred             HHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCH-HHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecC---CCc
Confidence            1111000                        000000 011111 12399999999999999999999999999   999


Q ss_pred             chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhc-cCCCeeeecCc
Q psy2071         190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYF-DNAPLMNVPGR  237 (302)
Q Consensus       190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~-d~~~~l~i~g~  237 (302)
                      |+|.-. ..+.+.++.+++.+..++++||.-..+..+- |++-+|. .|+
T Consensus       174 GLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~-~Gr  222 (251)
T COG0396         174 GLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLY-DGR  222 (251)
T ss_pred             CccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEE-CCE
Confidence            999766 8999999988888999999999876554332 7777776 665

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.89  E-value=2.2e-24  Score=206.19  Aligned_cols=163  Identities=21%  Similarity=0.204  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc-----hhh----hHHHHHHHhhhhhcccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP-----RRV----AAMSVAQRVSEEMDCQL  135 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~-----~~~----~~~~~~~~~~~~~~~~~  135 (302)
                      .+.+++++.|..|+.++|+||||+||||||+.|+|...|.+|.+.+...-.     ...    ....+...+........
T Consensus       336 ~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~  415 (530)
T COG0488         336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGD  415 (530)
T ss_pred             eeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCcccc
Confidence            457899999999999999999999999999999999999999776533210     000    00011111111110000


Q ss_pred             ccce-eeeeeec-CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEE
Q psy2071         136 GQEV-GYSIRFE-DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVI  212 (302)
Q Consensus       136 ~~~v-~~~~~~~-~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~i  212 (302)
                      ...+ ++.-+|. ......+++..||||||.|+++|+.++.+|.+|||||   ||+.||... ..|.+.+...   .-||
T Consensus       416 e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE---PTNhLDi~s~~aLe~aL~~f---~Gtv  489 (530)
T COG0488         416 EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDE---PTNHLDIESLEALEEALLDF---EGTV  489 (530)
T ss_pred             HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcC---CCccCCHHHHHHHHHHHHhC---CCeE
Confidence            0011 0111111 1112357788999999999999999999999999999   999999777 8888888776   3488


Q ss_pred             EEEecCHHHHHhhccCCCeee
Q psy2071         213 MSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       213 i~~thd~~~~~~~~d~~~~l~  233 (302)
                      |+||||..++..+|++++.+.
T Consensus       490 l~VSHDr~Fl~~va~~i~~~~  510 (530)
T COG0488         490 LLVSHDRYFLDRVATRIWLVE  510 (530)
T ss_pred             EEEeCCHHHHHhhcceEEEEc
Confidence            889999999999999998887

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.89  E-value=2.4e-24  Score=229.13  Aligned_cols=159  Identities=15%  Similarity=0.157  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|.+.+.|.    +++..+...   .+..++.+|+.+...+
T Consensus       441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~----iayv~Q~~~---l~~~Ti~eNI~~g~~~  513 (1490)
T TIGR01271       441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR----ISFSPQTSW---IMPGTIKDNIIFGLSY  513 (1490)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE----EEEEeCCCc---cCCccHHHHHHhcccc
Confidence            578999999999999999999999999999999999999999988762    111111100   0112333333322111


Q ss_pred             c-----------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH-
Q psy2071         146 E-----------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE-  200 (302)
Q Consensus       146 ~-----------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~-  200 (302)
                      .                       ...........||||||||++||||++.+|+++||||   |++++|... ..+.+ 
T Consensus       514 ~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDe---p~saLD~~~~~~i~~~  590 (1490)
T TIGR01271       514 DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS---PFTHLDVVTEKEIFES  590 (1490)
T ss_pred             chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHHHHHH
Confidence            0                       0001122346799999999999999999999999999   999999877 55554 


Q ss_pred             HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ++.... .+.|+|++||+++.+. .||++++|+ .|+
T Consensus       591 ~l~~~~-~~~tvilvtH~~~~~~-~ad~ii~l~-~g~  624 (1490)
T TIGR01271       591 CLCKLM-SNKTRILVTSKLEHLK-KADKILLLH-EGV  624 (1490)
T ss_pred             HHHHHh-cCCeEEEEeCChHHHH-hCCEEEEEE-CCE
Confidence            454433 3789999999999886 599999997 443

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.89  E-value=9.6e-25  Score=230.58  Aligned_cols=173  Identities=16%  Similarity=0.193  Sum_probs=126.4

Q ss_pred             ChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc----cccCCCEEEeecCchhhhH------HHHHHHhhhhh
Q psy2071          62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY----SKSVGAKAVACTQPRRVAA------MSVAQRVSEEM  131 (302)
Q Consensus        62 p~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~----~~~~G~~~i~~~~~~~~~~------~~~~~~~~~~~  131 (302)
                      +...++++++..+++|++++|+||||||||||+++|+|..    .|.+|++.++|.+......      ..+.+......
T Consensus        72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~  151 (1394)
T TIGR00956        72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP  151 (1394)
T ss_pred             CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence            4455789999999999999999999999999999999986    4689999999875432110      00111111112


Q ss_pred             ccccccceeeeeee---------------------------cCCCCccc-----cccccCHHHHHHHhccccCCCCCcEE
Q psy2071         132 DCQLGQEVGYSIRF---------------------------EDCSSPKT-----VLKYMTDGMLLREGMSDPMLENYQVI  179 (302)
Q Consensus       132 ~~~~~~~v~~~~~~---------------------------~~~~~~~~-----~~~~lS~G~~qr~~la~al~~~p~ll  179 (302)
                      ..++.+++.+..+.                           ......++     .+..||||||||++||++|+.+|+++
T Consensus       152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl  231 (1394)
T TIGR00956       152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ  231 (1394)
T ss_pred             CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence            23444443322110                           00001122     24569999999999999999999999


Q ss_pred             EEcCCCCCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCH-HHHHhhccCCCeeeecCcC
Q psy2071         180 LLDEAHERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDA-GKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       180 iLDE~~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~-~~~~~~~d~~~~l~i~g~~  238 (302)
                      +|||   ||+++|... ..+.++++...+ .|.|+++++|+. +.+.++||++++|+ .|+.
T Consensus       232 llDE---PTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~-~G~i  289 (1394)
T TIGR00956       232 CWDN---ATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLY-EGYQ  289 (1394)
T ss_pred             EEeC---CCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe-CCeE
Confidence            9999   999999887 667778877654 488999999996 78999999999998 6653

>PLN03140 ABC transporter G family member; Provisional

Probab=99.89  E-value=1.8e-24  Score=228.28  Aligned_cols=172  Identities=14%  Similarity=0.206  Sum_probs=125.1

Q ss_pred             hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc---CCCEEEeecCchhhh----HHHHHHHhhhhhcccc
Q psy2071          63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS---VGAKAVACTQPRRVA----AMSVAQRVSEEMDCQL  135 (302)
Q Consensus        63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~---~G~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~  135 (302)
                      ...++++++..|++|++++|+|||||||||||++|+|.+.|+   +|++.++|.+.....    ...+.+........++
T Consensus       177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV  256 (1470)
T PLN03140        177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV  256 (1470)
T ss_pred             cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence            355789999999999999999999999999999999999988   899999886532111    0001111011112233


Q ss_pred             ccceeeeee-------------------------------------------------------ecCCC---Cccccccc
Q psy2071         136 GQEVGYSIR-------------------------------------------------------FEDCS---SPKTVLKY  157 (302)
Q Consensus       136 ~~~v~~~~~-------------------------------------------------------~~~~~---~~~~~~~~  157 (302)
                      .+++.+..+                                                       +..+.   -.+..++.
T Consensus       257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg  336 (1470)
T PLN03140        257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG  336 (1470)
T ss_pred             HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence            333322110                                                       00000   01234567


Q ss_pred             cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCH-HHHHhhccCCCeeee
Q psy2071         158 MTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDA-GKFQQYFDNAPLMNV  234 (302)
Q Consensus       158 lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~-~~~~~~~d~~~~l~i  234 (302)
                      +|||||||+.||++|+.+|++++|||   ||++||... ..+.+++++..+ .+.|+++++|+. +++.++||++++|+ 
T Consensus       337 lSGGerkRVsia~aL~~~p~vlllDE---PTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~-  412 (1470)
T PLN03140        337 ISGGQKKRVTTGEMIVGPTKTLFMDE---ISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS-  412 (1470)
T ss_pred             CCcccceeeeehhhhcCCCcEEEEeC---CCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee-
Confidence            99999999999999999999999999   999999877 667777776643 588999999985 68899999999998 


Q ss_pred             cCcC
Q psy2071         235 PGRT  238 (302)
Q Consensus       235 ~g~~  238 (302)
                      .|+.
T Consensus       413 ~G~i  416 (1470)
T PLN03140        413 EGQI  416 (1470)
T ss_pred             CceE
Confidence            6653

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.88  E-value=3.8e-24  Score=228.18  Aligned_cols=160  Identities=16%  Similarity=0.153  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.    ++...+...   .+..++.+|+.+...+
T Consensus       653 ~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~----i~yv~Q~~~---l~~~Ti~eNI~~g~~~  725 (1522)
T TIGR00957       653 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS----VAYVPQQAW---IQNDSLRENILFGKAL  725 (1522)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCE----EEEEcCCcc---ccCCcHHHHhhcCCcc
Confidence            588999999999999999999999999999999999999999988652    111111100   1122333333322110


Q ss_pred             ------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071         146 ------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV  201 (302)
Q Consensus       146 ------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l  201 (302)
                                        ...     .........||||||||++||||++.+|+++||||   |++++|... ..+.+.
T Consensus       726 ~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDE---p~saLD~~~~~~i~~~  802 (1522)
T TIGR00957       726 NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD---PLSAVDAHVGKHIFEH  802 (1522)
T ss_pred             CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcC---CccccCHHHHHHHHHH
Confidence                              000     01123345699999999999999999999999999   999999877 555555


Q ss_pred             HHHc--CCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         202 IKQR--ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       202 l~~~--~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +...  ...+.|+|++||+.+.+.. ||++++|+ .|+
T Consensus       803 l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~-~G~  838 (1522)
T TIGR00957       803 VIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMS-GGK  838 (1522)
T ss_pred             HhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEec-CCe
Confidence            4321  1236899999999998865 99999998 554

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0056|consensus

Probab=99.88  E-value=9.4e-24  Score=193.36  Aligned_cols=170  Identities=19%  Similarity=0.254  Sum_probs=132.3

Q ss_pred             ChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccc--cccce
Q psy2071          62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQ--LGQEV  139 (302)
Q Consensus        62 p~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v  139 (302)
                      |...+++||++.+.+|+.++|+||+|+||||+++++..++..++|.|.|+|++.+.+...++...+...+..+  ..+.+
T Consensus       549 p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI  628 (790)
T KOG0056|consen  549 PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTI  628 (790)
T ss_pred             CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeeccee
Confidence            4555689999999999999999999999999999999999999999999999998877766666655444333  33556


Q ss_pred             eeeeeecCCCCc------------------------cccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071         140 GYSIRFEDCSSP------------------------KTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT  191 (302)
Q Consensus       140 ~~~~~~~~~~~~------------------------~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l  191 (302)
                      .|.+++......                        ++++    -.||||+||||++||+++..|.+|+|||   .|+++
T Consensus       629 ~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDE---ATSAL  705 (790)
T KOG0056|consen  629 LYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDE---ATSAL  705 (790)
T ss_pred             eeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcc---hhhhc
Confidence            666655433211                        1111    2299999999999999999999999999   89999


Q ss_pred             HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         192 DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       192 D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      |... +.+...+.+......+|+ +.|.+..+- .+|.|.+++ .|+
T Consensus       706 DT~tER~IQaaL~rlca~RTtIV-vAHRLSTiv-nAD~ILvi~-~G~  749 (790)
T KOG0056|consen  706 DTNTERAIQAALARLCANRTTIV-VAHRLSTIV-NADLILVIS-NGR  749 (790)
T ss_pred             CCccHHHHHHHHHHHhcCCceEE-Eeeeehhee-cccEEEEEe-CCe
Confidence            9666 778887777766555555 578887765 578888888 554

>PLN03130 ABC transporter C family member; Provisional

Probab=99.88  E-value=8.4e-24  Score=225.74  Aligned_cols=159  Identities=19%  Similarity=0.192  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccC-CCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSV-GAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR  144 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~-G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  144 (302)
                      .++++++.|++|+.++|+||+|||||||++.|+|+++|.+ |.+.+.+.    ++...+.   ...++.++.+|+.+.-.
T Consensus       632 vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~----Iayv~Q~---p~LfngTIreNI~fg~~  704 (1622)
T PLN03130        632 TLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGT----VAYVPQV---SWIFNATVRDNILFGSP  704 (1622)
T ss_pred             eeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCe----EEEEcCc---cccCCCCHHHHHhCCCc
Confidence            5889999999999999999999999999999999999999 88876431    1111111   11123344455444321


Q ss_pred             ec------------------CC-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H-HHH
Q psy2071         145 FE------------------DC-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G-VLK  199 (302)
Q Consensus       145 ~~------------------~~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~-~l~  199 (302)
                      ++                  .. ...+|.+    ..||||||||++||||+..+|+++||||   |++++|... . ++.
T Consensus       705 ~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDE---ptSALD~~~~~~I~~  781 (1622)
T PLN03130        705 FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDD---PLSALDAHVGRQVFD  781 (1622)
T ss_pred             ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECC---CccccCHHHHHHHHH
Confidence            11                  00 0112333    3599999999999999999999999999   999999776 3 445


Q ss_pred             HHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         200 EVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       200 ~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +++.... .+.|+|++||+++.+ ..||+|++|+ .|+
T Consensus       782 ~~l~~~l-~~kTvIlVTH~l~~l-~~aD~Ii~L~-~G~  816 (1622)
T PLN03130        782 KCIKDEL-RGKTRVLVTNQLHFL-SQVDRIILVH-EGM  816 (1622)
T ss_pred             HHhhHHh-cCCEEEEEECCHhHH-HhCCEEEEEe-CCE
Confidence            6655332 367999999999765 5799999998 554

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.88  E-value=3.3e-24  Score=168.72  Aligned_cols=161  Identities=15%  Similarity=0.131  Sum_probs=119.8

Q ss_pred             CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc---CCCEEEeecCchhhhH-HHH----HHHhhhhh
Q psy2071          60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS---VGAKAVACTQPRRVAA-MSV----AQRVSEEM  131 (302)
Q Consensus        60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~---~G~~~i~~~~~~~~~~-~~~----~~~~~~~~  131 (302)
                      .+|..-.+-+|+++|.+|||+.|.||+|||||||+.-+.|.+.+.   +|++.+++++.....+ ...    .+..-.++
T Consensus        11 ~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFp   90 (213)
T COG4136          11 RLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFP   90 (213)
T ss_pred             cCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccc
Confidence            456555667899999999999999999999999999999988765   4888888876433221 111    11112234


Q ss_pred             ccccccceeeeeeecCCC------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         132 DCQLGQEVGYSIRFEDCS------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       132 ~~~~~~~v~~~~~~~~~~------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      ..++++|+.+.+.-....                  ...+-...+||||+-|+++-|+|+..|+.++|||   |++.+|.
T Consensus        91 hlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDE---PFS~LD~  167 (213)
T COG4136          91 HLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDE---PFSRLDV  167 (213)
T ss_pred             ccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCC---chhHHHH
Confidence            567888887776322111                  1122345699999999999999999999999999   9999998


Q ss_pred             HH-HHHHHHHH-HcCCCcEEEEEEecCHHHHH
Q psy2071         194 LM-GVLKEVIK-QRADLKLVIMSATLDAGKFQ  223 (302)
Q Consensus       194 ~~-~~l~~ll~-~~~~~~~~ii~~thd~~~~~  223 (302)
                      .+ ...++..- +....|+-.+.+|||.+.+.
T Consensus       168 ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp  199 (213)
T COG4136         168 ALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP  199 (213)
T ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence            77 66666653 55667888899999988765

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.87  E-value=7.1e-23  Score=176.23  Aligned_cols=81  Identities=6%  Similarity=0.009  Sum_probs=70.2

Q ss_pred             cccccccCHHHHHHHhccccCCC----------CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHH
Q psy2071         152 KTVLKYMTDGMLLREGMSDPMLE----------NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAG  220 (302)
Q Consensus       152 ~~~~~~lS~G~~qr~~la~al~~----------~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~  220 (302)
                      +..+..||+||+||+++|++++.          +|+++||||   |++++|+.. ..+.+++....+.+.|++++||+++
T Consensus       118 ~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDE---p~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~  194 (213)
T cd03279         118 ARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDE---GFGTLDPEALEAVATALELIRTENRMVGVISHVEE  194 (213)
T ss_pred             cCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeC---CcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH
Confidence            44567799999999999999974          678999999   999999877 7777888776655889999999999


Q ss_pred             HHHhhccCCCeeeecC
Q psy2071         221 KFQQYFDNAPLMNVPG  236 (302)
Q Consensus       221 ~~~~~~d~~~~l~i~g  236 (302)
                      .+..++|++.+++ .|
T Consensus       195 ~~~~~~~~i~~~~-~~  209 (213)
T cd03279         195 LKERIPQRLEVIK-TP  209 (213)
T ss_pred             HHHhhCcEEEEEe-cC
Confidence            9999999999998 44

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.87  E-value=1.1e-23  Score=224.33  Aligned_cols=160  Identities=19%  Similarity=0.199  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      .++++++.|++|+.++|+|++|||||||++.|+|+++|++|.+.....   .++...+.   ...++.++.+|+.+.-.+
T Consensus       632 vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~---~Iayv~Q~---p~Lf~gTIreNI~fg~~~  705 (1495)
T PLN03232        632 TLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRG---SVAYVPQV---SWIFNATVRENILFGSDF  705 (1495)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecC---cEEEEcCc---cccccccHHHHhhcCCcc
Confidence            589999999999999999999999999999999999999986532110   11111111   111233444444432211


Q ss_pred             c------------------CC-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H-HHHH
Q psy2071         146 E------------------DC-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G-VLKE  200 (302)
Q Consensus       146 ~------------------~~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~-~l~~  200 (302)
                      .                  .. ...++.+    ..||||||||++||||+..+|+++||||   |++++|... . ++.+
T Consensus       706 ~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDE---ptSaLD~~t~~~I~~~  782 (1495)
T PLN03232        706 ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDD---PLSALDAHVAHQVFDS  782 (1495)
T ss_pred             CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcC---CccccCHHHHHHHHHH
Confidence            0                  00 0112333    3599999999999999999999999999   999999776 3 4455


Q ss_pred             HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ++.... .+.|+|++||+++.+ ..||+|++|+ .|+
T Consensus       783 ~l~~~l-~~kT~IlvTH~~~~l-~~aD~Ii~L~-~G~  816 (1495)
T PLN03232        783 CMKDEL-KGKTRVLVTNQLHFL-PLMDRIILVS-EGM  816 (1495)
T ss_pred             Hhhhhh-cCCEEEEEECChhhH-HhCCEEEEEe-CCE
Confidence            555322 367999999999865 5799999998 554

>PTZ00243 ABC transporter; Provisional

Probab=99.87  E-value=1.3e-23  Score=223.86  Aligned_cols=159  Identities=18%  Similarity=0.156  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee-
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR-  144 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  144 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|.+.+.+    +++...+...   .+..++.+++.+... 
T Consensus       675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~----~i~yv~Q~~~---l~~~Tv~enI~~~~~~  747 (1560)
T PTZ00243        675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAER----SIAYVPQQAW---IMNATVRGNILFFDEE  747 (1560)
T ss_pred             eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC----eEEEEeCCCc---cCCCcHHHHHHcCChh
Confidence            57899999999999999999999999999999999999999886532    1111111000   011122222221100 


Q ss_pred             --------------------e--cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H-HHHH
Q psy2071         145 --------------------F--EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G-VLKE  200 (302)
Q Consensus       145 --------------------~--~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~-~l~~  200 (302)
                                          +  ............||||||||++||||++.+|+++||||   |++++|+.. . ++.+
T Consensus       748 ~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDE---P~saLD~~~~~~i~~~  824 (1560)
T PTZ00243        748 DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDD---PLSALDAHVGERVVEE  824 (1560)
T ss_pred             hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcC---ccccCCHHHHHHHHHH
Confidence                                0  00011133456799999999999999999999999999   999999865 4 3444


Q ss_pred             HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      ++.... .+.|+|++||+++.+ .+||++++|+ .|+
T Consensus       825 ~~~~~~-~~~TvIlvTH~~~~~-~~ad~ii~l~-~G~  858 (1560)
T PTZ00243        825 CFLGAL-AGKTRVLATHQVHVV-PRADYVVALG-DGR  858 (1560)
T ss_pred             HHHHhh-CCCEEEEEeCCHHHH-HhCCEEEEEE-CCE
Confidence            443222 378999999999988 5799999998 554

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional

Probab=99.86  E-value=2.3e-20  Score=187.30  Aligned_cols=188  Identities=39%  Similarity=0.609  Sum_probs=163.1

Q ss_pred             CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccce
Q psy2071          60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEV  139 (302)
Q Consensus        60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  139 (302)
                      .||++.++++|..++.+++.+++.|++||||||.+++.+.......|  .+.+.+|++..+..++.+++.+++..++..+
T Consensus         3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~--~ilvlqPrR~aA~qia~rva~~l~~~~g~~V   80 (812)
T PRK11664          3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGING--KIIMLEPRRLAARNVAQRLAEQLGEKPGETV   80 (812)
T ss_pred             CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCC--eEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence            49999999999999999999999999999999999876543222234  5677899999999999999988888899999


Q ss_pred             eeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHH-cCCCcEEEEEEecC
Q psy2071         140 GYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQ-RADLKLVIMSATLD  218 (302)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~-~~~~~~~ii~~thd  218 (302)
                      ||.++++.....++.+..++.|...+.......+.+.++||+||+|+++...|..+..+.++++. ..+.++++|++|.+
T Consensus        81 Gy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~  160 (812)
T PRK11664         81 GYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD  160 (812)
T ss_pred             EEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCC
Confidence            99999887777778899999999998877788899999999999999999999888777777664 34668999999999


Q ss_pred             HHHHHhhccCCCeeeecCcCCccceeecCCC
Q psy2071         219 AGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP  249 (302)
Q Consensus       219 ~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~~  249 (302)
                      .+.+.+|+....++.++|+.+|++.+|.+.+
T Consensus       161 ~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~  191 (812)
T PRK11664        161 NDRLQQLLPDAPVIVSEGRSFPVERRYQPLP  191 (812)
T ss_pred             HHHHHHhcCCCCEEEecCccccceEEeccCc
Confidence            9989999988889999999999999997643

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.85  E-value=2.1e-22  Score=172.07  Aligned_cols=160  Identities=19%  Similarity=0.139  Sum_probs=104.2

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhh----hcccccCCCEEEeecCch------hhhHHHHHH---Hhhhhhccccccce
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWC----VEYSKSVGAKAVACTQPR------RVAAMSVAQ---RVSEEMDCQLGQEV  139 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~----g~~~~~~G~~~i~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~v  139 (302)
                      .+.+| +++|+||||||||||+.+|.    |...|+.|.+........      .+.......   .+......++.+++
T Consensus        19 ~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~   97 (204)
T cd03240          19 EFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENV   97 (204)
T ss_pred             ecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhce
Confidence            34556 99999999999999999985    777776664431000000      000000000   00000111333444


Q ss_pred             eeeeeecCCCCccccccccCHHHHHH------HhccccCCCCCcEEEEcCCCCCCcchHHHH-H-HHHHHHHHcCCC-cE
Q psy2071         140 GYSIRFEDCSSPKTVLKYMTDGMLLR------EGMSDPMLENYQVILLDEAHERTLATDILM-G-VLKEVIKQRADL-KL  210 (302)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~lS~G~~qr------~~la~al~~~p~lliLDE~~~p~~~lD~~~-~-~l~~ll~~~~~~-~~  210 (302)
                      .+..........+..+..||+||+||      ++++++++.+|+++|+||   |+.++|+.. . .+.+++....+. +.
T Consensus        98 ~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE---P~~~LD~~~~~~~l~~~l~~~~~~~~~  174 (204)
T cd03240          98 IFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE---PTTNLDEENIEESLAEIIEERKSQKNF  174 (204)
T ss_pred             eeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC---CccccCHHHHHHHHHHHHHHHHhccCC
Confidence            33221111111244567899999996      689999999999999999   999999877 6 788888776554 78


Q ss_pred             EEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         211 VIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       211 ~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +++++||+.+.+ ..||+++.|.-.|+
T Consensus       175 ~iiiitH~~~~~-~~~d~i~~l~~~~~  200 (204)
T cd03240         175 QLIVITHDEELV-DAADHIYRVEKDGR  200 (204)
T ss_pred             EEEEEEecHHHH-hhCCEEEEEeeCCC
Confidence            999999999876 57999998875554

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB

Probab=99.85  E-value=1.4e-20  Score=188.59  Aligned_cols=186  Identities=35%  Similarity=0.549  Sum_probs=161.9

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccccccee
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVG  140 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  140 (302)
                      ||++.++++|...|..++.+.|.|++||||||.+++.+......  ...+.+.+|++..+..++.+++.+++..++..||
T Consensus         1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~--~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG   78 (819)
T TIGR01970         1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI--GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG   78 (819)
T ss_pred             CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc--CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence            79999999999999999999999999999999998875433212  2356778999999999999999888888899999


Q ss_pred             eeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHH-cCCCcEEEEEEecCH
Q psy2071         141 YSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQ-RADLKLVIMSATLDA  219 (302)
Q Consensus       141 ~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~-~~~~~~~ii~~thd~  219 (302)
                      |.+++......++.+..++.|...|.......+.+.++||+||+||++...|..+..+.++... ..+.++++|++|.+.
T Consensus        79 y~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~  158 (819)
T TIGR01970        79 YRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDG  158 (819)
T ss_pred             EEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCH
Confidence            9999987777778899999999999888888899999999999999998889877777776654 346689999999999


Q ss_pred             HHHHhhccCCCeeeecCcCCccceeecCC
Q psy2071         220 GKFQQYFDNAPLMNVPGRTHPVEIFYTPE  248 (302)
Q Consensus       220 ~~~~~~~d~~~~l~i~g~~~~~~~~~~~~  248 (302)
                      +.+.+|+....++.++|+.+|++++|.+.
T Consensus       159 ~~l~~~l~~~~vI~~~gr~~pVe~~y~~~  187 (819)
T TIGR01970       159 ERLSSLLPDAPVVESEGRSFPVEIRYLPL  187 (819)
T ss_pred             HHHHHHcCCCcEEEecCcceeeeeEEeec
Confidence            98999998889999999999999999764

This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.85  E-value=1e-23  Score=168.75  Aligned_cols=118  Identities=15%  Similarity=0.210  Sum_probs=81.0

Q ss_pred             HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh---h----hhccccccc---
Q psy2071          69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS---E----EMDCQLGQE---  138 (302)
Q Consensus        69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~---  138 (302)
                      ++++.|++|++++|+|+||||||||+++|+|.++|++|.+.+++.+............+.   +    ....++.++   
T Consensus         3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~   82 (137)
T PF00005_consen    3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESD   82 (137)
T ss_dssp             EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHH
T ss_pred             ceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            456678999999999999999999999999999999999999987665422222222111   1    111122221   


Q ss_pred             --eeeeee-ecCCCCcccc----ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071         139 --VGYSIR-FEDCSSPKTV----LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL  189 (302)
Q Consensus       139 --v~~~~~-~~~~~~~~~~----~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~  189 (302)
                        +...+. +......++.    ...||+||+||++||+||+.+|++|||||   ||+
T Consensus        83 ~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDE---Pt~  137 (137)
T PF00005_consen   83 ERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDE---PTN  137 (137)
T ss_dssp             HHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEES---TTT
T ss_pred             ccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeC---CCC
Confidence              000000 0001112233    38899999999999999999999999999   874

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG0061|consensus

Probab=99.85  E-value=7.1e-23  Score=200.49  Aligned_cols=171  Identities=15%  Similarity=0.174  Sum_probs=129.7

Q ss_pred             hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc---cCCCEEEeecCchhhhHHHHHHHhhh----hhcccc
Q psy2071          63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK---SVGAKAVACTQPRRVAAMSVAQRVSE----EMDCQL  135 (302)
Q Consensus        63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~---~~G~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~  135 (302)
                      ...++++|+-.+++||+.||+||+|||||||+++++|....   .+|.+.++|.............++.+    ....|+
T Consensus        42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV  121 (613)
T KOG0061|consen   42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV  121 (613)
T ss_pred             cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence            45578999999999999999999999999999999998864   56999999954433322222233322    234556


Q ss_pred             ccceeeeeeecCC----------------------CCcccccc-----ccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         136 GQEVGYSIRFEDC----------------------SSPKTVLK-----YMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       136 ~~~v~~~~~~~~~----------------------~~~~~~~~-----~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      .+.+.|...+...                      .-.++.+.     -+|||||+|+++|.-++.+|.+|++||   ||
T Consensus       122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDE---PT  198 (613)
T KOG0061|consen  122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDE---PT  198 (613)
T ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecC---CC
Confidence            6655554422211                      11334443     499999999999999999999999999   99


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCH-HHHHhhccCCCeeeecCc
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDA-GKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~-~~~~~~~d~~~~l~i~g~  237 (302)
                      +|+|... ..+.++++++...|.|||++-|.. .++.+++|++++|. .|+
T Consensus       199 SGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs-~G~  248 (613)
T KOG0061|consen  199 SGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLS-EGE  248 (613)
T ss_pred             CCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhc-CCc
Confidence            9999777 667778887766699999988976 57889999999998 664

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.84  E-value=7.3e-22  Score=173.26  Aligned_cols=78  Identities=14%  Similarity=0.141  Sum_probs=66.0

Q ss_pred             cccccccCHHHHHHHhccccCC----CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhc
Q psy2071         152 KTVLKYMTDGMLLREGMSDPML----ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYF  226 (302)
Q Consensus       152 ~~~~~~lS~G~~qr~~la~al~----~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~  226 (302)
                      +.....||+||+||++||++++    .+|+++|+||   |++++|+.. ..+.+.+.+..+ +.+++++||+.+ +.++|
T Consensus       153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDE---p~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~-~~~~~  227 (243)
T cd03272         153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDE---IDAALDAQYRTAVANMIKELSD-GAQFITTTFRPE-LLEVA  227 (243)
T ss_pred             cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEEC---CccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHhhC
Confidence            3566789999999999999996    3689999999   999999887 777888877655 678888888855 67899


Q ss_pred             cCCCeeee
Q psy2071         227 DNAPLMNV  234 (302)
Q Consensus       227 d~~~~l~i  234 (302)
                      |++++|..
T Consensus       228 d~i~~l~~  235 (243)
T cd03272         228 DKFYGVKF  235 (243)
T ss_pred             CEEEEEEE
Confidence            99999984

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1e-21  Score=177.51  Aligned_cols=171  Identities=16%  Similarity=0.203  Sum_probs=126.3

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhh------hccc
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEE------MDCQ  134 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~------~~~~  134 (302)
                      .|....+.++++.+..|+.++++|++|+||||+++.+...+.+.+|.|.++|++.+.....++...+...      ++.+
T Consensus       273 ~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDt  352 (497)
T COG5265         273 DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDT  352 (497)
T ss_pred             cccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhh
Confidence            3555678999999999999999999999999999999999999999999999987765544444333222      2233


Q ss_pred             cccceeeeeeecC--------------------CCCccc----cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071         135 LGQEVGYSIRFED--------------------CSSPKT----VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA  190 (302)
Q Consensus       135 ~~~~v~~~~~~~~--------------------~~~~~~----~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~  190 (302)
                      ...++.|.-..-.                    ....++    +--.||||+|||+++||+++.+|+++++||   .|++
T Consensus       353 i~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~de---atsa  429 (497)
T COG5265         353 IAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDE---ATSA  429 (497)
T ss_pred             HHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEeh---hhhH
Confidence            3344444321000                    001122    223399999999999999999999999999   8999


Q ss_pred             hHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         191 TDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       191 lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +|... +.+..-++.... +.|-+++.|-+..+. -+|.++||+ .|+
T Consensus       430 ldt~te~~iq~~l~~~~~-~rttlviahrlsti~-~adeiivl~-~g~  474 (497)
T COG5265         430 LDTHTEQAIQAALREVSA-GRTTLVIAHRLSTII-DADEIIVLD-NGR  474 (497)
T ss_pred             hhhhHHHHHHHHHHHHhC-CCeEEEEeehhhhcc-CCceEEEee-CCE
Confidence            99877 667777776554 445555589888775 478999998 665

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.84  E-value=1.3e-21  Score=157.81  Aligned_cols=164  Identities=17%  Similarity=0.170  Sum_probs=119.1

Q ss_pred             HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh----hhcccccccee-
Q psy2071          69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE----EMDCQLGQEVG-  140 (302)
Q Consensus        69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~v~-  140 (302)
                      .++..+..|+++-+|||||||||||+-.++|+. |.+|+|.+.|.+....+...+++.   .++    .+.+.+...+. 
T Consensus        17 plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L   95 (248)
T COG4138          17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTL   95 (248)
T ss_pred             ccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhh
Confidence            346678999999999999999999999999986 578999999987654443333321   111    11112221111 


Q ss_pred             ------------eeeeec-CCCCccccccccCHHHHHHHhccccCCC-------CCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         141 ------------YSIRFE-DCSSPKTVLKYMTDGMLLREGMSDPMLE-------NYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       141 ------------~~~~~~-~~~~~~~~~~~lS~G~~qr~~la~al~~-------~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                                  +..+.- ......+.+..||||+-|||-+|...+.       ..+++|+||   |.+++|... ..+.
T Consensus        96 ~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDE---P~~~LDvAQ~~aLd  172 (248)
T COG4138          96 HQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDE---PMNSLDVAQQSALD  172 (248)
T ss_pred             cCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecC---CCcchhHHHHHHHH
Confidence                        111110 1112334567799999999999876543       346899999   999999887 6678


Q ss_pred             HHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         200 EVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       200 ~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      .++......|.+||+++||++--.+.+|++++++ .|.
T Consensus       173 rll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~-rG~  209 (248)
T COG4138         173 RLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLK-RGK  209 (248)
T ss_pred             HHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHh-cCe
Confidence            8888888889999999999999999999999988 554

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.83  E-value=3.2e-21  Score=169.83  Aligned_cols=78  Identities=14%  Similarity=0.099  Sum_probs=69.0

Q ss_pred             cccccccCHHHHHHHhccccCCCC---CcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         152 KTVLKYMTDGMLLREGMSDPMLEN---YQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       152 ~~~~~~lS~G~~qr~~la~al~~~---p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                      +.....||+||+||++||++|+.+   |+++||||   |++++|+.. ..+.+++....+.|.|++++||+++.+. .||
T Consensus       164 ~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDE---PtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD  239 (261)
T cd03271         164 GQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDE---PTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CAD  239 (261)
T ss_pred             cCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEEC---CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCC
Confidence            456778999999999999999996   79999999   999999887 7788888876666889999999999885 799


Q ss_pred             CCCeee
Q psy2071         228 NAPLMN  233 (302)
Q Consensus       228 ~~~~l~  233 (302)
                      +++.|.
T Consensus       240 ~ii~Lg  245 (261)
T cd03271         240 WIIDLG  245 (261)
T ss_pred             EEEEec
Confidence            999995

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.83  E-value=1.2e-20  Score=161.98  Aligned_cols=77  Identities=13%  Similarity=0.124  Sum_probs=65.2

Q ss_pred             cccccccCHHHHHHHhccccCCC----CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhc
Q psy2071         152 KTVLKYMTDGMLLREGMSDPMLE----NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYF  226 (302)
Q Consensus       152 ~~~~~~lS~G~~qr~~la~al~~----~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~  226 (302)
                      ++.+..+|+||+||+++|++++.    .|+++|+||   |+.++|+.. ..+.+++.+..+ +.+++++||+ +++.++|
T Consensus       122 ~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDE---Pt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~-~~~~~~~  196 (212)
T cd03274         122 WKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDE---IDAALDFRNVSIVANYIKERTK-NAQFIVISLR-NNMFELA  196 (212)
T ss_pred             ccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcC---CCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECc-HHHHHhC
Confidence            45567799999999999999963    579999999   999999887 788888887754 5677778898 4677899


Q ss_pred             cCCCeee
Q psy2071         227 DNAPLMN  233 (302)
Q Consensus       227 d~~~~l~  233 (302)
                      |++.+|.
T Consensus       197 d~v~~~~  203 (212)
T cd03274         197 DRLVGIY  203 (212)
T ss_pred             CEEEEEE
Confidence            9999997

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.82  E-value=8.3e-22  Score=176.69  Aligned_cols=181  Identities=18%  Similarity=0.154  Sum_probs=125.9

Q ss_pred             HHHHhhcCCChh-HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh---hhHHHHHHHhh
Q psy2071          53 ELHRKRITLPVF-EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR---VAAMSVAQRVS  128 (302)
Q Consensus        53 ~l~~~r~~lp~~-~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~---~~~~~~~~~~~  128 (302)
                      |+.+.|..++.. =.+..|+..|++||++-|+|.|||||||+++.+.|++.|++|+|.++|.....   -.+..+...+.
T Consensus       324 elrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavF  403 (546)
T COG4615         324 ELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVF  403 (546)
T ss_pred             eeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHh
Confidence            445666666543 23677899999999999999999999999999999999999999999976421   12222222221


Q ss_pred             hh---hccccc-------cceeeeee-ec--CCC---CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071         129 EE---MDCQLG-------QEVGYSIR-FE--DCS---SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD  192 (302)
Q Consensus       129 ~~---~~~~~~-------~~v~~~~~-~~--~~~---~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD  192 (302)
                      ..   ++...+       +.+...++ .+  ...   ..+-....||.|||+|+++.-|++.+-+++++||   -....|
T Consensus       404 sDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DE---WAADQD  480 (546)
T COG4615         404 SDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDE---WAADQD  480 (546)
T ss_pred             hhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeeh---hhccCC
Confidence            11   111111       11111111 00  000   0111224599999999999999999999999999   788899


Q ss_pred             HHH-HH-HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         193 ILM-GV-LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       193 ~~~-~~-l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |.. +. -..++...+++|+||+.+|||-.-+ ..+||...+. .|+.
T Consensus       481 PaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF-~~ADrll~~~-~G~~  526 (546)
T COG4615         481 PAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-IHADRLLEMR-NGQL  526 (546)
T ss_pred             hHHHHHHHHHHhHHHHHhCCeEEEEecCchhh-hhHHHHHHHh-cCce
Confidence            988 43 4556667888899999999996554 5789988888 7764

>KOG0054|consensus

Probab=99.82  E-value=2.7e-21  Score=198.76  Aligned_cols=160  Identities=17%  Similarity=0.213  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      .++||++.|++|+.++|+|+.|||||+||.+|+|..+..+|.+.+.|.    +++..+.   +-.++.++++|+.|.-.+
T Consensus       536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----iaYv~Q~---pWI~ngTvreNILFG~~~  608 (1381)
T KOG0054|consen  536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----VAYVPQQ---PWIQNGTVRENILFGSPY  608 (1381)
T ss_pred             cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----EEEeccc---cHhhCCcHHHhhhcCccc
Confidence            589999999999999999999999999999999999999999999886    2222221   223456777777766544


Q ss_pred             cCCC-------------------Cccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHH
Q psy2071         146 EDCS-------------------SPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKE  200 (302)
Q Consensus       146 ~~~~-------------------~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~  200 (302)
                      +...                   ...|.+    -+||||||||++||||+-.+.|+++||.   |.+++|...  .++.+
T Consensus       609 d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDD---plSAVDahvg~~if~~  685 (1381)
T KOG0054|consen  609 DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDD---PLSAVDAHVGKHIFEE  685 (1381)
T ss_pred             cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcC---cchhhhHhhhHHHHHH
Confidence            3211                   112323    3499999999999999999999999999   999999666  55666


Q ss_pred             HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .+... -.++|+|.+||.++.+ ..||.|++|+ .|+.
T Consensus       686 ci~~~-L~~KT~ILVTHql~~L-~~ad~Iivl~-~G~I  720 (1381)
T KOG0054|consen  686 CIRGL-LRGKTVILVTHQLQFL-PHADQIIVLK-DGKI  720 (1381)
T ss_pred             HHHhh-hcCCEEEEEeCchhhh-hhCCEEEEec-CCeE
Confidence            66432 2368999999987755 5799999999 6654

>KOG0054|consensus

Probab=99.81  E-value=5.9e-21  Score=196.31  Aligned_cols=173  Identities=14%  Similarity=0.198  Sum_probs=133.3

Q ss_pred             hcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhh------
Q psy2071          58 RITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEM------  131 (302)
Q Consensus        58 r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~------  131 (302)
                      |..+|.  ++++|++.|++||-+||+|.+|||||||+.++..+..|.+|.|.|+|.+...++-..+..++.-.+      
T Consensus      1149 rp~lp~--VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLF 1226 (1381)
T KOG0054|consen 1149 RPNLPL--VLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLF 1226 (1381)
T ss_pred             CCCCcc--hhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCcee
Confidence            445555  589999999999999999999999999999999999999999999999987777666655543322      


Q ss_pred             ccccccceeeeeeecC------------------C-CCcccc----ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071         132 DCQLGQEVGYSIRFED------------------C-SSPKTV----LKYMTDGMLLREGMSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       132 ~~~~~~~v~~~~~~~~------------------~-~~~~~~----~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~  188 (302)
                      ..|++.|+--.-++.+                  . ...+..    -.++|-||||.++|||||+.+.++|+|||   .|
T Consensus      1227 sGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDE---AT 1303 (1381)
T KOG0054|consen 1227 SGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDE---AT 1303 (1381)
T ss_pred             cCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEec---cc
Confidence            2233333221110000                  0 001111    24599999999999999999999999999   89


Q ss_pred             cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ++.|+.. .++++.++..=+ +.||+.+-|.++.+.+ ||+|.||+ .|+.
T Consensus      1304 AsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~TVmd-~DrVlVld-~G~v 1351 (1381)
T KOG0054|consen 1304 ASVDPETDALIQKTIREEFK-DCTVLTIAHRLNTVMD-SDRVLVLD-AGRV 1351 (1381)
T ss_pred             ccCChHHHHHHHHHHHHHhc-CCeEEEEeeccchhhh-cCeEEEee-CCeE
Confidence            9999988 788888875322 5899999999999986 79999999 6664

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.81  E-value=5.2e-21  Score=174.33  Aligned_cols=155  Identities=16%  Similarity=0.189  Sum_probs=106.7

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccCCC---EEEeecCchhhhH---HHHHHHh---hh--hhccccccceee
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGA---KAVACTQPRRVAA---MSVAQRV---SE--EMDCQLGQEVGY  141 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~---~~i~~~~~~~~~~---~~~~~~~---~~--~~~~~~~~~v~~  141 (302)
                      .|..||+++++||||-||||++++|+|.++|++|.   +.+.= .|..+..   .++.+.+   ..  ........++.-
T Consensus       363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSy-KPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~  441 (591)
T COG1245         363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSY-KPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVK  441 (591)
T ss_pred             eeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEee-cceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcC
Confidence            45678899999999999999999999999999995   11110 1111110   0000000   00  111111122222


Q ss_pred             eeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc-CCCcEEEEEEecCH
Q psy2071         142 SIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR-ADLKLVIMSATLDA  219 (302)
Q Consensus       142 ~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~  219 (302)
                      .+..+  ...++.+..||||++||+++|.+|..+.++.+|||   |++.||... -.+.+.+++. .+.+.|.+++.||+
T Consensus       442 pl~l~--~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDE---PSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi  516 (591)
T COG1245         442 PLNLE--DLLERPVDELSGGELQRVAIAAALSREADLYLLDE---PSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI  516 (591)
T ss_pred             ccchH--HHHhcccccCCchhHHHHHHHHHhccccCEEEecC---chhhccHHHHHHHHHHHHHHHhhcCceEEEEecce
Confidence            22222  22456788999999999999999999999999999   999999766 3445555543 23478899999999


Q ss_pred             HHHHhhccCCCeee
Q psy2071         220 GKFQQYFDNAPLMN  233 (302)
Q Consensus       220 ~~~~~~~d~~~~l~  233 (302)
                      -.+.-++|+++++.
T Consensus       517 ~~~dyvsDr~ivF~  530 (591)
T COG1245         517 YMIDYVSDRLIVFE  530 (591)
T ss_pred             ehhhhhhceEEEEe
Confidence            99999999999987

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.81  E-value=8.6e-21  Score=177.86  Aligned_cols=174  Identities=16%  Similarity=0.176  Sum_probs=134.8

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-HHH---HHh-------hh
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-SVA---QRV-------SE  129 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-~~~---~~~-------~~  129 (302)
                      +..+...+++++.+.+|||++|.|-=|||+|-+++.|.|..++.+|++.++|......... .+.   .++       ..
T Consensus       269 l~~~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl  348 (500)
T COG1129         269 LSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGL  348 (500)
T ss_pred             CCCCCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcC
Confidence            4444457899999999999999999999999999999999889999999999754322111 000   011       11


Q ss_pred             hhccccccceeeee--e----------------------ec-CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCC
Q psy2071         130 EMDCQLGQEVGYSI--R----------------------FE-DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEA  184 (302)
Q Consensus       130 ~~~~~~~~~v~~~~--~----------------------~~-~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~  184 (302)
                      .+..++.+|+....  +                      +. .....+..+..||||.+||+.||+.|+.+|++||||| 
T Consensus       349 ~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDE-  427 (500)
T COG1129         349 VLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDE-  427 (500)
T ss_pred             cCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECC-
Confidence            22334444443331  0                      00 0112345677799999999999999999999999999 


Q ss_pred             CCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         185 HERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       185 ~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                        ||.|.|.-. ..+.++++++.+.|++|+++|-+++++..+||||.||+ .|+.
T Consensus       428 --PTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~-~Gri  479 (500)
T COG1129         428 --PTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMR-EGRI  479 (500)
T ss_pred             --CCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEE-CCEE
Confidence              999999888 78999999988889999999999999999999999999 7775

>KOG0927|consensus

Probab=99.81  E-value=1.3e-20  Score=174.87  Aligned_cols=163  Identities=17%  Similarity=0.148  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC-chhhhH---------HHHHHHhhhhhc-c
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ-PRRVAA---------MSVAQRVSEEMD-C  133 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~-~~~~~~---------~~~~~~~~~~~~-~  133 (302)
                      ...+++++.|+.++.+++||||||||||||++++|++.|+.|.+.-.-.. ..+...         .....++...+. .
T Consensus       404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~  483 (614)
T KOG0927|consen  404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDE  483 (614)
T ss_pred             hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhcccc
Confidence            45688899999999999999999999999999999999999976432111 000000         000011111111 1


Q ss_pred             ccccceeeee-eecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcE
Q psy2071         134 QLGQEVGYSI-RFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKL  210 (302)
Q Consensus       134 ~~~~~v~~~~-~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~  210 (302)
                      +..+.+.-.+ ++... ......+..||+|||.||.+|+.++.+|.+|+|||   ||+++|.-. ..+.+.++...   -
T Consensus       484 ~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDE---PtnhLDi~tid~laeaiNe~~---G  557 (614)
T KOG0927|consen  484 KELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDE---PTNHLDIETIDALAEAINEFP---G  557 (614)
T ss_pred             chHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecC---CCcCCCchhHHHHHHHHhccC---C
Confidence            1111111111 22211 23346788999999999999999999999999999   999999655 78888887653   3


Q ss_pred             EEEEEecCHHHHHhhccCCCeee
Q psy2071         211 VIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       211 ~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      ++|.+|||+-.+.++++++++..
T Consensus       558 gvv~vSHDfrlI~qVaeEi~~c~  580 (614)
T KOG0927|consen  558 GVVLVSHDFRLISQVAEEIWVCE  580 (614)
T ss_pred             ceeeeechhhHHHHHHHHhHhhc
Confidence            67778999999999999999887

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.80  E-value=1.7e-20  Score=165.50  Aligned_cols=76  Identities=14%  Similarity=0.069  Sum_probs=64.2

Q ss_pred             ccccccCHHHHHHHhccccCC----CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         153 TVLKYMTDGMLLREGMSDPML----ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       153 ~~~~~lS~G~~qr~~la~al~----~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                      ..+..||+||+||+++|++++    .+|+++|+||   |++++|+.. ..+.+++....+ +.++|++||+ .++.+.||
T Consensus       162 ~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDE---Pt~~ld~~~~~~~~~~l~~~~~-g~~ii~iSH~-~~~~~~~d  236 (251)
T cd03273         162 ESLTELSGGQRSLVALSLILALLLFKPAPMYILDE---VDAALDLSHTQNIGRMIKTHFK-GSQFIVVSLK-EGMFNNAN  236 (251)
T ss_pred             ccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeC---CCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECC-HHHHHhCC
Confidence            456779999999999999987    5789999999   999999877 777788876644 7899999999 55666899


Q ss_pred             CCCeee
Q psy2071         228 NAPLMN  233 (302)
Q Consensus       228 ~~~~l~  233 (302)
                      +++-+.
T Consensus       237 ~v~~~~  242 (251)
T cd03273         237 VLFRTR  242 (251)
T ss_pred             EEEEEE
Confidence            997776

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0062|consensus

Probab=99.80  E-value=5.7e-21  Score=176.29  Aligned_cols=157  Identities=16%  Similarity=0.188  Sum_probs=108.6

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC-------chh-h----hHHHHHHHhhhhh
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ-------PRR-V----AAMSVAQRVSEEM  131 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~-------~~~-~----~~~~~~~~~~~~~  131 (302)
                      ..++.+-+..+..|.-+||+|+||+||||||++|+-      |.+.....+       ... .    +.......+..+.
T Consensus        93 k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~  166 (582)
T KOG0062|consen   93 KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEK  166 (582)
T ss_pred             hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhh
Confidence            345666678889999999999999999999999975      222222211       000 0    0011111222221


Q ss_pred             ccccc-------cceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071         132 DCQLG-------QEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK  203 (302)
Q Consensus       132 ~~~~~-------~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~  203 (302)
                      ....+       ..+.+.+.|.. .........||||-|.|++|||||..+||+|+|||   ||+.||... ..|.+.+.
T Consensus       167 ~l~~~~~l~ei~~~~L~glGFt~-emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDE---PTNhLDv~av~WLe~yL~  242 (582)
T KOG0062|consen  167 ELLAGLTLEEIYDKILAGLGFTP-EMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDE---PTNHLDVVAVAWLENYLQ  242 (582)
T ss_pred             hhhccchHHHHHHHHHHhCCCCH-HHHhccccccCcchhhHHHHHHHHhcCCCEEeecC---CcccchhHHHHHHHHHHh
Confidence            11111       11222222211 23346778899999999999999999999999999   999999776 88888877


Q ss_pred             HcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         204 QRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       204 ~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      .+   ++|+++||||-+++...|..|+.++
T Consensus       243 t~---~~T~liVSHDr~FLn~V~tdIIH~~  269 (582)
T KOG0062|consen  243 TW---KITSLIVSHDRNFLNTVCTDIIHLE  269 (582)
T ss_pred             hC---CceEEEEeccHHHHHHHHHHHHHHh
Confidence            65   5899999999999999999888876

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.79  E-value=2.9e-19  Score=157.20  Aligned_cols=81  Identities=14%  Similarity=0.069  Sum_probs=68.6

Q ss_pred             ccccccCHHHHHHHhccccCCCC----CcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         153 TVLKYMTDGMLLREGMSDPMLEN----YQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       153 ~~~~~lS~G~~qr~~la~al~~~----p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                      +.+..||+||+||++||++++.+    |+++||||   |++++|+.. ..+.+++.+..+.+.+++++||+.+. ..+||
T Consensus       151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDE---Pt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~-~~~~d  226 (247)
T cd03275         151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDE---VDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEF-FSKAD  226 (247)
T ss_pred             hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEec---ccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHH-HhhCC
Confidence            44578999999999999999864    89999999   999999877 77788888776668899999999765 47899


Q ss_pred             CCCeeeecCc
Q psy2071         228 NAPLMNVPGR  237 (302)
Q Consensus       228 ~~~~l~i~g~  237 (302)
                      ++++|.-.+.
T Consensus       227 ~i~~~~~~~~  236 (247)
T cd03275         227 ALVGVYRDQE  236 (247)
T ss_pred             eEEEEEecCC
Confidence            9999984443

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0927|consensus

Probab=99.79  E-value=2e-20  Score=173.57  Aligned_cols=174  Identities=15%  Similarity=0.201  Sum_probs=118.7

Q ss_pred             HHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEe--e--cCchhhhHHH-------
Q psy2071          54 LHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA--C--TQPRRVAAMS-------  122 (302)
Q Consensus        54 l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~--~--~~~~~~~~~~-------  122 (302)
                      +.+....++.+...++..+.+..|+-+||+|+|||||||+|++|.|-..|..-.+.+.  .  ..+....++.       
T Consensus        78 ~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~  157 (614)
T KOG0927|consen   78 IESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETD  157 (614)
T ss_pred             eeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhH
Confidence            3444556666777889999999999999999999999999999999877755433221  1  1111111110       


Q ss_pred             --------HHHHhhhhhcc-------------------cccc---ceeeeeeecCCCCccccccccCHHHHHHHhccccC
Q psy2071         123 --------VAQRVSEEMDC-------------------QLGQ---EVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPM  172 (302)
Q Consensus       123 --------~~~~~~~~~~~-------------------~~~~---~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al  172 (302)
                              ....+......                   +...   ++...+.| ......+....||||++.|++|||+|
T Consensus       158 ~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf-~~~m~~k~~~~~SgGwrmR~aLAr~L  236 (614)
T KOG0927|consen  158 HERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGF-LSEMQDKKVKDLSGGWRMRAALARAL  236 (614)
T ss_pred             HHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCC-CHhHHHHHhhccCchHHHHHHHHHHH
Confidence                    00001000000                   0000   00000111 01123456677999999999999999


Q ss_pred             CCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         173 LENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       173 ~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      +.+|++|+|||   ||++||... ..|.+.+......  ++++++|+-+++-.+|.+|+.+.
T Consensus       237 f~kP~LLLLDE---PtnhLDleA~~wLee~L~k~d~~--~lVi~sh~QDfln~vCT~Ii~l~  293 (614)
T KOG0927|consen  237 FQKPDLLLLDE---PTNHLDLEAIVWLEEYLAKYDRI--ILVIVSHSQDFLNGVCTNIIHLD  293 (614)
T ss_pred             hcCCCEEEecC---CccCCCHHHHHHHHHHHHhccCc--eEEEEecchhhhhhHhhhhheec
Confidence            99999999999   999999877 7888888765432  78888999999999999999988

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.79  E-value=8.3e-21  Score=161.40  Aligned_cols=79  Identities=11%  Similarity=0.119  Sum_probs=66.8

Q ss_pred             ccccccccCHHHHHHHhccccC----CCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc-CC--CcEEEEEEecCHHHH
Q psy2071         151 PKTVLKYMTDGMLLREGMSDPM----LENYQVILLDEAHERTLATDILM-GVLKEVIKQR-AD--LKLVIMSATLDAGKF  222 (302)
Q Consensus       151 ~~~~~~~lS~G~~qr~~la~al----~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~-~~--~~~~ii~~thd~~~~  222 (302)
                      .++.+..||+||+||+++|+++    +.+|+++||||   |+.++|... ..+.+++... .+  .+.+|+++||+++.+
T Consensus       103 ~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDE---P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i  179 (198)
T cd03276         103 AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDE---FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGL  179 (198)
T ss_pred             cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecC---cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc
Confidence            3556788999999999999998    69999999999   999999877 6666766654 22  346899999999999


Q ss_pred             HhhccCCCeee
Q psy2071         223 QQYFDNAPLMN  233 (302)
Q Consensus       223 ~~~~d~~~~l~  233 (302)
                      .++ |+|.++.
T Consensus       180 ~~~-d~v~~~~  189 (198)
T cd03276         180 ASS-DDVKVFR  189 (198)
T ss_pred             ccc-cceeEEE
Confidence            886 9999998

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.78  E-value=5e-20  Score=175.95  Aligned_cols=159  Identities=16%  Similarity=0.176  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR  144 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  144 (302)
                      ..+++.++.+++|+.+.|.|+||||||||++.|+|+.+..+|.+.+-...    ....+.|+. ..+..+.++.+.|+-.
T Consensus       407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~----~~lflpQ~P-Y~p~GtLre~l~YP~~  481 (604)
T COG4178         407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADS----ALLFLPQRP-YLPQGTLREALCYPNA  481 (604)
T ss_pred             eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCC----ceEEecCCC-CCCCccHHHHHhCCCC
Confidence            35688999999999999999999999999999999999999987553111    001111111 1111233344444332


Q ss_pred             ecCC---------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHH
Q psy2071         145 FEDC---------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVI  202 (302)
Q Consensus       145 ~~~~---------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll  202 (302)
                      ....                     ...+.--..||+|||||+++||.++++|++++|||   -|+++|+.. ..+.+++
T Consensus       482 ~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDE---ATsALDe~~e~~l~q~l  558 (604)
T COG4178         482 APDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDE---ATSALDEETEDRLYQLL  558 (604)
T ss_pred             CCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEec---chhccChHHHHHHHHHH
Confidence            2110                     01111224599999999999999999999999999   899999887 6677777


Q ss_pred             HHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         203 KQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       203 ~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      +..- .++|||++.|.... ..+.++..-+.
T Consensus       559 ~~~l-p~~tvISV~Hr~tl-~~~h~~~l~l~  587 (604)
T COG4178         559 KEEL-PDATVISVGHRPTL-WNFHSRQLELL  587 (604)
T ss_pred             HhhC-CCCEEEEeccchhh-HHHHhhheeec
Confidence            6421 26899999997654 45666644443

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.78  E-value=1.6e-19  Score=153.88  Aligned_cols=144  Identities=16%  Similarity=0.187  Sum_probs=96.9

Q ss_pred             HHHHHHHhCC-EEEEEccCCCCccchhhhhh-hcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          69 EFMTLLAQNQ-CIVLVGETGSGKTTQIPQWC-VEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        69 ~i~~~i~~g~-i~~liG~nGsGKSTll~~i~-g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      ++++.+.+|+ +++|+||||||||||+++++ +.+.+..| .+...  ..               ......+.+..  .+
T Consensus        19 ~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~--~~---------------~~~~~~~~~~~--~l   79 (200)
T cd03280          19 PLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA--EG---------------SSLPVFENIFA--DI   79 (200)
T ss_pred             cceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc--cc---------------ccCcCccEEEE--ec
Confidence            4577888885 89999999999999999987 22222223 11100  00               00000011111  11


Q ss_pred             cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH-HHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071         146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL-KEVIKQRADLKLVIMSATLDAGKFQ  223 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l-~~ll~~~~~~~~~ii~~thd~~~~~  223 (302)
                      .........+..+|+||+|+..++++ +.+|+++|+||   |+.++|+.. ..+ ..+++...+.+.+++++||+ ..+.
T Consensus        80 g~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDE---p~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~-~~l~  154 (200)
T cd03280          80 GDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDE---LGSGTDPVEGAALAIAILEELLERGALVIATTHY-GELK  154 (200)
T ss_pred             CchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcC---CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH-HHHH
Confidence            11122344567899999999999877 48999999999   999999876 444 45666555558899999998 5577


Q ss_pred             hhccCCCeeeecCc
Q psy2071         224 QYFDNAPLMNVPGR  237 (302)
Q Consensus       224 ~~~d~~~~l~i~g~  237 (302)
                      .+||++.+|+ .|.
T Consensus       155 ~~~d~~~~l~-~g~  167 (200)
T cd03280         155 AYAYKREGVE-NAS  167 (200)
T ss_pred             HHHhcCCCeE-EEE
Confidence            8999999987 454

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG2355|consensus

Probab=99.74  E-value=5.7e-19  Score=146.04  Aligned_cols=168  Identities=20%  Similarity=0.237  Sum_probs=118.1

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHH---HHhhhhhccccc-------
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA---QRVSEEMDCQLG-------  136 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~-------  136 (302)
                      ..||+..++.|.-..++|.|||||||||++++|-.-...|.+.+.|..+.+-....-.   .++..++..++.       
T Consensus        30 ~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevpl  109 (291)
T KOG2355|consen   30 FFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPL  109 (291)
T ss_pred             EEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccc
Confidence            4678999999999999999999999999999997766667888888765441111000   001001100000       


Q ss_pred             ------cceeeeeeecCCC-----------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH
Q psy2071         137 ------QEVGYSIRFEDCS-----------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL  198 (302)
Q Consensus       137 ------~~v~~~~~~~~~~-----------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l  198 (302)
                            +..-+.+......           ...-++..+|.||++||.|+..|+...++|+|||   -|..+|.+. .-+
T Consensus       110 q~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDE---VTVDLDVlARadL  186 (291)
T KOG2355|consen  110 QGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDE---VTVDLDVLARADL  186 (291)
T ss_pred             cccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeee---eEeehHHHHHHHH
Confidence                  0000111111000           1122445699999999999999999999999999   899999888 667


Q ss_pred             HHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         199 KEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       199 ~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .++++.. ...|.||+.+||-.+-++.+..+++.|. .|+.
T Consensus       187 LeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~-~Gkl  226 (291)
T KOG2355|consen  187 LEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIK-SGKL  226 (291)
T ss_pred             HHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEec-CCee
Confidence            7777643 4458999999999999999999999888 6654

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.73  E-value=8.3e-18  Score=140.53  Aligned_cols=74  Identities=18%  Similarity=0.106  Sum_probs=63.4

Q ss_pred             ccCHHHHHHHhccccCC----CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCe
Q psy2071         157 YMTDGMLLREGMSDPML----ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPL  231 (302)
Q Consensus       157 ~lS~G~~qr~~la~al~----~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~  231 (302)
                      .||+||+||+++|++++    .+|+++|+||   |++++|+.. ..+.+++....+.+.+++++||+.+.+ ..+|+++.
T Consensus        94 ~LS~Ge~~r~~Laral~~~~~~~p~llilDE---p~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~-~~adrvi~  169 (178)
T cd03239          94 ILSGGEKSLSALALIFALQEIKPSPFYVLDE---IDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMF-ENADKLIG  169 (178)
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH-hhCCeEEE
Confidence            39999999999999985    7999999999   999999877 667777776555578999999998876 58999998


Q ss_pred             eee
Q psy2071         232 MNV  234 (302)
Q Consensus       232 l~i  234 (302)
                      +..
T Consensus       170 i~~  172 (178)
T cd03239         170 VLF  172 (178)
T ss_pred             EEE
Confidence            874

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.71  E-value=1.7e-18  Score=143.74  Aligned_cols=170  Identities=17%  Similarity=0.180  Sum_probs=113.8

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc----CCCEEEee-----cCchhhhHHHHHH---Hhhhhh
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS----VGAKAVAC-----TQPRRVAAMSVAQ---RVSEEM  131 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~----~G~~~i~~-----~~~~~~~~~~~~~---~~~~~~  131 (302)
                      .++.++++.++++||+-+|+|++|||||-.-+.|||..+-.    .....+..     ..|+... .-+..   .+++++
T Consensus        20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR-k~ig~~isMIFQeP   98 (330)
T COG4170          20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR-KLVGHNVSMIFQEP   98 (330)
T ss_pred             eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh-hhhccchhhhhcCc
Confidence            34678999999999999999999999999999999976421    11222222     1222110 00011   111111


Q ss_pred             ------ccccc----cceeeee-------eec--------------CCC---CccccccccCHHHHHHHhccccCCCCCc
Q psy2071         132 ------DCQLG----QEVGYSI-------RFE--------------DCS---SPKTVLKYMTDGMLLREGMSDPMLENYQ  177 (302)
Q Consensus       132 ------~~~~~----~~v~~~~-------~~~--------------~~~---~~~~~~~~lS~G~~qr~~la~al~~~p~  177 (302)
                            ..+++    +++-...       +|.              ...   .......+|+.|+=|+|+||.|++.+|+
T Consensus        99 ~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPr  178 (330)
T COG4170          99 QSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPR  178 (330)
T ss_pred             hhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCc
Confidence                  11111    1111000       010              000   0122345699999999999999999999


Q ss_pred             EEEEcCCCCCCcchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         178 VILLDEAHERTLATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       178 lliLDE~~~p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +||.||   ||+++++.. ..+..++...+ ..+.+|+.++||+..+.++||++.||. -|..
T Consensus       179 LLIADE---PTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlY-CGQ~  237 (330)
T COG4170         179 LLIADE---PTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLY-CGQT  237 (330)
T ss_pred             eEeccC---CCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEE-eccc
Confidence            999999   999999887 66777777654 458999999999999999999999998 5543

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.71  E-value=3.5e-18  Score=180.18  Aligned_cols=78  Identities=14%  Similarity=0.107  Sum_probs=69.5

Q ss_pred             cccccccCHHHHHHHhccccCC---CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         152 KTVLKYMTDGMLLREGMSDPML---ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       152 ~~~~~~lS~G~~qr~~la~al~---~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                      +..+..||+||+||++||++|+   .+|+++||||   |++++|+.. ..+.+++....+.|.|||++||+++.+ .+||
T Consensus       804 ~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDE---PTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aD  879 (1809)
T PRK00635        804 GRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDE---PTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVAD  879 (1809)
T ss_pred             cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeC---CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCC
Confidence            3455669999999999999997   6999999999   999999877 788888887766789999999999998 8999


Q ss_pred             CCCeee
Q psy2071         228 NAPLMN  233 (302)
Q Consensus       228 ~~~~l~  233 (302)
                      ++++|.
T Consensus       880 rVi~L~  885 (1809)
T PRK00635        880 YVLELG  885 (1809)
T ss_pred             EEEEEc
Confidence            999994

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.71  E-value=1.4e-17  Score=152.12  Aligned_cols=157  Identities=18%  Similarity=0.210  Sum_probs=104.3

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEE-----------EeecCchh---------hhHHHHHHHh---hhh
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKA-----------VACTQPRR---------VAAMSVAQRV---SEE  130 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~-----------i~~~~~~~---------~~~~~~~~~~---~~~  130 (302)
                      ..+|++++|+|+||-||||.+++++|.+.|.-|.-.           +.|+....         +.+..-.|++   ...
T Consensus        97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~  176 (591)
T COG1245          97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV  176 (591)
T ss_pred             CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence            469999999999999999999999999999888431           11111000         0000000011   000


Q ss_pred             hccccccce------e----eeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         131 MDCQLGQEV------G----YSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       131 ~~~~~~~~v------~----~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                      ...++++.+      |    +.-++......++.+..||||++||++||.+++.+.++.++||   |++-||.-. -...
T Consensus       177 ~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDE---psSyLDi~qRl~~a  253 (591)
T COG1245         177 VKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDE---PSSYLDIRQRLNAA  253 (591)
T ss_pred             hcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcC---CcccccHHHHHHHH
Confidence            001111100      0    0001111112355678899999999999999999999999999   999999766 3355


Q ss_pred             HHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         200 EVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       200 ~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      ++++.+.+.+..||++.||+..+.-++|-+.++.
T Consensus       254 r~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y  287 (591)
T COG1245         254 RVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY  287 (591)
T ss_pred             HHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence            6666655557899999999999999999887775

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.70  E-value=3.2e-18  Score=173.38  Aligned_cols=78  Identities=14%  Similarity=0.090  Sum_probs=68.9

Q ss_pred             cccccccCHHHHHHHhccccCCCCC---cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         152 KTVLKYMTDGMLLREGMSDPMLENY---QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       152 ~~~~~~lS~G~~qr~~la~al~~~p---~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                      +.....||+||+||+.||++|+.+|   +++||||   |+.++|+.. ..+.+++.++.+.|.|||++||+++.+. .||
T Consensus       825 ~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDE---PtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD  900 (943)
T PRK00349        825 GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDE---PTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TAD  900 (943)
T ss_pred             cCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEEC---CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCC
Confidence            3455679999999999999999999   9999999   999999877 7788888877666889999999999885 799


Q ss_pred             CCCeee
Q psy2071         228 NAPLMN  233 (302)
Q Consensus       228 ~~~~l~  233 (302)
                      +++.|.
T Consensus       901 ~ii~Lg  906 (943)
T PRK00349        901 WIIDLG  906 (943)
T ss_pred             EEEEec
Confidence            999995

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.70  E-value=1.2e-17  Score=137.54  Aligned_cols=130  Identities=14%  Similarity=0.092  Sum_probs=88.2

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccc-cceeeeeeecCCCCccc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLG-QEVGYSIRFEDCSSPKT  153 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~  153 (302)
                      .++.+++|+|||||||||++++++...-...|..... .+. +             .+..+. .++.+          -.
T Consensus        19 ~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~-~-------------~g~~~~~~~~~~----------i~   73 (162)
T cd03227          19 GEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV-K-------------AGCIVAAVSAEL----------IF   73 (162)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc-c-------------CCCcceeeEEEE----------eh
Confidence            3456999999999999999999876655444322210 000 0             000000 00000          00


Q ss_pred             cccccCHHHHHHHhccccCCC----CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccC
Q psy2071         154 VLKYMTDGMLLREGMSDPMLE----NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDN  228 (302)
Q Consensus       154 ~~~~lS~G~~qr~~la~al~~----~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~  228 (302)
                      ....+|+||++|++++++|+.    +|+++|+||   |+.++|+.. ..+.+.+.+....+.+++++||+.+.+. ++|+
T Consensus        74 ~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDE---p~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~  149 (162)
T cd03227          74 TRLQLSGGEKELSALALILALASLKPRPLYILDE---IDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE-LADK  149 (162)
T ss_pred             heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeC---CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hhhh
Confidence            112399999999999999976    789999999   999999877 5555555543222789999999999875 6899


Q ss_pred             CCeee
Q psy2071         229 APLMN  233 (302)
Q Consensus       229 ~~~l~  233 (302)
                      +..|.
T Consensus       150 ~~~l~  154 (162)
T cd03227         150 LIHIK  154 (162)
T ss_pred             EEEEE
Confidence            88887

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>KOG0062|consensus

Probab=99.69  E-value=1.4e-17  Score=154.06  Aligned_cols=169  Identities=17%  Similarity=0.140  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH----HHHHHh-------hhhhcc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM----SVAQRV-------SEEMDC  133 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~----~~~~~~-------~~~~~~  133 (302)
                      .++.+++..++.-.-++++|+||+||||+++++.+...|..|.+.+.....-...+.    .....+       ...++.
T Consensus       378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~  457 (582)
T KOG0062|consen  378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK  457 (582)
T ss_pred             hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCC
Confidence            577888888888899999999999999999999999999999776654321100000    000000       001111


Q ss_pred             ccccceeeeeeecCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcE
Q psy2071         134 QLGQEVGYSIRFEDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKL  210 (302)
Q Consensus       134 ~~~~~v~~~~~~~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~  210 (302)
                       ..+.+...+...+..  .....+..|||||+-||++|.....+|.+|+|||   ||+.||.-. +.|.+.++...   -
T Consensus       458 -~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDE---PTNhLD~dsl~AL~~Al~~F~---G  530 (582)
T KOG0062|consen  458 -TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDE---PTNHLDRDSLGALAKALKNFN---G  530 (582)
T ss_pred             -CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecC---CCccccHHHHHHHHHHHHhcC---C
Confidence             111111111011111  1222378899999999999999999999999999   999999654 66666665543   3


Q ss_pred             EEEEEecCHHHHHhhccCCCeeeecCcCCcc
Q psy2071         211 VIMSATLDAGKFQQYFDNAPLMNVPGRTHPV  241 (302)
Q Consensus       211 ~ii~~thd~~~~~~~~d~~~~l~i~g~~~~~  241 (302)
                      -|+++|||.+++...|+.++++. .|++.|.
T Consensus       531 GVv~VSHd~~fi~~~c~E~Wvve-~g~vt~i  560 (582)
T KOG0062|consen  531 GVVLVSHDEEFISSLCKELWVVE-DGKVTPI  560 (582)
T ss_pred             cEEEEECcHHHHhhcCceeEEEc-CCcEEee
Confidence            45666999999999999999999 8887774

>KOG0060|consensus

Probab=99.68  E-value=2e-17  Score=154.92  Aligned_cols=162  Identities=15%  Similarity=0.186  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +.+++++.|.+|+.+.|.||||||||+|++.+.|+.+...|.+..-...-. -....+.|+... ...+.++++-|+..-
T Consensus       450 lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~-~~lfflPQrPYm-t~GTLRdQvIYP~~~  527 (659)
T KOG0060|consen  450 LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP-KDLFFLPQRPYM-TLGTLRDQVIYPLKA  527 (659)
T ss_pred             eeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC-CceEEecCCCCc-cccchhheeeccCcc
Confidence            357799999999999999999999999999999999988886654321100 001111111111 112444555555311


Q ss_pred             -----------------------------cCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         146 -----------------------------EDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       146 -----------------------------~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                                                   ++..  ....-.+.||+|++||+++||-+.++|++-||||   -|+++|..
T Consensus       528 ~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE---~TSAv~~d  604 (659)
T KOG0060|consen  528 EDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDE---CTSAVTED  604 (659)
T ss_pred             ccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeec---hhhhccHH
Confidence                                         1111  1112335599999999999999999999999999   89999977


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      + ..+.+.+++   .|+|.++++|--..+. +-|  .++++.|++
T Consensus       605 vE~~~Yr~~r~---~giT~iSVgHRkSL~k-fHd--~~L~~~g~g  643 (659)
T KOG0060|consen  605 VEGALYRKCRE---MGITFISVGHRKSLWK-FHD--YVLRMDGRG  643 (659)
T ss_pred             HHHHHHHHHHH---cCCeEEEeccHHHHHh-hhh--EEEEecCCC
Confidence            7 667766554   4999999999876554 444  445556654

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.67  E-value=2.1e-17  Score=167.14  Aligned_cols=78  Identities=14%  Similarity=0.097  Sum_probs=68.6

Q ss_pred             cccccccCHHHHHHHhccccCCC---CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         152 KTVLKYMTDGMLLREGMSDPMLE---NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       152 ~~~~~~lS~G~~qr~~la~al~~---~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                      ++....||+||+||+.||++|+.   +|+++||||   |++++|+.. ..+.+++.++.+.|.|||++||+++.+. .||
T Consensus       823 ~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDE---PtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD  898 (924)
T TIGR00630       823 GQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDE---PTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TAD  898 (924)
T ss_pred             cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCC
Confidence            34567799999999999999997   599999999   999999887 7788888877666899999999999885 799


Q ss_pred             CCCeee
Q psy2071         228 NAPLMN  233 (302)
Q Consensus       228 ~~~~l~  233 (302)
                      ++++|.
T Consensus       899 ~ii~Lg  904 (924)
T TIGR00630       899 YIIDLG  904 (924)
T ss_pred             EEEEec
Confidence            999995

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0066|consensus

Probab=99.67  E-value=2.4e-17  Score=149.90  Aligned_cols=149  Identities=19%  Similarity=0.184  Sum_probs=97.9

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee--------cCch-h----hhHHHHHHHhhhhhcc
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC--------TQPR-R----VAAMSVAQRVSEEMDC  133 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~--------~~~~-~----~~~~~~~~~~~~~~~~  133 (302)
                      ...+.|-|.--..++|+||||.||||||+++.|.+.|..|+..-+.        +... .    .......++.+..+..
T Consensus       603 FkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq  682 (807)
T KOG0066|consen  603 FKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQ  682 (807)
T ss_pred             hhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChH
Confidence            4666777777788999999999999999999999999999543211        1100 0    0011111111111111


Q ss_pred             ccccceeeeeeecCCCCcc-ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEE
Q psy2071         134 QLGQEVGYSIRFEDCSSPK-TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLV  211 (302)
Q Consensus       134 ~~~~~v~~~~~~~~~~~~~-~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~  211 (302)
                      ..+..+|   +|....... -.+..|||||+-||++|---+..|++|||||   ||.++|+.. ..+.+.++.+.   -.
T Consensus       683 ~ARK~LG---~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDE---PTNNLDIESIDALaEAIney~---Gg  753 (807)
T KOG0066|consen  683 EARKQLG---TFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDE---PTNNLDIESIDALAEAINEYN---GG  753 (807)
T ss_pred             HHHHHhh---hhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecC---CCCCcchhhHHHHHHHHHhcc---Cc
Confidence            1111111   111111222 2567899999999999999999999999999   999999776 77778777663   35


Q ss_pred             EEEEecCHHHHHh
Q psy2071         212 IMSATLDAGKFQQ  224 (302)
Q Consensus       212 ii~~thd~~~~~~  224 (302)
                      ||++|||...+.+
T Consensus       754 Vi~VsHDeRLi~e  766 (807)
T KOG0066|consen  754 VIMVSHDERLIVE  766 (807)
T ss_pred             EEEEecccceeee
Confidence            6667999766544

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.66  E-value=1.4e-16  Score=136.90  Aligned_cols=78  Identities=12%  Similarity=-0.032  Sum_probs=62.4

Q ss_pred             cccccccCHHHHHHHhcc----ccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCC-c-EEEEEEecCHHHHHh
Q psy2071         152 KTVLKYMTDGMLLREGMS----DPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADL-K-LVIMSATLDAGKFQQ  224 (302)
Q Consensus       152 ~~~~~~lS~G~~qr~~la----~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~-~-~~ii~~thd~~~~~~  224 (302)
                      ...+..||+||+|++.++    ++++.+|+++|+||   |+.++|+.. ..+.+++....+. + .+++++||++....+
T Consensus       121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDE---P~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~  197 (213)
T cd03277         121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDE---INQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN  197 (213)
T ss_pred             ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEec---ccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence            345678999999998765    44578999999999   999999887 7777877765443 4 579999999999989


Q ss_pred             hccCCCee
Q psy2071         225 YFDNAPLM  232 (302)
Q Consensus       225 ~~d~~~~l  232 (302)
                      ++|++.++
T Consensus       198 ~~~~~~v~  205 (213)
T cd03277         198 YHEKMTVL  205 (213)
T ss_pred             ccCceEEE
Confidence            99876443

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.66  E-value=1.7e-16  Score=135.41  Aligned_cols=139  Identities=12%  Similarity=0.033  Sum_probs=88.0

Q ss_pred             HHHHHhCCEEEEEccCCCCccchhhhhhhcc-cccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCC
Q psy2071          71 MTLLAQNQCIVLVGETGSGKTTQIPQWCVEY-SKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCS  149 (302)
Q Consensus        71 ~~~i~~g~i~~liG~nGsGKSTll~~i~g~~-~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  149 (302)
                      +..+..|++++|+|||||||||+++++++.. ....|... .+..                ......+.+...  +....
T Consensus        23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-~~~~----------------~~i~~~dqi~~~--~~~~d   83 (202)
T cd03243          23 DINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-PAES----------------ASIPLVDRIFTR--IGAED   83 (202)
T ss_pred             eEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-cccc----------------cccCCcCEEEEE--ecCcc
Confidence            3455688999999999999999999998543 22333211 0000                000001111111  22222


Q ss_pred             CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H-HHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         150 SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G-VLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       150 ~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~-~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                      ........++.+++| +..+.+++.+|+++|+||   |+.++|+.. . .+..+++...+.+.++|++||+.+.+. .++
T Consensus        84 ~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDE---p~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~-~~~  158 (202)
T cd03243          84 SISDGRSTFMAELLE-LKEILSLATPRSLVLIDE---LGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELAD-LPE  158 (202)
T ss_pred             cccCCceeHHHHHHH-HHHHHHhccCCeEEEEec---CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHH-Hhh
Confidence            223344567777766 555567788999999999   999999875 3 345556655555789999999976654 677


Q ss_pred             CCCeee
Q psy2071         228 NAPLMN  233 (302)
Q Consensus       228 ~~~~l~  233 (302)
                      ++..+.
T Consensus       159 ~~~~l~  164 (202)
T cd03243         159 QVPGVK  164 (202)
T ss_pred             cCCCeE
Confidence            776665

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.65  E-value=8.2e-17  Score=148.77  Aligned_cols=171  Identities=12%  Similarity=0.154  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc-hhhhHHHHH----HHhhh-------hhcc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP-RRVAAMSVA----QRVSE-------EMDC  133 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~-~~~~~~~~~----~~~~~-------~~~~  133 (302)
                      .++++++.+.+|||++|.|-.|-|-+.|+..|+|+.++.+|.+.+.|.+. .+.......    .++..       .+..
T Consensus       273 ~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~  352 (501)
T COG3845         273 AVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDL  352 (501)
T ss_pred             eeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCc
Confidence            46789999999999999999999999999999999988889999999774 111111100    11111       1222


Q ss_pred             ccccceeeee--------------------------eecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071         134 QLGQEVGYSI--------------------------RFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE  186 (302)
Q Consensus       134 ~~~~~v~~~~--------------------------~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~  186 (302)
                      ++.+|+....                          +|+.. .....+...||||.+||+.+||-|..+|++||+.+   
T Consensus       353 sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~q---  429 (501)
T COG3845         353 SLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQ---  429 (501)
T ss_pred             cHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcC---
Confidence            3333322110                          11111 13345567799999999999999999999999999   


Q ss_pred             CCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcCCc
Q psy2071         187 RTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHP  240 (302)
Q Consensus       187 p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~~~  240 (302)
                      ||.|+|... +.+.+.+...++.|..|+.+|-|++++..+||++.+|+ .|+...
T Consensus       430 PTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~-~Gri~~  483 (501)
T COG3845         430 PTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIY-EGRIVG  483 (501)
T ss_pred             CCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeee-CCceec
Confidence            999999877 77777777777779999999999999999999999999 887643

>KOG0065|consensus

Probab=99.65  E-value=1.5e-17  Score=168.30  Aligned_cols=171  Identities=15%  Similarity=0.183  Sum_probs=122.7

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc--ccCCCEEEeecCchhhhHHHHHHHhh----hhhcccccc
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS--KSVGAKAVACTQPRRVAAMSVAQRVS----EEMDCQLGQ  137 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~--~~~G~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~  137 (302)
                      .+++++++=.+.+|-.++|+|+|||||||||+.|+|-..  ..+|++.|+|.+...........++.    .....++++
T Consensus       804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrE  883 (1391)
T KOG0065|consen  804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRE  883 (1391)
T ss_pred             eEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHH
Confidence            457889999999999999999999999999999998532  23478899887543221111111111    123345555


Q ss_pred             ceeeeeeec--CCC--------------------Cccccccc----cCHHHHHHHhccccCCCCC-cEEEEcCCCCCCcc
Q psy2071         138 EVGYSIRFE--DCS--------------------SPKTVLKY----MTDGMLLREGMSDPMLENY-QVILLDEAHERTLA  190 (302)
Q Consensus       138 ~v~~~~~~~--~~~--------------------~~~~~~~~----lS~G~~qr~~la~al~~~p-~lliLDE~~~p~~~  190 (302)
                      .+.|...+.  ...                    ..+..+..    ||.+||+|+.||--|+.+| .+|+|||   ||+|
T Consensus       884 SL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDE---PTSG  960 (1391)
T KOG0065|consen  884 SLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDE---PTSG  960 (1391)
T ss_pred             HHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecC---CCCC
Confidence            554433221  111                    11222233    9999999999999999999 8999999   9999


Q ss_pred             hHHHH-HHHHHHHHHcCCCcEEEEEEecCH-HHHHhhccCCCeeeecCc
Q psy2071         191 TDILM-GVLKEVIKQRADLKLVIMSATLDA-GKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       191 lD~~~-~~l~~ll~~~~~~~~~ii~~thd~-~~~~~~~d~~~~l~i~g~  237 (302)
                      ||... ..+.+++++..+.|.||+-+-|.. -.+.+.||++.+|+--|+
T Consensus       961 LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGq 1009 (1391)
T KOG0065|consen  961 LDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQ 1009 (1391)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCe
Confidence            99766 678888888888899999888866 457788999999984444

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.64  E-value=6.5e-16  Score=138.07  Aligned_cols=78  Identities=14%  Similarity=0.067  Sum_probs=64.0

Q ss_pred             ccccCHHHHHHHhccccCCC----CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCC
Q psy2071         155 LKYMTDGMLLREGMSDPMLE----NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNA  229 (302)
Q Consensus       155 ~~~lS~G~~qr~~la~al~~----~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~  229 (302)
                      ...||+||+||+++|++++.    +|+++|+||   |+.++|+.. ..+.+++..... +.+++++||+.+. ..+||++
T Consensus       168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDE---p~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~~-~~~~d~~  242 (276)
T cd03241         168 AKIASGGELSRLMLALKAILARKDAVPTLIFDE---IDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQV-AAMADNH  242 (276)
T ss_pred             hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEEC---CccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHHH-HHhcCcE
Confidence            34599999999999986543    999999999   999999877 677777776544 6799999999985 5799999


Q ss_pred             CeeeecCc
Q psy2071         230 PLMNVPGR  237 (302)
Q Consensus       230 ~~l~i~g~  237 (302)
                      ++|.-.+.
T Consensus       243 ~~l~~~~~  250 (276)
T cd03241         243 FLVEKEVE  250 (276)
T ss_pred             EEEEEecC
Confidence            98884443

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.64  E-value=2.5e-16  Score=136.10  Aligned_cols=138  Identities=19%  Similarity=0.160  Sum_probs=90.9

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-ccCCCEEEeecCchhhhHHHHHHHhhh-hhccccccceeeeee
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-KSVGAKAVACTQPRRVAAMSVAQRVSE-EMDCQLGQEVGYSIR  144 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-~~~G~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~  144 (302)
                      .+++++.+.++++++|.||||+||||++++++-..- ...|.                  .+.. .......+.+.  .+
T Consensus        20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~------------------~vpa~~~~~~~~~~il--~~   79 (222)
T cd03285          20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGC------------------FVPCDSADIPIVDCIL--AR   79 (222)
T ss_pred             EeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCC------------------CcCcccEEEeccceeE--ee
Confidence            466677778899999999999999999999863200 00010                  0000 00000111111  11


Q ss_pred             ecCCCCccccccccCHHHHHHHhccccC--CCCCcEEEEcCCCCC---CcchHHHHH--HHHHHHHHcCCCcEEEEEEec
Q psy2071         145 FEDCSSPKTVLKYMTDGMLLREGMSDPM--LENYQVILLDEAHER---TLATDILMG--VLKEVIKQRADLKLVIMSATL  217 (302)
Q Consensus       145 ~~~~~~~~~~~~~lS~G~~qr~~la~al--~~~p~lliLDE~~~p---~~~lD~~~~--~l~~ll~~~~~~~~~ii~~th  217 (302)
                      +.   ..+.....+|.|++++..+++++  +.+|+++||||   |   |+++|....  .+.+.+..  +.+.+++++||
T Consensus        80 ~~---l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDE---p~~gT~~lD~~~~~~~il~~l~~--~~~~~vlisTH  151 (222)
T cd03285          80 VG---ASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDE---LGRGTSTYDGFGLAWAIAEYIAT--QIKCFCLFATH  151 (222)
T ss_pred             ec---cccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEec---CcCCCChHHHHHHHHHHHHHHHh--cCCCeEEEEec
Confidence            11   12234677999999999999988  89999999999   8   888997652  22222222  34678999999


Q ss_pred             CHHHHHhhccCCCeee
Q psy2071         218 DAGKFQQYFDNAPLMN  233 (302)
Q Consensus       218 d~~~~~~~~d~~~~l~  233 (302)
                      + .++.++||++..++
T Consensus       152 ~-~el~~~~~~~~~i~  166 (222)
T cd03285         152 F-HELTALADEVPNVK  166 (222)
T ss_pred             h-HHHHHHhhcCCCeE
Confidence            5 77889999998876

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.64  E-value=6.5e-17  Score=146.26  Aligned_cols=163  Identities=17%  Similarity=0.205  Sum_probs=111.2

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc--------ccccCCCEEEeecCch---------hhhHHHHHHH
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE--------YSKSVGAKAVACTQPR---------RVAAMSVAQR  126 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~--------~~~~~G~~~i~~~~~~---------~~~~~~~~~~  126 (302)
                      +-.++++++.+++|++++|+|++||||||+++++.|.        +.|++|.+.+--....         ......+...
T Consensus       396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tileh  475 (593)
T COG2401         396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEH  475 (593)
T ss_pred             eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHH
Confidence            3357899999999999999999999999999999884        5688887765321100         0000011111


Q ss_pred             hhhhhcccccc---ceeeeee--ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHH
Q psy2071         127 VSEEMDCQLGQ---EVGYSIR--FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLK  199 (302)
Q Consensus       127 ~~~~~~~~~~~---~v~~~~~--~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~  199 (302)
                      +    ....++   .++..-+  ..+..........||.||+.|..||.+++..|.+++.||   -.+.+|++.  .+.+
T Consensus       476 l----~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDE---F~AhLD~~TA~rVAr  548 (593)
T COG2401         476 L----RSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE---FAAHLDELTAVRVAR  548 (593)
T ss_pred             H----hhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhh---hhhhcCHHHHHHHHH
Confidence            1    111111   1111111  111112234567899999999999999999999999999   667788766  4555


Q ss_pred             HHHHHcCCCcEEEEEEecCHHHHHhh-ccCCCeee
Q psy2071         200 EVIKQRADLKLVIMSATLDAGKFQQY-FDNAPLMN  233 (302)
Q Consensus       200 ~ll~~~~~~~~~ii~~thd~~~~~~~-~d~~~~l~  233 (302)
                      ++-+..++.|+|++.+||..+....+ -|.++.+.
T Consensus       549 kiselaRe~giTlivvThrpEv~~AL~PD~li~vg  583 (593)
T COG2401         549 KISELAREAGITLIVVTHRPEVGNALRPDTLILVG  583 (593)
T ss_pred             HHHHHHHHhCCeEEEEecCHHHHhccCCceeEEee
Confidence            55555556799999999999999888 56666655

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.63  E-value=2.2e-16  Score=134.64  Aligned_cols=139  Identities=14%  Similarity=0.077  Sum_probs=95.0

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-CCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      .+++++.+.+|++++|+|||||||||++++++++.--. .|. .+    |            +.....++.+++...+  
T Consensus        19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~-~v----p------------a~~~~l~~~d~I~~~~--   79 (204)
T cd03282          19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGC-FV----P------------AEYATLPIFNRLLSRL--   79 (204)
T ss_pred             EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCC-Cc----c------------hhhcCccChhheeEec--
Confidence            56778888899999999999999999999998764211 110 00    1            1112223334443332  


Q ss_pred             cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071         146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVIKQRADLKLVIMSATLDAGKFQ  223 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~~~~~~ii~~thd~~~~~  223 (302)
                      ............+|.||++.. .+.+++.+|+++||||   |+.++|+..  .....+++...+.+.+++++||+.+.+.
T Consensus        80 ~~~d~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE---~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~  155 (204)
T cd03282          80 SNDDSMERNLSTFASEMSETA-YILDYADGDSLVLIDE---LGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAA  155 (204)
T ss_pred             CCccccchhhhHHHHHHHHHH-HHHHhcCCCcEEEecc---ccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence            222234456678999999764 4555789999999999   999998754  3445556655555889999999999888


Q ss_pred             hhccC
Q psy2071         224 QYFDN  228 (302)
Q Consensus       224 ~~~d~  228 (302)
                      ..++.
T Consensus       156 ~~~~~  160 (204)
T cd03282         156 ILGNK  160 (204)
T ss_pred             HhhcC
Confidence            66643

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.62  E-value=5.1e-16  Score=132.03  Aligned_cols=137  Identities=17%  Similarity=0.061  Sum_probs=78.3

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhccccc-CCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCc
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSP  151 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  151 (302)
                      .+..|++++|+||||||||||+++|+|..... .|. .+.+.     ...  .+........++.+++.....       
T Consensus        21 ~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~-~v~a~-----~~~--~q~~~l~~~~~~~d~l~~~~s-------   85 (199)
T cd03283          21 DMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGA-PVCAS-----SFE--LPPVKIFTSIRVSDDLRDGIS-------   85 (199)
T ss_pred             EEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCC-EEecC-----ccC--cccceEEEeccchhccccccC-------
Confidence            34558999999999999999999998865321 221 11110     000  000000111122222211110       


Q ss_pred             cccccccCHHHHHHHhccccCC--CCCcEEEEcCCCCCCcchHHHH-H-HHHHHHHHcCCCcEEEEEEecCHHHHHhh--
Q psy2071         152 KTVLKYMTDGMLLREGMSDPML--ENYQVILLDEAHERTLATDILM-G-VLKEVIKQRADLKLVIMSATLDAGKFQQY--  225 (302)
Q Consensus       152 ~~~~~~lS~G~~qr~~la~al~--~~p~lliLDE~~~p~~~lD~~~-~-~l~~ll~~~~~~~~~ii~~thd~~~~~~~--  225 (302)
                            ....+..|+.-+...+  .+|+++|+||   |+.++|+.. . ....+++...+.+.++|++||+.+.+...  
T Consensus        86 ------~~~~e~~~~~~iL~~~~~~~p~llllDE---p~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~  156 (199)
T cd03283          86 ------YFYAELRRLKEIVEKAKKGEPVLFLLDE---IFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDL  156 (199)
T ss_pred             ------hHHHHHHHHHHHHHhccCCCCeEEEEec---ccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhc
Confidence                  0112223333333333  4999999999   999999776 3 33456665555588999999999988765  


Q ss_pred             ccCCCeee
Q psy2071         226 FDNAPLMN  233 (302)
Q Consensus       226 ~d~~~~l~  233 (302)
                      .+++..++
T Consensus       157 ~~~v~~~~  164 (199)
T cd03283         157 DSAVRNYH  164 (199)
T ss_pred             CCCeEEEE
Confidence            34444433

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>KOG0064|consensus

Probab=99.59  E-value=1.1e-16  Score=148.32  Aligned_cols=147  Identities=18%  Similarity=0.217  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +....++.|++|-.+.|+||||||||+|++++.|+.+...|...+--  +.++-.+.+..++.   ..+.+++|-|+...
T Consensus       497 vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~--~~~mFYIPQRPYms---~gtlRDQIIYPdS~  571 (728)
T KOG0064|consen  497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR--PNNIFYIPQRPYMS---GGTLRDQIIYPDSS  571 (728)
T ss_pred             eecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC--CcceEeccCCCccC---cCcccceeecCCcH
Confidence            35778999999999999999999999999999999987666443211  11111111111111   22334444443211


Q ss_pred             c----------------------------C-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         146 E----------------------------D-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       146 ~----------------------------~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      +                            . ......--+.||||++||+++||.+-++|+..+|||   -|++..+-+ 
T Consensus       572 e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDE---cTsAvsidvE  648 (728)
T KOG0064|consen  572 EQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDE---CTSAVSIDVE  648 (728)
T ss_pred             HHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhh---hhcccccchH
Confidence            0                            0 001111224599999999999999999999999999   677776555 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGKFQ  223 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~  223 (302)
                      +.+.+..+   +.|++++++||....|.
T Consensus       649 ~~i~~~ak---~~gi~llsithrpslwk  673 (728)
T KOG0064|consen  649 GKIFQAAK---DAGISLLSITHRPSLWK  673 (728)
T ss_pred             HHHHHHHH---hcCceEEEeecCccHHH
Confidence            55555543   45999999999988775

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.51  E-value=3.1e-14  Score=119.82  Aligned_cols=126  Identities=15%  Similarity=0.138  Sum_probs=79.1

Q ss_pred             EEEEEccCCCCccchhhhhhh-cccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCV-EYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKY  157 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g-~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  157 (302)
                      +++|+||||+||||++++++. .+....|.... +..                ......+.+-  ..+............
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~-a~~----------------~~~~~~d~il--~~~~~~d~~~~~~s~   61 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVP-AES----------------AELPVFDRIF--TRIGASDSLAQGLST   61 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCee-ehh----------------eEecccceEE--EEeCCCCchhccccH
Confidence            468999999999999999973 33333343211 100                0001111111  122222334455677


Q ss_pred             cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccC
Q psy2071         158 MTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDN  228 (302)
Q Consensus       158 lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~  228 (302)
                      +|+|+++...+.. .+.+|+++|+||   |+.++|+..  ..+..+++...+ .+.+++++||+.+ +.++++.
T Consensus        62 fs~~~~~l~~~l~-~~~~~~llllDE---p~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~~~~~~  130 (185)
T smart00534       62 FMVEMKETANILK-NATENSLVLLDE---LGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LTKLADE  130 (185)
T ss_pred             HHHHHHHHHHHHH-hCCCCeEEEEec---CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHHHhhc
Confidence            8888887544443 356999999999   999999874  445566665444 3788999999995 6678875

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.50  E-value=3.7e-14  Score=125.60  Aligned_cols=129  Identities=18%  Similarity=0.224  Sum_probs=78.0

Q ss_pred             CEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-HHHHHHHhhhhhccccccceeeeeeecCCCCcccccc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-AMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK  156 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  156 (302)
                      ..++|+||||||||||++.++|++.|+.|++.+.|.....+. ....+..+...+.    ..++  .+.       +...
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q----~~~~--~r~-------~v~~  178 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQ----HDVG--IRT-------DVLD  178 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccc----cccc--ccc-------cccc
Confidence            578999999999999999999999999999999887654221 1111111110000    0111  010       1111


Q ss_pred             cc--CHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHH--H----------
Q psy2071         157 YM--TDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGK--F----------  222 (302)
Q Consensus       157 ~l--S~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~--~----------  222 (302)
                      .+  ..|+   .++++  +.+|++||+||   |...-+     +..+++... .|.+++++||+.+.  +          
T Consensus       179 ~~~k~~~~---~~~i~--~~~P~villDE---~~~~e~-----~~~l~~~~~-~G~~vI~ttH~~~~~~~~~r~~~~~l~  244 (270)
T TIGR02858       179 GCPKAEGM---MMLIR--SMSPDVIVVDE---IGREED-----VEALLEALH-AGVSIIATAHGRDVEDLYKRPVFKELI  244 (270)
T ss_pred             cchHHHHH---HHHHH--hCCCCEEEEeC---CCcHHH-----HHHHHHHHh-CCCEEEEEechhHHHHHHhChHHHHHH
Confidence            11  1132   22233  36999999999   654322     233333332 48899999997544  4          


Q ss_pred             -HhhccCCCeee
Q psy2071         223 -QQYFDNAPLMN  233 (302)
Q Consensus       223 -~~~~d~~~~l~  233 (302)
                       ..+|+++++|+
T Consensus       245 ~~~~~~r~i~L~  256 (270)
T TIGR02858       245 ENEAFERYVVLS  256 (270)
T ss_pred             hcCceEEEEEEe
Confidence             36788999997

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>KOG0066|consensus

Probab=99.50  E-value=3e-15  Score=136.39  Aligned_cols=77  Identities=14%  Similarity=0.203  Sum_probs=67.8

Q ss_pred             ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCC
Q psy2071         151 PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNA  229 (302)
Q Consensus       151 ~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~  229 (302)
                      .+++...+|||-+.|+++||||...|.+|.|||   ||..+|.-. ..+.+.++-+   +.|+++++||-.++...|..|
T Consensus       406 Q~rPt~kFSGGWRMRvSLARALflEPTLLMLDE---PTNHLDLNAVIWLdNYLQgW---kKTLLIVSHDQgFLD~VCtdI  479 (807)
T KOG0066|consen  406 QERPTTKFSGGWRMRVSLARALFLEPTLLMLDE---PTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQGFLDSVCTDI  479 (807)
T ss_pred             hcCCccccCCceeeehhHHHHHhcCceeeeecC---CccccccceeeehhhHHhhh---hheeEEEecccchHHHHHHHH
Confidence            345566799999999999999999999999999   999999655 6677777655   679999999999999999999


Q ss_pred             Ceee
Q psy2071         230 PLMN  233 (302)
Q Consensus       230 ~~l~  233 (302)
                      +.++
T Consensus       480 IHLD  483 (807)
T KOG0066|consen  480 IHLD  483 (807)
T ss_pred             hhhh
Confidence            9887

>PHA02653 RNA helicase NPH-II; Provisional

Probab=99.49  E-value=2.2e-13  Score=134.20  Aligned_cols=180  Identities=22%  Similarity=0.379  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc--------c-----cccCCCEEEeecCchhhhHHHHHHHhhhhhc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE--------Y-----SKSVGAKAVACTQPRRVAAMSVAQRVSEEMD  132 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~--------~-----~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~  132 (302)
                      +...+...+.+|+.+.+.|++||||||++++++..        .     .+......+...+|++..+..+...+....+
T Consensus       168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg  247 (675)
T PHA02653        168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG  247 (675)
T ss_pred             HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence            46778888999999999999999999999877632        1     1122234566678886655555554443332


Q ss_pred             cccccceeeeeeecCCCCc--cccccccCHHHHHH-HhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCc
Q psy2071         133 CQLGQEVGYSIRFEDCSSP--KTVLKYMTDGMLLR-EGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLK  209 (302)
Q Consensus       133 ~~~~~~v~~~~~~~~~~~~--~~~~~~lS~G~~qr-~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~  209 (302)
                      ......+...+++++....  .+..+  ..|...+ ..+....+.+.++||+||+||.....|.+..+++++....  .+
T Consensus       248 ~~~~~g~~v~v~~Gg~~~~~~~t~~k--~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~--rq  323 (675)
T PHA02653        248 FDEIDGSPISLKYGSIPDELINTNPK--PYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKI--RS  323 (675)
T ss_pred             ccccCCceEEEEECCcchHHhhcccC--CCCEEEEeCcccccccccCCEEEccccccCccchhHHHHHHHHhhhhc--CE
Confidence            2111222334555544321  11111  0111000 0122235788999999999999999998877777665432  26


Q ss_pred             EEEEEEec--CHHHHHhhccCCCeeeecCcC-CccceeecCCC
Q psy2071         210 LVIMSATL--DAGKFQQYFDNAPLMNVPGRT-HPVEIFYTPEP  249 (302)
Q Consensus       210 ~~ii~~th--d~~~~~~~~d~~~~l~i~g~~-~~~~~~~~~~~  249 (302)
                      +.+++||-  +.+.+..++....+++++|+. +|++.+|.+.+
T Consensus       324 ~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~  366 (675)
T PHA02653        324 LFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNK  366 (675)
T ss_pred             EEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecC
Confidence            89999999  566788899888999999985 99999987543

>KOG0921|consensus

Probab=99.48  E-value=5.4e-14  Score=136.73  Aligned_cols=194  Identities=36%  Similarity=0.645  Sum_probs=164.8

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC---CEEEeecCchhhhHHHHHHHhhh
Q psy2071          53 ELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG---AKAVACTQPRRVAAMSVAQRVSE  129 (302)
Q Consensus        53 ~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G---~~~i~~~~~~~~~~~~~~~~~~~  129 (302)
                      .....|.++|+......|...+..+.+++|.|++||||||++-+.+..--...+   .....+.+++++.+++++.++++
T Consensus       369 ~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~  448 (1282)
T KOG0921|consen  369 KITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVAN  448 (1282)
T ss_pred             hhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHH
Confidence            456778899999999999999999999999999999999999887654322222   22345678999999999999999


Q ss_pred             hhccccccceeeeeeecCCCC-ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCC
Q psy2071         130 EMDCQLGQEVGYSIRFEDCSS-PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADL  208 (302)
Q Consensus       130 ~~~~~~~~~v~~~~~~~~~~~-~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~  208 (302)
                      +....+++.++|.+|+....+ ....+-+++-|-..|.+=+  -+....++|.||.|++....|.+..++++++......
T Consensus       449 er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~--glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl  526 (1282)
T KOG0921|consen  449 ERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMEN--GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDL  526 (1282)
T ss_pred             hhHHhhcccccccccccccccccccceeeeccchhhhhhhh--cccccccccchhhhhhccchHHHHHHHHhhhccchhh
Confidence            999999999999999987654 3455667888877775543  3678889999999999999999999999998888888


Q ss_pred             cEEEEEEecCHHHHHhhccCCCeeeecCcCCccceeecCC
Q psy2071         209 KLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPE  248 (302)
Q Consensus       209 ~~~ii~~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~  248 (302)
                      ...+|++|-|-+.+..++..|+.+.+.|+.+|++.|+...
T Consensus       527 ~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led  566 (1282)
T KOG0921|consen  527 RVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLED  566 (1282)
T ss_pred             hhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHH
Confidence            9999999999999999999999999999999998887643

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.46  E-value=5.4e-14  Score=121.10  Aligned_cols=135  Identities=16%  Similarity=0.129  Sum_probs=76.6

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-CCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      ..++++...+ ++++|+|||||||||+++++++..-.. .|. .+.+.                      ...+++..+.
T Consensus        21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~-~vp~~----------------------~~~i~~~~~i   76 (216)
T cd03284          21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGS-FVPAS----------------------KAEIGVVDRI   76 (216)
T ss_pred             eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCC-eeccc----------------------cceecceeeE
Confidence            3455555544 899999999999999999997643211 121 00000                      0011211111


Q ss_pred             cCCCCccccccccCHHHHH----HHhccc--cCCCCCcEEEEcCCCCC---CcchHHHHHHHHHHHHHcCCC-cEEEEEE
Q psy2071         146 EDCSSPKTVLKYMTDGMLL----REGMSD--PMLENYQVILLDEAHER---TLATDILMGVLKEVIKQRADL-KLVIMSA  215 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~G~~q----r~~la~--al~~~p~lliLDE~~~p---~~~lD~~~~~l~~ll~~~~~~-~~~ii~~  215 (302)
                      ..   .-.....++.|+..    +..++.  ..+.+|+++||||   |   |+++|... ....+++...+. +.+++++
T Consensus        77 ~~---~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDE---p~~gt~~lD~~~-~~~~il~~l~~~~~~~vi~~  149 (216)
T cd03284          77 FT---RIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDE---IGRGTSTYDGLS-IAWAIVEYLHEKIGAKTLFA  149 (216)
T ss_pred             ec---cCCchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEec---CCCCCChHHHHH-HHHHHHHHHHhccCCcEEEE
Confidence            11   11112344444433    223433  3467999999999   8   88888643 222333333333 6788999


Q ss_pred             ecCHHHHHhhccCCCeee
Q psy2071         216 TLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       216 thd~~~~~~~~d~~~~l~  233 (302)
                      ||+. ++.+++|++..+.
T Consensus       150 TH~~-~l~~l~~~~~~v~  166 (216)
T cd03284         150 THYH-ELTELEGKLPRVK  166 (216)
T ss_pred             eCcH-HHHHHhhcCCCeE
Confidence            9996 5566888776554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.46  E-value=2.5e-13  Score=116.77  Aligned_cols=123  Identities=19%  Similarity=0.154  Sum_probs=79.8

Q ss_pred             CEEEEEccCCCCccchhhhhhhcc-cccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee-cCCCCccccc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEY-SKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF-EDCSSPKTVL  155 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~-~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~  155 (302)
                      .+++|+||||+||||++++++... .+..|...... ..                      .+++.-+. ......++..
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~-~~----------------------~~~~~d~i~~~l~~~~si~   86 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD-SA----------------------TIGLVDKIFTRMSSRESVS   86 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC-Cc----------------------EEeeeeeeeeeeCCccChh
Confidence            789999999999999999997421 14455433211 00                      11111111 1111223333


Q ss_pred             cccC--HHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcCC---CcEEEEEEecCHHHHHhhc
Q psy2071         156 KYMT--DGMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVIKQRAD---LKLVIMSATLDAGKFQQYF  226 (302)
Q Consensus       156 ~~lS--~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~~---~~~~ii~~thd~~~~~~~~  226 (302)
                      ..+|  .-+.+|++++++++.+++++||||   |+.++|+..  ..+..+++...+   .+.+++++||+.+.+....
T Consensus        87 ~~~S~f~~el~~l~~~l~~~~~~slvllDE---~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~  161 (213)
T cd03281          87 SGQSAFMIDLYQVSKALRLATRRSLVLIDE---FGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL  161 (213)
T ss_pred             hccchHHHHHHHHHHHHHhCCCCcEEEecc---ccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence            4445  346789999999999999999999   999999753  444555554432   2458899999999888764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01069 mutS2 MutS2 family protein

Probab=99.39  E-value=3.2e-13  Score=135.40  Aligned_cols=131  Identities=15%  Similarity=0.095  Sum_probs=87.8

Q ss_pred             HHHHHHhC-CEEEEEccCCCCccchhhhhhhc-ccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeec
Q psy2071          70 FMTLLAQN-QCIVLVGETGSGKTTQIPQWCVE-YSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFE  146 (302)
Q Consensus        70 i~~~i~~g-~i~~liG~nGsGKSTll~~i~g~-~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  146 (302)
                      +++.+..+ ++++|+||||+||||++++++|. +.+..| .+.....  ...               ...+.+.  ..+.
T Consensus       314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~--~~~---------------~~~d~i~--~~i~  374 (771)
T TIGR01069       314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEH--SEI---------------PYFEEIF--ADIG  374 (771)
T ss_pred             ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcc--ccc---------------cchhhee--eecC
Confidence            35556656 89999999999999999999987 455555 2211100  000               0011111  1111


Q ss_pred             CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH-HHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071         147 DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL-KEVIKQRADLKLVIMSATLDAGKFQ  223 (302)
Q Consensus       147 ~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l-~~ll~~~~~~~~~ii~~thd~~~~~  223 (302)
                      ........+..+|+||+++..+++.+ .+|+++||||   |+.++|+.. ..+ ..++....+.+.++|++||+.+...
T Consensus       375 ~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE---~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~  449 (771)
T TIGR01069       375 DEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDE---LGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA  449 (771)
T ss_pred             hHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecC---CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence            11222344677999999999888776 7899999999   999999877 334 5677666566889999999987643

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>KOG0063|consensus

Probab=99.38  E-value=2.5e-13  Score=123.61  Aligned_cols=158  Identities=21%  Similarity=0.226  Sum_probs=102.6

Q ss_pred             HHHHHHHHhCC-----EEEEEccCCCCccchhhhhhhcccccCC-CEEEeecC-------chhhh-HHHHHH-Hhh-hhh
Q psy2071          68 TEFMTLLAQNQ-----CIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQ-------PRRVA-AMSVAQ-RVS-EEM  131 (302)
Q Consensus        68 ~~i~~~i~~g~-----i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~-------~~~~~-~~~~~~-~~~-~~~  131 (302)
                      .++.+.|+.|+     +++.+|+||.||||++++++|.++|+.| ++......       +.+.. ...+.. .+. .++
T Consensus       353 g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~  432 (592)
T KOG0063|consen  353 GDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYM  432 (592)
T ss_pred             eeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhc
Confidence            45556666664     6899999999999999999999999987 33222111       11111 111111 000 011


Q ss_pred             ccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHH-----HHHHHHHHcC
Q psy2071         132 DCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMG-----VLKEVIKQRA  206 (302)
Q Consensus       132 ~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~-----~l~~ll~~~~  206 (302)
                      .......+.-.++.+.  ..+..+..||||++||+++|.+|=...++.++||   |..-+|...+     .++.++-   
T Consensus       433 ~pqF~~dvmkpL~ie~--i~dqevq~lSggelQRval~KOGGKpAdvYliDE---psAylDSeQRi~AskvikRfil---  504 (592)
T KOG0063|consen  433 HPQFVNDVMKPLQIEN--IIDQEVQGLSGGELQRVALALCLGKPADVYLIDE---PSAYLDSEQRIIASKVIKRFIL---  504 (592)
T ss_pred             CHHHHHhhhhhhhHHH--HHhHHhhcCCchhhHHHHHHHhcCCCCceEEecC---chhhcChHHHHHHHHHHHHHHH---
Confidence            1111111222222211  2345678899999999999999999999999999   9999996552     2333332   


Q ss_pred             CCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         207 DLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       207 ~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      ..+.|-.++.||.-.+.-++|++++..
T Consensus       505 hakktafvVEhdfImaTYladrvivf~  531 (592)
T KOG0063|consen  505 HAKKTAFVVEHDFIMATYLADRVIVFE  531 (592)
T ss_pred             hccchhhhhhhHHHHHHhhcceeEEEe
Confidence            236677788999988888999998876

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.35  E-value=1.5e-12  Score=131.03  Aligned_cols=136  Identities=15%  Similarity=0.161  Sum_probs=91.2

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc-cccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY-SKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTV  154 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~-~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  154 (302)
                      .+.+++|+|||++||||+|++++... -...|. .+-....               ....+.+.+.  .+..........
T Consensus       326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~-~vpa~~~---------------~~i~~~~~i~--~~ig~~~si~~~  387 (782)
T PRK00409        326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGL-PIPANEP---------------SEIPVFKEIF--ADIGDEQSIEQS  387 (782)
T ss_pred             CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCC-CcccCCC---------------ccccccceEE--EecCCccchhhc
Confidence            45689999999999999999986431 122221 0100000               0011112221  122222334456


Q ss_pred             ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H-HHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCee
Q psy2071         155 LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G-VLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLM  232 (302)
Q Consensus       155 ~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~-~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l  232 (302)
                      +..+|+||++++.+++++ .+|+++||||   |+.++|+.. . +...++....+.+.+++++||+.+.....+++..++
T Consensus       388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE---~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~  463 (782)
T PRK00409        388 LSTFSGHMTNIVRILEKA-DKNSLVLFDE---LGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVE  463 (782)
T ss_pred             hhHHHHHHHHHHHHHHhC-CcCcEEEecC---CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeE
Confidence            678999999999999887 8999999999   999999876 3 335566655555889999999998888777776665


Q ss_pred             e
Q psy2071         233 N  233 (302)
Q Consensus       233 ~  233 (302)
                      .
T Consensus       464 ~  464 (782)
T PRK00409        464 N  464 (782)
T ss_pred             E
Confidence            4

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.30  E-value=3.1e-12  Score=110.37  Aligned_cols=132  Identities=14%  Similarity=0.101  Sum_probs=79.2

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhh-cccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCV-EYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g-~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      ..++++.+.+|++++|+||||+||||+++++++ .+.+..|..... ...                ...+.+.+-.  ++
T Consensus        21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~~----------------~~~~~~~i~~--~~   81 (222)
T cd03287          21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SSA----------------TLSIFDSVLT--RM   81 (222)
T ss_pred             EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-Cce----------------EEeccceEEE--Ee
Confidence            456777888999999999999999999999999 566677754322 111                0111112211  11


Q ss_pred             cCCCCccccccccCHH--HHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcCCC-cEEEEEEecCHH
Q psy2071         146 EDCSSPKTVLKYMTDG--MLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVIKQRADL-KLVIMSATLDAG  220 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~G--~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~~~-~~~ii~~thd~~  220 (302)
                      ..   .+.....+|.=  +.+++.-....+.+++++||||   +..+++..-  .....+++.+.+. +.+++++||+.+
T Consensus        82 ~~---~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE---~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~  155 (222)
T cd03287          82 GA---SDSIQHGMSTFMVELSETSHILSNCTSRSLVILDE---LGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS  155 (222)
T ss_pred             cC---ccccccccchHHHHHHHHHHHHHhCCCCeEEEEcc---CCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence            11   11222223332  3333333333467899999999   766665333  2234445444443 788999999988


Q ss_pred             HHH
Q psy2071         221 KFQ  223 (302)
Q Consensus       221 ~~~  223 (302)
                      ...
T Consensus       156 l~~  158 (222)
T cd03287         156 LGE  158 (222)
T ss_pred             HHH
Confidence            754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.28  E-value=4.3e-12  Score=113.10  Aligned_cols=75  Identities=19%  Similarity=0.273  Sum_probs=55.6

Q ss_pred             ccccCHHHHHHHhccccCC---------CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071         155 LKYMTDGMLLREGMSDPML---------ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ  224 (302)
Q Consensus       155 ~~~lS~G~~qr~~la~al~---------~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~  224 (302)
                      ...+|+||++++++|++|+         .+|+++|+||   |++++|+.. ..+.+.+...   + .+++++|+.+.+..
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDE---p~a~LD~~~~~~l~~~l~~~---~-q~ii~~~~~~~~~~  253 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDD---VLAELDLGRQAALLDAIEGR---V-QTFVTTTDLADFDA  253 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcC---cchhcCHHHHHHHHHHhhcC---C-CEEEEeCCchhccc
Confidence            3448999999999999874         7999999999   999999877 6677776544   2 34555667777777


Q ss_pred             hc---cCCCeeeecCc
Q psy2071         225 YF---DNAPLMNVPGR  237 (302)
Q Consensus       225 ~~---d~~~~l~i~g~  237 (302)
                      +|   +++..++ .|+
T Consensus       254 ~~~~~~~i~~l~-~g~  268 (270)
T cd03242         254 LWLRRAQIFRVD-AGT  268 (270)
T ss_pred             hhccCccEEEEe-CcE
Confidence            77   3444444 443

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0065|consensus

Probab=99.26  E-value=1.1e-12  Score=133.48  Aligned_cols=170  Identities=12%  Similarity=0.189  Sum_probs=114.1

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc---CCCEEEeecCchhhhH----HHHHHHhhhhhccccc
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS---VGAKAVACTQPRRVAA----MSVAQRVSEEMDCQLG  136 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~---~G~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~  136 (302)
                      ...+++++..+++|+.+.++|+.|||||||++.++|...-.   .|.+..+|.+......    ....+.-.....+++.
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr  207 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR  207 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence            45689999999999999999999999999999999976432   3578888765322111    1111111112233444


Q ss_pred             cceeeeeeecCC---------------------------CCc-----cccccccCHHHHHHHhccccCCCCCcEEEEcCC
Q psy2071         137 QEVGYSIRFEDC---------------------------SSP-----KTVLKYMTDGMLLREGMSDPMLENYQVILLDEA  184 (302)
Q Consensus       137 ~~v~~~~~~~~~---------------------------~~~-----~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~  184 (302)
                      +.+.+..+....                           .-.     +..++-.|||||+|+.++-+++.+++++.+|| 
T Consensus       208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De-  286 (1391)
T KOG0065|consen  208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE-  286 (1391)
T ss_pred             ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec-
Confidence            444333322111                           001     12234499999999999999999999999999 


Q ss_pred             CCCCcchHHHH--HHHHHHHHHcCCCcEE-EEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         185 HERTLATDILM--GVLKEVIKQRADLKLV-IMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       185 ~~p~~~lD~~~--~~l~~ll~~~~~~~~~-ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                        .+.|+|...  +.++.+.+.....+.| ++++..-.++..+++|.|++|. +|.
T Consensus       287 --~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~-eG~  339 (1391)
T KOG0065|consen  287 --ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLS-EGY  339 (1391)
T ss_pred             --ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeee-ccc
Confidence              999999766  4444443332333444 4444456688999999999998 776

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.25  E-value=5.2e-12  Score=128.35  Aligned_cols=78  Identities=14%  Similarity=0.113  Sum_probs=70.6

Q ss_pred             ccccccccCHHHHHHHhccccCCCCC--cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         151 PKTVLKYMTDGMLLREGMSDPMLENY--QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       151 ~~~~~~~lS~G~~qr~~la~al~~~p--~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                      .++.+..|||||+||+.||++|+.+|  .++||||   |+++||+.. ..+.++++++.+.|.|||+++||++.+. +||
T Consensus       481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDE---PtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD  556 (924)
T TIGR00630       481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDE---PSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AAD  556 (924)
T ss_pred             cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcC---CccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCC
Confidence            35677899999999999999999986  8999999   999999887 7788888877777999999999999886 899


Q ss_pred             CCCee
Q psy2071         228 NAPLM  232 (302)
Q Consensus       228 ~~~~l  232 (302)
                      ++++|
T Consensus       557 ~vi~L  561 (924)
T TIGR00630       557 YVIDI  561 (924)
T ss_pred             EEEEe
Confidence            99999

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.25  E-value=4.2e-12  Score=129.25  Aligned_cols=78  Identities=15%  Similarity=0.125  Sum_probs=71.1

Q ss_pred             ccccccccCHHHHHHHhccccCCCCC--cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         151 PKTVLKYMTDGMLLREGMSDPMLENY--QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       151 ~~~~~~~lS~G~~qr~~la~al~~~p--~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                      .++.+..||+||+||++||++|+.+|  +++||||   |+++||+.. ..+.++++++.+.|.|||+++|+++++. .||
T Consensus       483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDE---PtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD  558 (943)
T PRK00349        483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDE---PSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AAD  558 (943)
T ss_pred             CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecC---CccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCC
Confidence            46778899999999999999999997  9999999   999999887 7888888877777999999999999986 699


Q ss_pred             CCCee
Q psy2071         228 NAPLM  232 (302)
Q Consensus       228 ~~~~l  232 (302)
                      ++++|
T Consensus       559 ~vi~L  563 (943)
T PRK00349        559 YIVDI  563 (943)
T ss_pred             EEEEe
Confidence            99999

>PRK13695 putative NTPase; Provisional

Probab=99.24  E-value=9.6e-12  Score=103.56  Aligned_cols=148  Identities=18%  Similarity=0.196  Sum_probs=83.8

Q ss_pred             EEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhh-ccccccceeeeeeec--CCCCccccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEM-DCQLGQEVGYSIRFE--DCSSPKTVL  155 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~--~~~~~~~~~  155 (302)
                      .++|+|++||||||++..+.+.+.+ .|. .+.+.-.....  .......... ....+. -.+..+..  ......+..
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~-~~~g~~~~~~~--~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~   76 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKE-EGY-KVGGFYTEEVR--EGGKRIGFKIIDLDTGE-EGILARVGFPSRPRVGKYV   76 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCC-eEEEEEcHHHH--hcCCccceEEEEcCCCC-eEEccccCCCCCCceeeEE
Confidence            4789999999999999998877654 453 22221111100  0000000000 000000 00101111  011112334


Q ss_pred             cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeee
Q psy2071         156 KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNV  234 (302)
Q Consensus       156 ~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i  234 (302)
                      ..+|++++.+..+++..+.+|++||+||++ ++...+... ..+.+++    +.+.+++.++|+ ..+..++|++..+. 
T Consensus        77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~-~~e~~~~~~~~~l~~~~----~~~~~~i~v~h~-~~~~~~~~~i~~~~-  149 (174)
T PRK13695         77 VNLEDLERIGIPALERALEEADVIIIDEIG-KMELKSPKFVKAVEEVL----DSEKPVIATLHR-RSVHPFVQEIKSRP-  149 (174)
T ss_pred             EehHHHHHHHHHHHHhccCCCCEEEEECCC-cchhhhHHHHHHHHHHH----hCCCeEEEEECc-hhhHHHHHHHhccC-
Confidence            569999999999998888999999999942 333444333 4444443    347799999998 45667889887776 


Q ss_pred             cCcC
Q psy2071         235 PGRT  238 (302)
Q Consensus       235 ~g~~  238 (302)
                      .|+.
T Consensus       150 ~~~i  153 (174)
T PRK13695        150 GGRV  153 (174)
T ss_pred             CcEE
Confidence            5543

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.21  E-value=1e-11  Score=104.15  Aligned_cols=142  Identities=10%  Similarity=0.015  Sum_probs=85.0

Q ss_pred             EEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccccc--ceeeeeeecCCCCcccccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQ--EVGYSIRFEDCSSPKTVLK  156 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~  156 (302)
                      ++.|.||+|+||||+.-+++-...-....+.+...+.............    +.....  ..+..      ...+....
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~----g~~~~~l~~~g~l------~~~d~~~~   70 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESL----GWDLERLEDEGLL------AIVDADPD   70 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHc----CCChHHHHhcCCe------EEEecCcc
Confidence            3689999999999998766543322223444444332221111111111    111110  11110      11123345


Q ss_pred             ccCHHHHH------HHhccccCCCCCcEEEEcCCCCCCcchH---HHH-HHHHHHHHHcCCCcEEEEEEecCHHH-----
Q psy2071         157 YMTDGMLL------REGMSDPMLENYQVILLDEAHERTLATD---ILM-GVLKEVIKQRADLKLVIMSATLDAGK-----  221 (302)
Q Consensus       157 ~lS~G~~q------r~~la~al~~~p~lliLDE~~~p~~~lD---~~~-~~l~~ll~~~~~~~~~ii~~thd~~~-----  221 (302)
                      .+|+|+.+      ......+...+|+++++||   ++..+|   ... ..+.+++...++.|+|+++++|+...     
T Consensus        71 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~---~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~  147 (187)
T cd01124          71 EIGPAESSLRLELIQRLKDAIEEFKAKRVVIDS---VSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGF  147 (187)
T ss_pred             ccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeC---cHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCccc
Confidence            67888877      4444555667999999999   888887   444 55666666655668999999998764     


Q ss_pred             ----HHhhccCCCeee
Q psy2071         222 ----FQQYFDNAPLMN  233 (302)
Q Consensus       222 ----~~~~~d~~~~l~  233 (302)
                          +..+||.++.|+
T Consensus       148 ~~~~~~~~aD~ii~l~  163 (187)
T cd01124         148 GGGDVEYLVDGVIRLR  163 (187)
T ss_pred             CcCceeEeeeEEEEEE
Confidence                678888888887

A related protein is found in archaea.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.17  E-value=2.2e-11  Score=129.57  Aligned_cols=79  Identities=18%  Similarity=0.182  Sum_probs=71.3

Q ss_pred             ccccccccCHHHHHHHhccccCCCCC--cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         151 PKTVLKYMTDGMLLREGMSDPMLENY--QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       151 ~~~~~~~lS~G~~qr~~la~al~~~p--~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                      .++.+..||+||+||++||++|+.+|  .++||||   |+++||+.. ..+.++++.+.+.|.|||++|||.+ +.++||
T Consensus       470 ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDE---PTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~-vi~~aD  545 (1809)
T PRK00635        470 PERALATLSGGEQERTALAKHLGAELIGITYILDE---PSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ-MISLAD  545 (1809)
T ss_pred             CCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEEC---CccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHhCC
Confidence            35677899999999999999999999  8999999   999999877 7788888877667899999999999 668999


Q ss_pred             CCCeee
Q psy2071         228 NAPLMN  233 (302)
Q Consensus       228 ~~~~l~  233 (302)
                      ++++|.
T Consensus       546 rVi~L~  551 (1809)
T PRK00635        546 RIIDIG  551 (1809)
T ss_pred             EEEEEc
Confidence            999995

>KOG0063|consensus

Probab=99.14  E-value=5.4e-11  Score=108.57  Aligned_cols=156  Identities=15%  Similarity=0.109  Sum_probs=98.0

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch------h-hhHHHHH--------------HHhhhhh-
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR------R-VAAMSVA--------------QRVSEEM-  131 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~------~-~~~~~~~--------------~~~~~~~-  131 (302)
                      -.+|++.+++|-||-||||-++.++|-.+|.-|.-. .+....      + .......              |++-..+ 
T Consensus        97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr  175 (592)
T KOG0063|consen   97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR  175 (592)
T ss_pred             CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence            358999999999999999999999999999877421 110000      0 0000000              0110000 


Q ss_pred             --ccccccceeeeee----------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHH-HH
Q psy2071         132 --DCQLGQEVGYSIR----------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMG-VL  198 (302)
Q Consensus       132 --~~~~~~~v~~~~~----------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~-~l  198 (302)
                        ..+++..++-...          .......++.+..+|||+.||.++|.+.+.+.++.++||   |++.+|.-.. ..
T Consensus       176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDE---pSsYLDVKQRLka  252 (592)
T KOG0063|consen  176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDE---PSSYLDVKQRLKA  252 (592)
T ss_pred             HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecC---CcccchHHHhhhH
Confidence              0011111110000          000011244567799999999999999999999999999   9999997652 23


Q ss_pred             HHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         199 KEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       199 ~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      ...++.+-.-..-|+++.||+..+.-+.|-+.++.
T Consensus       253 A~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY  287 (592)
T KOG0063|consen  253 AITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY  287 (592)
T ss_pred             HHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence            33344333334566777999999998999888876

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.14  E-value=5.8e-11  Score=103.29  Aligned_cols=146  Identities=12%  Similarity=0.100  Sum_probs=77.1

Q ss_pred             HHHhCCEEEEEccCCCCccch-hhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcc-ccccceeeeeeecCCCC
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQ-IPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDC-QLGQEVGYSIRFEDCSS  150 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTl-l~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~  150 (302)
                      -+++|++++|+|+|||||||+ ++.+++..++....+++...... .........+...... .....+.+ ....    
T Consensus        20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~-~~~~~~~~~~g~~~~~~~~~~~l~~-~~~~----   93 (230)
T PRK08533         20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTT-TEFIKQMMSLGYDINKKLISGKLLY-IPVY----   93 (230)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCH-HHHHHHHHHhCCchHHHhhcCcEEE-EEec----
Confidence            378999999999999999999 57777766654444555433322 1222222111111000 00011111 1110    


Q ss_pred             ccccccccCHHHHHHHhccc----cCCCCCcEEEEcCCCCCCcch----HHHH-HHHHHHHHHcCCCcEEEEEEecCHHH
Q psy2071         151 PKTVLKYMTDGMLLREGMSD----PMLENYQVILLDEAHERTLAT----DILM-GVLKEVIKQRADLKLVIMSATLDAGK  221 (302)
Q Consensus       151 ~~~~~~~lS~G~~qr~~la~----al~~~p~lliLDE~~~p~~~l----D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~  221 (302)
                           ..++++..++..+.+    .-..+|+++++||   |+..+    |+.. ..+.++++...+.+.|+++ ||+...
T Consensus        94 -----~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe---~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~  164 (230)
T PRK08533         94 -----PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDS---LSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKE  164 (230)
T ss_pred             -----ccccChHHHHHHHHHHHHHHHhcCCCEEEEEC---ccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-Eecccc
Confidence                 113333322222211    1125799999999   88887    6543 5566666655555666665 666543


Q ss_pred             H--------HhhccCCCeee
Q psy2071         222 F--------QQYFDNAPLMN  233 (302)
Q Consensus       222 ~--------~~~~d~~~~l~  233 (302)
                      +        ..++|.++.|+
T Consensus       165 ~~~~~~~~~~~~~DgvI~L~  184 (230)
T PRK08533        165 LDESVLTILRTAATMLIRLE  184 (230)
T ss_pred             cccccceeEEEeeeEEEEEE
Confidence            2        34456666665

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.13  E-value=3.9e-11  Score=103.26  Aligned_cols=136  Identities=15%  Similarity=0.154  Sum_probs=79.3

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-CCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      .+++++.+++|++++|+||||+||||+++++++..-.. .|. .+    |....            .....+.+-.  ++
T Consensus        20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~-~v----pa~~~------------~i~~~~~i~~--~~   80 (218)
T cd03286          20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM-DV----PAKSM------------RLSLVDRIFT--RI   80 (218)
T ss_pred             EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC-cc----Ccccc------------EeccccEEEE--ec
Confidence            56778888889999999999999999999987753221 121 11    00000            0001111111  11


Q ss_pred             cCCCCccccccccCH--HHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcCCC-cEEEEEEecCHH
Q psy2071         146 EDCSSPKTVLKYMTD--GMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVIKQRADL-KLVIMSATLDAG  220 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~--G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~~~-~~~ii~~thd~~  220 (302)
                      .   ..+.....+|.  .+.+++.-....+.+|+++||||   +..|+++..  .+...+++.+.+. +.+++++||+.+
T Consensus        81 ~---~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE---~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e  154 (218)
T cd03286          81 G---ARDDIMKGESTFMVELSETANILRHATPDSLVILDE---LGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS  154 (218)
T ss_pred             C---cccccccCcchHHHHHHHHHHHHHhCCCCeEEEEec---ccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence            1   11112222332  23344433333458999999999   887777554  3333334443333 789999999999


Q ss_pred             HHHhhcc
Q psy2071         221 KFQQYFD  227 (302)
Q Consensus       221 ~~~~~~d  227 (302)
                      .+..++.
T Consensus       155 l~~~~~~  161 (218)
T cd03286         155 LCDEFHE  161 (218)
T ss_pred             HHHHhhc
Confidence            9888763

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.12  E-value=3.8e-11  Score=117.14  Aligned_cols=72  Identities=15%  Similarity=0.123  Sum_probs=60.6

Q ss_pred             cCHHHHHHHhccccCCCCC---cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         158 MTDGMLLREGMSDPMLENY---QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       158 lS~G~~qr~~la~al~~~p---~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      ||||+.||+-||.-|....   .+.||||   ||.||-..- ..|.+++.++-+.|-|||++.|+++.+. .||.|+=|-
T Consensus       823 LSGGEaQRvKLA~EL~k~~tg~TlYiLDE---PTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk-~AD~IIDLG  898 (935)
T COG0178         823 LSGGEAQRVKLAKELSKRSTGKTLYILDE---PTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK-TADWIIDLG  898 (935)
T ss_pred             ccchHHHHHHHHHHHhhccCCCeEEEeCC---CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe-ecCEEEEcC
Confidence            9999999999999988776   8999999   999998654 6677777777788999999999998774 677665544

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.08  E-value=2.4e-10  Score=93.81  Aligned_cols=150  Identities=21%  Similarity=0.221  Sum_probs=86.1

Q ss_pred             cCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc--cCCCEEEeecC-chhhhHHHHHHHhhhhhcccc
Q psy2071          59 ITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK--SVGAKAVACTQ-PRRVAAMSVAQRVSEEMDCQL  135 (302)
Q Consensus        59 ~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~--~~G~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~  135 (302)
                      .++|+++.++. .+.+ .-.|+.|+|+||+||||||..|+-....  ..|...+.+.- ....+....+..+   .... 
T Consensus        21 ~slPa~r~l~~-~LeF-~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~---~~~k-   94 (233)
T COG3910          21 FSLPAFRHLEE-RLEF-RAPITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLH---KRKK-   94 (233)
T ss_pred             ccchHHHhhhh-hccc-cCceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHh---hcCC-
Confidence            45788777764 3333 4569999999999999999998644322  22333222211 1100100001000   0000 


Q ss_pred             ccceeeeeeecCCC--------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHH-HHHH
Q psy2071         136 GQEVGYSIRFEDCS--------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMG-VLKE  200 (302)
Q Consensus       136 ~~~v~~~~~~~~~~--------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~-~l~~  200 (302)
                       -..+|.+|-+...              .....+...|.|+----.+.+. +.+-.+.||||   |-++|.+..+ .+..
T Consensus        95 -~~~g~FlRAEs~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDE---PEa~LSp~RQlella  169 (233)
T COG3910          95 -PPIGFFLRAESFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNR-FNGQGIYILDE---PEAALSPSRQLELLA  169 (233)
T ss_pred             -CCcceEEehhHHHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHH-hccCceEEecC---ccccCCHHHHHHHHH
Confidence             0123333221110              0122345688887655444444 46778999999   9999998773 4666


Q ss_pred             HHHHcCCCcEEEEEEecCH
Q psy2071         201 VIKQRADLKLVIMSATLDA  219 (302)
Q Consensus       201 ll~~~~~~~~~ii~~thd~  219 (302)
                      ++..+.+.|.-+|++||..
T Consensus       170 ~l~~la~sGaQ~IiATHSP  188 (233)
T COG3910         170 ILRDLADSGAQIIIATHSP  188 (233)
T ss_pred             HHHHHHhcCCeEEEEecCh
Confidence            6777777789999999975

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.08  E-value=1.8e-10  Score=99.46  Aligned_cols=72  Identities=14%  Similarity=0.099  Sum_probs=48.9

Q ss_pred             ccCHHHHHHHhcccc----CCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCe
Q psy2071         157 YMTDGMLLREGMSDP----MLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPL  231 (302)
Q Consensus       157 ~lS~G~~qr~~la~a----l~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~  231 (302)
                      .|||||+..++||.-    -....+++||||   +.+++|... ..+.+++....+. .-++++||+.. +...+|+.+.
T Consensus       136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDE---vd~~LD~~~~~~l~~~l~~~~~~-~Q~ii~Th~~~-~~~~a~~~~~  210 (220)
T PF02463_consen  136 FLSGGEKSLVALALLLALQRYKPSPFLILDE---VDAALDEQNRKRLADLLKELSKQ-SQFIITTHNPE-MFEDADKLIG  210 (220)
T ss_dssp             GS-HHHHHHHHHHHHHHHHTCS--SEEEEES---TTTTS-HHHHHHHHHHHHHHTTT-SEEEEE-S-HH-HHTT-SEEEE
T ss_pred             ccccccccccccccccccccccccccccccc---ccccccccccccccccccccccc-ccccccccccc-cccccccccc
Confidence            699999999887643    356788999999   999999877 7788888876543 55677799965 5566777665


Q ss_pred             ee
Q psy2071         232 MN  233 (302)
Q Consensus       232 l~  233 (302)
                      +.
T Consensus       211 v~  212 (220)
T PF02463_consen  211 VT  212 (220)
T ss_dssp             EE
T ss_pred             cc
Confidence            55

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.04  E-value=4.5e-10  Score=101.93  Aligned_cols=132  Identities=18%  Similarity=0.115  Sum_probs=79.4

Q ss_pred             HHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecC
Q psy2071          68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFED  147 (302)
Q Consensus        68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  147 (302)
                      .=+.+.+..|+.++|+|+|||||||+++++++++++..|.+.+..  +....             ......+.+..+...
T Consensus       135 ~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~-------------~~~~~~~~l~~~~~~  199 (308)
T TIGR02788       135 EFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIF-------------LPHPNYVHLFYSKGG  199 (308)
T ss_pred             HHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccC-------------CCCCCEEEEEecCCC
Confidence            346778999999999999999999999999999988777665532  11110             000011111111100


Q ss_pred             CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         148 CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       148 ~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                           .....++-    .-.+..+|-.+|++|++||   +..  ...    .++++.......++++++|..+ +....+
T Consensus       200 -----~~~~~~~~----~~~l~~~Lr~~pd~ii~gE---~r~--~e~----~~~l~a~~~g~~~~i~T~Ha~~-~~~~~~  260 (308)
T TIGR02788       200 -----QGLAKVTP----KDLLQSCLRMRPDRIILGE---LRG--DEA----FDFIRAVNTGHPGSITTLHAGS-PEEAFE  260 (308)
T ss_pred             -----CCcCccCH----HHHHHHHhcCCCCeEEEec---cCC--HHH----HHHHHHHhcCCCeEEEEEeCCC-HHHHHH
Confidence                 00111222    2345567788999999999   553  122    2333333322335678889887 555688


Q ss_pred             CCCeee
Q psy2071         228 NAPLMN  233 (302)
Q Consensus       228 ~~~~l~  233 (302)
                      |+..+.
T Consensus       261 Rl~~l~  266 (308)
T TIGR02788       261 QLALMV  266 (308)
T ss_pred             HHHHHh
Confidence            887664

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.02  E-value=2.3e-10  Score=98.44  Aligned_cols=43  Identities=5%  Similarity=0.060  Sum_probs=37.7

Q ss_pred             HHHHHhccccCCCCCcEEEEcCCCCCC-----cchHHHH-HHHHHHHHHcCC
Q psy2071         162 MLLREGMSDPMLENYQVILLDEAHERT-----LATDILM-GVLKEVIKQRAD  207 (302)
Q Consensus       162 ~~qr~~la~al~~~p~lliLDE~~~p~-----~~lD~~~-~~l~~ll~~~~~  207 (302)
                      +++++.||++++.+|+++++||   |+     .++|+.. ..+.+++...+.
T Consensus       157 ~~~f~~ia~~l~~~p~~~~ldE---p~~~~~~~~ld~~~~~~~~~~~~~~~~  205 (215)
T PTZ00132        157 EKPFLWLARRLTNDPNLVFVGA---PALAPEEIQIDPELVAQAEKELQAAAN  205 (215)
T ss_pred             HHHHHHHHHHHhhcccceecCC---cccCCCccccCHHHHHHHHHHHHHHhh
Confidence            7788999999999999999999   99     9999888 778888776543

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.02  E-value=6.5e-10  Score=90.45  Aligned_cols=130  Identities=16%  Similarity=0.051  Sum_probs=76.5

Q ss_pred             EEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcccccccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYM  158 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  158 (302)
                      +++|.|+||+||||++..+++...+..+.+.+...............   .........+..+...         .....
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~~~~   68 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLI---GESLKGALDNLIIVFA---------TADDP   68 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHh---hhhhccccccEEEEEc---------CCCCC
Confidence            47899999999999999999988766666666554432211111100   0000000111111100         00112


Q ss_pred             CHHHHHHHhccccCCCCCcEEEEcCCCCCCcch----------HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071         159 TDGMLLREGMSDPMLENYQVILLDEAHERTLAT----------DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQ  223 (302)
Q Consensus       159 S~G~~qr~~la~al~~~p~lliLDE~~~p~~~l----------D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~  223 (302)
                      +.+..++...+.+...+|+++|+||   ++.-.          +... ..+.++....++.++++++++|......
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~lviDe---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~  141 (165)
T cd01120          69 AAARLLSKAERLRERGGDDLIILDE---LTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDK  141 (165)
T ss_pred             cHHHHHHHHHHHHhCCCCEEEEEEc---HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccc
Confidence            3344556677888889999999999   55332          2233 5666776666667999999999765443

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR00634 recN DNA repair protein RecN

Probab=98.99  E-value=7e-10  Score=108.68  Aligned_cols=73  Identities=12%  Similarity=0.084  Sum_probs=64.3

Q ss_pred             cccCHHHHHHHhccccCCCC----CcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCC
Q psy2071         156 KYMTDGMLLREGMSDPMLEN----YQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAP  230 (302)
Q Consensus       156 ~~lS~G~~qr~~la~al~~~----p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~  230 (302)
                      ..+||||++|+++|++++..    |+++|+||   |++++|... ..+.+++..... +.+||++||++..+. +||+++
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDE---p~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~~~~-~ad~~~  513 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDE---VDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQVAA-HADAHF  513 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHHHHH-hcCeEE
Confidence            57999999999999999875    69999999   999999877 777888877654 789999999998775 899999


Q ss_pred             eee
Q psy2071         231 LMN  233 (302)
Q Consensus       231 ~l~  233 (302)
                      +|+
T Consensus       514 ~l~  516 (563)
T TIGR00634       514 KVE  516 (563)
T ss_pred             EEE
Confidence            998

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR00618 sbcc exonuclease SbcC

Probab=98.96  E-value=7.8e-10  Score=115.64  Aligned_cols=83  Identities=7%  Similarity=-0.068  Sum_probs=72.5

Q ss_pred             CccccccccCHHHHHHHhccccCCC----------CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecC
Q psy2071         150 SPKTVLKYMTDGMLLREGMSDPMLE----------NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLD  218 (302)
Q Consensus       150 ~~~~~~~~lS~G~~qr~~la~al~~----------~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd  218 (302)
                      ...+.+..|||||++|++||++|+.          +|++|||||   |+.++|+.. ..+.+++......|.+|+++||+
T Consensus       943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDE---p~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~ 1019 (1042)
T TIGR00618       943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDE---GFGSLDEDSLDRAIGILDAIREGSKMIGIISHV 1019 (1042)
T ss_pred             CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecC---CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence            4456778999999999999999985          799999999   999999877 77778887665668899999999


Q ss_pred             HHHHHhhccCCCeeeec
Q psy2071         219 AGKFQQYFDNAPLMNVP  235 (302)
Q Consensus       219 ~~~~~~~~d~~~~l~i~  235 (302)
                      .+....++++|.|++..
T Consensus      1020 ~~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1020 PEFRERIPHRILVKKTN 1036 (1042)
T ss_pred             HHHHHhhCCEEEEEECC
Confidence            99999999999999843

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.96  E-value=6.5e-10  Score=96.63  Aligned_cols=65  Identities=15%  Similarity=0.147  Sum_probs=46.5

Q ss_pred             ccccCHHHHHHHhccccCCCCC---cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHH
Q psy2071         155 LKYMTDGMLLREGMSDPMLENY---QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKF  222 (302)
Q Consensus       155 ~~~lS~G~~qr~~la~al~~~p---~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~  222 (302)
                      ...+|.|+++.+.++..+...+   .++++||   |..++.|.+ ..+.+++......+.-++++||+...+
T Consensus       234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDE---pE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il  302 (303)
T PF13304_consen  234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDE---PENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL  302 (303)
T ss_dssp             GS---HHHHHHHHHHHHHHTTTTT-SEEEEES---SSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred             eccCCHHHHHHHHHHHHHhCcCCCCeEEEecC---CcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence            3447999999987766655544   9999999   999999887 666677766544567889999987543

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.93  E-value=1.3e-09  Score=95.10  Aligned_cols=151  Identities=15%  Similarity=0.100  Sum_probs=81.4

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccce--eeeeeecCCCC
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEV--GYSIRFEDCSS  150 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~  150 (302)
                      =+++|.++.|.|++||||||+..+++-......+.+.+....-............    +....+.+  ++. .+.... 
T Consensus        21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~----g~~~~~~~~~g~l-~i~~~~-   94 (234)
T PRK06067         21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESV----KIDISDFFLWGYL-RIFPLN-   94 (234)
T ss_pred             CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHC----CCChhHHHhCCCc-eEEecc-
Confidence            4678999999999999999999888533222233444444432211211111111    11111111  110 010000 


Q ss_pred             ccccccccCHHHHHHHhccccCCC--CCcEEEEcCCCCCCcchHHH----HHHHHHHHHHcCCCcEEEEEEecCHHH---
Q psy2071         151 PKTVLKYMTDGMLLREGMSDPMLE--NYQVILLDEAHERTLATDIL----MGVLKEVIKQRADLKLVIMSATLDAGK---  221 (302)
Q Consensus       151 ~~~~~~~lS~G~~qr~~la~al~~--~p~lliLDE~~~p~~~lD~~----~~~l~~ll~~~~~~~~~ii~~thd~~~---  221 (302)
                       .......+.++.+.+.....++.  +|+++++||   ++..+|..    ...+...+....+.+.|+++++|+...   
T Consensus        95 -~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs---~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~  170 (234)
T PRK06067         95 -TEGFEWNSTLANKLLELIIEFIKSKREDVIIIDS---LTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEE  170 (234)
T ss_pred             -ccccccCcchHHHHHHHHHHHHHhcCCCEEEEec---HHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHH
Confidence             01123345677777776666665  999999999   77443321    112222333334457788888886543   


Q ss_pred             ----HHhhccCCCeee
Q psy2071         222 ----FQQYFDNAPLMN  233 (302)
Q Consensus       222 ----~~~~~d~~~~l~  233 (302)
                          +..++|.++.|+
T Consensus       171 ~~~~~~~l~DgvI~L~  186 (234)
T PRK06067        171 LLSRIRSICDVYLKLR  186 (234)
T ss_pred             HHHHHHhheEEEEEEE
Confidence                566677776666

>PRK10869 recombination and repair protein; Provisional

Probab=98.89  E-value=2.6e-09  Score=104.09  Aligned_cols=73  Identities=14%  Similarity=0.147  Sum_probs=63.5

Q ss_pred             cccCHHHHHHHhccccCCC----CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCC
Q psy2071         156 KYMTDGMLLREGMSDPMLE----NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAP  230 (302)
Q Consensus       156 ~~lS~G~~qr~~la~al~~----~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~  230 (302)
                      +.+||||++|++||++++.    +|+++|+||   |++++|... ..+.+++....+ +.+||++||++..+ .+||+.+
T Consensus       429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DE---pd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~~~-~~ad~~~  503 (553)
T PRK10869        429 KVASGGELSRIALAIQVITARKMETPALIFDE---VDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQVA-GCGHQHF  503 (553)
T ss_pred             hhCCHHHHHHHHHHHHHHhccCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEE
Confidence            4599999999999999986    689999999   999999877 778888887654 58899999999866 7999998


Q ss_pred             eee
Q psy2071         231 LMN  233 (302)
Q Consensus       231 ~l~  233 (302)
                      ++.
T Consensus       504 ~v~  506 (553)
T PRK10869        504 FVS  506 (553)
T ss_pred             EEe
Confidence            887

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.88  E-value=1.1e-09  Score=95.99  Aligned_cols=158  Identities=13%  Similarity=0.104  Sum_probs=89.8

Q ss_pred             HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEE--EeecCchhhhHHH------------------------
Q psy2071          69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKA--VACTQPRRVAAMS------------------------  122 (302)
Q Consensus        69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~--i~~~~~~~~~~~~------------------------  122 (302)
                      |....+.+|+.++|+|++|||||||++.++.......+.+.  +.....+......                        
T Consensus         8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~   87 (249)
T cd01128           8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQV   87 (249)
T ss_pred             eeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHH
Confidence            34567889999999999999999999999987765533222  2212111111110                        


Q ss_pred             --HHHHhhhhhccccccceeeeeeecCCC--Cc----cccccccCHHH--------HHHHhccccCCCCCcEEEEcCCCC
Q psy2071         123 --VAQRVSEEMDCQLGQEVGYSIRFEDCS--SP----KTVLKYMTDGM--------LLREGMSDPMLENYQVILLDEAHE  186 (302)
Q Consensus       123 --~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~----~~~~~~lS~G~--------~qr~~la~al~~~p~lliLDE~~~  186 (302)
                        .....+..+. ..+.++...+.--...  ..    ...-..+|+|+        +||+++|++++.++++.+|     
T Consensus        88 ~~~~~~~a~~~~-~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l-----  161 (249)
T cd01128          88 AEMVLEKAKRLV-EHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII-----  161 (249)
T ss_pred             HHHHHHHHHHHH-HCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-----
Confidence              1111111111 1122322222100000  00    11123479999        9999999999999999999     


Q ss_pred             CCcchHHHH---HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         187 RTLATDILM---GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       187 p~~~lD~~~---~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +|..+|...   ..+   +......+.+.|+.+|.+.... .++.|.+|. .|.
T Consensus       162 ~T~~~d~~~~~~~~i---~~~~~~~~~~~ivls~~la~~~-~~paI~vl~-s~s  210 (249)
T cd01128         162 ATALVDTGSRMDDVI---FEEFKGTGNMELVLDRRLAERR-IFPAIDILK-SGT  210 (249)
T ss_pred             eeheecCCCcccchH---HHHHhcCCCcEEEEchHHhhCC-CCCeEEEcC-CCC
Confidence            566666211   122   2222323456777799987664 667888887 444

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.86  E-value=3.5e-09  Score=99.22  Aligned_cols=133  Identities=14%  Similarity=0.122  Sum_probs=90.7

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeec
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFE  146 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  146 (302)
                      .+. .+.+.+|+.++|+|+||+|||||++++++...++.|.+.+.|...+...     ..+.......   .+.+.+-+ 
T Consensus       147 ID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ev~-----e~~~~~l~~~---gl~~tvvv-  216 (432)
T PRK06793        147 IDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVK-----DFIRKELGEE---GMRKSVVV-  216 (432)
T ss_pred             Eec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcccHH-----HHHHHHhhhc---ccceeEEE-
Confidence            344 5899999999999999999999999999999998887777665543322     1111111110   01111111 


Q ss_pred             CCCCccccccccCHHHHHHHhccccCC-------CCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCH
Q psy2071         147 DCSSPKTVLKYMTDGMLLREGMSDPML-------ENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDA  219 (302)
Q Consensus       147 ~~~~~~~~~~~lS~G~~qr~~la~al~-------~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~  219 (302)
                            ......|.|++.|++.+.+.+       .++-+||+|+   +|...|.. ..+...+.+....|.+..+.||..
T Consensus       217 ------~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDs---lTr~a~A~-reisl~~~e~p~~G~~~~~~s~l~  286 (432)
T PRK06793        217 ------VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDS---VTRFADAR-RSVDIAVKELPIGGKTLLMESYMK  286 (432)
T ss_pred             ------EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc---hHHHHHHH-HHHHHHhcCCCCCCeeeeeeccch
Confidence                  122456889999998776655       7899999999   99999986 444445555554577777778743

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.83  E-value=7.7e-09  Score=87.05  Aligned_cols=46  Identities=20%  Similarity=0.185  Sum_probs=40.5

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC  112 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~  112 (302)
                      .+-+.+.++.|++++|+|||||||||+++.++++++++.|.+.+.+
T Consensus        15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied   60 (186)
T cd01130          15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED   60 (186)
T ss_pred             HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence            4556778999999999999999999999999999998888777643

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.82  E-value=2.8e-09  Score=104.55  Aligned_cols=78  Identities=18%  Similarity=0.129  Sum_probs=64.6

Q ss_pred             cccccCHHHHHHHhccccCC----------CCCcEEEEcCCCCCC-cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHH
Q psy2071         154 VLKYMTDGMLLREGMSDPML----------ENYQVILLDEAHERT-LATDILM-GVLKEVIKQRADLKLVIMSATLDAGK  221 (302)
Q Consensus       154 ~~~~lS~G~~qr~~la~al~----------~~p~lliLDE~~~p~-~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~  221 (302)
                      .+..||+||+||++||++|+          .+|+++||||   |+ .++|... ..+.+++...  .+.+|+++||+.+.
T Consensus       465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDE---p~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~  539 (562)
T PHA02562        465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDE---VFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHD  539 (562)
T ss_pred             ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEec---ccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhc
Confidence            55789999999999999887          5999999999   98 6899876 7777888776  37889999999655


Q ss_pred             HHhhccCCCeeeecCc
Q psy2071         222 FQQYFDNAPLMNVPGR  237 (302)
Q Consensus       222 ~~~~~d~~~~l~i~g~  237 (302)
                      . ..||++++|.-.|.
T Consensus       540 ~-~~~d~~~~l~~~~~  554 (562)
T PHA02562        540 P-QKFDRHLKMEKVGR  554 (562)
T ss_pred             h-hhhhcEEEEEEECC
Confidence            4 67899999884344

>PRK03918 chromosome segregation protein; Provisional

Probab=98.79  E-value=7.2e-09  Score=106.91  Aligned_cols=79  Identities=16%  Similarity=0.189  Sum_probs=64.2

Q ss_pred             cccccccCHHHHH------HHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071         152 KTVLKYMTDGMLL------REGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ  224 (302)
Q Consensus       152 ~~~~~~lS~G~~q------r~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~  224 (302)
                      ...+..|||||++      |+++|++++.+|+++||||   |+.++|+.. ..+.+++......+.+||++||+.+ +..
T Consensus       783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDE---p~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~-~~~  858 (880)
T PRK03918        783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDE---PTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE-LKD  858 (880)
T ss_pred             cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeC---CCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHH
Confidence            3566789999999      4556678889999999999   999999877 6677777654444678999999987 567


Q ss_pred             hccCCCeeee
Q psy2071         225 YFDNAPLMNV  234 (302)
Q Consensus       225 ~~d~~~~l~i  234 (302)
                      +||++++|.-
T Consensus       859 ~~d~~~~l~~  868 (880)
T PRK03918        859 AADYVIRVSL  868 (880)
T ss_pred             hCCeEEEEEe
Confidence            8999999983

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.79  E-value=1.2e-08  Score=96.36  Aligned_cols=150  Identities=12%  Similarity=0.118  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcc-ccccceeeee
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDC-QLGQEVGYSI  143 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~  143 (302)
                      .+.+++ +.+.+|++++|+|+||+|||||+++|++...++.|.+.+.|...+.+....     ...... .....+.+..
T Consensus       147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~-----~~~l~~~~l~r~v~vv~  220 (438)
T PRK07721        147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFI-----ERDLGPEGLKRSIVVVA  220 (438)
T ss_pred             hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHH-----HhhcChhhhcCeEEEEE
Confidence            456777 999999999999999999999999999999999998888776654332110     000100 1122233222


Q ss_pred             eecCCCCccccccccCHHHHHHHh-----ccccC--CCCCcEEEEc----------C----CCCC--CcchHHHH-HHHH
Q psy2071         144 RFEDCSSPKTVLKYMTDGMLLREG-----MSDPM--LENYQVILLD----------E----AHER--TLATDILM-GVLK  199 (302)
Q Consensus       144 ~~~~~~~~~~~~~~lS~G~~qr~~-----la~al--~~~p~lliLD----------E----~~~p--~~~lD~~~-~~l~  199 (302)
                      ..           .-|.+++.+..     +|--+  -.+-=+|++|          |    .++|  +.++|+.. ..+.
T Consensus       221 ~~-----------~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~  289 (438)
T PRK07721        221 TS-----------DQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILP  289 (438)
T ss_pred             CC-----------CCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence            11           11223333321     11111  1222245666          1    2234  56888777 6788


Q ss_pred             HHHHHcC--CCcE-----EEEEEecCHHHHHhhccCCCeee
Q psy2071         200 EVIKQRA--DLKL-----VIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       200 ~ll~~~~--~~~~-----~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      +++++..  +.|.     ||++.+||+++  .+||++..+.
T Consensus       290 ~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~  328 (438)
T PRK07721        290 KLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGIL  328 (438)
T ss_pred             HHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEec
Confidence            8887655  3574     89999999985  8999998876

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.78  E-value=2.7e-08  Score=78.13  Aligned_cols=117  Identities=20%  Similarity=0.152  Sum_probs=65.0

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcccccC-CCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSV-GAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTV  154 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~-G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  154 (302)
                      .+..+.|+||+||||||+++.++..+.... +.+.+.+............                       .......
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~   57 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-----------------------LIIVGGK   57 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-----------------------hhhhhcc
Confidence            367899999999999999999998776544 3333333222111100000                       0011112


Q ss_pred             ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH------HHHHHcCCCcEEEEEEecC
Q psy2071         155 LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK------EVIKQRADLKLVIMSATLD  218 (302)
Q Consensus       155 ~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~------~ll~~~~~~~~~ii~~thd  218 (302)
                      .....+++..+..++.+--..|++|++||+   ..-.+... ....      .........+..+|.++|.
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       58 KASGSGELRLRLALALARKLKPDVLILDEI---TSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEECC---cccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            234456666777777777767999999994   33333222 1111      1122223345677777774

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.76  E-value=1.2e-08  Score=86.68  Aligned_cols=120  Identities=16%  Similarity=0.143  Sum_probs=66.2

Q ss_pred             CEEEEEccCCCCccchhhhhhhccccc-CCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcccccc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEYSKS-VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK  156 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~~~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  156 (302)
                      .+++|.||+||||||+++.+++.+.+. .|.+....... ...        ..       ....+..+...  ..+  ..
T Consensus         2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~-E~~--------~~-------~~~~~i~q~~v--g~~--~~   61 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI-EFV--------HE-------SKRSLINQREV--GLD--TL   61 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc-ccc--------cc-------Cccceeeeccc--CCC--cc
Confidence            368999999999999999988877644 34544433221 100        00       00011111000  000  01


Q ss_pred             ccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       157 ~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      .++      -+++++|..+|+++++||   +.   |...  +..+++. ...|..+++++|..+.. ..++|+..+.
T Consensus        62 ~~~------~~i~~aLr~~pd~ii~gE---ir---d~e~--~~~~l~~-a~~G~~v~~t~Ha~~~~-~~~~Rl~~l~  122 (198)
T cd01131          62 SFE------NALKAALRQDPDVILVGE---MR---DLET--IRLALTA-AETGHLVMSTLHTNSAA-KTIDRIIDVF  122 (198)
T ss_pred             CHH------HHHHHHhcCCcCEEEEcC---CC---CHHH--HHHHHHH-HHcCCEEEEEecCCcHH-HHHhHHHhhc
Confidence            111      246778888999999999   53   3221  1222221 23477889999987654 4567765553

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.76  E-value=2.4e-09  Score=100.47  Aligned_cols=49  Identities=20%  Similarity=0.260  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQP  115 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~  115 (302)
                      .+++++++.+++||+++|+|||||||||||+  +|+..|++| .+.+.|++.
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~   69 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHS   69 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEEC
Confidence            4688999999999999999999999999999  677788888 699988764

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=98.69  E-value=2.3e-08  Score=104.43  Aligned_cols=82  Identities=9%  Similarity=-0.007  Sum_probs=67.7

Q ss_pred             cccccccCHHHHHHHhccccCCC--------CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHH
Q psy2071         152 KTVLKYMTDGMLLREGMSDPMLE--------NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKF  222 (302)
Q Consensus       152 ~~~~~~lS~G~~qr~~la~al~~--------~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~  222 (302)
                      .+.+..|||||+++++||++|+.        +|++||+||   |+.++|+.. ..+.+++..+.+.|.+|+++||..+..
T Consensus       944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDE---p~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~ 1020 (1047)
T PRK10246        944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDE---GFGTLDSETLDTALDALDALNASGKTIGVISHVEAMK 1020 (1047)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeC---CCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHH
Confidence            45678899999999999999985        899999999   999999887 778888887766799999999977666


Q ss_pred             HhhccCCCeeeecC
Q psy2071         223 QQYFDNAPLMNVPG  236 (302)
Q Consensus       223 ~~~~d~~~~l~i~g  236 (302)
                      .++..++.|-..+|
T Consensus      1021 ~~i~~qi~V~k~~g 1034 (1047)
T PRK10246       1021 ERIPVQIKVKKING 1034 (1047)
T ss_pred             HhccceEEEEECCC
Confidence            66665555555334

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.69  E-value=1.8e-09  Score=81.89  Aligned_cols=46  Identities=11%  Similarity=0.115  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR  117 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~  117 (302)
                      +++++++.+++|++++|+||||||||||++++.      .|.+.+.+.+...
T Consensus         4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~   49 (107)
T cd00820           4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVE   49 (107)
T ss_pred             EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHH
Confidence            356778899999999999999999999999975      7888888876543

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.66  E-value=3.7e-08  Score=104.26  Aligned_cols=80  Identities=13%  Similarity=0.122  Sum_probs=66.3

Q ss_pred             ccccccccCHHHHHHHhccccC----CCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhh
Q psy2071         151 PKTVLKYMTDGMLLREGMSDPM----LENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQY  225 (302)
Q Consensus       151 ~~~~~~~lS~G~~qr~~la~al----~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~  225 (302)
                      .+..+..|||||+++++||+++    +..|+++||||   |+.++|+.. ..+.+++..... +.++|++||+++.+ .+
T Consensus      1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE---~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~~-~~ 1157 (1179)
T TIGR02168      1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDE---VDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGTM-EV 1157 (1179)
T ss_pred             ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecC---ccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhHH-HH
Confidence            3456788999999999999987    46779999999   999999877 777788876654 36789999998865 68


Q ss_pred             ccCCCeeeec
Q psy2071         226 FDNAPLMNVP  235 (302)
Q Consensus       226 ~d~~~~l~i~  235 (302)
                      ||+++.+...
T Consensus      1158 ~d~~~~~~~~ 1167 (1179)
T TIGR02168      1158 ADQLYGVTMQ 1167 (1179)
T ss_pred             hhhHeeeeec
Confidence            9999888744

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.66  E-value=3.4e-07  Score=72.46  Aligned_cols=36  Identities=25%  Similarity=0.262  Sum_probs=28.9

Q ss_pred             HHHHHHHHHh--CCEEEEEccCCCCccchhhhhhhccc
Q psy2071          67 RTEFMTLLAQ--NQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        67 ~~~i~~~i~~--g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      ...+...+..  +..+.|.||+|+||||+++.++..+.
T Consensus         7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009           7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            4445555555  88999999999999999999988764

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.64  E-value=2.4e-07  Score=84.22  Aligned_cols=127  Identities=22%  Similarity=0.236  Sum_probs=75.2

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcccc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTV  154 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  154 (302)
                      .+|++++++|||||||||++..+++.+.+..+.+.+.+.++.+.++..+........      .+.+.......   +  
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~------~i~~~~~~~~~---d--  180 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERV------GVPVIAQKEGA---D--  180 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHc------CceEEEeCCCC---C--
Confidence            368899999999999999999999999887789999888887766544433322222      22222221110   0  


Q ss_pred             ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHH-------cCCCcEEEEEEecC
Q psy2071         155 LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQ-------RADLKLVIMSATLD  218 (302)
Q Consensus       155 ~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~-------~~~~~~~ii~~thd  218 (302)
                           ......-++..+...+++++|+|=++..... +..+..+..+.+.       .....+.|+.+|..
T Consensus       181 -----pa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~-~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g  245 (318)
T PRK10416        181 -----PASVAFDAIQAAKARGIDVLIIDTAGRLHNK-TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG  245 (318)
T ss_pred             -----HHHHHHHHHHHHHhCCCCEEEEeCCCCCcCC-HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC
Confidence                 0112222345556789999999995432222 2223344444321       12334566666643

>PRK01156 chromosome segregation protein; Provisional

Probab=98.64  E-value=4.5e-08  Score=101.21  Aligned_cols=80  Identities=14%  Similarity=0.098  Sum_probs=63.8

Q ss_pred             ccccccCHHHHHHHhc------cccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHH-cCC-Cc-EEEEEEecCHHHH
Q psy2071         153 TVLKYMTDGMLLREGM------SDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQ-RAD-LK-LVIMSATLDAGKF  222 (302)
Q Consensus       153 ~~~~~lS~G~~qr~~l------a~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~-~~~-~~-~~ii~~thd~~~~  222 (302)
                      ..+..|||||++++++      |++++.+|++++|||   ||.++|+.. ..+.+++.. ... .+ .+++++||+.+.+
T Consensus       797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDE---pt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~  873 (895)
T PRK01156        797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDE---PTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL  873 (895)
T ss_pred             CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeC---CCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH
Confidence            4567799999999865      589999999999999   999999876 666676653 222 23 4799999999866


Q ss_pred             HhhccCCCeeeecC
Q psy2071         223 QQYFDNAPLMNVPG  236 (302)
Q Consensus       223 ~~~~d~~~~l~i~g  236 (302)
                       .+||+++.+...|
T Consensus       874 -~~~d~ii~~~~~~  886 (895)
T PRK01156        874 -SVADVAYEVKKSS  886 (895)
T ss_pred             -HhcCeEEEEEecC
Confidence             6899999998444

>TIGR00606 rad50 rad50

Probab=98.63  E-value=3.4e-08  Score=105.55  Aligned_cols=70  Identities=17%  Similarity=0.143  Sum_probs=58.2

Q ss_pred             cccCHHHHH------HHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc-----CCCcEEEEEEecCHHHHH
Q psy2071         156 KYMTDGMLL------REGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR-----ADLKLVIMSATLDAGKFQ  223 (302)
Q Consensus       156 ~~lS~G~~q------r~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~-----~~~~~~ii~~thd~~~~~  223 (302)
                      ..||+||+|      |++||++++.+|++|||||   ||+++|+.. ..+...+...     ...+.+||++|||++++.
T Consensus      1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDE---Pt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606      1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDE---PTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred             CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeC---CcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence            579999999      9999999999999999999   999999776 5454444432     234789999999999999


Q ss_pred             hhccC
Q psy2071         224 QYFDN  228 (302)
Q Consensus       224 ~~~d~  228 (302)
                      .+|..
T Consensus      1275 ~~~~~ 1279 (1311)
T TIGR00606      1275 LLGRS 1279 (1311)
T ss_pred             HHhhc
Confidence            98853

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.63  E-value=7.1e-08  Score=98.53  Aligned_cols=136  Identities=15%  Similarity=0.132  Sum_probs=77.8

Q ss_pred             HHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc-cccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeec
Q psy2071          68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY-SKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFE  146 (302)
Q Consensus        68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~-~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  146 (302)
                      .++... ..+.++.|.|||++||||++++++... -...|. .+-+..    +            ...+.+.+  ..+. 
T Consensus       599 nd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~-~VPa~~----a------------~i~~~d~I--~tri-  657 (854)
T PRK05399        599 NDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS-FVPAES----A------------RIGIVDRI--FTRI-  657 (854)
T ss_pred             cceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC-ceeccc----e------------EecccCee--eecc-
Confidence            344443 567899999999999999999986542 112231 111000    0            00111111  1111 


Q ss_pred             CCCCccccccccCHHHHHHHhccccC--CCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCC-cEEEEEEecCHHHHH
Q psy2071         147 DCSSPKTVLKYMTDGMLLREGMSDPM--LENYQVILLDEAHERTLATDILMGVLKEVIKQRADL-KLVIMSATLDAGKFQ  223 (302)
Q Consensus       147 ~~~~~~~~~~~lS~G~~qr~~la~al--~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~-~~~ii~~thd~~~~~  223 (302)
                        ...+.....+|.-|.....++..|  +.+++++||||.+--|+..|.. .+...+++...+. +..++++||. .++.
T Consensus       658 --ga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~-aia~aile~l~~~~~~~~l~aTH~-~el~  733 (854)
T PRK05399        658 --GASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL-SIAWAVAEYLHDKIGAKTLFATHY-HELT  733 (854)
T ss_pred             --CcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH-HHHHHHHHHHHhcCCceEEEEech-HHHH
Confidence              123344455677666666665554  4589999999944447778833 3344444433333 5788999999 5566


Q ss_pred             hhccC
Q psy2071         224 QYFDN  228 (302)
Q Consensus       224 ~~~d~  228 (302)
                      .++++
T Consensus       734 ~l~~~  738 (854)
T PRK05399        734 ELEEK  738 (854)
T ss_pred             HHhhh
Confidence            67765

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.54  E-value=1.3e-08  Score=97.94  Aligned_cols=148  Identities=9%  Similarity=0.097  Sum_probs=79.0

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhh--hcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecC---
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWC--VEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFED---  147 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~--g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---  147 (302)
                      =+.+|.++.|.|++|||||||..+++  |........+++...+.. ......+..+.........+...+.+....   
T Consensus        17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~-~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~   95 (484)
T TIGR02655        17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESP-QDIIKNARSFGWDLQKLVDEGKLFILDASPDPE   95 (484)
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCH-HHHHHHHHHcCCCHHHHhhcCceEEEecCchhc
Confidence            36789999999999999999988874  333223334445443321 111122222111110000000001110000   


Q ss_pred             ----------CCCccccccccCHHHHHHHhccc--cCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEE
Q psy2071         148 ----------CSSPKTVLKYMTDGMLLREGMSD--PMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSA  215 (302)
Q Consensus       148 ----------~~~~~~~~~~lS~G~~qr~~la~--al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~  215 (302)
                                ....+.....+|+|++||+.|+.  ++...|+.+            -.....+.++++..++.++|++++
T Consensus        96 ~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~------------~~~r~~l~~Li~~L~~~g~TvLLt  163 (484)
T TIGR02655        96 GQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV------------SVVRREIFRLVARLKQIGVTTVMT  163 (484)
T ss_pred             cccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch------------HHHHHHHHHHHHHHHHCCCEEEEE
Confidence                      00112344568889999888884  443333221            011244556666656679999999


Q ss_pred             ecCHHH--------H-HhhccCCCeee
Q psy2071         216 TLDAGK--------F-QQYFDNAPLMN  233 (302)
Q Consensus       216 thd~~~--------~-~~~~d~~~~l~  233 (302)
                      ||+.+.        + ..+||.|+.|+
T Consensus       164 sh~~~~~~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       164 TERIEEYGPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             ecCcccccccccCCceeEeeeeEEEEE
Confidence            998764        2 56788888775

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.54  E-value=5.1e-08  Score=92.72  Aligned_cols=59  Identities=24%  Similarity=0.309  Sum_probs=44.9

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccCC--CEEEeecCchhhhHHHHHHHhhhhh
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVACTQPRRVAAMSVAQRVSEEM  131 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~~~~~~~~~~~~~~~~~~~~~  131 (302)
                      .+..|.+++++|||||||||++..|++.+....|  .+.+...+..++++..+....+...
T Consensus       252 ~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~Aeil  312 (484)
T PRK06995        252 LLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKIL  312 (484)
T ss_pred             cccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHh
Confidence            3567899999999999999999999998877766  4656666777777666555544443

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.46  E-value=1.8e-06  Score=76.53  Aligned_cols=62  Identities=23%  Similarity=0.260  Sum_probs=42.3

Q ss_pred             cccCCCCCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCC-EEEEEccCCCCccchhhhhhhcccc
Q psy2071          36 NLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQ-CIVLVGETGSGKTTQIPQWCVEYSK  103 (302)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~-i~~liG~nGsGKSTll~~i~g~~~~  103 (302)
                      .+..+||...+...-+|.-..      -..+...+...++++. +++|+||+|+||||+++.++..+.+
T Consensus         7 ~l~~~pF~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~   69 (269)
T TIGR03015         7 GFTTKPFQLLPDPDFFYPSKG------HKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ   69 (269)
T ss_pred             CCCCCCCCCCCCHHHhCCCHH------HHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence            456678876554332222111      1235666677777765 8999999999999999999887664

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.45  E-value=4e-07  Score=83.90  Aligned_cols=37  Identities=27%  Similarity=0.325  Sum_probs=29.3

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhccccc-CCCEEE
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-VGAKAV  110 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-~G~~~i  110 (302)
                      ..++.++.|.||+||||||+++.+++.+... .+.+..
T Consensus       119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~t  156 (343)
T TIGR01420       119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIIT  156 (343)
T ss_pred             hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEE
Confidence            4578899999999999999999998876533 455444

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.44  E-value=8.8e-07  Score=83.11  Aligned_cols=126  Identities=18%  Similarity=0.203  Sum_probs=66.3

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcccccCC--CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPK  152 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  152 (302)
                      +.|++++|+||||+||||++..|++.+....|  .+.+...+..+++...+....+..++        ....  ...   
T Consensus       189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilG--------vp~~--~v~---  255 (420)
T PRK14721        189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLG--------VSVR--SIK---  255 (420)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcC--------Ccee--cCC---
Confidence            57899999999999999999999886422222  23333445556665555444333221        1111  000   


Q ss_pred             ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHc-CCCcEEEEEEecCHHHHH
Q psy2071         153 TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQR-ADLKLVIMSATLDAGKFQ  223 (302)
Q Consensus       153 ~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~-~~~~~~ii~~thd~~~~~  223 (302)
                            + .....  .+..-+.+.+++++|.++.... .+.....+..+.... ......++.+|...+.+.
T Consensus       256 ------~-~~dl~--~al~~l~~~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~  317 (420)
T PRK14721        256 ------D-IADLQ--LMLHELRGKHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD  317 (420)
T ss_pred             ------C-HHHHH--HHHHHhcCCCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH
Confidence                  0 11111  1222366889999999643322 122335555543322 123456667775444433

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.43  E-value=3.5e-07  Score=84.53  Aligned_cols=127  Identities=18%  Similarity=0.245  Sum_probs=72.2

Q ss_pred             HHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC--CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCC
Q psy2071          71 MTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDC  148 (302)
Q Consensus        71 ~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  148 (302)
                      ...+++|.+++|+||||+||||++..|++.+....|  .+.+...+..+.+...+....+..++        ..+...  
T Consensus       131 ~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~g--------v~~~~~--  200 (374)
T PRK14722        131 DALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG--------VPVHAV--  200 (374)
T ss_pred             CccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcC--------CceEec--
Confidence            345778999999999999999999999887644444  45566666666666655554443322        111110  


Q ss_pred             CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc-CCCcEEEEEEecCHHH
Q psy2071         149 SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR-ADLKLVIMSATLDAGK  221 (302)
Q Consensus       149 ~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~~~  221 (302)
                      .         +++...+ .+.  -+.+.+++|+|+++..  ..|... +.+..+.... ......|+.+|...+.
T Consensus       201 ~---------~~~~l~~-~l~--~l~~~DlVLIDTaG~~--~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~  261 (374)
T PRK14722        201 K---------DGGDLQL-ALA--ELRNKHMVLIDTIGMS--QRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT  261 (374)
T ss_pred             C---------CcccHHH-HHH--HhcCCCEEEEcCCCCC--cccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence            0         1111111 111  2467899999996543  334333 4444442211 1234666777765543

>PF00488 MutS_V: MutS domain V C-terminus

Probab=98.41  E-value=6.7e-07  Score=78.01  Aligned_cols=124  Identities=17%  Similarity=0.162  Sum_probs=58.1

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcccc-cCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSK-SVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVL  155 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~-~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  155 (302)
                      +.++.|.|||.+||||++++++-..-- ..|. .+    |            +........+.+..  ++..   .+...
T Consensus        43 ~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~-~V----P------------A~~~~i~~~d~I~t--~~~~---~d~~~  100 (235)
T PF00488_consen   43 SRIIIITGPNMSGKSTFLKQIGLIVILAQIGC-FV----P------------AESAEIPIFDRIFT--RIGD---DDSIE  100 (235)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHHHHHTTT---B----S------------SSEEEEE--SEEEE--EES------SST
T ss_pred             eeEEEEeCCCccchhhHHHHHHHHhhhhhcCc-ee----e------------ecccccccccEEEe--eccc---ccccc
Confidence            358999999999999999998543211 1120 00    0            00001111122211  2211   12222


Q ss_pred             cccCHHH--HHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCC-CcEEEEEEecCHHHHH
Q psy2071         156 KYMTDGM--LLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRAD-LKLVIMSATLDAGKFQ  223 (302)
Q Consensus       156 ~~lS~G~--~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~-~~~~ii~~thd~~~~~  223 (302)
                      ..+|.=+  .+++.-....+.+-.++|+||.+--|+..|-. .+...+++.+.+ .+..++++||+.+...
T Consensus       101 ~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~-ai~~aile~l~~~~~~~~i~~TH~~~l~~  170 (235)
T PF00488_consen  101 SGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGI-AIAIAILEYLLEKSGCFVIIATHFHELAE  170 (235)
T ss_dssp             TSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHH-HHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred             cccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHH-HHHHHHHHHHHHhccccEEEEeccchhHH
Confidence            3344432  23322222225678899999954444444422 333334443333 4678899999887543

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.40  E-value=7.5e-07  Score=88.73  Aligned_cols=58  Identities=29%  Similarity=0.361  Sum_probs=45.5

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCC--CEEEeecCchhhhHHHHHHHhhhhh
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVACTQPRRVAAMSVAQRVSEEM  131 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~~~~~~~~~~~~~~~~~~~~~  131 (302)
                      ++.|++++++||||+||||++..|++.+....|  .+.+...+..++++..+........
T Consensus       182 ~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~  241 (767)
T PRK14723        182 LAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRIL  241 (767)
T ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhC
Confidence            345889999999999999999999998866666  5677777777877766665555443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.36  E-value=5.3e-07  Score=95.63  Aligned_cols=77  Identities=17%  Similarity=0.156  Sum_probs=64.3

Q ss_pred             ccccccCHHHHHHHhccccCCC----CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         153 TVLKYMTDGMLLREGMSDPMLE----NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       153 ~~~~~lS~G~~qr~~la~al~~----~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                      ..+..|||||++++++|.+++.    .|+++||||   |+.++|+.. ..+.+++..... +..+|++||+...+ .+||
T Consensus      1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE---~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~~~-~~~d 1144 (1164)
T TIGR02169      1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDE---VDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSPMI-EYAD 1144 (1164)
T ss_pred             CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecc---cccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHH-Hhcc
Confidence            4567899999999999999874    789999999   999999887 778888876654 36688889998755 8999


Q ss_pred             CCCeeee
Q psy2071         228 NAPLMNV  234 (302)
Q Consensus       228 ~~~~l~i  234 (302)
                      +++.+..
T Consensus      1145 ~~~~~~~ 1151 (1164)
T TIGR02169      1145 RAIGVTM 1151 (1164)
T ss_pred             eeEeEEE
Confidence            9988873

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK09183 transposase/IS protein; Provisional

Probab=98.36  E-value=9.5e-07  Score=78.22  Aligned_cols=120  Identities=19%  Similarity=0.281  Sum_probs=67.1

Q ss_pred             HHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeec
Q psy2071          68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFE  146 (302)
Q Consensus        68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  146 (302)
                      .++.+ +++|+.++|+||+|+|||||..+|+..... .| .+.+....       .+...+....              .
T Consensus        94 ~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~-~G~~v~~~~~~-------~l~~~l~~a~--------------~  150 (259)
T PRK09183         94 RSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVR-AGIKVRFTTAA-------DLLLQLSTAQ--------------R  150 (259)
T ss_pred             hcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeHH-------HHHHHHHHHH--------------H
Confidence            33344 889999999999999999999998655433 34 44332110       0000000000              0


Q ss_pred             CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhhc
Q psy2071         147 DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYF  226 (302)
Q Consensus       147 ~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~  226 (302)
                           .        |...++ +. ..+..++++|+||.+.-...- .....+.+++..+.+.+.+|+.+....+.|...+
T Consensus       151 -----~--------~~~~~~-~~-~~~~~~dlLiiDdlg~~~~~~-~~~~~lf~li~~r~~~~s~iiTsn~~~~~w~~~~  214 (259)
T PRK09183        151 -----Q--------GRYKTT-LQ-RGVMAPRLLIIDEIGYLPFSQ-EEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTF  214 (259)
T ss_pred             -----C--------CcHHHH-HH-HHhcCCCEEEEcccccCCCCh-HHHHHHHHHHHHHHhcCcEEEecCCCHHHHHHHh
Confidence                 0        000010 00 113578999999965322111 2225677777766555677777667777777665

>PRK02224 chromosome segregation protein; Provisional

Probab=98.35  E-value=5e-07  Score=93.33  Aligned_cols=76  Identities=17%  Similarity=0.142  Sum_probs=61.6

Q ss_pred             cccccCHHHHH------HHhccccCCCC-----C-cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcE-EEEEEecCH
Q psy2071         154 VLKYMTDGMLL------REGMSDPMLEN-----Y-QVILLDEAHERTLATDILM-GVLKEVIKQRADLKL-VIMSATLDA  219 (302)
Q Consensus       154 ~~~~lS~G~~q------r~~la~al~~~-----p-~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~-~ii~~thd~  219 (302)
                      .+..||||+++      |++++++++.+     | .++|+||   |+.++|+.. ..+.+++......|. +||++||+.
T Consensus       778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDE---p~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~  854 (880)
T PRK02224        778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDE---PTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDD  854 (880)
T ss_pred             ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecC---CcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECCh
Confidence            45789999999      88888888763     2 6799999   999999876 667777776655454 799999999


Q ss_pred             HHHHhhccCCCeee
Q psy2071         220 GKFQQYFDNAPLMN  233 (302)
Q Consensus       220 ~~~~~~~d~~~~l~  233 (302)
                      +.+. .||+++.|.
T Consensus       855 ~~~~-~ad~~~~~~  867 (880)
T PRK02224        855 ELVG-AADDLVRVE  867 (880)
T ss_pred             HHHH-hcCeeEEee
Confidence            8885 699999886

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.33  E-value=1.9e-06  Score=82.42  Aligned_cols=51  Identities=31%  Similarity=0.430  Sum_probs=37.8

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccC--CCEEEeecCchhhhHHHH
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSV--GAKAVACTQPRRVAAMSV  123 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~--G~~~i~~~~~~~~~~~~~  123 (302)
                      .+++|++++|+||+|+||||++..|+..+....  ..+.+...+..+.+...+
T Consensus       346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQ  398 (559)
T PRK12727        346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQ  398 (559)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHH
Confidence            357899999999999999999999887654332  357676677666654433

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.32  E-value=1.4e-06  Score=80.37  Aligned_cols=137  Identities=26%  Similarity=0.330  Sum_probs=92.6

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcccccCC--CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPK  152 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  152 (302)
                      .++.+++|+||+|.||||.|--|+..+....|  .+-+.-++..|+++..+.+..+..++.++        ..  .....
T Consensus       201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~--------~v--v~~~~  270 (407)
T COG1419         201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL--------EV--VYSPK  270 (407)
T ss_pred             ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce--------EE--ecCHH
Confidence            44899999999999999999888877663333  56677788899999999888887765432        11  11111


Q ss_pred             ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCC-cEEEEEEecCHHHHHhhccCCC
Q psy2071         153 TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADL-KLVIMSATLDAGKFQQYFDNAP  230 (302)
Q Consensus       153 ~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~-~~~ii~~thd~~~~~~~~d~~~  230 (302)
                                  =+..|...+.+.++|+.|=+|.  +..|... ..+.+++..-.+. -.-++++|-.-+.+.++.++..
T Consensus       271 ------------el~~ai~~l~~~d~ILVDTaGr--s~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~  336 (407)
T COG1419         271 ------------ELAEAIEALRDCDVILVDTAGR--SQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFS  336 (407)
T ss_pred             ------------HHHHHHHHhhcCCEEEEeCCCC--CccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhc
Confidence                        1233444577889999999754  4566555 7777777654333 4567777876666666666544


Q ss_pred             eeeec
Q psy2071         231 LMNVP  235 (302)
Q Consensus       231 ~l~i~  235 (302)
                      .+.+.
T Consensus       337 ~~~i~  341 (407)
T COG1419         337 LFPID  341 (407)
T ss_pred             cCCcc
Confidence            44433

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.30  E-value=1.9e-06  Score=74.81  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=23.4

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhh
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWC   98 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~   98 (302)
                      =+++|++++|.|++||||||+..+++
T Consensus        16 Gi~~G~~~~i~G~~G~GKT~l~~~~~   41 (229)
T TIGR03881        16 GIPRGFFVAVTGEPGTGKTIFCLHFA   41 (229)
T ss_pred             CCcCCeEEEEECCCCCChHHHHHHHH
Confidence            47899999999999999999988765

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.28  E-value=3e-06  Score=74.12  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=19.5

Q ss_pred             CCEEEEEccCCCCccchhhhhh
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWC   98 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~   98 (302)
                      |.+..|+||.|+|||||.-+++
T Consensus         1 g~~~ll~g~~G~GKS~lal~la   22 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLA   22 (239)
T ss_pred             CceeEEEcCCCCCHHHHHHHHH
Confidence            6788999999999999987775

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.28  E-value=5.3e-06  Score=77.29  Aligned_cols=129  Identities=19%  Similarity=0.285  Sum_probs=77.8

Q ss_pred             CCEEEEEccCCCCccchhhhhhhccccc----CCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKS----VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPK  152 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~----~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  152 (302)
                      +.+++++||||+||||.+..++..+...    ...+.+...++.+.++..+....+..++..        +....     
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp--------v~~~~-----  240 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP--------VKAIE-----  240 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc--------eEeeC-----
Confidence            4689999999999999998888765532    236777777777877776665555433222        11100     


Q ss_pred             ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcC-C-CcEEEEEEecCHHHHHhhccC
Q psy2071         153 TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRA-D-LKLVIMSATLDAGKFQQYFDN  228 (302)
Q Consensus       153 ~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~-~-~~~~ii~~thd~~~~~~~~d~  228 (302)
                            +.... .-.+.+  +.+.+++|+|+++........ +..+.+++.... . ...-|+.+|...+.+.+.+++
T Consensus       241 ------~~~~l-~~~L~~--~~~~DlVLIDTaGr~~~~~~~-l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~  308 (388)
T PRK12723        241 ------SFKDL-KEEITQ--SKDFDLVLVDTIGKSPKDFMK-LAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQ  308 (388)
T ss_pred             ------cHHHH-HHHHHH--hCCCCEEEEcCCCCCccCHHH-HHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHH
Confidence                  11111 112222  368999999997654433222 345566665432 2 356777787766666555544

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.28  E-value=5.2e-06  Score=76.80  Aligned_cols=50  Identities=26%  Similarity=0.369  Sum_probs=37.1

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR  126 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~  126 (302)
                      +.+++|+|||||||||++..|++.+......+.+...++.+.++..+...
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~  290 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQD  290 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH
Confidence            36899999999999999999988765332256666677777666555443

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=98.27  E-value=6.2e-07  Score=91.52  Aligned_cols=60  Identities=15%  Similarity=0.135  Sum_probs=48.5

Q ss_pred             cCCCCCcEEEEcCCCCCCcch-HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHH---------hhccCCCeee
Q psy2071         171 PMLENYQVILLDEAHERTLAT-DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQ---------QYFDNAPLMN  233 (302)
Q Consensus       171 al~~~p~lliLDE~~~p~~~l-D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~---------~~~d~~~~l~  233 (302)
                      .+..+|.++++||   |..++ |+.. ..+.++++..++.+.+++++||+++.+.         +.|+..++|.
T Consensus       648 ~l~~~p~illlDE---~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~  718 (818)
T PRK13830        648 RLTGAPSLIILDE---AWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLP  718 (818)
T ss_pred             hcCCCCcEEEEEC---chhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECC
Confidence            3568999999999   99999 5665 7788888766566789999999998886         5788777765

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.25  E-value=5.1e-06  Score=70.43  Aligned_cols=126  Identities=21%  Similarity=0.289  Sum_probs=75.2

Q ss_pred             CEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccccc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKY  157 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  157 (302)
                      .+++++||||+||||.+--|+..+.-..-.+.+...+..|.++..+.+..+..++..+..          ......    
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~----------~~~~~~----   67 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV----------ARTESD----   67 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE----------SSTTSC----
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccch----------hhcchh----
Confidence            478999999999999998888777655447888888999999998888877765432111          111111    


Q ss_pred             cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH-HHHHHHHHHHcCC-CcEEEEEEecCHHH
Q psy2071         158 MTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL-MGVLKEVIKQRAD-LKLVIMSATLDAGK  221 (302)
Q Consensus       158 lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~-~~~l~~ll~~~~~-~~~~ii~~thd~~~  221 (302)
                        .....+-++...--.+.+++|+|-++..  ..|.. ...+.++++.... .-..++.+|...+.
T Consensus        68 --~~~~~~~~l~~~~~~~~D~vlIDT~Gr~--~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~  129 (196)
T PF00448_consen   68 --PAEIAREALEKFRKKGYDLVLIDTAGRS--PRDEELLEELKKLLEALNPDEVHLVLSATMGQED  129 (196)
T ss_dssp             --HHHHHHHHHHHHHHTTSSEEEEEE-SSS--STHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred             --hHHHHHHHHHHHhhcCCCEEEEecCCcc--hhhHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence              1111222222222356899999996543  23333 3566666665433 34555666654433

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.25  E-value=6.3e-07  Score=70.45  Aligned_cols=29  Identities=31%  Similarity=0.486  Sum_probs=20.4

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcccc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEYSK  103 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~  103 (302)
                      +.+.++.|.|++|+||||+++.++..+..
T Consensus         2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~   30 (131)
T PF13401_consen    2 QSQRILVISGPPGSGKTTLIKRLARQLNA   30 (131)
T ss_dssp             -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred             CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence            45678999999999999999999876643

>TIGR00416 sms DNA repair protein RadA

Probab=98.22  E-value=1.6e-06  Score=82.61  Aligned_cols=138  Identities=14%  Similarity=0.116  Sum_probs=74.0

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCE-EEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCc
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAK-AVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSP  151 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  151 (302)
                      =+.+|+++.|.|++|+|||||+.+++.......+.+ ++.+.+... .....+.++.    .. .+++.+    ..    
T Consensus        90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~-qi~~ra~rlg----~~-~~~l~~----~~----  155 (454)
T TIGR00416        90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQ-QIKMRAIRLG----LP-EPNLYV----LS----  155 (454)
T ss_pred             CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHH-HHHHHHHHcC----CC-hHHeEE----cC----
Confidence            468999999999999999999999987665554554 455443321 1111111111    10 011110    00    


Q ss_pred             cccccccCHHHHHHHhccccCCCCCcEEEEcCCCC---CC----cc-hHHHHHHHHHHHHHcCCCcEEEEEEecCHHH--
Q psy2071         152 KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE---RT----LA-TDILMGVLKEVIKQRADLKLVIMSATLDAGK--  221 (302)
Q Consensus       152 ~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~---p~----~~-lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~--  221 (302)
                      .+     +-. ...-.+   --.+|+++++|...-   +.    .+ .......+..+.+..++.++|+++++|....  
T Consensus       156 e~-----~~~-~I~~~i---~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~  226 (454)
T TIGR00416       156 ET-----NWE-QICANI---EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGS  226 (454)
T ss_pred             CC-----CHH-HHHHHH---HhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCc
Confidence            01     111 111111   124799999998311   10    01 1112233333444345668999999996543  


Q ss_pred             ------HHhhccCCCeee
Q psy2071         222 ------FQQYFDNAPLMN  233 (302)
Q Consensus       222 ------~~~~~d~~~~l~  233 (302)
                            +..++|.++.|+
T Consensus       227 ~aG~~~le~lvD~VI~Le  244 (454)
T TIGR00416       227 IAGPKVLEHMVDTVLYFE  244 (454)
T ss_pred             cCCcccEeeeceEEEEEe
Confidence                  567788888776

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>COG4637 Predicted ATPase [General function prediction only]

Probab=98.22  E-value=4.9e-06  Score=73.87  Aligned_cols=69  Identities=17%  Similarity=0.229  Sum_probs=54.4

Q ss_pred             cCHHHHHHHhccccCCC--CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCC
Q psy2071         158 MTDGMLLREGMSDPMLE--NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAP  230 (302)
Q Consensus       158 lS~G~~qr~~la~al~~--~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~  230 (302)
                      ||.|+.+-++++-+|++  .|.+++|||   |-.+|-|-+ ..+-.++....+.+ -|+++||....+..+=-+..
T Consensus       271 LSDGTlRfl~l~t~Llsp~~p~ll~ldE---PE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~rLl~~~e~~~v  342 (373)
T COG4637         271 LSDGTLRFLALATLLLSPRPPPLLLLDE---PETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPRLLNAVEEHSV  342 (373)
T ss_pred             ccccHHHHHHHHHHHcCCCCCceeEecC---cccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHHHHhhccccce
Confidence            99999999999988876  589999999   999999766 66677776655444 67778999988876554443

>PRK13764 ATPase; Provisional

Probab=98.21  E-value=3.7e-06  Score=82.12  Aligned_cols=124  Identities=16%  Similarity=0.255  Sum_probs=70.6

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccc
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKT  153 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  153 (302)
                      ...+..+.|.|++||||||+++.++..+. ..|.+.+.-.++.....               ...+   .++...   . 
T Consensus       254 ~~~~~~ILIsG~TGSGKTTll~AL~~~i~-~~~riV~TiEDp~El~~---------------~~~i---~q~~~~---~-  310 (602)
T PRK13764        254 EERAEGILIAGAPGAGKSTFAQALAEFYA-DMGKIVKTMESPRDLQV---------------PPEI---TQYSKL---E-  310 (602)
T ss_pred             HhcCCEEEEECCCCCCHHHHHHHHHHHHh-hCCCEEEEECCCccccC---------------CCcc---eEEeec---c-
Confidence            45677899999999999999999988775 45654333333322110               0000   000000   0 


Q ss_pred             cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEec---------------C
Q psy2071         154 VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATL---------------D  218 (302)
Q Consensus       154 ~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~th---------------d  218 (302)
                          -+.....+    .+|..+|+++|+||.  + ..-+  +..+..+    ...|..++.+-|               +
T Consensus       311 ----~~~~~~~~----~lLR~rPD~IivGEi--R-d~Et--~~~~~~l----~~ag~GvigTlHA~sa~~Ai~Rl~~~v~  373 (602)
T PRK13764        311 ----GSMEETAD----ILLLVRPDYTIYDEM--R-KTED--FKIFADM----RLAGVGMVGVVHATRPIDAIQRFIGRVE  373 (602)
T ss_pred             ----ccHHHHHH----HHHhhCCCEEEECCC--C-CHHH--HHHHHHH----HHcCCeEEEEECCCCHHHHHHHHHhhhh
Confidence                00011111    126789999999993  2 2112  1222121    122555777778               7


Q ss_pred             HHHHHhhccCCCeeeecCcC
Q psy2071         219 AGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       219 ~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +..+.+++|+++.++ .|+.
T Consensus       374 lg~i~~iID~IV~I~-~G~I  392 (602)
T PRK13764        374 LGMIPQIVDTVIFIE-DGEV  392 (602)
T ss_pred             hchHHHhhcEEEEEe-CCEE
Confidence            888888999999888 6654

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.20  E-value=2.4e-06  Score=79.33  Aligned_cols=143  Identities=14%  Similarity=0.209  Sum_probs=93.1

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhh-hhccc--ccCCCEEEeec---------CchhhhHHHHHHHhhhhhcccccccee
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQW-CVEYS--KSVGAKAVACT---------QPRRVAAMSVAQRVSEEMDCQLGQEVG  140 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i-~g~~~--~~~G~~~i~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~v~  140 (302)
                      -|++| +++|+|.+=-||||||+.| .|.+.  |..|.-++.-.         +-+.+....+..++...+.        
T Consensus       241 GIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipGDGRE~VVT~~~avkirAEDGR~V~~vDISpFI~~LP~--------  311 (448)
T PF09818_consen  241 GIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPGDGREFVVTDPDAVKIRAEDGRSVEGVDISPFINNLPG--------  311 (448)
T ss_pred             eeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCCCCceEEEECCCceEEEecCCceEeCccchHHHhhCCC--------
Confidence            46788 9999999999999999998 35443  44554333211         1111111111111111110        


Q ss_pred             eeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHH--------------H-
Q psy2071         141 YSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVI--------------K-  203 (302)
Q Consensus       141 ~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll--------------~-  203 (302)
                           . .....-.-.+-||-+-|-..|..|+=...++||+||   +|+++..+.  ..+..++              + 
T Consensus       312 -----g-~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDE---DtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~  382 (448)
T PF09818_consen  312 -----G-KDTTCFSTENASGSTSQAANIMEALEAGARLLLIDE---DTSATNFMIRDERMQALVSKEKEPITPFIDRVRS  382 (448)
T ss_pred             -----C-CCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEcC---cccchheeehhHHHHHhhccCCCCcchHHHHHHH
Confidence                 0 000111235579999999999999999999999999   999987655  3333333              2 


Q ss_pred             HcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         204 QRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       204 ~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      .+.+.|+..|+++--...+...+|+|++|+
T Consensus       383 l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md  412 (448)
T PF09818_consen  383 LYEKLGVSTILVVGGSGDYFDVADRVIMMD  412 (448)
T ss_pred             HHHHcCceEEEEeccchhhHhhCCEEEEec
Confidence            224568888888888888999999999998

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.20  E-value=3.5e-07  Score=77.60  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=27.3

Q ss_pred             EEEEEccCCCCccchhhhhhhcccccCCCEEEeecC
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ  114 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~  114 (302)
                      +++|+|++||||||+.++|.+++  ..|.+.+.+.+
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D   34 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD   34 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence            58999999999999999999987  34556555544

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.19  E-value=1.4e-05  Score=73.11  Aligned_cols=53  Identities=28%  Similarity=0.320  Sum_probs=39.4

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhh
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSE  129 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~  129 (302)
                      +.+++++|+||+||||++..++..+......+.+...+..+.++..+....+.
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~  192 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAE  192 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHH
Confidence            46899999999999999999988776544467676667666666555544444

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.17  E-value=1.2e-05  Score=75.97  Aligned_cols=128  Identities=23%  Similarity=0.307  Sum_probs=71.8

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhccc-ccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEYS-KSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPK  152 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~~-~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  152 (302)
                      .+|++++++||||+||||++-.|++.+. -..| .+.+...++.+.++..+....+...+        ..+..  ..   
T Consensus       219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~--------vp~~~--~~---  285 (424)
T PRK05703        219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMG--------IPVEV--VY---  285 (424)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhC--------CceEc--cC---
Confidence            4578999999999999999988887665 2333 57777777766655444333332221        11110  00   


Q ss_pred             ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH-HcCC-CcEEEEEEecCHHHHHhhc
Q psy2071         153 TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK-QRAD-LKLVIMSATLDAGKFQQYF  226 (302)
Q Consensus       153 ~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~-~~~~-~~~~ii~~thd~~~~~~~~  226 (302)
                            +...... .+.  -+.++++||+|.++.  ...|... ..+.+++. .... ....|+.+|.....+.+++
T Consensus       286 ------~~~~l~~-~l~--~~~~~DlVlIDt~G~--~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~  351 (424)
T PRK05703        286 ------DPKELAK-ALE--QLRDCDVILIDTAGR--SQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIY  351 (424)
T ss_pred             ------CHHhHHH-HHH--HhCCCCEEEEeCCCC--CCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHH
Confidence                  1111111 111  134789999999643  3344333 55666665 2222 2366677767655554443

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.17  E-value=8.3e-07  Score=60.31  Aligned_cols=32  Identities=19%  Similarity=0.253  Sum_probs=25.4

Q ss_pred             HHHh-CCEEEEEccCCCCccchhhhhhhccccc
Q psy2071          73 LLAQ-NQCIVLVGETGSGKTTQIPQWCVEYSKS  104 (302)
Q Consensus        73 ~i~~-g~i~~liG~nGsGKSTll~~i~g~~~~~  104 (302)
                      .+.+ |.++.|+|+|||||||++.++.-.+.+.
T Consensus        18 ~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~   50 (62)
T PF13555_consen   18 DFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN   50 (62)
T ss_pred             eecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            3443 5699999999999999999987665443

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.15  E-value=1.2e-06  Score=76.16  Aligned_cols=46  Identities=13%  Similarity=0.106  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEE
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV  110 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i  110 (302)
                      ..+.++...-.+..+++|.|+||||||||++.+++.+++..|.+.+
T Consensus        21 ~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v   66 (229)
T PRK09270         21 RRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAI   66 (229)
T ss_pred             HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceE
Confidence            3344444333456799999999999999999999999999997544

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.15  E-value=2.1e-06  Score=81.20  Aligned_cols=50  Identities=18%  Similarity=0.172  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR  116 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~  116 (302)
                      +.+.+ +.+.+|+.++|+|+||+|||||+++|++...++.|.+...|...+
T Consensus       153 ~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~  202 (440)
T TIGR01026       153 SIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGR  202 (440)
T ss_pred             eeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecch
Confidence            45666 899999999999999999999999999998887775555555443

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.15  E-value=2.3e-06  Score=82.10  Aligned_cols=54  Identities=15%  Similarity=0.127  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR  117 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~  117 (302)
                      ..+++.+...+..|++++|+|+|||||||+++.+.|+++|.+|...+.++....
T Consensus       197 ~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s  250 (506)
T PRK09862        197 EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILS  250 (506)
T ss_pred             HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhh
Confidence            346788999999999999999999999999999999999999999888776543

>PRK04296 thymidine kinase; Provisional

Probab=98.14  E-value=1.2e-05  Score=67.79  Aligned_cols=55  Identities=20%  Similarity=0.232  Sum_probs=37.7

Q ss_pred             CCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecC---------H-HHHHhhccCCCeee
Q psy2071         173 LENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLD---------A-GKFQQYFDNAPLMN  233 (302)
Q Consensus       173 ~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd---------~-~~~~~~~d~~~~l~  233 (302)
                      -.++++|++||++.    ++.  ..+.++++.....|++++++.++         . ..+..++|.|..|+
T Consensus        76 ~~~~dvviIDEaq~----l~~--~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~  140 (190)
T PRK04296         76 GEKIDCVLIDEAQF----LDK--EQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELK  140 (190)
T ss_pred             CCCCCEEEEEcccc----CCH--HHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEee
Confidence            45789999999743    211  22344544445568899988888         2 46778899988877

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.13  E-value=7.3e-06  Score=75.51  Aligned_cols=57  Identities=26%  Similarity=0.289  Sum_probs=42.0

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhh
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSE  129 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~  129 (302)
                      .+.++++++++||+||||||++..++..+......+.+...++.+.++..+....+.
T Consensus       202 ~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae  258 (407)
T PRK12726        202 DLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYAD  258 (407)
T ss_pred             eecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhh
Confidence            456799999999999999999999887654333357677777777766655544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	302
3kx2_B	767	Crystal Structure Of Prp43p In Complex With Adp Len		2e-77
3kx2_B	767	Crystal Structure Of Prp43p In Complex With Adp Len		1e-10
2xau_A	773	Crystal Structure Of The Prp43p Deah-Box Rna Helica		2e-77
2xau_A	773	Crystal Structure Of The Prp43p Deah-Box Rna Helica		1e-10
3llm_A	235	Crystal Structure Analysis Of A Rna Helicase Length		7e-29
3i4u_A	270	Crystal Structure Analysis Of A Helicase Associated		8e-04

>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767

Iteration: 1
 Score =  285 bits (729), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 138/212 (65%), Positives = 171/212 (80%), Gaps = 1/212 (0%)
Query: 38  QVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQW 97
           ++NPFTG  +TP+Y ++ + R  LPV   R EF+ L   NQ +V VGETGSGKTTQIPQ+
Sbjct: 70  KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQF 129
Query: 98  CV-EYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
            + +    +    VACTQPRRVAAMSVAQRV+EEMD +LG+EVGYSIRFE+ +S KT+LK
Sbjct: 130 VLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILK 189
Query: 157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216
           YMTDGMLLRE M D  L  Y  I+LDEAHERTLATDILMG+LK+V+K+R DLK++IMSAT
Sbjct: 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSAT 249
Query: 217 LDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPE 248
           LDA KFQ+YF++APL+ VPGRT+PVE++YTPE
Sbjct: 250 LDAEKFQRYFNDAPLLAVPGRTYPVELYYTPE 281

>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 31/40 (77%)
Query: 257 LPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFK 296
           +P  F RP + KK ADDAK  FAH DGDH+TLLNVYHAFK
Sbjct: 551 VPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFK 590

>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773

Iteration: 1
 Score =  285 bits (729), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 138/212 (65%), Positives = 171/212 (80%), Gaps = 1/212 (0%)
Query: 38  QVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQW 97
           ++NPFTG  +TP+Y ++ + R  LPV   R EF+ L   NQ +V VGETGSGKTTQIPQ+
Sbjct: 70  KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQF 129
Query: 98  CV-EYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
            + +    +    VACTQPRRVAAMSVAQRV+EEMD +LG+EVGYSIRFE+ +S KT+LK
Sbjct: 130 VLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILK 189
Query: 157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216
           YMTDGMLLRE M D  L  Y  I+LDEAHERTLATDILMG+LK+V+K+R DLK++IMSAT
Sbjct: 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSAT 249
Query: 217 LDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPE 248
           LDA KFQ+YF++APL+ VPGRT+PVE++YTPE
Sbjct: 250 LDAEKFQRYFNDAPLLAVPGRTYPVELYYTPE 281

>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 31/40 (77%)
Query: 257 LPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFK 296
           +P  F RP + KK ADDAK  FAH DGDH+TLLNVYHAFK
Sbjct: 551 VPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFK 590

>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase Length = 235

Iteration: 1
 Score =  124 bits (311), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 116/190 (61%), Gaps = 9/190 (4%)
Query: 52  HELH---RKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE---YSKSV 105
           H+L    ++R  LPV ++ +E +  ++QN  +++ G TG GKTTQ+PQ+ ++    +   
Sbjct: 48  HDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRA 107
Query: 106 GAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDC-SSPKTVLKYMTDGMLL 164
               +  TQPRR++A+SVA+RV+ E   + G+  GYS+RFE     P   + + T G+LL
Sbjct: 108 AECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIXFCTVGVLL 167
Query: 165 REGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQ 224
           R+   +  +     +++DE HER + TD L+ VL++V++   ++++V+ SAT+D   F +
Sbjct: 168 RK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLXSATIDTSXFCE 225
Query: 225 YFDNAPLMNV 234
           YF N P++ V
Sbjct: 226 YFFNCPIIEV 235

>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 261 FTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFK 296
           F RP + +  AD  K +F   +GDHLTLL VY+++K
Sbjct: 84  FYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWK 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	1e-131
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	1e-14
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	1e-108
2jlq_A	451	Serine protease subunit NS3; ribonucleoprotein, nu	1e-51
2z83_A	459	Helicase/nucleoside triphosphatase; hydrolase, mem	2e-47
2v6i_A	431	RNA helicase; membrane, hydrolase, transmembrane,	2e-46
3o8b_A	666	HCV NS3 protease/helicase; ntpase, RNA, translocat	1e-43
2whx_A	618	Serine protease/ntpase/helicase NS3; transcription	4e-42
1yks_A	440	Genome polyprotein [contains: flavivirin protease	1e-41
2wv9_A	673	Flavivirin protease NS2B regulatory subunit, FLAV	2e-39
3i4u_A	270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	8e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	3e-05
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	5e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	7e-05
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	9e-05
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	1e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-04
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	2e-04
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	5e-04

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773

 Score =  389 bits (1001), Expect = e-131
 Identities = 138/219 (63%), Positives = 170/219 (77%), Gaps = 1/219 (0%)

Query: 33  IASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTT 92
              + ++NPFTG  +TP+Y ++ + R  LPV   R EF+ L   NQ +V VGETGSGKTT
Sbjct: 65  KLEDGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT 124

Query: 93  QIPQWCVEYSKSVGA-KAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSP 151
           QIPQ+ +           VACTQPRRVAAMSVAQRV+EEMD +LG+EVGYSIRFE+ +S 
Sbjct: 125 QIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSN 184

Query: 152 KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLV 211
           KT+LKYMTDGMLLRE M D  L  Y  I+LDEAHERTLATDILMG+LK+V+K+R DLK++
Sbjct: 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKII 244

Query: 212 IMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPP 250
           IMSATLDA KFQ+YF++APL+ VPGRT+PVE++YTPE  
Sbjct: 245 IMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQ 283

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 28/40 (70%), Positives = 30/40 (75%)

Query: 258 PQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQ 297
           P  F RP + KK ADDAK  FAH DGDH+TLLNVYHAFK 
Sbjct: 552 PNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKS 591

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235

 Score =  313 bits (805), Expect = e-108
 Identities = 72/229 (31%), Positives = 128/229 (55%), Gaps = 9/229 (3%)

Query: 10  DPYITKKNREERLATVNASVSTSIASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTE 69
           +P+ +    E  LA         I+ +L+               + ++R  LPV ++ +E
Sbjct: 12  NPWTSSNIDEGPLAFATPE---QISMDLKNELMYQLEQDHDLQAILQERELLPVKKFESE 68

Query: 70  FMTLLAQNQCIVLVGETGSGKTTQIPQWCVE--YSKSVGAKA-VACTQPRRVAAMSVAQR 126
            +  ++QN  +++ G TG GKTTQ+PQ+ ++        A+  +  TQPRR++A+SVA+R
Sbjct: 69  ILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAER 128

Query: 127 VSEEMDCQLGQEVGYSIRFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH 185
           V+ E   + G+  GYS+RFE     P   + + T G+LLR+   +  +     +++DE H
Sbjct: 129 VAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIH 186

Query: 186 ERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNV 234
           ER + TD L+ VL++V++   ++++V+MSAT+D   F +YF N P++ V
Sbjct: 187 ERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEV 235

>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451

 Score =  174 bits (443), Expect = 1e-51
 Identities = 31/193 (16%), Positives = 65/193 (33%), Gaps = 23/193 (11%)

Query: 58  RITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR 117
            +  P +E   +   +  + +  ++    G+GKT +I    V  +     +      P R
Sbjct: 3   AMGEPDYEVDED---IFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLR-TLILAPTR 58

Query: 118 VAAMSVAQRVSEEMDCQLGQEVGY-SIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENY 176
           V A  + + +        G  + Y +   +   + + ++  M         +S   + NY
Sbjct: 59  VVAAEMEEALR-------GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNY 111

Query: 177 QVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG 236
            +I++DEAH     +    G +     +  +   + M+AT                  P 
Sbjct: 112 NLIVMDEAHFTDPCSVAARGYIST-RVEMGEAAAIFMTATPPGSTDP----------FPQ 160

Query: 237 RTHPVEIFYTPEP 249
              P+E      P
Sbjct: 161 SNSPIEDIEREIP 173

>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459

 Score =  163 bits (415), Expect = 2e-47
 Identities = 37/186 (19%), Positives = 60/186 (32%), Gaps = 20/186 (10%)

Query: 65  EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA 124
           +       +L + Q  VL    GSGKT +I    ++ +     +  A   P RV    VA
Sbjct: 9   QMGRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLR-TAVLAPTRV----VA 63

Query: 125 QRVSEEMDCQLGQEVGYSIRF-EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183
             ++E +    G  V Y     +       ++  M    L    MS   + NY + ++DE
Sbjct: 64  AEMAEALR---GLPVRYQTSAVQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDE 120

Query: 184 AHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEI 243
           AH       I          +  +   + M+AT                  P    P+  
Sbjct: 121 AHFTD-PASIAARGYIATKVELGEAAAIFMTATPPGTTD----------PFPDSNAPIHD 169

Query: 244 FYTPEP 249
                P
Sbjct: 170 LQDEIP 175

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431

 Score =  160 bits (407), Expect = 2e-46
 Identities = 27/172 (15%), Positives = 62/172 (36%), Gaps = 9/172 (5%)

Query: 76  QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQL 135
           + +  VL    G+GKT ++    V  +     +      P RV A  + + +  E     
Sbjct: 1   KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLR-TVILAPTRVVASEMYEALRGE----- 54

Query: 136 GQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195
                 +   +   +   ++ +M       + +    + NY + ++DEAH    A+    
Sbjct: 55  -PIRYMTPAVQSERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAAR 113

Query: 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTP 247
           G ++  +    D   + M+AT   G  + +  +   +       P + + + 
Sbjct: 114 GYIETRVSMG-DAGAIFMTATPP-GTTEAFPPSNSPIIDEETRIPDKAWNSG 163

>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666

 Score =  157 bits (397), Expect = 1e-43
 Identities = 37/201 (18%), Positives = 65/201 (32%), Gaps = 16/201 (7%)

Query: 43  TGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS 102
                     E     +  PVF   +    +    Q   L   TGSGK+T++P       
Sbjct: 198 VAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQG 257

Query: 103 KSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGM 162
             V         P   A +     +S+     +   +   +R     +P   + Y T G 
Sbjct: 258 YKVL-----VLNPSVAATLGFGAYMSKAH--GIDPNIRTGVRTITTGAP---VTYSTYGK 307

Query: 163 LLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKF 222
            L +G        Y +I+ DE H     T + +G + +  +      +V+ +AT      
Sbjct: 308 FLADGG--CSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT 365

Query: 223 QQYFDNAPLMNVPGRTHPVEI 243
                  P +     ++  EI
Sbjct: 366 VP----HPNIEEVALSNTGEI 382

>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618

 Score =  152 bits (385), Expect = 4e-42
 Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 20/191 (10%)

Query: 60  TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA 119
                        +  + +  ++    G+GKT +I    V  +     +      P RV 
Sbjct: 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLR-TLILAPTRVV 227

Query: 120 AMSVAQRVSEEMDCQLGQEVGY-SIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQV 178
           A  + + +        G  + Y +   +   + + ++  M         +S   + NY +
Sbjct: 228 AAEMEEALR-------GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNL 280

Query: 179 ILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238
           I++DEAH     +    G +   ++   +   + M+AT                  P   
Sbjct: 281 IVMDEAHFTDPCSVAARGYISTRVEMG-EAAAIFMTATPPGSTDP----------FPQSN 329

Query: 239 HPVEIFYTPEP 249
            P+E      P
Sbjct: 330 SPIEDIEREIP 340

>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440

 Score =  148 bits (374), Expect = 1e-41
 Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 27/182 (14%)

Query: 72  TLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEM 131
            +L +    VL    G+GKT +     +        +      P RV    + +      
Sbjct: 3   HMLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLR-TLVLAPTRVVLSEMKEAFH--- 58

Query: 132 DCQLGQEVGYSIR-FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA 190
               G +V +  + F    S + V+  M    L    +    + N++VI++DEAH    A
Sbjct: 59  ----GLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPA 114

Query: 191 TDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPP 250
           +    G      +   +   ++M+AT                  PG +            
Sbjct: 115 SIAARGWAAHRARAN-ESATILMTATP-----------------PGTSDEFPHSNGEIED 156

Query: 251 LG 252
           + 
Sbjct: 157 VQ 158

>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673

 Score =  145 bits (367), Expect = 2e-39
 Identities = 36/195 (18%), Positives = 62/195 (31%), Gaps = 22/195 (11%)

Query: 62  PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM 121
                      +L + Q  VL    G+GKT +I    ++ +     +  A   P RV A 
Sbjct: 226 EEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLR-TAVLAPTRVVAA 284

Query: 122 SVAQRVSEEMDCQLGQEVGYSI--RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVI 179
            +A+         L       +    +   S   ++  M    L    MS   + NY + 
Sbjct: 285 EMAE--------ALRGLPVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLF 336

Query: 180 LLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTH 239
           ++DEAH    A+    G +   ++   +   + M+AT                  P    
Sbjct: 337 VMDEAHFTDPASIAARGYIATRVEAG-EAAAIFMTATPPGTSD----------PFPDTNS 385

Query: 240 PVEIFYTPEPPLGAG 254
           PV    +  P     
Sbjct: 386 PVHDVSSEIPDRAWS 400

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270

 Score = 71.9 bits (177), Expect = 8e-15
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 258 PQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQ 297
              F RP + +  AD  K +F   +GDHLTLL VY+++K 
Sbjct: 81  QNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKN 120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 2e-09
 Identities = 59/346 (17%), Positives = 101/346 (29%), Gaps = 94/346 (27%)

Query: 1   MSKRRLDVIDPYITKKNREERL------------ATVNASVSTS-------IASNLQVNP 41
           +SK  +D I   I  K+                   V   V          + S ++   
Sbjct: 46  LSKEEIDHI---IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102

Query: 42  FTGYPYTPRYHELHRKRI--TLPVFE----YRTE-FMTL------LAQNQCIVLVGETGS 88
                 T  Y E  R R+     VF      R + ++ L      L   + +++ G  GS
Sbjct: 103 RQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 89  GKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDC 148
           GKT      C+ Y        V C    ++  +++    S E   ++ Q++ Y I     
Sbjct: 162 GKTWVALDVCLSYK-------VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 149 SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVL-KEVIKQRA- 206
           S              ++  +          +L  + +E  L   +L+ V   +     A 
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRR--------LLKSKPYENCL--LVLLNVQNAKAWN--AF 262

Query: 207 DLK---LVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIF----YTPEPPLGA-GPWL- 257
           +L    L+    T               ++    TH          TP+        +L 
Sbjct: 263 NLSCKILLT---TRFKQ-------VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 258 --PQCFTRPNEAKK---------AA--DDAKMR---FAHIDGDHLT 287
             PQ    P E            A    D       + H++ D LT
Sbjct: 313 CRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 12/63 (19%)

Query: 39  VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
           VNP+   P YTP     +R  KR   P  +F      Y+  +M    +NQ I++ GE+G+
Sbjct: 125 VNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQ--YMLTDRENQSILITGESGA 182

Query: 89  GKT 91
           GKT
Sbjct: 183 GKT 185

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 12/63 (19%)

Query: 39  VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
           VNPF   P YT    ++ +  +R  +   +F      YR   M    QNQ +++ GE+G+
Sbjct: 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYR--SMLDDRQNQSLLITGESGA 183

Query: 89  GKT 91
           GKT
Sbjct: 184 GKT 186

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 12/63 (19%)

Query: 39  VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
           VNPF   P YT    ++ +  +R  +   +F      YR   M    QNQ +++ GE+G+
Sbjct: 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYR--SMLDDRQNQSLLITGESGA 183

Query: 89  GKT 91
           GKT
Sbjct: 184 GKT 186

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 12/63 (19%)

Query: 39  VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
           +NP+   P Y       +       +   +F      Y+   M    +NQ I++ GE+G+
Sbjct: 110 INPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYK--QMARDERNQSIIVSGESGA 167

Query: 89  GKT 91
           GKT
Sbjct: 168 GKT 170

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 13/64 (20%)

Query: 39  VNPFTGYP--YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETG 87
           VNP+   P  Y+    + ++     T+P  VF      +R   M +L  +Q I++ GE+G
Sbjct: 93  VNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFR--DMKVLKLSQSIIVSGESG 150

Query: 88  SGKT 91
           +GKT
Sbjct: 151 AGKT 154

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 12/63 (19%)

Query: 39  VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
           +NP+   P YT    E++R  KR  +P  V+      YR   M    ++Q I+  GE+G+
Sbjct: 100 INPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYR--SMLQDREDQSILCTGESGA 157

Query: 89  GKT 91
           GKT
Sbjct: 158 GKT 160

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 12/63 (19%)

Query: 39  VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
            NPF     Y     + +    +  +P  ++      YR+  M    +NQC+++ GE+G+
Sbjct: 48  TNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRS--MRQSQENQCVIISGESGA 105

Query: 89  GKT 91
           GKT
Sbjct: 106 GKT 108

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 12/66 (18%)

Query: 36  NLQVNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGE 85
            + VNP+   P YT      +R  ++  +P  +F      Y+   M    +NQ  ++ GE
Sbjct: 120 CIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQ--NMVTDRENQSCLITGE 177

Query: 86  TGSGKT 91
           +G+GKT
Sbjct: 178 SGAGKT 183

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.98
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.97
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.97
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.97
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.97
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.97
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.97
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.97
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.97
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.97
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.97
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.97
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.97
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.97
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.96
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.96
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.96
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.96
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.95
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.95
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.95
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.95
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.95
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.95
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.95
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.94
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.94
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.94
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.94
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.94
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.94
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.94
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.94
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.93
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.92
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.92
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.92
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	99.91
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.91
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.91
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.9
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.89
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.89
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.88
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.88
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.86
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.86
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.85
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.84
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.84
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.82
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.82
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.81
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.8
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	99.8
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.78
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.77
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.73
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.71
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.71
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.71
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.71
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.7
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.7
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.7
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.69
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.69
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.68
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.68
2og2_A	359	Putative signal recognition particle receptor; nuc	99.66
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.65
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.63
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.62
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.62
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.62
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.61
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.6
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.59
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.57
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.56
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.54
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.53
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.48
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.47
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.47
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.47
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.47
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.46
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.45
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.4
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.37
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.36
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.36
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.36
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.34
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.32
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.32
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.31
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.28
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.27
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.26
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.26
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.23
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.21
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.19
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.19
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.19
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.19
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.18
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.14
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.13
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.11
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.08
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.06
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.05
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.04
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.03
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.02
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.02
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.01
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.01
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.99
2va8_A	715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	98.99
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.99
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.98
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.97
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.97
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.92
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.91
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.87
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.81
2p6r_A	702	Afuhel308 helicase; protein-DNA complex, SF2 helic	98.81
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.8
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.79
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.73
2zj8_A	720	DNA helicase, putative SKI2-type helicase; RECA fo	98.72
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.72
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.69
3o8b_A	666	HCV NS3 protease/helicase; ntpase, RNA, translocat	98.69
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.65
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.64
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.62
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.61
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.6
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.57
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.56
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.55
2whx_A	618	Serine protease/ntpase/helicase NS3; transcription	98.53
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.53
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.53
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.48
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.47
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.46
2jlq_A	451	Serine protease subunit NS3; ribonucleoprotein, nu	98.42
2z83_A	459	Helicase/nucleoside triphosphatase; hydrolase, mem	98.41
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.41
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.37
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.36
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.36
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.35
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.34
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.33
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.32
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.3
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.29
2v6i_A	431	RNA helicase; membrane, hydrolase, transmembrane,	98.29
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.25
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.24
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.22
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.22
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.21
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.15
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.13
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.11
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.11
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.1
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.1
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	98.09
3l9o_A	1108	ATP-dependent RNA helicase DOB1; REC-A fold, winge	98.09
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.09
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	98.07
1yks_A	440	Genome polyprotein [contains: flavivirin protease	98.07
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.06
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.04
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.04
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.03
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.03
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.01
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.01
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.01
2wv9_A	673	Flavivirin protease NS2B regulatory subunit, FLAV	98.0
4a4z_A	997	Antiviral helicase SKI2; hydrolase, ATPase, mRNA d	98.0
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.99
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.99
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.97
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.97
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	97.96
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.94
3ber_A	249	Probable ATP-dependent RNA helicase DDX47; DEAD, A	97.94
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.94
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.92
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.92
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.92
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.9
3bos_A	242	Putative DNA replication factor; P-loop containing	97.9
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	97.9
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	97.89
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	97.89
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.89
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.88
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.87
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	97.86
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.86
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	97.83
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.79
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.74
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.73
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.73
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.73
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.72
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	97.72
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.71
2oxc_A	230	Probable ATP-dependent RNA helicase DDX20; DEAD, s	97.69
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.68
2pl3_A	236	Probable ATP-dependent RNA helicase DDX10; DEAD, s	97.68
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.68
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.67
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.66
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.66
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.63
1xti_A	391	Probable ATP-dependent RNA helicase P47; alpha-bet	97.62
1hv8_A	367	Putative ATP-dependent RNA helicase MJ0669; RNA-bi	97.61
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.6
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.59
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.59
3fho_A	508	ATP-dependent RNA helicase DBP5; mRNA export, ATPa	97.59
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.59
2qgz_A	308	Helicase loader, putative primosome component; str	97.57
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	97.57
3co5_A	143	Putative two-component system transcriptional RES	97.56
3b6e_A	216	Interferon-induced helicase C domain-containing P;	97.56
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.55
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	97.54
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.51
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.5
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.48
2xgj_A	1010	ATP-dependent RNA helicase DOB1; hydrolase-RNA com	97.45
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.44
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.42
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.42
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.42
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.4
3ly5_A	262	ATP-dependent RNA helicase DDX18; alpha-beta, stru	97.38
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.36
2ykg_A	696	Probable ATP-dependent RNA helicase DDX58; hydrola	97.36
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.35
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.34
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.3
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	97.3
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.28
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.27
3pvs_A	447	Replication-associated recombination protein A; ma	97.25
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	97.23
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.23
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.22
3rc3_A	677	ATP-dependent RNA helicase SUPV3L1, mitochondrial;	97.21
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.21
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.2
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.18
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.16
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	97.16
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.13
2db3_A	434	ATP-dependent RNA helicase VASA; DEAD-BOX, protein	97.11
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.1
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.09
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.09
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.08
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.08
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.08
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.07
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.07
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.05
2i4i_A	417	ATP-dependent RNA helicase DDX3X; DEAD, structural	97.05
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.05
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.02
3i5x_A	563	ATP-dependent RNA helicase MSS116; protein-RNA com	97.02
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.01
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.0
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.0
1wp9_A	494	ATP-dependent RNA helicase, putative; ATPase, DNA	96.99
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.99
3bor_A	237	Human initiation factor 4A-II; translation initiat	96.96
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.94
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.93
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.93
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.92
3tbk_A	555	RIG-I helicase domain; DECH helicase, ATP binding,	96.91
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.89
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.89
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.89
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	96.89
3sqw_A	579	ATP-dependent RNA helicase MSS116, mitochondrial;	96.89
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.89
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.88
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.88
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.87
3oiy_A	414	Reverse gyrase helicase domain; topoisomerase, DNA	96.87
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.86
4a2p_A	556	RIG-I, retinoic acid inducible protein I; hydrolas	96.86
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.85
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.85
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.84
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.84
3ice_A	422	Transcription termination factor RHO; transcriptio	96.83
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.83
1rif_A	282	DAR protein, DNA helicase UVSW; bacteriophage, REC	96.83
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.82
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.81
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.81
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	96.8
3io5_A	333	Recombination and repair protein; storage dimer, i	96.8
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.79
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.79
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.78
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	96.77
1fuu_A	394	Yeast initiation factor 4A; IF4A, helicase, DEAD-b	96.77
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.77
2j0s_A	410	ATP-dependent RNA helicase DDX48; mRNA processing,	96.76
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.76
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.76
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.76
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.75
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.74
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.73
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.73
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.73
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.69
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.69
4f92_B	1724	U5 small nuclear ribonucleoprotein 200 kDa helica;	96.68
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.67
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.66
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.63
1wrb_A	253	DJVLGB; RNA helicase, DEAD BOX, VASA, structural g	96.63
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	96.62
4f92_B	1724	U5 small nuclear ribonucleoprotein 200 kDa helica;	96.61
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.6
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.6
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.59
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.59
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.58
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.57
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.57
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.57
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.56
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.55
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.52
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.51
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.51
2oca_A	510	DAR protein, ATP-dependent DNA helicase UVSW; ATP-	96.5
4gl2_A	699	Interferon-induced helicase C domain-containing P;	96.5
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	96.5
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	96.49
4a2q_A	797	RIG-I, retinoic acid inducible protein I; hydrolas	96.49
1via_A	175	Shikimate kinase; structural genomics, transferase	96.48
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.48
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.46
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.45
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.44
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.44
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.41
4a2w_A	936	RIG-I, retinoic acid inducible protein I; hydrolas	96.41
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.41
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.4
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.38
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.38
4ddu_A	1104	Reverse gyrase; topoisomerase, DNA supercoiling, a	96.38
1oyw_A	523	RECQ helicase, ATP-dependent DNA helicase; winged	96.38
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.37
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.37
1gku_B	1054	Reverse gyrase, TOP-RG; topoisomerase, DNA superco	96.36
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.36
2v1x_A	591	ATP-dependent DNA helicase Q1; DNA strand annealin	96.33
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.31
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.3
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.3
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.29
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.29
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.28
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	96.28
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.28
2xxa_A	433	Signal recognition particle protein; protein trans	96.26
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.25
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.25
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.24
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.23
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.23
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.23
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.23
2fwr_A	472	DNA repair protein RAD25; DNA unwinding, XPB, DNA	96.23
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.22
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.21
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.21
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.21
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.21
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.2
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.2
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.19
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.19
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.18
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.18
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.17
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.16
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.16
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.15
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.15
2z0m_A	337	337AA long hypothetical ATP-dependent RNA helicase	96.14
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.13
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.13
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.13
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.12
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.12
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.11
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.11
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.1
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.1
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.1
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.1
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.07
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.06
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.05
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.04
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.03
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.02
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.02
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.02
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.02
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.01
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.0
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.99
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.98
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.98
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.98
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.97
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.97
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	95.97
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.97
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.96
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.95
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.95
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.93
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.92
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.92
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.91
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.9
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.9
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.9
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.89
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.89
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.88
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.88
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.88
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	95.87
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	95.86
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.86
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.85
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.85
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.84
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.84
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.83
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.83
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.82
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.82
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.81
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.81
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.8
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.8
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.8
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.79
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.78
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.78
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.78

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=1.4e-37  Score=284.12  Aligned_cols=180  Identities=17%  Similarity=0.176  Sum_probs=138.6

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc----hh-----hhHHHHHHHhhhhhccc
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP----RR-----VAAMSVAQRVSEEMDCQ  134 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~----~~-----~~~~~~~~~~~~~~~~~  134 (302)
                      ..+++++++.|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.    ..     .....+.|.....+..+
T Consensus        17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~lt   96 (359)
T 3fvq_A           17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLT   96 (359)
T ss_dssp             EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSC
T ss_pred             EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCC
Confidence            3457889999999999999999999999999999999999999999988654    11     11111223333344567


Q ss_pred             cccceeeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         135 LGQEVGYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       135 ~~~~v~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+++.|.......                   ...++.+..||||||||++|||||+.+|++|||||   |++++|+..
T Consensus        97 V~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDE---Pts~LD~~~  173 (359)
T 3fvq_A           97 VYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDE---PFSALDEQL  173 (359)
T ss_dssp             HHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES---TTTTSCHHH
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHH
Confidence            88888775432111                   12345677899999999999999999999999999   999999887


Q ss_pred             -HHHHHHH-HHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         196 -GVLKEVI-KQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       196 -~~l~~ll-~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                       ..+.+.+ +..++.|+|+|++|||++++..+||++++|+ .|+.    .|.+++..|
T Consensus       174 r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~-~G~i~~~g~~~el~~~p  230 (359)
T 3fvq_A          174 RRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMK-QGRILQTASPHELYRQP  230 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEE-CCEEEEEeCHHHHHhCc
Confidence             5565544 4445568999999999999999999999998 5553    555555444

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=2.5e-37  Score=282.69  Aligned_cols=179  Identities=17%  Similarity=0.205  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHH---H---HHHhhh----hhccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMS---V---AQRVSE----EMDCQ  134 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~---~---~~~~~~----~~~~~  134 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|++|+|.++|.+........   .   ..++++    ....+
T Consensus        42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~T  121 (366)
T 3tui_C           42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT  121 (366)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSC
T ss_pred             EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCC
Confidence            3578999999999999999999999999999999999999999999997653221111   0   111222    23456


Q ss_pred             cccceeeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         135 LGQEVGYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       135 ~~~~v~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+++.+.......                   ...++.+..||||||||++|||||+.+|++|||||   ||+++|+..
T Consensus       122 V~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDE---PTs~LD~~~  198 (366)
T 3tui_C          122 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQ---ATSALDPAT  198 (366)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEES---TTTTSCHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC---CCccCCHHH
Confidence            67776654322111                   12345667899999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         196 -GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       196 -~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                       ..+.+++++.. +.|+||+++|||++.+.++||++++|+ .|+.    .+.+++..|
T Consensus       199 ~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~-~G~iv~~g~~~ev~~~p  255 (366)
T 3tui_C          199 TRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVIS-NGELIEQDTVSEVFSHP  255 (366)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEE-TTEEEECCBHHHHHSSC
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCC
Confidence             77888887654 458999999999999999999999998 5543    444555433

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=1.6e-37  Score=285.58  Aligned_cols=182  Identities=16%  Similarity=0.203  Sum_probs=141.4

Q ss_pred             ChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhccccc
Q psy2071          62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLG  136 (302)
Q Consensus        62 p~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~  136 (302)
                      +...+++++++.|++||+++|+||||||||||+++|+|+++|++|+|.+.|.+.....     ...+.|.....+..++.
T Consensus        14 g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~   93 (381)
T 3rlf_A           14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVA   93 (381)
T ss_dssp             TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHH
T ss_pred             CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHH
Confidence            3344678899999999999999999999999999999999999999999987542211     11222333334456778


Q ss_pred             cceeeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H
Q psy2071         137 QEVGYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G  196 (302)
Q Consensus       137 ~~v~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~  196 (302)
                      +++.|..+....                   ...++.+..||||||||++|||||+.+|++|||||   |+++||+.. .
T Consensus        94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE---Pts~LD~~~~~  170 (381)
T 3rlf_A           94 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE---PLSNLDAALRV  170 (381)
T ss_dssp             HHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEES---TTTTSCHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEEC---CCcCCCHHHHH
Confidence            887765432211                   12345677899999999999999999999999999   999999887 6


Q ss_pred             HHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         197 VLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       197 ~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                      .+.+++++.. +.|+|+|++|||++++..+||++++|+ .|+.    .|.+++..|
T Consensus       171 ~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~-~G~i~~~g~~~~l~~~p  225 (381)
T 3rlf_A          171 QMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD-AGRVAQVGKPLELYHYP  225 (381)
T ss_dssp             HHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHCC
T ss_pred             HHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEE-CCEEEEEeCHHHHHhCC
Confidence            6777777653 448999999999999999999999998 5653    555555444

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=2.3e-36  Score=267.96  Aligned_cols=169  Identities=18%  Similarity=0.213  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch--hhhHHHHHH---Hhhh-----hhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR--RVAAMSVAQ---RVSE-----EMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~--~~~~~~~~~---~~~~-----~~~~~~  135 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|+|.++|.+..  .........   .+.+     .+..++
T Consensus        23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv  102 (275)
T 3gfo_A           23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASV  102 (275)
T ss_dssp             EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBH
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcH
Confidence            578899999999999999999999999999999999999999999997652  111111111   1222     123456


Q ss_pred             ccceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         136 GQEVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       136 ~~~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+++.+......                   ....++.+..|||||+||++||+||+.+|++|||||   ||+++|+.. 
T Consensus       103 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDE---Pts~LD~~~~  179 (275)
T 3gfo_A          103 YQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDE---PTAGLDPMGV  179 (275)
T ss_dssp             HHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEEC---TTTTCCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC---ccccCCHHHH
Confidence            666554321111                   112345677899999999999999999999999999   999999887 


Q ss_pred             HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 ~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ..+.+++.... +.|.|||++|||++++..+||++++|+ .|+.
T Consensus       180 ~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~-~G~i  222 (275)
T 3gfo_A          180 SEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMK-EGRV  222 (275)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEE-TTEE
T ss_pred             HHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence            77888887654 448999999999999999999999998 6654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=6.7e-36  Score=264.11  Aligned_cols=170  Identities=15%  Similarity=0.178  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh----hhcccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE----EMDCQLGQ  137 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~----~~~~~~~~  137 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+............   +.+    .+..++.+
T Consensus        25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e  104 (266)
T 4g1u_C           25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSE  104 (266)
T ss_dssp             EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHH
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHH
Confidence            45788999999999999999999999999999999999999999999976543222111111   111    12345555


Q ss_pred             ceeeeeee-----------------cCCCCccccccccCHHHHHHHhccccCCC------CCcEEEEcCCCCCCcchHHH
Q psy2071         138 EVGYSIRF-----------------EDCSSPKTVLKYMTDGMLLREGMSDPMLE------NYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       138 ~v~~~~~~-----------------~~~~~~~~~~~~lS~G~~qr~~la~al~~------~p~lliLDE~~~p~~~lD~~  194 (302)
                      ++.+....                 ......++.+..|||||+||++|||||+.      +|++|||||   ||+++|+.
T Consensus       105 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDE---Pts~LD~~  181 (266)
T 4g1u_C          105 VIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDE---PTSALDLY  181 (266)
T ss_dssp             HHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECC---CCSSCCHH
T ss_pred             HHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeC---ccccCCHH
Confidence            55443211                 11112345677899999999999999999      999999999   99999988


Q ss_pred             H-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         195 M-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       195 ~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      . ..+.++++... +.+.||+++|||++++..+||++++|+ .|+.
T Consensus       182 ~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~-~G~i  226 (266)
T 4g1u_C          182 HQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLA-QGKL  226 (266)
T ss_dssp             HHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEE-TTEE
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEE-CCEE
Confidence            7 77888887654 346899999999999999999999998 6654

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=2.4e-36  Score=262.54  Aligned_cols=168  Identities=14%  Similarity=0.141  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHH-------HHHHhhh----hhccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMS-------VAQRVSE----EMDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~-------~~~~~~~----~~~~~  134 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+........       ....+.+    ....+
T Consensus        20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~t   99 (235)
T 3tif_A           20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLT   99 (235)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSC
T ss_pred             eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCc
Confidence            467889999999999999999999999999999999999999999987643221111       0111222    22346


Q ss_pred             cccceeeeeee---------------------cCCCC--ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071         135 LGQEVGYSIRF---------------------EDCSS--PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT  191 (302)
Q Consensus       135 ~~~~v~~~~~~---------------------~~~~~--~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l  191 (302)
                      +.+++.+....                     .....  .++.+..|||||+||++|||||+.+|++|||||   ||+++
T Consensus       100 v~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDE---Pts~L  176 (235)
T 3tif_A          100 ALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ---PTWAL  176 (235)
T ss_dssp             HHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES---TTTTS
T ss_pred             HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccC
Confidence            66665442110                     01111  245678899999999999999999999999999   99999


Q ss_pred             HHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         192 DILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       192 D~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |+.. ..+.+++....+ .|.|||++|||++. ..+||++++|+ .|+.
T Consensus       177 D~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~~d~i~~l~-~G~i  223 (235)
T 3tif_A          177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFGERIIYLK-DGEV  223 (235)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTTSSEEEEEE-TTEE
T ss_pred             CHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHhCCEEEEEE-CCEE
Confidence            9887 778888876644 38999999999995 58999999998 7764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=3.1e-36  Score=275.29  Aligned_cols=178  Identities=17%  Similarity=0.191  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----hHHHHHHHhhhhhccccccce
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----AAMSVAQRVSEEMDCQLGQEV  139 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v  139 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+....     ....+.+........++.+++
T Consensus        29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni  108 (355)
T 1z47_A           29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNV  108 (355)
T ss_dssp             TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHH
T ss_pred             EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHH
Confidence            357889999999999999999999999999999999999999999988654211     111122222233455777777


Q ss_pred             eeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         140 GYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       140 ~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                      .|..+...                   ....++.+..|||||+||++|||||+.+|++|||||   |++++|+.. ..+.
T Consensus       109 ~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE---P~s~LD~~~r~~l~  185 (355)
T 1z47_A          109 SFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDE---PFAAIDTQIRRELR  185 (355)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES---TTCCSSHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHHHH
Confidence            66432211                   012345677899999999999999999999999999   999999887 6777


Q ss_pred             HHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----Cccceeec
Q psy2071         200 EVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYT  246 (302)
Q Consensus       200 ~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~  246 (302)
                      +++++.. +.|.|+|++|||++++..+||++++|+ .|+.    .|.+++..
T Consensus       186 ~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~-~G~i~~~g~~~~l~~~  236 (355)
T 1z47_A          186 TFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLH-EGNVEQFGTPEEVYEK  236 (355)
T ss_dssp             HHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHS
T ss_pred             HHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhC
Confidence            7777653 348899999999999999999999998 6653    45454433

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=1.3e-35  Score=261.58  Aligned_cols=170  Identities=17%  Similarity=0.181  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch----hh-hHHHHHHHhhh----hhcccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR----RV-AAMSVAQRVSE----EMDCQL  135 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~----~~-~~~~~~~~~~~----~~~~~~  135 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+..    .. ........+.+    ....++
T Consensus        38 ~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv  117 (263)
T 2olj_A           38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTV  117 (263)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCH
T ss_pred             EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCH
Confidence            3578899999999999999999999999999999999999999999986542    00 00111111222    123355


Q ss_pred             ccceeeee-ee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         136 GQEVGYSI-RF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       136 ~~~v~~~~-~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+++.+.. ..                   ......++.+..|||||+||++||+||+.+|++|||||   ||+++|+..
T Consensus       118 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDE---Pts~LD~~~  194 (263)
T 2olj_A          118 LNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDE---PTSALDPEM  194 (263)
T ss_dssp             HHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES---TTTTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeC---CcccCCHHH
Confidence            55554421 10                   00012345667899999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.++++...+.|.|||++|||++.+..+||++++|+ .|+.
T Consensus       195 ~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~-~G~i  237 (263)
T 2olj_A          195 VGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMD-GGYI  237 (263)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE-TTEE
T ss_pred             HHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEE-CCEE
Confidence             77888887765448999999999999999999999998 6653

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=1.3e-35  Score=256.04  Aligned_cols=168  Identities=11%  Similarity=0.035  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-------HHHHHhhh----hhccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-------SVAQRVSE----EMDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-------~~~~~~~~----~~~~~  134 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+.......       .....+.+    ....+
T Consensus        19 ~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t   98 (224)
T 2pcj_A           19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELT   98 (224)
T ss_dssp             EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSC
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCC
Confidence            46788999999999999999999999999999999999999999988654321110       00111122    12335


Q ss_pred             cccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         135 LGQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       135 ~~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+++.+....                   ......++.+..|||||+||++||+||+.+|++|||||   ||+++|+..
T Consensus        99 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE---Pt~~LD~~~  175 (224)
T 2pcj_A           99 ALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADE---PTGNLDSAN  175 (224)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEES---TTTTCCHHH
T ss_pred             HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CCCCCCHHH
Confidence            55555432211                   11112345677899999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+++....+.|.||+++|||++.+ .+||++++|+ .|+.
T Consensus       176 ~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~-~G~i  217 (224)
T 2pcj_A          176 TKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMK-DGKV  217 (224)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEE-TTEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEE-CCEE
Confidence             778888876654488999999999987 8999999998 6653

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=1.2e-35  Score=262.00  Aligned_cols=169  Identities=17%  Similarity=0.125  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh----------h------hHHHHHHHhhh
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR----------V------AAMSVAQRVSE  129 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~----------~------~~~~~~~~~~~  129 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+...          .      ........+.+
T Consensus        21 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q  100 (262)
T 1b0u_A           21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQ  100 (262)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECS
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEec
Confidence            4678899999999999999999999999999999999999999998865420          0      00111111222


Q ss_pred             ----hhccccccceeeee-ee------------------cCC-CC-ccccccccCHHHHHHHhccccCCCCCcEEEEcCC
Q psy2071         130 ----EMDCQLGQEVGYSI-RF------------------EDC-SS-PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEA  184 (302)
Q Consensus       130 ----~~~~~~~~~v~~~~-~~------------------~~~-~~-~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~  184 (302)
                          ....++.+++.+.. ..                  ... .. .++.+..|||||+||++||+||+.+|++||||| 
T Consensus       101 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE-  179 (262)
T 1b0u_A          101 HFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE-  179 (262)
T ss_dssp             SCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEES-
T ss_pred             CcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC-
Confidence                12335555554421 00                  001 12 355677899999999999999999999999999 


Q ss_pred             CCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         185 HERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       185 ~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                        ||+++|+.. ..+.+++....+.|.|||++|||++.+..+||++++|+ .|+.
T Consensus       180 --Pts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~-~G~i  231 (262)
T 1b0u_A          180 --PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH-QGKI  231 (262)
T ss_dssp             --TTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEE-TTEE
T ss_pred             --CCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence              999999887 77888887665448899999999999999999999998 6653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=4.4e-36  Score=275.13  Aligned_cols=178  Identities=17%  Similarity=0.236  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhcccccccee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEVG  140 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~  140 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+.....     ...+.+........++.+++.
T Consensus        18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~   97 (362)
T 2it1_A           18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIA   97 (362)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHH
T ss_pred             EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHH
Confidence            567889999999999999999999999999999999999999999886542211     111122222234456777776


Q ss_pred             eeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH
Q psy2071         141 YSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE  200 (302)
Q Consensus       141 ~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~  200 (302)
                      |..+...                   ....++.+..|||||+||++|||||+.+|++|||||   |++++|+.. ..+.+
T Consensus        98 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE---P~s~LD~~~r~~l~~  174 (362)
T 2it1_A           98 FPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDE---PLSNLDALLRLEVRA  174 (362)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES---GGGGSCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC---ccccCCHHHHHHHHH
Confidence            6432111                   112355677899999999999999999999999999   999999887 67777


Q ss_pred             HHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         201 VIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       201 ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                      ++++.. +.|.|+|++|||++++..+||++++|+ .|+.    .|.+++..|
T Consensus       175 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~-~G~i~~~g~~~~~~~~p  225 (362)
T 2it1_A          175 ELKRLQKELGITTVYVTHDQAEALAMADRIAVIR-EGEILQVGTPDEVYYKP  225 (362)
T ss_dssp             HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHSC
T ss_pred             HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCc
Confidence            777653 348899999999999999999999998 6653    455554433

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=1.5e-35  Score=271.37  Aligned_cols=178  Identities=16%  Similarity=0.220  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhcccccccee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEVG  140 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~  140 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+.....     ...+.+........++.+++.
T Consensus        18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~   97 (359)
T 2yyz_A           18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIA   97 (359)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHH
T ss_pred             EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHH
Confidence            567889999999999999999999999999999999999999999886542211     111122222234557777777


Q ss_pred             eeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH
Q psy2071         141 YSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE  200 (302)
Q Consensus       141 ~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~  200 (302)
                      |..+....                   ...++.+..|||||+||++|||||+.+|++|||||   |++++|+.. ..+.+
T Consensus        98 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDE---P~s~LD~~~r~~l~~  174 (359)
T 2yyz_A           98 FPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDE---PLSNLDANLRMIMRA  174 (359)
T ss_dssp             GGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES---TTTTSCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC---CcccCCHHHHHHHHH
Confidence            65432110                   12345667899999999999999999999999999   999999887 67777


Q ss_pred             HHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         201 VIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       201 ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                      ++++.. +.|.|+|++|||++++..+||++++|+ .|+.    .|.+++..|
T Consensus       175 ~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~-~G~i~~~g~~~~l~~~p  225 (359)
T 2yyz_A          175 EIKHLQQELGITSVYVTHDQAEAMTMASRIAVFN-QGKLVQYGTPDEVYDSP  225 (359)
T ss_dssp             HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHSC
T ss_pred             HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE-CCEEEEeCCHHHHHhCc
Confidence            776653 348899999999999999999999998 6653    455554433

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=3.5e-36  Score=275.45  Aligned_cols=177  Identities=14%  Similarity=0.147  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh-----h-----hHHHHHHHhhhhhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR-----V-----AAMSVAQRVSEEMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~-----~-----~~~~~~~~~~~~~~~~~  135 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+...     .     ....+.+........++
T Consensus        20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv   99 (353)
T 1oxx_K           20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA   99 (353)
T ss_dssp             EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred             eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence            5678899999999999999999999999999999999999999998855321     1     11111222222345577


Q ss_pred             ccceeeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         136 GQEVGYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       136 ~~~v~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                      .+++.|..+....                   ...++.+..|||||+||++|||||+.+|++|||||   |++++|+.. 
T Consensus       100 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDE---P~s~LD~~~r  176 (353)
T 1oxx_K          100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDE---PFSNLDARMR  176 (353)
T ss_dssp             HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES---TTTTSCGGGH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC---CcccCCHHHH
Confidence            7777665422110                   12345667899999999999999999999999999   999999777 


Q ss_pred             HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----Cccceeec
Q psy2071         196 GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYT  246 (302)
Q Consensus       196 ~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~  246 (302)
                      ..+.+++++.. +.|.|+|++|||++++..+||++++|+ .|+.    .|.+++..
T Consensus       177 ~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~-~G~i~~~g~~~~l~~~  231 (353)
T 1oxx_K          177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLV-KGKLVQVGKPEDLYDN  231 (353)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHS
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhC
Confidence            66777776553 348899999999999999999999998 6653    45555443

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=3.1e-35  Score=258.35  Aligned_cols=168  Identities=18%  Similarity=0.203  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHH---HHhhh----hhccccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA---QRVSE----EMDCQLGQE  138 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~  138 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+..... ....   .++.+    ....++.++
T Consensus        30 vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~-~~~~~~i~~v~q~~~l~~~ltv~en  108 (256)
T 1vpl_A           30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP-HEVRKLISYLPEEAGAYRNMQGIEY  108 (256)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCH-HHHHTTEEEECTTCCCCTTSBHHHH
T ss_pred             EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccH-HHHhhcEEEEcCCCCCCCCCcHHHH
Confidence            577889999999999999999999999999999999999999999886543210 0011   11111    123355555


Q ss_pred             eeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH
Q psy2071         139 VGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL  198 (302)
Q Consensus       139 v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l  198 (302)
                      +.+....                   ......++.+..|||||+||++||+||+.+|++|||||   ||+++|+.. ..+
T Consensus       109 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE---Pts~LD~~~~~~l  185 (256)
T 1vpl_A          109 LRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE---PTSGLDVLNAREV  185 (256)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES---TTTTCCHHHHHHH
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CccccCHHHHHHH
Confidence            5432111                   00112345677899999999999999999999999999   999999887 778


Q ss_pred             HHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         199 KEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       199 ~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .+++....+.|.|||++|||++.+..+||++++|+ .|+.
T Consensus       186 ~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~-~G~i  224 (256)
T 1vpl_A          186 RKILKQASQEGLTILVSSHNMLEVEFLCDRIALIH-NGTI  224 (256)
T ss_dssp             HHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEE-TTEE
T ss_pred             HHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEE-CCEE
Confidence            88887765558899999999999999999999998 6653

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=2.2e-35  Score=271.50  Aligned_cols=179  Identities=17%  Similarity=0.220  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----hHHHHHHHhhhhhccccccce
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----AAMSVAQRVSEEMDCQLGQEV  139 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v  139 (302)
                      .+++++++.|++|++++|+|||||||||||++|+|+++|++|++.++|.+....     ....+.+........++.+++
T Consensus        25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni  104 (372)
T 1v43_A           25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENI  104 (372)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHH
T ss_pred             EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHH
Confidence            357889999999999999999999999999999999999999999998654221     111122222334456778887


Q ss_pred             eeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         140 GYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       140 ~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                      .|..+....                   ...++.+..|||||+||++|||||+.+|++|||||   |++++|+.. ..+.
T Consensus       105 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE---P~s~LD~~~r~~l~  181 (372)
T 1v43_A          105 AFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE---PLSNLDAKLRVAMR  181 (372)
T ss_dssp             HTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES---TTTTSCHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CCccCCHHHHHHHH
Confidence            765432111                   11245567799999999999999999999999999   999999887 6777


Q ss_pred             HHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         200 EVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       200 ~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                      +++++.. +.|.|+|++|||++++..+||++++|+ .|+.    .|.+++..|
T Consensus       182 ~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~-~G~i~~~g~~~~l~~~p  233 (372)
T 1v43_A          182 AEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN-RGQLLQIGSPTEVYLRP  233 (372)
T ss_dssp             HHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHCC
T ss_pred             HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEeCCHHHHHhCc
Confidence            7777653 348899999999999999999999998 6653    455554433

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=3.3e-35  Score=258.72  Aligned_cols=169  Identities=11%  Similarity=0.052  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH----H----HHHHHhhhhhcccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA----M----SVAQRVSEEMDCQLGQ  137 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~----~----~~~~~~~~~~~~~~~~  137 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+......    .    .+.+........++.+
T Consensus        22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e  101 (257)
T 1g6h_A           22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLE  101 (257)
T ss_dssp             EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHH
T ss_pred             eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHH
Confidence            5778999999999999999999999999999999999999999999865432110    0    0111111122345555


Q ss_pred             ceeeeeee--------------------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCC
Q psy2071         138 EVGYSIRF--------------------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH  185 (302)
Q Consensus       138 ~v~~~~~~--------------------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~  185 (302)
                      ++.+....                                ......++.+..|||||+||++||+||+.+|++|||||  
T Consensus       102 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDE--  179 (257)
T 1g6h_A          102 NLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE--  179 (257)
T ss_dssp             HHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES--
T ss_pred             HHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC--
Confidence            55442211                                00011245567799999999999999999999999999  


Q ss_pred             CCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         186 ERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       186 ~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ||+++|+.. ..+.+++++..+.|.|||++|||++++..+||++++|+ .|+.
T Consensus       180 -Pts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~-~G~i  231 (257)
T 1g6h_A          180 -PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMF-NGQI  231 (257)
T ss_dssp             -TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEE-TTEE
T ss_pred             -CccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence             999999887 77888887765458999999999999999999999998 6653

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=3.1e-35  Score=256.37  Aligned_cols=169  Identities=14%  Similarity=0.128  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH----HHHhhh----hhcccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV----AQRVSE----EMDCQLGQ  137 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~----~~~~~~----~~~~~~~~  137 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+.........    ..++.+    ....++.+
T Consensus        21 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e  100 (240)
T 1ji0_A           21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYE  100 (240)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHH
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHH
Confidence            4678899999999999999999999999999999999999999999876432111100    111111    12335555


Q ss_pred             ceeeeee------------------e-cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071         138 EVGYSIR------------------F-EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV  197 (302)
Q Consensus       138 ~v~~~~~------------------~-~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~  197 (302)
                      ++.+...                  + ......++.+..|||||+||++||+||+.+|++|||||   ||+++|+.. ..
T Consensus       101 nl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDE---Pts~LD~~~~~~  177 (240)
T 1ji0_A          101 NLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE---PSLGLAPILVSE  177 (240)
T ss_dssp             HHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEEC---TTTTCCHHHHHH
T ss_pred             HHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC---CcccCCHHHHHH
Confidence            5543210                  0 00011244567799999999999999999999999999   999999887 77


Q ss_pred             HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         198 LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       198 l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +.+++....+.|.|+|++|||++++..+||++++|+ .|+.
T Consensus       178 l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~-~G~i  217 (240)
T 1ji0_A          178 VFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLE-TGQI  217 (240)
T ss_dssp             HHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEE-TTEE
T ss_pred             HHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence            888887665458899999999999999999999998 6653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=1.1e-35  Score=271.29  Aligned_cols=178  Identities=19%  Similarity=0.196  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhcccccccee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEVG  140 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~  140 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+.....     ...+.+........++.+++.
T Consensus        15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~   94 (348)
T 3d31_A           15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLE   94 (348)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHH
T ss_pred             EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHH
Confidence            567889999999999999999999999999999999999999999986542211     111112222233456777776


Q ss_pred             eeeeec----------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071         141 YSIRFE----------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK  203 (302)
Q Consensus       141 ~~~~~~----------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~  203 (302)
                      |.....                .....++.+..|||||+||++|||||+.+|++|||||   |++++|+.. ..+.++++
T Consensus        95 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDE---P~s~LD~~~~~~l~~~l~  171 (348)
T 3d31_A           95 FGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDE---PLSALDPRTQENAREMLS  171 (348)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEES---SSTTSCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC---ccccCCHHHHHHHHHHHH
Confidence            543211                0112355677899999999999999999999999999   999999887 67777777


Q ss_pred             HcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         204 QRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       204 ~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                      +.. +.|.|+|++|||++++..+||++++|+ .|+.    .|.+++..|
T Consensus       172 ~l~~~~g~tii~vTHd~~~~~~~adri~vl~-~G~i~~~g~~~~~~~~p  219 (348)
T 3d31_A          172 VLHKKNKLTVLHITHDQTEARIMADRIAVVM-DGKLIQVGKPEEIFEKP  219 (348)
T ss_dssp             HHHHHTTCEEEEEESCHHHHHHHCSEEEEES-SSCEEEEECHHHHHSSC
T ss_pred             HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEECCHHHHHhCc
Confidence            653 458999999999999999999999998 6653    455554433

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.98  E-value=2.1e-35  Score=271.92  Aligned_cols=178  Identities=18%  Similarity=0.209  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh------hh-----HHHHHHHhhhhhccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR------VA-----AMSVAQRVSEEMDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~------~~-----~~~~~~~~~~~~~~~  134 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+...      ..     ...+.+........+
T Consensus        18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~lt   97 (372)
T 1g29_1           18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMT   97 (372)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSC
T ss_pred             EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCC
Confidence            5678899999999999999999999999999999999999999998865322      11     111112222233456


Q ss_pred             cccceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         135 LGQEVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       135 ~~~~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+++.|..+...                   ....++.+..|||||+||++|||||+.+|++|||||   |++++|+..
T Consensus        98 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE---P~s~LD~~~  174 (372)
T 1g29_1           98 VYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDE---PLSNLDAKL  174 (372)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEEC---TTTTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECC---CCccCCHHH
Confidence            7777766432211                   012345667899999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         196 -GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       196 -~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                       ..+.+++++.. +.|.|+|++|||++++..+||++++|+ .|+.    .|.+++..|
T Consensus       175 r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~-~G~i~~~g~~~~l~~~p  231 (372)
T 1g29_1          175 RVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMN-RGVLQQVGSPDEVYDKP  231 (372)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEe-CCEEEEeCCHHHHHhCc
Confidence             66777776653 348899999999999999999999998 6653    455554433

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.97  E-value=8.4e-35  Score=253.33  Aligned_cols=167  Identities=19%  Similarity=0.191  Sum_probs=127.0

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhccccccceee
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEVGY  141 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~  141 (302)
                      ++++++.+++ ++++|+||||||||||+++|+|+++|++|++.++|.+.....     ...+.+........++.+++.+
T Consensus        15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~   93 (240)
T 2onk_A           15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY   93 (240)
T ss_dssp             EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred             EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHH
Confidence            5778899999 999999999999999999999999999999999886542110     0011111111123355555543


Q ss_pred             eeee-----------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071         142 SIRF-----------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK  203 (302)
Q Consensus       142 ~~~~-----------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~  203 (302)
                      ....                 ......++.+..|||||+||++||+||+.+|++|||||   ||+++|+.. ..+.+++.
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE---Pts~LD~~~~~~~~~~l~  170 (240)
T 2onk_A           94 GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDE---PLSAVDLKTKGVLMEELR  170 (240)
T ss_dssp             TCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES---TTSSCCHHHHHHHHHHHH
T ss_pred             HHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHHHHHHHH
Confidence            2211                 01112345677899999999999999999999999999   999999887 77888887


Q ss_pred             HcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         204 QRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       204 ~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      ...+ .|.||+++|||++++..+||++++|+ .|+.
T Consensus       171 ~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~-~G~i  205 (240)
T 2onk_A          171 FVQREFDVPILHVTHDLIEAAMLADEVAVML-NGRI  205 (240)
T ss_dssp             HHHHHHTCCEEEEESCHHHHHHHCSEEEEEE-TTEE
T ss_pred             HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            6543 47899999999999999999999998 6653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.97  E-value=1.5e-33  Score=249.82  Aligned_cols=168  Identities=13%  Similarity=0.129  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhhh---hccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSEE---MDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~v  139 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|+|.++|.+...........   ++.+.   +..++.+++
T Consensus        34 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl  113 (271)
T 2ixe_A           34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI  113 (271)
T ss_dssp             CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHH
T ss_pred             eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHH
Confidence            578899999999999999999999999999999999999999999987653221111111   12221   123556665


Q ss_pred             eeeeeecC-------------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         140 GYSIRFED-------------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       140 ~~~~~~~~-------------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      .+......                         ....++....|||||+||++|||||+.+|++|||||   ||+++|+.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDE---Pts~LD~~  190 (271)
T 2ixe_A          114 AYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDN---ATSALDAG  190 (271)
T ss_dssp             HTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEES---TTTTCCHH
T ss_pred             hhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEEC---CccCCCHH
Confidence            44321100                         001234566799999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         195 M-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       195 ~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      . ..+.+++.... +.+.|||++|||++.+. .||++++|+ .|+.
T Consensus       191 ~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~d~v~~l~-~G~i  234 (271)
T 2ixe_A          191 NQLRVQRLLYESPEWASRTVLLITQQLSLAE-RAHHILFLK-EGSV  234 (271)
T ss_dssp             HHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-TCSEEEEEE-TTEE
T ss_pred             HHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hCCEEEEEE-CCEE
Confidence            8 77888888764 35889999999999886 599999998 6653

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.97  E-value=1.6e-34  Score=256.96  Aligned_cols=170  Identities=16%  Similarity=0.172  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch--hhhHH-------HHHHHhh--hhhcc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR--RVAAM-------SVAQRVS--EEMDC  133 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~--~~~~~-------~~~~~~~--~~~~~  133 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+..  .....       .+.+...  .....
T Consensus        35 ~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~l  114 (279)
T 2ihy_A           35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGE  114 (279)
T ss_dssp             EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTS
T ss_pred             EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCC
Confidence            3578899999999999999999999999999999999999999999987643  11110       1111111  11123


Q ss_pred             ccccceeeeee----e-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071         134 QLGQEVGYSIR----F-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA  190 (302)
Q Consensus       134 ~~~~~v~~~~~----~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~  190 (302)
                      ++.+++.+...    +                   ......++.+..|||||+||++||+||+.+|++|||||   ||++
T Consensus       115 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDE---Pts~  191 (279)
T 2ihy_A          115 RVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDE---PAAG  191 (279)
T ss_dssp             BHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES---TTTT
T ss_pred             CHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC---Cccc
Confidence            66666644210    0                   00011245667799999999999999999999999999   9999


Q ss_pred             hHHHH-HHHHHHHHHcCCCcEEE--EEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         191 TDILM-GVLKEVIKQRADLKLVI--MSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       191 lD~~~-~~l~~ll~~~~~~~~~i--i~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +|+.. ..+.+++....+.|.||  |++|||++++..+||++++|+ .|+.
T Consensus       192 LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~-~G~i  241 (279)
T 2ihy_A          192 LDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLK-DGQS  241 (279)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEE-TTEE
T ss_pred             cCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence            99887 77888887654447788  999999999999999999998 6653

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.97  E-value=3.7e-34  Score=250.49  Aligned_cols=168  Identities=17%  Similarity=0.154  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh----hhccccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE----EMDCQLGQE  138 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~  138 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|+ |++.+.|.+...........   ++.+    ....++.++
T Consensus        15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~   93 (249)
T 2qi9_C           15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY   93 (249)
T ss_dssp             TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHH
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHH
Confidence            467789999999999999999999999999999999999 99999987643221111111   1122    123355555


Q ss_pred             eeeeeee--------------cCCCCccccccccCHHHHHHHhccccCCCCCc-------EEEEcCCCCCCcchHHHH-H
Q psy2071         139 VGYSIRF--------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQ-------VILLDEAHERTLATDILM-G  196 (302)
Q Consensus       139 v~~~~~~--------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~-------lliLDE~~~p~~~lD~~~-~  196 (302)
                      +.+....              ......++.+..|||||+||++||+||+.+|+       +|||||   ||+++|+.. .
T Consensus        94 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDE---Pts~LD~~~~~  170 (249)
T 2qi9_C           94 LTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE---PMNSLDVAQQS  170 (249)
T ss_dssp             HHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS---TTTTCCHHHHH
T ss_pred             HHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEEC---CcccCCHHHHH
Confidence            5442100              00012245667899999999999999999999       999999   999999887 7


Q ss_pred             HHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         197 VLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       197 ~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .+.++++...+.|.|||++|||++.+..+||++++|+ .|+.
T Consensus       171 ~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~-~G~i  211 (249)
T 2qi9_C          171 ALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLK-GGKM  211 (249)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE-TTEE
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            7888887765448899999999999999999999998 6653

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.97  E-value=3.8e-34  Score=253.10  Aligned_cols=169  Identities=14%  Similarity=0.195  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhh-----hhcccccccee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSE-----EMDCQLGQEVG  140 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~  140 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+............+.+     ....++.+++.
T Consensus        22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~  101 (266)
T 2yz2_A           22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVA  101 (266)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHH
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHH
Confidence            4678899999999999999999999999999999999999999998865432100000011111     12335555554


Q ss_pred             eeeee-----------------cCC---CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         141 YSIRF-----------------EDC---SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       141 ~~~~~-----------------~~~---~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                      +....                 ...   ...++.+..|||||+||++||+||+.+|++|||||   ||+++|+.. ..+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE---Pts~LD~~~~~~l~  178 (266)
T 2yz2_A          102 FAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE---PLVGLDREGKTDLL  178 (266)
T ss_dssp             HTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES---TTTTCCHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC---ccccCCHHHHHHHH
Confidence            32110                 011   11245667899999999999999999999999999   999999887 7788


Q ss_pred             HHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         200 EVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       200 ~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +++....+.|.|||++|||++.+..+||++++|+ .|+.
T Consensus       179 ~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~-~G~i  216 (266)
T 2yz2_A          179 RIVEKWKTLGKTVILISHDIETVINHVDRVVVLE-KGKK  216 (266)
T ss_dssp             HHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEE-TTEE
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            8887764348899999999999999999999998 6654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.97  E-value=3.2e-33  Score=244.46  Aligned_cols=167  Identities=14%  Similarity=0.135  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhhh---hccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSEE---MDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~v  139 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+...........   .+.+.   +..++.+++
T Consensus        24 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl  103 (247)
T 2ff7_A           24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI  103 (247)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHH
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHH
Confidence            467889999999999999999999999999999999999999999987643221111111   12221   123566666


Q ss_pred             eeeeeecC------------C------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFED------------C------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~~------------~------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+......            .            ...+.....|||||+||++|||||+.+|++|||||   ||+++|+..
T Consensus       104 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDE---Pts~LD~~~  180 (247)
T 2ff7_A          104 SLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE---ATSALDYES  180 (247)
T ss_dssp             TTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECC---CCSCCCHHH
T ss_pred             hccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHH
Confidence            54311000            0            00112346799999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+++.... .+.|||++|||++.+. .||++++|+ .|+.
T Consensus       181 ~~~i~~~l~~~~-~g~tviivtH~~~~~~-~~d~v~~l~-~G~i  221 (247)
T 2ff7_A          181 EHVIMRNMHKIC-KGRTVIIIAHRLSTVK-NADRIIVME-KGKI  221 (247)
T ss_dssp             HHHHHHHHHHHH-TTSEEEEECSSGGGGT-TSSEEEEEE-TTEE
T ss_pred             HHHHHHHHHHHc-CCCEEEEEeCCHHHHH-hCCEEEEEE-CCEE
Confidence             77888887664 3789999999999885 599999998 6653

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.97  E-value=1.3e-33  Score=247.79  Aligned_cols=168  Identities=16%  Similarity=0.113  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee------cCchhhhHHHHHHHhhhhh----c---
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC------TQPRRVAAMSVAQRVSEEM----D---  132 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~------~~~~~~~~~~~~~~~~~~~----~---  132 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+..      +++.-....++...+....    .   
T Consensus        20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~   99 (253)
T 2nq2_C           20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFA   99 (253)
T ss_dssp             EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTC
T ss_pred             EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhccccc
Confidence            46788999999999999999999999999999999999999886311      1110000011111111000    0   


Q ss_pred             ---cccccceeeeee-ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCC
Q psy2071         133 ---CQLGQEVGYSIR-FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRAD  207 (302)
Q Consensus       133 ---~~~~~~v~~~~~-~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~  207 (302)
                         ....+.+...+. +......++.+..|||||+||++||+||+.+|++|||||   ||+++|+.. ..+.+++....+
T Consensus       100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDE---Pts~LD~~~~~~l~~~l~~l~~  176 (253)
T 2nq2_C          100 KPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDE---PTSALDLANQDIVLSLLIDLAQ  176 (253)
T ss_dssp             CCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESS---SSTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHHHHHHHHHHHH
Confidence               000000110111 111112345678899999999999999999999999999   999999887 778888876644


Q ss_pred             C-cEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         208 L-KLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       208 ~-~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      . |.|||++|||++.+..+||++++|+ .|+
T Consensus       177 ~~g~tvi~vtHd~~~~~~~~d~v~~l~-~G~  206 (253)
T 2nq2_C          177 SQNMTVVFTTHQPNQVVAIANKTLLLN-KQN  206 (253)
T ss_dssp             TSCCEEEEEESCHHHHHHHCSEEEEEE-TTE
T ss_pred             hcCCEEEEEecCHHHHHHhCCEEEEEe-CCe
Confidence            4 8899999999999999999999998 665

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.97  E-value=2.4e-34  Score=246.06  Aligned_cols=163  Identities=13%  Similarity=0.120  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch----hhhHHHHHHHhhhhhcccccccee
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR----RVAAMSVAQRVSEEMDCQLGQEVG  140 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~  140 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+..    .++.+  .+........++.+++.
T Consensus        23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v--~q~~~~~~~~tv~enl~  100 (214)
T 1sgw_A           23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFL--PEEIIVPRKISVEDYLK  100 (214)
T ss_dssp             EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEE--CSSCCCCTTSBHHHHHH
T ss_pred             eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEE--eCCCcCCCCCCHHHHHH
Confidence            4578889999999999999999999999999999999999999999886542    01110  11101111224444433


Q ss_pred             eeee-----------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHH
Q psy2071         141 YSIR-----------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVI  202 (302)
Q Consensus       141 ~~~~-----------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll  202 (302)
                      +...                 +..... ++.+..||+||+||++||+||+.+|++|||||   ||+++|+.. ..+.+++
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDE---Pts~LD~~~~~~l~~~l  176 (214)
T 1sgw_A          101 AVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDD---PVVAIDEDSKHKVLKSI  176 (214)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEES---TTTTSCTTTHHHHHHHH
T ss_pred             HHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC---CCcCCCHHHHHHHHHHH
Confidence            2210                 111112 56678899999999999999999999999999   999999877 7777777


Q ss_pred             HHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         203 KQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       203 ~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      ....+.+.||+++|||++++..+||+++++.
T Consensus       177 ~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~  207 (214)
T 1sgw_A          177 LEILKEKGIVIISSREELSYCDVNENLHKYS  207 (214)
T ss_dssp             HHHHHHHSEEEEEESSCCTTSSEEEEGGGGB
T ss_pred             HHHHhCCCEEEEEeCCHHHHHHhCCEEEEeC
Confidence            7655447899999999999999999998875

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.97  E-value=9.9e-34  Score=248.27  Aligned_cols=169  Identities=15%  Similarity=0.113  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc--ccccCCCEEEeecCchhhhHHHHH----HHhhh----hhcccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE--YSKSVGAKAVACTQPRRVAAMSVA----QRVSE----EMDCQL  135 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~--~~~~~G~~~i~~~~~~~~~~~~~~----~~~~~----~~~~~~  135 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+  ++|++|++.++|.+..........    ..+.+    ....++
T Consensus        18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   97 (250)
T 2d2e_A           18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTI   97 (250)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBH
T ss_pred             EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCH
Confidence            46788999999999999999999999999999998  789999999998754321111100    01111    112233


Q ss_pred             ccceeeeee---------------------ecCC--CCccccccc-cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071         136 GQEVGYSIR---------------------FEDC--SSPKTVLKY-MTDGMLLREGMSDPMLENYQVILLDEAHERTLAT  191 (302)
Q Consensus       136 ~~~v~~~~~---------------------~~~~--~~~~~~~~~-lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l  191 (302)
                      .+++.+...                     ....  ...++.+.. |||||+||++||+||+.+|++|||||   ||+++
T Consensus        98 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDE---Pts~L  174 (250)
T 2d2e_A           98 ANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDE---TDSGL  174 (250)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEEC---GGGTT
T ss_pred             HHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeC---CCcCC
Confidence            344332110                     0011  123455667 99999999999999999999999999   99999


Q ss_pred             HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhh-ccCCCeeeecCcC
Q psy2071         192 DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQY-FDNAPLMNVPGRT  238 (302)
Q Consensus       192 D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~-~d~~~~l~i~g~~  238 (302)
                      |+.. ..+.+++....+.|.|||++|||++.+..+ ||++++|+ .|+.
T Consensus       175 D~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~-~G~i  222 (250)
T 2d2e_A          175 DIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMM-DGRV  222 (250)
T ss_dssp             CHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEE-TTEE
T ss_pred             CHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEE-CCEE
Confidence            9887 778888887766689999999999999988 59999998 6653

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.97  E-value=1.7e-33  Score=252.81  Aligned_cols=167  Identities=17%  Similarity=0.190  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~v  139 (302)
                      +++++++.|++|++++|+||||||||||+++|+|++.|++|.|.++|.+............   +.+   .+..++.+|+
T Consensus        69 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi  148 (306)
T 3nh6_A           69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNI  148 (306)
T ss_dssp             EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHH
T ss_pred             eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHH
Confidence            5789999999999999999999999999999999999999999999987654332222222   222   2234666666


Q ss_pred             eeeeeecCC------------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFEDC------------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~~~------------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+.......                        .........|||||+||++|||||+.+|++|||||   ||+++|+..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDE---Pts~LD~~~  225 (306)
T 3nh6_A          149 RYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDE---ATSALDTSN  225 (306)
T ss_dssp             HTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEC---CSSCCCHHH
T ss_pred             HhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEC---CcccCCHHH
Confidence            543211000                        00112235699999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+++..... +.|+|++||+++.+.. ||+|++|+ .|+.
T Consensus       226 ~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~-aD~i~vl~-~G~i  266 (306)
T 3nh6_A          226 ERAIQASLAKVCA-NRTTIVVAHRLSTVVN-ADQILVIK-DGCI  266 (306)
T ss_dssp             HHHHHHHHHHHHT-TSEEEEECCSHHHHHT-CSEEEEEE-TTEE
T ss_pred             HHHHHHHHHHHcC-CCEEEEEEcChHHHHc-CCEEEEEE-CCEE
Confidence             677777776544 5688899999999976 99999998 6654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.97  E-value=6.2e-33  Score=242.23  Aligned_cols=167  Identities=16%  Similarity=0.159  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH---HHHHHhhh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM---SVAQRVSE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~v  139 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+.......   .....+.+   .+..++.+++
T Consensus        17 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl   96 (243)
T 1mv5_A           17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENL   96 (243)
T ss_dssp             SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHT
T ss_pred             eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHH
Confidence            46788999999999999999999999999999999999999999988654221100   00011111   1123555665


Q ss_pred             eeeeeec-------------CC-CC-----------ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         140 GYSIRFE-------------DC-SS-----------PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       140 ~~~~~~~-------------~~-~~-----------~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      .+.....             .. ..           .+.....|||||+||++|||||+.+|++|||||   ||+++|+.
T Consensus        97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDE---Pts~LD~~  173 (243)
T 1mv5_A           97 TYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDE---ATASLDSE  173 (243)
T ss_dssp             TSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEC---CSCSSCSS
T ss_pred             hhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEEC---CcccCCHH
Confidence            5431000             00 00           012346899999999999999999999999999   99999987


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      . ..+.+++.... .+.|+|++|||++.+. .||++++|+ .|+.
T Consensus       174 ~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~-~G~i  215 (243)
T 1mv5_A          174 SESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIE-KGQI  215 (243)
T ss_dssp             SCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEE-TTEE
T ss_pred             HHHHHHHHHHHhc-CCCEEEEEeCChHHHH-hCCEEEEEE-CCEE
Confidence            7 67777777655 4889999999999885 699999998 6653

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.97  E-value=1.6e-32  Score=241.89  Aligned_cols=160  Identities=15%  Similarity=0.114  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh------hh-HHHHHHHhhhhhccccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR------VA-AMSVAQRVSEEMDCQLGQE  138 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~  138 (302)
                      +++++++.|+ |++++|+||||||||||+++|+|++ |++|++.+.|.+...      ++ .+.  +... . ..++.++
T Consensus        20 il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~--Q~~~-l-~~tv~en   93 (263)
T 2pjz_A           20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLP--EAYE-I-GVTVNDI   93 (263)
T ss_dssp             EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCG--GGSC-T-TSBHHHH
T ss_pred             eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeC--CCCc-c-CCcHHHH
Confidence            4677899999 9999999999999999999999999 999999998865321      12 111  1111 1 3344444


Q ss_pred             eeeeee---------------ecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071         139 VGYSIR---------------FEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV  201 (302)
Q Consensus       139 v~~~~~---------------~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l  201 (302)
                      +.+...               +... ...++.+..|||||+||++||+||+.+|++|||||   ||+++|+.. ..+.++
T Consensus        94 l~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE---Pts~LD~~~~~~l~~~  170 (263)
T 2pjz_A           94 VYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDE---PFENVDAARRHVISRY  170 (263)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEC---TTTTCCHHHHHHHHHH
T ss_pred             HHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC---CccccCHHHHHHHHHH
Confidence            433211               1111 12356678899999999999999999999999999   999999887 778888


Q ss_pred             HHHcCCCcEEEEEEecCHHHHHhhcc-CCCeeeecCcC
Q psy2071         202 IKQRADLKLVIMSATLDAGKFQQYFD-NAPLMNVPGRT  238 (302)
Q Consensus       202 l~~~~~~~~~ii~~thd~~~~~~~~d-~~~~l~i~g~~  238 (302)
                      +....+   |+|++|||++.+..+|| ++++|+ .|+.
T Consensus       171 L~~~~~---tviivtHd~~~~~~~~d~~i~~l~-~G~i  204 (263)
T 2pjz_A          171 IKEYGK---EGILVTHELDMLNLYKEYKAYFLV-GNRL  204 (263)
T ss_dssp             HHHSCS---EEEEEESCGGGGGGCTTSEEEEEE-TTEE
T ss_pred             HHHhcC---cEEEEEcCHHHHHHhcCceEEEEE-CCEE
Confidence            887654   99999999999999999 999998 5653

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.97  E-value=6.6e-33  Score=245.20  Aligned_cols=170  Identities=14%  Similarity=0.075  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc--ccccCCCEEEeecCchhhhHHHHH----HHhhhhh----ccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE--YSKSVGAKAVACTQPRRVAAMSVA----QRVSEEM----DCQ  134 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~--~~~~~G~~~i~~~~~~~~~~~~~~----~~~~~~~----~~~  134 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|+  ++|++|++.+.|.+..........    ..+.+..    ..+
T Consensus        34 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~t  113 (267)
T 2zu0_C           34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVS  113 (267)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCB
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccccc
Confidence            357889999999999999999999999999999998  478999999998754321110000    0111111    111


Q ss_pred             cccceeee-------------------------eeecCC--CCcccccc-ccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071         135 LGQEVGYS-------------------------IRFEDC--SSPKTVLK-YMTDGMLLREGMSDPMLENYQVILLDEAHE  186 (302)
Q Consensus       135 ~~~~v~~~-------------------------~~~~~~--~~~~~~~~-~lS~G~~qr~~la~al~~~p~lliLDE~~~  186 (302)
                      +.+++.+.                         +.....  ...++.+. .|||||+||++||+||+.+|++|||||   
T Consensus       114 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDE---  190 (267)
T 2zu0_C          114 NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE---  190 (267)
T ss_dssp             HHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEES---
T ss_pred             HHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeC---
Confidence            22221110                         000111  12244555 599999999999999999999999999   


Q ss_pred             CCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhh-ccCCCeeeecCcC
Q psy2071         187 RTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQY-FDNAPLMNVPGRT  238 (302)
Q Consensus       187 p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~-~d~~~~l~i~g~~  238 (302)
                      ||+++|+.. ..+.++++...+.|.|||++|||++.+..+ ||++++|+ .|+.
T Consensus       191 Pts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~-~G~i  243 (267)
T 2zu0_C          191 SDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLY-QGRI  243 (267)
T ss_dssp             TTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEE-TTEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEE-CCEE
Confidence            999999887 788888887766689999999999999886 89999998 6653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.96  E-value=5e-33  Score=241.89  Aligned_cols=160  Identities=16%  Similarity=0.157  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee-
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR-  144 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  144 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.    ++.+.+..   ..+..++.+++.+... 
T Consensus        20 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~----i~~v~Q~~---~~~~~tv~enl~~~~~~   92 (237)
T 2cbz_A           20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS----VAYVPQQA---WIQNDSLRENILFGCQL   92 (237)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSC----EEEECSSC---CCCSEEHHHHHHTTSCC
T ss_pred             eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE----EEEEcCCC---cCCCcCHHHHhhCcccc
Confidence            467889999999999999999999999999999999999999988762    11110000   0011122222221110 


Q ss_pred             -----------------ecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071         145 -----------------FEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV  201 (302)
Q Consensus       145 -----------------~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l  201 (302)
                                       +...     ...++....|||||+||++|||||+.+|++|||||   ||+++|+.. ..+.++
T Consensus        93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE---Pts~LD~~~~~~i~~~  169 (237)
T 2cbz_A           93 EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD---PLSAVDAHVGKHIFEN  169 (237)
T ss_dssp             CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEES---TTTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC---cccccCHHHHHHHHHH
Confidence                             0000     01234567899999999999999999999999999   999999887 667777


Q ss_pred             HH---HcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         202 IK---QRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       202 l~---~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +.   ... .+.|+|++|||++.+. +||++++|+ .|+.
T Consensus       170 l~~~~~~~-~~~tviivtH~~~~~~-~~d~v~~l~-~G~i  206 (237)
T 2cbz_A          170 VIGPKGML-KNKTRILVTHSMSYLP-QVDVIIVMS-GGKI  206 (237)
T ss_dssp             TTSTTSTT-TTSEEEEECSCSTTGG-GSSEEEEEE-TTEE
T ss_pred             HHHHHhhc-CCCEEEEEecChHHHH-hCCEEEEEe-CCEE
Confidence            63   222 3789999999999874 799999998 6653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.96  E-value=1.5e-32  Score=242.07  Aligned_cols=166  Identities=14%  Similarity=0.179  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhhh---hccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSEE---MDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~v  139 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++| +|++.++|.+...........   ++.+.   +..++.+++
T Consensus        35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl  113 (260)
T 2ghi_A           35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI  113 (260)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHH
T ss_pred             eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHH
Confidence            46788999999999999999999999999999999987 799999987653321111111   11111   123555555


Q ss_pred             eeeeeec------------C-------CC-C----ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFE------------D-------CS-S----PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~------------~-------~~-~----~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+.....            .       .. .    .+.....|||||+||++|||||+.+|++|||||   ||+++|+..
T Consensus       114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE---Pts~LD~~~  190 (260)
T 2ghi_A          114 LYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDE---ATSSLDSKT  190 (260)
T ss_dssp             HTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEEC---CCCTTCHHH
T ss_pred             hccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEEC---ccccCCHHH
Confidence            4321000            0       00 0    012346799999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+++....+ +.|+|++|||++.+. .||++++|+ .|+.
T Consensus       191 ~~~i~~~l~~l~~-~~tviivtH~~~~~~-~~d~i~~l~-~G~i  231 (260)
T 2ghi_A          191 EYLFQKAVEDLRK-NRTLIIIAHRLSTIS-SAESIILLN-KGKI  231 (260)
T ss_dssp             HHHHHHHHHHHTT-TSEEEEECSSGGGST-TCSEEEEEE-TTEE
T ss_pred             HHHHHHHHHHhcC-CCEEEEEcCCHHHHH-hCCEEEEEE-CCEE
Confidence             778888887655 789999999999885 599999998 6653

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.96  E-value=1.9e-32  Score=237.11  Aligned_cols=160  Identities=14%  Similarity=0.140  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee-
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR-  144 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  144 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.    ++.+.+...   .+..++.+++.+... 
T Consensus        23 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----i~~v~q~~~---~~~~tv~enl~~~~~~   95 (229)
T 2pze_A           23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQFSW---IMPGTIKENIIFGVSY   95 (229)
T ss_dssp             SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSC----EEEECSSCC---CCSBCHHHHHHTTSCC
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCE----EEEEecCCc---ccCCCHHHHhhccCCc
Confidence            467889999999999999999999999999999999999999988762    110000000   000122222211100 


Q ss_pred             -----------------ecCCC-----CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071         145 -----------------FEDCS-----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV  201 (302)
Q Consensus       145 -----------------~~~~~-----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l  201 (302)
                                       .....     ........|||||+||++|||||+.+|++|||||   ||+++|+.. ..+.++
T Consensus        96 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDE---Pts~LD~~~~~~i~~~  172 (229)
T 2pze_A           96 DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDS---PFGYLDVLTEKEIFES  172 (229)
T ss_dssp             CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEES---TTTTSCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC---cccCCCHHHHHHHHHH
Confidence                             00000     1122346899999999999999999999999999   999999887 667665


Q ss_pred             -HHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         202 -IKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       202 -l~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       +....+ +.|+|++|||++.+. .||++++|+ .|+.
T Consensus       173 l~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~-~G~i  207 (229)
T 2pze_A          173 CVCKLMA-NKTRILVTSKMEHLK-KADKILILH-EGSS  207 (229)
T ss_dssp             CCCCCTT-TSEEEEECCCHHHHH-HCSEEEEEE-TTEE
T ss_pred             HHHHhhC-CCEEEEEcCChHHHH-hCCEEEEEE-CCEE
Confidence             344433 789999999999886 599999998 6653

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.96  E-value=2.5e-32  Score=252.60  Aligned_cols=176  Identities=13%  Similarity=0.178  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh---hhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~  138 (302)
                      .+++++++.|++||+++|+||||||||||+++|+|+++ ++|+|.++|.+...........   .+++   .+..++.++
T Consensus        35 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~en  113 (390)
T 3gd7_A           35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN  113 (390)
T ss_dssp             CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHH
T ss_pred             EEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHH
Confidence            35788999999999999999999999999999999998 8999999997654322211111   1222   122355566


Q ss_pred             eeeeeeec-----------CC-CCccccccc-----------cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         139 VGYSIRFE-----------DC-SSPKTVLKY-----------MTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       139 v~~~~~~~-----------~~-~~~~~~~~~-----------lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+.....           .. ...++....           |||||+||++|||||+.+|++|||||   |++++|+..
T Consensus       114 l~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDE---Pts~LD~~~  190 (390)
T 3gd7_A          114 LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE---PSAHLDPVT  190 (390)
T ss_dssp             HCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEES---HHHHSCHHH
T ss_pred             hhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeC---CccCCCHHH
Confidence            54211100           00 011222333           99999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTP  247 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~  247 (302)
                       ..+.+++++.. .+.|+|++|||++.+ .+||++++|+ .|+    +.|.+++..|
T Consensus       191 ~~~l~~~l~~~~-~~~tvi~vtHd~e~~-~~aDri~vl~-~G~i~~~g~~~el~~~p  244 (390)
T 3gd7_A          191 YQIIRRTLKQAF-ADCTVILCEARIEAM-LECDQFLVIE-ENKVRQYDSILELYHYP  244 (390)
T ss_dssp             HHHHHHHHHTTT-TTSCEEEECSSSGGG-TTCSEEEEEE-TTEEEEESSHHHHHHCC
T ss_pred             HHHHHHHHHHHh-CCCEEEEEEcCHHHH-HhCCEEEEEE-CCEEEEECCHHHHHhCC
Confidence             67778877654 378999999998655 5699999998 554    3565655544

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.95  E-value=6.1e-30  Score=249.54  Aligned_cols=168  Identities=16%  Similarity=0.213  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh---hhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~  138 (302)
                      .+++++++.+++|++++|+||||||||||+++++|+++|++|++.++|.+...........   .+.+   .+..++.+|
T Consensus       357 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en  436 (582)
T 3b5x_A          357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANN  436 (582)
T ss_pred             cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHH
Confidence            4689999999999999999999999999999999999999999999997654322211111   1111   123466677


Q ss_pred             eeeee-eecCCC------------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         139 VGYSI-RFEDCS------------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       139 v~~~~-~~~~~~------------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      +.+.. ......                        ........||||||||++|||||+.+|++|||||   ||+++|+
T Consensus       437 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDE---pts~LD~  513 (582)
T 3b5x_A          437 IAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDE---ATSALDT  513 (582)
T ss_pred             HhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC---ccccCCH
Confidence            66542 100000                        0011235799999999999999999999999999   9999998


Q ss_pred             HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .. ..+.+.+....+ +.|++++||+++.+. .||++++|+ .|+.
T Consensus       514 ~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~-~G~i  556 (582)
T 3b5x_A          514 ESERAIQAALDELQK-NKTVLVIAHRLSTIE-QADEILVVD-EGEI  556 (582)
T ss_pred             HHHHHHHHHHHHHcC-CCEEEEEecCHHHHH-hCCEEEEEE-CCEE
Confidence            88 778888877654 789999999999886 799999998 6653

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.95  E-value=3e-30  Score=252.28  Aligned_cols=167  Identities=17%  Similarity=0.175  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v  139 (302)
                      +++++++.+++|++++|+||||||||||+++++|+++|++|++.++|.+............+   .+   .+..++.+|+
T Consensus       370 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni  449 (598)
T 3qf4_B          370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENL  449 (598)
T ss_dssp             SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHH
T ss_pred             cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHH
Confidence            57889999999999999999999999999999999999999999999876554333222222   22   2234666776


Q ss_pred             eeeeeecCCC--------------------Cccc----cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFEDCS--------------------SPKT----VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~~~~--------------------~~~~----~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+........                    ..++    ....||||||||++|||||+.+|++|||||   ||+++|+..
T Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDE---pts~LD~~~  526 (598)
T 3qf4_B          450 KYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDE---ATSNVDTKT  526 (598)
T ss_dssp             HSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECC---CCTTCCHHH
T ss_pred             hcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC---CccCCCHHH
Confidence            5532100000                    0011    124699999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+.+....+ +.|++++||+++.+.. ||++++|+ .|+.
T Consensus       527 ~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~-~G~i  567 (598)
T 3qf4_B          527 EKSIQAAMWKLME-GKTSIIIAHRLNTIKN-ADLIIVLR-DGEI  567 (598)
T ss_dssp             HHHHHHHHHHHHT-TSEEEEESCCTTHHHH-CSEEEEEC-SSSE
T ss_pred             HHHHHHHHHHHcC-CCEEEEEecCHHHHHc-CCEEEEEE-CCEE
Confidence             677777776543 7899999999998865 99999998 6653

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.95  E-value=1.1e-30  Score=233.14  Aligned_cols=160  Identities=14%  Similarity=0.119  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccccccee-----
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVG-----  140 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----  140 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.    ++.+.+...   .+..++.+++.     
T Consensus        53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~----i~~v~Q~~~---l~~~tv~enl~~~~~~  125 (290)
T 2bbs_A           53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQNSW---IMPGTIKENIIGVSYD  125 (290)
T ss_dssp             SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSC----EEEECSSCC---CCSSBHHHHHHTTCCC
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE----EEEEeCCCc---cCcccHHHHhhCcccc
Confidence            478889999999999999999999999999999999999999988652    100000000   00011111111     


Q ss_pred             ------------eeeeecCCC-----CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH-
Q psy2071         141 ------------YSIRFEDCS-----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV-  201 (302)
Q Consensus       141 ------------~~~~~~~~~-----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l-  201 (302)
                                  ..-......     ........|||||+||++|||||+.+|++|||||   |++++|+.. ..+.++ 
T Consensus       126 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDE---Pts~LD~~~~~~i~~~l  202 (290)
T 2bbs_A          126 EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDS---PFGYLDVLTEKEIFESC  202 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEES---TTTTCCHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEEC---CcccCCHHHHHHHHHHH
Confidence                        000000000     0112346899999999999999999999999999   999999887 667665 


Q ss_pred             HHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         202 IKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       202 l~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +.... .+.|||++|||++.+. +||++++|+ .|+.
T Consensus       203 l~~~~-~~~tviivtHd~~~~~-~~d~i~~l~-~G~i  236 (290)
T 2bbs_A          203 VCKLM-ANKTRILVTSKMEHLK-KADKILILH-EGSS  236 (290)
T ss_dssp             CCCCT-TTSEEEEECCCHHHHH-HSSEEEEEE-TTEE
T ss_pred             HHHhh-CCCEEEEEecCHHHHH-cCCEEEEEE-CCeE
Confidence            33333 3789999999999885 699999998 6653

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.95  E-value=3.9e-30  Score=250.90  Aligned_cols=167  Identities=14%  Similarity=0.154  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v  139 (302)
                      +++++++.|++||+++|+||||||||||+++++|+++|++|++.++|.+...........++   .+   .+..++.+|+
T Consensus       358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni  437 (587)
T 3qf4_A          358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENL  437 (587)
T ss_dssp             SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHH
T ss_pred             ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHH
Confidence            57889999999999999999999999999999999999999999999887654433333322   22   1233566666


Q ss_pred             eeeeeecC-------------------C-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFED-------------------C-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~~-------------------~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+......                   .     .........||||||||++|||||+.+|++|||||   ||+++|+..
T Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDE---pts~LD~~~  514 (587)
T 3qf4_A          438 KWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDD---CTSSVDPIT  514 (587)
T ss_dssp             TTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEES---CCTTSCHHH
T ss_pred             hccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEC---CcccCCHHH
Confidence            54321100                   0     00122335699999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+.++...+ +.|++++||+++.+. .||++++|+ .|+.
T Consensus       515 ~~~i~~~l~~~~~-~~tvi~itH~l~~~~-~~d~i~vl~-~G~i  555 (587)
T 3qf4_A          515 EKRILDGLKRYTK-GCTTFIITQKIPTAL-LADKILVLH-EGKV  555 (587)
T ss_dssp             HHHHHHHHHHHST-TCEEEEEESCHHHHT-TSSEEEEEE-TTEE
T ss_pred             HHHHHHHHHHhCC-CCEEEEEecChHHHH-hCCEEEEEE-CCEE
Confidence             677777776543 789999999999875 899999998 6653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.95  E-value=1.2e-29  Score=244.26  Aligned_cols=160  Identities=14%  Similarity=0.081  Sum_probs=114.5

Q ss_pred             HHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-------HHHHHHHhhhhhccc---ccccee
Q psy2071          71 MTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-------AMSVAQRVSEEMDCQ---LGQEVG  140 (302)
Q Consensus        71 ~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~v~  140 (302)
                      ++.|++||+++|+||||||||||+++|+|+++|++|++.+.+.......       ...+.+.+.......   ....+.
T Consensus       288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~  367 (538)
T 3ozx_A          288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFE  367 (538)
T ss_dssp             CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHH
T ss_pred             cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHH
Confidence            3457899999999999999999999999999999999976553311000       001111111000000   000000


Q ss_pred             eee-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcC-CCcEEEEEEec
Q psy2071         141 YSI-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRA-DLKLVIMSATL  217 (302)
Q Consensus       141 ~~~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~th  217 (302)
                      ..+ .+......++.+..|||||+||++||+||+.+|++|||||   ||+++|+.. ..+.+++++.. +.+.|||++||
T Consensus       368 ~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDE---PT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsH  444 (538)
T 3ozx_A          368 EVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQ---PSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH  444 (538)
T ss_dssp             HTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES---TTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred             HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            000 0111123456788999999999999999999999999999   999999887 67777777653 45889999999


Q ss_pred             CHHHHHhhccCCCeee
Q psy2071         218 DAGKFQQYFDNAPLMN  233 (302)
Q Consensus       218 d~~~~~~~~d~~~~l~  233 (302)
                      |++++..+||++++|+
T Consensus       445 dl~~~~~~aDri~vl~  460 (538)
T 3ozx_A          445 DLSIHDYIADRIIVFK  460 (538)
T ss_dssp             CHHHHHHHCSEEEEEE
T ss_pred             CHHHHHHhCCEEEEEe
Confidence            9999999999999998

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.95  E-value=4.5e-30  Score=250.16  Aligned_cols=167  Identities=14%  Similarity=0.170  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v  139 (302)
                      +++++++.+++|++++|+||||||||||+++++|+++|++|++.++|.+............+   .+   .+..++.+|+
T Consensus       356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni  435 (578)
T 4a82_A          356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI  435 (578)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHH
T ss_pred             ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHH
Confidence            57889999999999999999999999999999999999999999999876544332222222   22   2234666776


Q ss_pred             eeeeeecC-------------------CC-Ccc----ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFED-------------------CS-SPK----TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~~-------------------~~-~~~----~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+......                   .. ..+    .....||||||||++|||||+.+|++|||||   ||+++|+..
T Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDE---pts~LD~~~  512 (578)
T 4a82_A          436 LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE---ATSALDLES  512 (578)
T ss_dssp             GGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEES---TTTTCCHHH
T ss_pred             hcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC---ccccCCHHH
Confidence            55321100                   00 011    2234699999999999999999999999999   999999887


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+.++...+ +.|++++||+++.+. .||++++|+ .|+.
T Consensus       513 ~~~i~~~l~~~~~-~~t~i~itH~l~~~~-~~d~i~~l~-~G~i  553 (578)
T 4a82_A          513 ESIIQEALDVLSK-DRTTLIVAHRLSTIT-HADKIVVIE-NGHI  553 (578)
T ss_dssp             HHHHHHHHHHHTT-TSEEEEECSSGGGTT-TCSEEEEEE-TTEE
T ss_pred             HHHHHHHHHHHcC-CCEEEEEecCHHHHH-cCCEEEEEE-CCEE
Confidence             677888776544 578889999999985 599999998 6653

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.94  E-value=5.4e-30  Score=249.91  Aligned_cols=168  Identities=15%  Similarity=0.173  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhhh---hccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSEE---MDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~  138 (302)
                      .+++++++.+++|++++|+||||||||||+++++|+++|++|++.++|.+...........   .+.+.   +..++.+|
T Consensus       357 ~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en  436 (582)
T 3b60_A          357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN  436 (582)
T ss_dssp             CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred             ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHH
Confidence            3578899999999999999999999999999999999999999999997654332222222   12221   23366666


Q ss_pred             eeeee-eecCC----------C--------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         139 VGYSI-RFEDC----------S--------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       139 v~~~~-~~~~~----------~--------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      +.+.. .....          .              ........||||||||++|||||+.+|++|||||   ||+++|+
T Consensus       437 i~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDE---pts~LD~  513 (582)
T 3b60_A          437 IAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDE---ATSALDT  513 (582)
T ss_dssp             HHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEET---TTSSCCH
T ss_pred             HhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC---ccccCCH
Confidence            65532 00000          0              0011235799999999999999999999999999   9999998


Q ss_pred             HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .. ..+.+.+....+ +.|++++||+++.+. .||++++|+ .|+.
T Consensus       514 ~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~-~G~i  556 (582)
T 3b60_A          514 ESERAIQAALDELQK-NRTSLVIAHRLSTIE-QADEIVVVE-DGII  556 (582)
T ss_dssp             HHHHHHHHHHHHHHT-TSEEEEECSCGGGTT-TCSEEEEEE-TTEE
T ss_pred             HHHHHHHHHHHHHhC-CCEEEEEeccHHHHH-hCCEEEEEE-CCEE
Confidence            88 678888876654 789999999999875 799999998 6653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.94  E-value=1.3e-28  Score=237.43  Aligned_cols=164  Identities=13%  Similarity=0.115  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCE---------EEeecCchhhhHHHH---------HHHh
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAK---------AVACTQPRRVAAMSV---------AQRV  127 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~---------~i~~~~~~~~~~~~~---------~~~~  127 (302)
                      ++++++ .|++||+++|+||||||||||+++|+|+++|++|.+         .+.|...........         .+.+
T Consensus        37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~  115 (538)
T 1yqt_A           37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV  115 (538)
T ss_dssp             EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCG
T ss_pred             cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhh
Confidence            356777 899999999999999999999999999999999984         122222110000000         0000


Q ss_pred             hhhhc---cccccceee---------ee-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         128 SEEMD---CQLGQEVGY---------SI-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       128 ~~~~~---~~~~~~v~~---------~~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      .....   .++.+++..         .+ .+......++.+..|||||+||++||+||+.+|++|||||   ||++||+.
T Consensus       116 ~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDE---PTs~LD~~  192 (538)
T 1yqt_A          116 DLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDE---PSSYLDIR  192 (538)
T ss_dssp             GGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES---TTTTCCHH
T ss_pred             hhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC---CcccCCHH
Confidence            00000   011111100         00 0111123456778899999999999999999999999999   99999987


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      . ..+.++++.+.+.|.|||++|||++++..+||++++|+
T Consensus       193 ~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~  232 (538)
T 1yqt_A          193 QRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVY  232 (538)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence            7 67777777655458999999999999999999999997

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.6e-28  Score=237.55  Aligned_cols=158  Identities=15%  Similarity=0.148  Sum_probs=111.9

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEE-----------eecCchhhhHHHHHHHhh-----hhhc----
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV-----------ACTQPRRVAAMSVAQRVS-----EEMD----  132 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i-----------~~~~~~~~~~~~~~~~~~-----~~~~----  132 (302)
                      .+++|++++|+||||||||||+++|+|+++|++|.+..           .|..............+.     +...    
T Consensus        99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (608)
T 3j16_B           99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR  178 (608)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence            57899999999999999999999999999999998721           111110000000000000     0000    


Q ss_pred             ------cccccc-----------eeeee-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         133 ------CQLGQE-----------VGYSI-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       133 ------~~~~~~-----------v~~~~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                            .++.+.           +...+ .+......++.+..|||||+||++||+||+.+|++|||||   ||++||+.
T Consensus       179 ~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDE---Pts~LD~~  255 (608)
T 3j16_B          179 AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDE---PSSYLDVK  255 (608)
T ss_dssp             HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEEC---TTTTCCHH
T ss_pred             hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEEC---cccCCCHH
Confidence                  000000           00000 0111123456678899999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      . ..+.++++.+.+.|.|||++|||++++..+||++.+|+
T Consensus       256 ~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~  295 (608)
T 3j16_B          256 QRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIY  295 (608)
T ss_dssp             HHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            7 77888888877778999999999999999999999996

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.94  E-value=2.6e-28  Score=234.92  Aligned_cols=156  Identities=13%  Similarity=0.092  Sum_probs=110.5

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCCCE-----------EEeecCchhhhHHHHH---------HHhhhh---
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAK-----------AVACTQPRRVAAMSVA---------QRVSEE---  130 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~-----------~i~~~~~~~~~~~~~~---------~~~~~~---  130 (302)
                      +++|++++|+||||||||||+++|+|++.|++|.+           .+.|............         +.+...   
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF  101 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence            47999999999999999999999999999999987           2222221110000000         000000   


Q ss_pred             hcccccccee---------eee-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071         131 MDCQLGQEVG---------YSI-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK  199 (302)
Q Consensus       131 ~~~~~~~~v~---------~~~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~  199 (302)
                      ...++.+.+.         ..+ .+......++.+..|||||+||++||+||+.+|++|||||   ||++||+.. ..+.
T Consensus       102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDE---Pts~LD~~~~~~l~  178 (538)
T 3ozx_A          102 LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQ---PSSYLDVRERMNMA  178 (538)
T ss_dssp             CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES---TTTTCCHHHHHHHH
T ss_pred             ccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC---CcccCCHHHHHHHH
Confidence            0000000000         000 0011112356778899999999999999999999999999   999999877 7788


Q ss_pred             HHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         200 EVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       200 ~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      ++++.+.+ +.|||++|||++++..+||++.+|+
T Consensus       179 ~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~  211 (538)
T 3ozx_A          179 KAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIY  211 (538)
T ss_dssp             HHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEec
Confidence            88887766 8999999999999999999999997

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.94  E-value=1.6e-28  Score=239.31  Aligned_cols=164  Identities=15%  Similarity=0.140  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCE---------EEeecCchhhhHHHH---------HHHh
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAK---------AVACTQPRRVAAMSV---------AQRV  127 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~---------~i~~~~~~~~~~~~~---------~~~~  127 (302)
                      ++++++ .|++|++++|+||||||||||+++|+|+++|++|.+         .+.|...........         .+.+
T Consensus       107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~  185 (607)
T 3bk7_A          107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYV  185 (607)
T ss_dssp             EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCG
T ss_pred             eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechh
Confidence            456777 899999999999999999999999999999999984         122322111000000         0000


Q ss_pred             hhhh---ccccccceee---------ee-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         128 SEEM---DCQLGQEVGY---------SI-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       128 ~~~~---~~~~~~~v~~---------~~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      ....   ..++.+++..         .+ .+......++.+..|||||+||++||+||+.+|++|||||   ||++||+.
T Consensus       186 ~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDE---PTs~LD~~  262 (607)
T 3bk7_A          186 DLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDE---PSSYLDIR  262 (607)
T ss_dssp             GGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEC---TTTTCCHH
T ss_pred             hhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC---CcccCCHH
Confidence            0000   0011111110         00 0111123456778899999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      . ..+.++++.+.+.|.|||++|||++++..+||++.+|+
T Consensus       263 ~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~  302 (607)
T 3bk7_A          263 QRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVY  302 (607)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEEC
Confidence            7 67777777654458999999999999999999999997

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.94  E-value=1.3e-28  Score=237.48  Aligned_cols=159  Identities=13%  Similarity=0.105  Sum_probs=113.0

Q ss_pred             HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEe------ecCch---hhhHHHHHHHh-hhhhccccccce
Q psy2071          70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA------CTQPR---RVAAMSVAQRV-SEEMDCQLGQEV  139 (302)
Q Consensus        70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~------~~~~~---~~~~~~~~~~~-~~~~~~~~~~~v  139 (302)
                      +++.|++||+++|+||||||||||+++|+|+++|++|++.+.      -+++.   ........... .....  ..+.+
T Consensus       305 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~--~~~~~  382 (538)
T 1yqt_A          305 EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLN--SNFYK  382 (538)
T ss_dssp             CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHT--CHHHH
T ss_pred             CccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCC--HHHHH
Confidence            344568999999999999999999999999999999987541      11111   00111111100 00000  00000


Q ss_pred             eeee-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcC-CCcEEEEEEe
Q psy2071         140 GYSI-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRA-DLKLVIMSAT  216 (302)
Q Consensus       140 ~~~~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~t  216 (302)
                      ...+ .+......++.+..|||||+||++||++|+.+|++|||||   ||+++|+.. ..+.++++... +.|.|||++|
T Consensus       383 ~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDE---Pt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vs  459 (538)
T 1yqt_A          383 TELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDE---PSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE  459 (538)
T ss_dssp             HHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC---TTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             HHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC---CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            0000 1111123456788999999999999999999999999999   999999887 77778877653 3478999999


Q ss_pred             cCHHHHHhhccCCCeee
Q psy2071         217 LDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       217 hd~~~~~~~~d~~~~l~  233 (302)
                      ||++++..+||++++|+
T Consensus       460 Hd~~~~~~~~drv~vl~  476 (538)
T 1yqt_A          460 HDVLMIDYVSDRLMVFE  476 (538)
T ss_dssp             SCHHHHHHHCSEEEEEE
T ss_pred             CCHHHHHHhCCEEEEEe
Confidence            99999999999999997

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.94  E-value=1.9e-28  Score=238.78  Aligned_cols=159  Identities=14%  Similarity=0.118  Sum_probs=113.5

Q ss_pred             HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee------cCch---hhhHHHHHHHh-hhhh-ccccccc
Q psy2071          70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC------TQPR---RVAAMSVAQRV-SEEM-DCQLGQE  138 (302)
Q Consensus        70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~------~~~~---~~~~~~~~~~~-~~~~-~~~~~~~  138 (302)
                      +++.|.+||+++|+||||||||||+++|+|+++|++|++.+..      +++.   ........... .... .......
T Consensus       375 ~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~  454 (607)
T 3bk7_A          375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE  454 (607)
T ss_dssp             CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHH
Confidence            3445789999999999999999999999999999999875411      1110   00111110000 0000 0000000


Q ss_pred             eeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcC-CCcEEEEEEe
Q psy2071         139 VGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRA-DLKLVIMSAT  216 (302)
Q Consensus       139 v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~t  216 (302)
                      +.-  .+......++.+..|||||+||++||+||+.+|++|||||   ||+++|+.. ..+.++++... +.|.|+|++|
T Consensus       455 ~l~--~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDE---Pt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vs  529 (607)
T 3bk7_A          455 LLK--PLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDE---PSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE  529 (607)
T ss_dssp             THH--HHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC---TTTTCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHH--HcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC---CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            100  1111223467788999999999999999999999999999   999999887 67778877653 4578999999


Q ss_pred             cCHHHHHhhccCCCeee
Q psy2071         217 LDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       217 hd~~~~~~~~d~~~~l~  233 (302)
                      ||++++..+||++++|+
T Consensus       530 Hd~~~~~~~adrv~vl~  546 (607)
T 3bk7_A          530 HDVLMIDYVSDRLIVFE  546 (607)
T ss_dssp             SCHHHHHHHCSEEEEEE
T ss_pred             CCHHHHHHhCCEEEEEc
Confidence            99999999999999997

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.8e-28  Score=237.35  Aligned_cols=162  Identities=17%  Similarity=0.134  Sum_probs=113.6

Q ss_pred             HHHHHHHHHhC-----CEEEEEccCCCCccchhhhhhhcccccCCCE------EEeecCchhhhHHHHHHHhhhhhcc--
Q psy2071          67 RTEFMTLLAQN-----QCIVLVGETGSGKTTQIPQWCVEYSKSVGAK------AVACTQPRRVAAMSVAQRVSEEMDC--  133 (302)
Q Consensus        67 ~~~i~~~i~~g-----~i~~liG~nGsGKSTll~~i~g~~~~~~G~~------~i~~~~~~~~~~~~~~~~~~~~~~~--  133 (302)
                      .+++++.+.+|     |+++|+||||||||||+++|+|+++|++|..      .+..+.........+.+.+......  
T Consensus       363 l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~  442 (608)
T 3j16_B          363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQF  442 (608)
T ss_dssp             CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTT
T ss_pred             cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhccc
Confidence            45677788877     8899999999999999999999999999952      2211111000000011111000000  


Q ss_pred             ---ccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcC-CC
Q psy2071         134 ---QLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRA-DL  208 (302)
Q Consensus       134 ---~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~-~~  208 (302)
                         .....+.-  .+......++.+..|||||+||++||+||+.+|++|||||   ||+++|+.. ..+.+++++.. +.
T Consensus       443 ~~~~~~~~~l~--~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDE---PT~gLD~~~~~~i~~ll~~l~~~~  517 (608)
T 3j16_B          443 LNPQFQTDVVK--PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDE---PSAYLDSEQRIICSKVIRRFILHN  517 (608)
T ss_dssp             TSHHHHHHTHH--HHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECC---TTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHH--HcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHHHhC
Confidence               00000000  1111223466788999999999999999999999999999   999999877 66777777643 45


Q ss_pred             cEEEEEEecCHHHHHhhccCCCeee
Q psy2071         209 KLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       209 ~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      |.|||++|||++++..+||++++|+
T Consensus       518 g~tviivtHdl~~~~~~aDrvivl~  542 (608)
T 3j16_B          518 KKTAFIVEHDFIMATYLADKVIVFE  542 (608)
T ss_dssp             TCEEEEECSCHHHHHHHCSEEEECE
T ss_pred             CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            8899999999999999999999997

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.93  E-value=2.1e-27  Score=235.14  Aligned_cols=163  Identities=14%  Similarity=0.134  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchh---------------------hhhhhcccccCC-------CEEEeecCch-
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQI---------------------PQWCVEYSKSVG-------AKAVACTQPR-  116 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll---------------------~~i~g~~~~~~G-------~~~i~~~~~~-  116 (302)
                      +++++++.|++|++++|+||||||||||+                     +++.++..|+.|       .+.+.+.... 
T Consensus        33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~  112 (670)
T 3ux8_A           33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSR  112 (670)
T ss_dssp             TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC---
T ss_pred             ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhc
Confidence            57899999999999999999999999998                     778888888744       3444433211 


Q ss_pred             ----hhhHHHHH-----------------HHhhhhhccccccceeeeeeec--------------------------CC-
Q psy2071         117 ----RVAAMSVA-----------------QRVSEEMDCQLGQEVGYSIRFE--------------------------DC-  148 (302)
Q Consensus       117 ----~~~~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~--------------------------~~-  148 (302)
                          .++.+...                 ..+......++.+++.+.....                          .. 
T Consensus       113 ~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~  192 (670)
T 3ux8_A          113 NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLD  192 (670)
T ss_dssp             --CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTCT
T ss_pred             cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCc
Confidence                11111000                 0011112234555544321100                          00 


Q ss_pred             -CCccccccccCHHHHHHHhccccCCCCCc--EEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071         149 -SSPKTVLKYMTDGMLLREGMSDPMLENYQ--VILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ  224 (302)
Q Consensus       149 -~~~~~~~~~lS~G~~qr~~la~al~~~p~--lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~  224 (302)
                       ...++.+..|||||+||++|||||+.+|+  +|||||   ||+++|+.. ..+.++++..++.|.|||++|||++.+. 
T Consensus       193 ~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDE---PtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-  268 (670)
T 3ux8_A          193 YLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDE---PSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-  268 (670)
T ss_dssp             TCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEEC---TTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-
T ss_pred             hhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEEC---CccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-
Confidence             01346678899999999999999999998  999999   999999877 7788888776666899999999999765 


Q ss_pred             hccCCCee
Q psy2071         225 YFDNAPLM  232 (302)
Q Consensus       225 ~~d~~~~l  232 (302)
                      +||++++|
T Consensus       269 ~~d~ii~l  276 (670)
T 3ux8_A          269 AADYLIDI  276 (670)
T ss_dssp             HCSEEEEE
T ss_pred             hCCEEEEe
Confidence            69999999

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.92  E-value=1.2e-27  Score=251.55  Aligned_cols=167  Identities=17%  Similarity=0.255  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh---h---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS---E---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~v  139 (302)
                      +++++++.|++||.+||+|+||||||||+++|.+++.|++|.|.++|.+.+.+....+..+++   +   .+..++.+|+
T Consensus      1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI 1173 (1321)
T 4f4c_A         1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENI 1173 (1321)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHH
T ss_pred             cccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHH
Confidence            588999999999999999999999999999999999999999999999887766555554432   2   2355777887


Q ss_pred             eeeeeecCC----------------------CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         140 GYSIRFEDC----------------------SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       140 ~~~~~~~~~----------------------~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      .|...-...                      ...++.+    ..||||||||++|||||+.+|++|||||   ||+++|.
T Consensus      1174 ~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDE---aTSaLD~ 1250 (1321)
T 4f4c_A         1174 IYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDE---ATSALDT 1250 (1321)
T ss_dssp             SSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEES---CCCSTTS
T ss_pred             hccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeC---ccccCCH
Confidence            765321110                      0123333    3499999999999999999999999999   9999998


Q ss_pred             HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .. ..+.+.+++..+ +.|+|+++|.++.+. .||+|+||+ .|+.
T Consensus      1251 ~tE~~Iq~~l~~~~~-~~TvI~IAHRLsTi~-~aD~I~Vld-~G~I 1293 (1321)
T 4f4c_A         1251 ESEKVVQEALDRARE-GRTCIVIAHRLNTVM-NADCIAVVS-NGTI 1293 (1321)
T ss_dssp             HHHHHHHHHHTTTSS-SSEEEEECSSSSTTT-TCSEEEEES-SSSE
T ss_pred             HHHHHHHHHHHHHcC-CCEEEEeccCHHHHH-hCCEEEEEE-CCEE
Confidence            87 778887765433 679999999998875 599999999 6653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.92  E-value=1.7e-27  Score=249.89  Aligned_cols=167  Identities=17%  Similarity=0.210  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hhh---hccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SEE---MDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~v  139 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+.+..........+   .++   +..++.+|+
T Consensus       405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi  484 (1284)
T 3g5u_A          405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENI  484 (1284)
T ss_dssp             SEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHH
T ss_pred             ceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHH
Confidence            57899999999999999999999999999999999999999999999876554433333222   222   234666666


Q ss_pred             eeeeeecC-------------------C-CCccc----cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFED-------------------C-SSPKT----VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~~-------------------~-~~~~~----~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+......                   . ...++    ....||||||||++|||||+.+|++|||||   ||+++|+..
T Consensus       485 ~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDE---pts~LD~~~  561 (1284)
T 3g5u_A          485 RYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDE---ATSALDTES  561 (1284)
T ss_dssp             HHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEES---TTCSSCHHH
T ss_pred             hcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEEC---CCCCCCHHH
Confidence            54321000                   0 01112    234699999999999999999999999999   999999877


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+.++...+ +.|+|++||+++.+.. ||++++|+ .|+.
T Consensus       562 ~~~i~~~l~~~~~-~~t~i~itH~l~~i~~-~d~i~vl~-~G~i  602 (1284)
T 3g5u_A          562 EAVVQAALDKARE-GRTTIVIAHRLSTVRN-ADVIAGFD-GGVI  602 (1284)
T ss_dssp             HHHHHHHHHHHHT-TSEEEEECSCHHHHTT-CSEEEECS-SSCC
T ss_pred             HHHHHHHHHHHcC-CCEEEEEecCHHHHHc-CCEEEEEE-CCEE
Confidence             677777765443 7899999999999865 99999998 6654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.92  E-value=1.5e-27  Score=250.31  Aligned_cols=167  Identities=18%  Similarity=0.252  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~v  139 (302)
                      +++++++.|++||+++|+||||||||||+++|+|+++|++|++.++|.+.+..........   +.+   .+..++.+|+
T Consensus      1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi 1127 (1284)
T 3g5u_A         1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENI 1127 (1284)
T ss_dssp             SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHH
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHH
Confidence            5789999999999999999999999999999999999999999999987654433222222   222   2244666666


Q ss_pred             eeeeeecCC----------------------CCcccc----ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         140 GYSIRFEDC----------------------SSPKTV----LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       140 ~~~~~~~~~----------------------~~~~~~----~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      .+.......                      ...++.    ...||||||||++|||||+.+|++|||||   ||+++|+
T Consensus      1128 ~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDE---pTs~lD~ 1204 (1284)
T 3g5u_A         1128 AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDE---ATSALDT 1204 (1284)
T ss_dssp             TCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEES---CSSSCCH
T ss_pred             hccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCH
Confidence            553211000                      011222    24699999999999999999999999999   9999998


Q ss_pred             HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .. ..+.+.++...+ |.|+|++|||++.+. .||++++|+ .|+.
T Consensus      1205 ~~~~~i~~~l~~~~~-~~tvi~isH~l~~i~-~~dri~vl~-~G~i 1247 (1284)
T 3g5u_A         1205 ESEKVVQEALDKARE-GRTCIVIAHRLSTIQ-NADLIVVIQ-NGKV 1247 (1284)
T ss_dssp             HHHHHHHHHHHHHSS-SSCEEEECSCTTGGG-SCSEEEEEE-TBEE
T ss_pred             HHHHHHHHHHHHhCC-CCEEEEEecCHHHHH-cCCEEEEEE-CCEE
Confidence            87 778888876543 789999999999985 599999998 6653

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=99.91  E-value=4.2e-24  Score=213.96  Aligned_cols=212  Identities=65%  Similarity=1.001  Sum_probs=181.2

Q ss_pred             CCCCCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCchh
Q psy2071          39 VNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQPRR  117 (302)
Q Consensus        39 ~~~~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~~~  117 (302)
                      .+||...++.+++.++...|..+|++...+.|...+..|++++|+|||||||||+++++++...+..| ...+....|++
T Consensus        71 ~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r  150 (773)
T 2xau_A           71 INPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRR  150 (773)
T ss_dssp             BCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCH
T ss_pred             CCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchH
Confidence            56788899999999999999999999999999999999999999999999999999999876655542 23344567788


Q ss_pred             hhHHHHHHHhhhhhccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHH
Q psy2071         118 VAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGV  197 (302)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~  197 (302)
                      ..+..++.++...++..++..+|+.+++......++.+..+|.|+++|..++++++.++++||+||+|++....|.....
T Consensus       151 ~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~  230 (773)
T 2xau_A          151 VAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGL  230 (773)
T ss_dssp             HHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHH
Confidence            77778888888888888888999887776655567788999999999999999999999999999988766666666677


Q ss_pred             HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcCCccceeecCCCC
Q psy2071         198 LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPP  250 (302)
Q Consensus       198 l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~~~  250 (302)
                      +..+...+.+..++++++||+.+.+.++++...++.++|+.+|++++|.+.+.
T Consensus       231 l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~  283 (773)
T 2xau_A          231 LKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQ  283 (773)
T ss_dssp             HHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCC
T ss_pred             HHHHHHhCCCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCc
Confidence            88887766677788899999999999999999999999999999999987644

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.91  E-value=2e-26  Score=232.56  Aligned_cols=79  Identities=18%  Similarity=0.172  Sum_probs=69.5

Q ss_pred             ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCe
Q psy2071         153 TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPL  231 (302)
Q Consensus       153 ~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~  231 (302)
                      +.+..|||||+||++||++|+.+|++|||||   ||+++|+.. ..+.++++..   +.+||++|||++++..+||++++
T Consensus       897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDE---PT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~v~~l~DrViv  970 (986)
T 2iw3_A          897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDE---PTNYLDRDSLGALSKALKEF---EGGVIIITHSAEFTKNLTEEVWA  970 (986)
T ss_dssp             SCGGGCCHHHHHHHHHHHHHTTCCSEEEEEC---GGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHHHTTTCCEEEC
T ss_pred             CCccccCHHHHHHHHHHHHHHhCCCEEEEEC---CccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHhCCEEEE
Confidence            4567899999999999999999999999999   999999877 6677776554   45899999999999999999999


Q ss_pred             eeecCcC
Q psy2071         232 MNVPGRT  238 (302)
Q Consensus       232 l~i~g~~  238 (302)
                      |+ .|+.
T Consensus       971 L~-~G~I  976 (986)
T 2iw3_A          971 VK-DGRM  976 (986)
T ss_dssp             CB-TTBC
T ss_pred             EE-CCEE
Confidence            98 7764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.91  E-value=1.4e-26  Score=243.56  Aligned_cols=167  Identities=18%  Similarity=0.240  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~  138 (302)
                      .+++++++.|++|+.++|+||+|||||||+++|+|++.|++|.+.++|.+.+..........+   .+   .++.++.+|
T Consensus       432 ~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eN  511 (1321)
T 4f4c_A          432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEEN  511 (1321)
T ss_dssp             CSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHH
T ss_pred             ceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHH
Confidence            357899999999999999999999999999999999999999999999887766554444433   22   235577777


Q ss_pred             eeeeeeecC--------------------CCCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         139 VGYSIRFED--------------------CSSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       139 v~~~~~~~~--------------------~~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      +.|......                    ....+|.+    ..||||||||++||||++.+|+++||||   ||+++|..
T Consensus       512 I~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE---~tSaLD~~  588 (1321)
T 4f4c_A          512 ISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDE---ATSALDAE  588 (1321)
T ss_dssp             HHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEES---TTTTSCTT
T ss_pred             HhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEec---ccccCCHH
Confidence            766431100                    00123333    3499999999999999999999999999   99999976


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      . ..+.+.+....+ +.|+|++||.+..+ ..||+|++|+ .|+
T Consensus       589 te~~i~~~l~~~~~-~~T~iiiaHrls~i-~~aD~Iivl~-~G~  629 (1321)
T 4f4c_A          589 SEGIVQQALDKAAK-GRTTIIIAHRLSTI-RNADLIISCK-NGQ  629 (1321)
T ss_dssp             THHHHHHHHHHHHT-TSEEEEECSCTTTT-TTCSEEEEEE-TTE
T ss_pred             HHHHHHHHHHHHhC-CCEEEEEcccHHHH-HhCCEEEEee-CCe
Confidence            6 666676665433 67888899999877 5799999998 554

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.90  E-value=6.8e-26  Score=224.37  Aligned_cols=77  Identities=13%  Similarity=0.095  Sum_probs=68.2

Q ss_pred             cccccccCHHHHHHHhccccCCCCC---cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         152 KTVLKYMTDGMLLREGMSDPMLENY---QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       152 ~~~~~~lS~G~~qr~~la~al~~~p---~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                      ++.+..|||||+||++|||||+.+|   ++|||||   ||+++|+.. ..+.++++...+.|.|||++|||++.+ .+||
T Consensus       538 ~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDE---Pt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~-~~~d  613 (670)
T 3ux8_A          538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDE---PTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTAD  613 (670)
T ss_dssp             TCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEES---TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCS
T ss_pred             cCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeC---CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH-HhCC
Confidence            4567889999999999999999886   5999999   999999887 778888877665689999999999987 5799


Q ss_pred             CCCee
Q psy2071         228 NAPLM  232 (302)
Q Consensus       228 ~~~~l  232 (302)
                      ++++|
T Consensus       614 ~i~~l  618 (670)
T 3ux8_A          614 YIIDL  618 (670)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99999

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.89  E-value=6.1e-25  Score=221.77  Aligned_cols=165  Identities=13%  Similarity=0.070  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhh-ccc--ccCC--CEEEeecCc-hhhhHHHHHHHhhhhhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCV-EYS--KSVG--AKAVACTQP-RRVAAMSVAQRVSEEMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g-~~~--~~~G--~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  138 (302)
                      .+++++++.|++|++++|+||||||||||+++|+| .+.  +..+  .+.+..+++ .......+...+...... ..+.
T Consensus       449 ~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~-~~~~  527 (986)
T 2iw3_A          449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVG-TKEA  527 (986)
T ss_dssp             EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSS-CHHH
T ss_pred             EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcC-HHHH
Confidence            35788999999999999999999999999999984 220  0001  111111111 000001111111110000 0001


Q ss_pred             eeeeeeecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEE
Q psy2071         139 VGYSIRFEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSA  215 (302)
Q Consensus       139 v~~~~~~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~  215 (302)
                      +...+.....  ...++.+..|||||+||++||++|+.+|++|||||   ||+++|+.. ..+.+++..   .|.|+|++
T Consensus       528 v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDE---PTs~LD~~~~~~l~~~L~~---~g~tvIiv  601 (986)
T 2iw3_A          528 IKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDE---PTNHLDTVNVAWLVNYLNT---CGITSITI  601 (986)
T ss_dssp             HHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEES---TTTTCCHHHHHHHHHHHHH---SCSEEEEE
T ss_pred             HHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEC---CccCCCHHHHHHHHHHHHh---CCCEEEEE
Confidence            1111111111  12356778999999999999999999999999999   999999887 778888877   37899999


Q ss_pred             ecCHHHHHhhccCCCeeeecCc
Q psy2071         216 TLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       216 thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      |||++++..+||++++|+ .|+
T Consensus       602 SHdl~~l~~~adrii~L~-~G~  622 (986)
T 2iw3_A          602 SHDSVFLDNVCEYIINYE-GLK  622 (986)
T ss_dssp             CSCHHHHHHHCSEEEEEE-TTE
T ss_pred             ECCHHHHHHhCCEEEEEE-CCe
Confidence            999999999999999998 444

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.89  E-value=1.7e-25  Score=184.83  Aligned_cols=135  Identities=13%  Similarity=0.029  Sum_probs=89.9

Q ss_pred             HHHHHHhCCEEEEEccCCCCccchhh------------hhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccccc
Q psy2071          70 FMTLLAQNQCIVLVGETGSGKTTQIP------------QWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQ  137 (302)
Q Consensus        70 i~~~i~~g~i~~liG~nGsGKSTll~------------~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (302)
                      +++.+++|++++|+||||||||||++            .+.|+..++.|...+.+.....     .......      ..
T Consensus         2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~------~~   70 (171)
T 4gp7_A            2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDV-----LHYIVSK------RL   70 (171)
T ss_dssp             EEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHH-----HHHHHHH------HH
T ss_pred             ccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHH-----HHHHHHH------HH
Confidence            35678899999999999999999999            5555555554433222110000     0000000      00


Q ss_pred             ceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH----------------H-HHHHH
Q psy2071         138 EVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL----------------M-GVLKE  200 (302)
Q Consensus       138 ~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~----------------~-~~l~~  200 (302)
                      ..++.....       .....|+|++||++||++++.+|++|+|||   |++++|+.                . ..+.+
T Consensus        71 ~~g~~~~~~-------~~~~~s~g~~qrv~iAral~~~p~~lllDE---Pt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~  140 (171)
T 4gp7_A           71 QLGKLTVVD-------ATNVQESARKPLIEMAKDYHCFPVAVVFNL---PEKVCQERNKNRTDRQVEEYVIRKHTQQMKK  140 (171)
T ss_dssp             HTTCCEEEE-------SCCCSHHHHHHHHHHHHHTTCEEEEEEECC---CHHHHHHHHHTCSSCCCCHHHHHHHHHHHHH
T ss_pred             hCCCeEEEE-------CCCCCHHHHHHHHHHHHHcCCcEEEEEEeC---CHHHHHHHHhcccCCCCCHHHHHHHHHHhhh
Confidence            112222111       112349999999999999999999999999   99999987                3 45555


Q ss_pred             HHHHcCCCcEEEEEEecCHHHHHhh
Q psy2071         201 VIKQRADLKLVIMSATLDAGKFQQY  225 (302)
Q Consensus       201 ll~~~~~~~~~ii~~thd~~~~~~~  225 (302)
                      +++...+.|.|+|++|||++++..+
T Consensus       141 ~l~~l~~~g~tvi~vtH~~~~~~~~  165 (171)
T 4gp7_A          141 SIKGLQREGFRYVYILNSPEEVEEV  165 (171)
T ss_dssp             HSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred             hhhhHHhcCCcEEEEeCCHHHhhhh
Confidence            5554444489999999999998754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.88  E-value=2.1e-24  Score=183.72  Aligned_cols=138  Identities=14%  Similarity=0.065  Sum_probs=82.8

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccce-eeee----eecC
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEV-GYSI----RFED  147 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~----~~~~  147 (302)
                      .|++|++++|+||||||||||+++|+|+ +|++|.+..................+.+..    .+++ .+..    ....
T Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~----~enl~~~~~~~~~~~~~   92 (208)
T 3b85_A           18 AIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL----NEKIDPYLRPLHDALRD   92 (208)
T ss_dssp             HHHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC----------CTTTHHHHHHHTT
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH----HHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999999 999998843111000000000000111110    1111 1100    0000


Q ss_pred             ---CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071         148 ---CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQ  224 (302)
Q Consensus       148 ---~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~  224 (302)
                         .......+.. ..||+||++||+||+.+|++|||||   ||++   ....+.+++... +.+.||| +|||++.+..
T Consensus        93 ~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDE---Pts~---~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~  163 (208)
T 3b85_A           93 MVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDE---AQNT---TPAQMKMFLTRL-GFGSKMV-VTGDITQVDL  163 (208)
T ss_dssp             TSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECS---GGGC---CHHHHHHHHTTB-CTTCEEE-EEEC------
T ss_pred             hccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeC---Cccc---cHHHHHHHHHHh-cCCCEEE-EECCHHHHhC
Confidence               0001111222 3399999999999999999999999   9999   336677777776 5588999 9999987764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.3e-24  Score=205.33  Aligned_cols=161  Identities=12%  Similarity=0.029  Sum_probs=113.4

Q ss_pred             HHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-C-EEEeecCchhhhHHHHHHHhhh---hhccccccceeee
Q psy2071          68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-A-KAVACTQPRRVAAMSVAQRVSE---EMDCQLGQEVGYS  142 (302)
Q Consensus        68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~-~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~  142 (302)
                      .++++.+++|++++|+||||||||||+++|+|++.|++| . +.+++...+.+...  .+....   ....++.+++ +.
T Consensus       129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~v--pq~~~l~~~~~~~tv~eni-~~  205 (460)
T 2npi_A          129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTV--PGCISATPISDILDAQLPT-WG  205 (460)
T ss_dssp             HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSC--SSCCEEEECCSCCCTTCTT-CS
T ss_pred             hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeee--ccchhhcccccccchhhhh-cc
Confidence            479999999999999999999999999999999999999 8 99987321112111  111100   0011222222 21


Q ss_pred             ee----------------ecCCCCccccccccCHHHHHHHhcccc--CCCCCcE----EEEcCCCCCCcchHHHHHHHHH
Q psy2071         143 IR----------------FEDCSSPKTVLKYMTDGMLLREGMSDP--MLENYQV----ILLDEAHERTLATDILMGVLKE  200 (302)
Q Consensus       143 ~~----------------~~~~~~~~~~~~~lS~G~~qr~~la~a--l~~~p~l----liLDE~~~p~~~lD~~~~~l~~  200 (302)
                      ..                ......... ...||+||+||+++|++  |+.+|++    |||||.  |++++|+....+.+
T Consensus       206 ~~~~~~~~~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp--Pts~LD~~~~~l~~  282 (460)
T 2npi_A          206 QSLTSGATLLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP--SISQLDENLAELHH  282 (460)
T ss_dssp             CBCBSSCCSSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC--CGGGSCSSCHHHHH
T ss_pred             cccccCcchHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC--cccccChhHHHHHH
Confidence            11                111111111 56799999999999999  9999999    999994  58889976556666


Q ss_pred             HHHHcCCCcEEEEEEecCHH------HHHhhccC-----CCeeeecCc
Q psy2071         201 VIKQRADLKLVIMSATLDAG------KFQQYFDN-----APLMNVPGR  237 (302)
Q Consensus       201 ll~~~~~~~~~ii~~thd~~------~~~~~~d~-----~~~l~i~g~  237 (302)
                      +++..   +.+++++||+.+      ++..+||+     +++|+-.|+
T Consensus       283 l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~  327 (460)
T 2npi_A          283 IIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDG  327 (460)
T ss_dssp             HHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTT
T ss_pred             HHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCc
Confidence            66553   667888899877      88899999     888863343

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.86  E-value=8.1e-24  Score=211.64  Aligned_cols=78  Identities=13%  Similarity=0.035  Sum_probs=69.9

Q ss_pred             cccccccCHHHHHHHhccccCCCC---CcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         152 KTVLKYMTDGMLLREGMSDPMLEN---YQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       152 ~~~~~~lS~G~~qr~~la~al~~~---p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                      ++.+..|||||+||++||++|+.+   |++|||||   ||+++|+.. ..+.+++..+.+.|.|||++|||++++ .+||
T Consensus       725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDE---PTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aD  800 (842)
T 2vf7_A          725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDE---PTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASD  800 (842)
T ss_dssp             TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEEC---TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCS
T ss_pred             cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCC
Confidence            456778999999999999999996   79999999   999999877 778888887666689999999999999 7899


Q ss_pred             CCCeee
Q psy2071         228 NAPLMN  233 (302)
Q Consensus       228 ~~~~l~  233 (302)
                      ++++|.
T Consensus       801 rii~L~  806 (842)
T 2vf7_A          801 WVLDIG  806 (842)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999994

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.86  E-value=7.8e-23  Score=169.92  Aligned_cols=139  Identities=12%  Similarity=0.033  Sum_probs=89.4

Q ss_pred             EEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh---HHHHHHHhhhhhccccccceeeeeeecCCCCccccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA---AMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVL  155 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  155 (302)
                      .++|+||||||||||+++|+|++.     +.+.|.......   .......+.+..  +..+++.....+......+...
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   74 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT--EGKKKIFSSKFFTSKKLVGSYG   74 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET--TCCEEEEEETTCCCSSEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC--cHHHHHHHhhcCCccccccccc
Confidence            589999999999999999999985     233332211100   000000011100  1111110000000001234556


Q ss_pred             cccCHHHHHHHhcccc-----CCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEe---cCHHHHHhhc
Q psy2071         156 KYMTDGMLLREGMSDP-----MLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSAT---LDAGKFQQYF  226 (302)
Q Consensus       156 ~~lS~G~~qr~~la~a-----l~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~t---hd~~~~~~~~  226 (302)
                      ..||+||+||+++|++     ++.+|++|||||++ |++++|+.. ..+.+++..   .+.+++++|   ||.+.+..+|
T Consensus        75 ~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEig-p~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~  150 (178)
T 1ye8_A           75 VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIG-KMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLVKEIR  150 (178)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCS-TTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHHHHHH
T ss_pred             cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCC-CcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHHHHHH
Confidence            7799999999999996     99999999999987 999999877 677777654   355555566   6999999999


Q ss_pred             cC
Q psy2071         227 DN  228 (302)
Q Consensus       227 d~  228 (302)
                      ++
T Consensus       151 ~r  152 (178)
T 1ye8_A          151 RL  152 (178)
T ss_dssp             TC
T ss_pred             hc
Confidence            97

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.85  E-value=3.3e-22  Score=187.06  Aligned_cols=71  Identities=13%  Similarity=-0.009  Sum_probs=64.0

Q ss_pred             cCHHHHHHHhccccCCCCC--cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         158 MTDGMLLREGMSDPMLENY--QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       158 lS~G~~qr~~la~al~~~p--~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      +||||+||++||++|+.+|  ++|||||   |++++|+.. ..+.++++... .+.+||++||+++.+ .+||++++|.
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDE---pt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~-~~~d~i~~l~  369 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDE---VDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIA-ARAHHHYKVE  369 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESS---TTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHH-TTCSEEEEEE
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH-hhcCeEEEEE
Confidence            5999999999999999999  9999999   999999887 78888888776 478999999999765 6899999994

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.84  E-value=2.1e-23  Score=210.25  Aligned_cols=77  Identities=14%  Similarity=0.129  Sum_probs=67.4

Q ss_pred             ccccccCHHHHHHHhccccCCCCC---cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccC
Q psy2071         153 TVLKYMTDGMLLREGMSDPMLENY---QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDN  228 (302)
Q Consensus       153 ~~~~~lS~G~~qr~~la~al~~~p---~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~  228 (302)
                      .....|||||+||++||++|+.+|   ++|||||   ||++||+.. ..+.++++.+.+.|.|||++|||++.+. .||+
T Consensus       801 q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDE---PTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~-~ADr  876 (916)
T 3pih_A          801 QPATTLSGGEAQRIKLASELRKRDTGRTLYILDE---PTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIK-NADH  876 (916)
T ss_dssp             CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEES---TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSE
T ss_pred             CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCE
Confidence            445679999999999999999875   7999999   999999887 7788888876666899999999999875 5999


Q ss_pred             CCeee
Q psy2071         229 APLMN  233 (302)
Q Consensus       229 ~~~l~  233 (302)
                      +++|.
T Consensus       877 IivLg  881 (916)
T 3pih_A          877 IIDLG  881 (916)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99994

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.84  E-value=8.1e-23  Score=205.07  Aligned_cols=78  Identities=13%  Similarity=0.095  Sum_probs=68.8

Q ss_pred             cccccccCHHHHHHHhccccCCCCC---cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         152 KTVLKYMTDGMLLREGMSDPMLENY---QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       152 ~~~~~~lS~G~~qr~~la~al~~~p---~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                      ++.+..|||||+||++||++|+.+|   ++|||||   ||+++|+.. ..+.+++..+.+.|.|||++|||++++ .+||
T Consensus       840 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDE---PTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aD  915 (972)
T 2r6f_A          840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDE---PTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTAD  915 (972)
T ss_dssp             TCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEEC---TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCS
T ss_pred             cCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCC
Confidence            4566789999999999999999875   9999999   999999887 778888877666689999999999987 5899


Q ss_pred             CCCeee
Q psy2071         228 NAPLMN  233 (302)
Q Consensus       228 ~~~~l~  233 (302)
                      ++++|.
T Consensus       916 rIivL~  921 (972)
T 2r6f_A          916 YIIDLG  921 (972)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            999994

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.82  E-value=3.4e-21  Score=175.06  Aligned_cols=132  Identities=13%  Similarity=0.041  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +.+++++.+++|++++|+||||||||||+++|+|+++|+.|.+.+.+.......              .....+++..  
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~--------------~~~~~i~~~~--  223 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK--------------HHKNYTQLFF--  223 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS--------------SCSSEEEEEC--
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc--------------cchhEEEEEe--
Confidence            678999999999999999999999999999999999999999999875311100              0111222211  


Q ss_pred             cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhh
Q psy2071         146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQY  225 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~  225 (302)
                                   .+||+||++|++||..+|++|||||   |++.  ..    .++++.....+.+++++||+.+ +...
T Consensus       224 -------------ggg~~~r~~la~aL~~~p~ilildE---~~~~--e~----~~~l~~~~~g~~tvi~t~H~~~-~~~~  280 (330)
T 2pt7_A          224 -------------GGNITSADCLKSCLRMRPDRIILGE---LRSS--EA----YDFYNVLCSGHKGTLTTLHAGS-SEEA  280 (330)
T ss_dssp             -------------BTTBCHHHHHHHHTTSCCSEEEECC---CCST--HH----HHHHHHHHTTCCCEEEEEECSS-HHHH
T ss_pred             -------------CCChhHHHHHHHHhhhCCCEEEEcC---CChH--HH----HHHHHHHhcCCCEEEEEEcccH-HHHH
Confidence                         0899999999999999999999999   8872  22    2333333333457888999988 8889


Q ss_pred             ccCCCeeeecCc
Q psy2071         226 FDNAPLMNVPGR  237 (302)
Q Consensus       226 ~d~~~~l~i~g~  237 (302)
                      ||++.+|. .|.
T Consensus       281 ~dri~~l~-~g~  291 (330)
T 2pt7_A          281 FIRLANMS-SSN  291 (330)
T ss_dssp             HHHHHHHH-HTS
T ss_pred             hhhheehh-cCC
Confidence            99999987 443

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.81  E-value=1e-22  Score=189.50  Aligned_cols=159  Identities=10%  Similarity=0.022  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHhCC--------------------EEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHH
Q psy2071          65 EYRTEFMTLLAQNQ--------------------CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA  124 (302)
Q Consensus        65 ~~~~~i~~~i~~g~--------------------i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~  124 (302)
                      .++++|++.|++|+                    +++|+|+||||||||+++|+|+.+|++|.+.+.+.+..+....  .
T Consensus        37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v--~  114 (413)
T 1tq4_A           37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP--Y  114 (413)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE--E
T ss_pred             HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEe--c
Confidence            36899999999999                    9999999999999999999999999999998877654321111  0


Q ss_pred             HHhhhhhccccccceeeeeeec---------CCCCccccccccCHH--HHHHHhccccCCC----------CCcEEEEcC
Q psy2071         125 QRVSEEMDCQLGQEVGYSIRFE---------DCSSPKTVLKYMTDG--MLLREGMSDPMLE----------NYQVILLDE  183 (302)
Q Consensus       125 ~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~~~~lS~G--~~qr~~la~al~~----------~p~lliLDE  183 (302)
                      +. ......++.++.++.....         .....+..+ .+|+|  |+||+++|++|+.          +|++++|||
T Consensus       115 q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~-~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDE  192 (413)
T 1tq4_A          115 KH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFI-IISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNE  192 (413)
T ss_dssp             EC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEE-EEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHH
T ss_pred             cc-cccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeE-EeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCc
Confidence            10 1112334445554432100         000112222 39999  9999999999999          999999999


Q ss_pred             CCCCCcchHHHH-HHHHHHHHHc---------CCCcEEEEEEecCHHH--HHhhccCCC
Q psy2071         184 AHERTLATDILM-GVLKEVIKQR---------ADLKLVIMSATLDAGK--FQQYFDNAP  230 (302)
Q Consensus       184 ~~~p~~~lD~~~-~~l~~ll~~~---------~~~~~~ii~~thd~~~--~~~~~d~~~  230 (302)
                         |++++|+.. ..+.++++..         .+...+++++||+++.  +.++||++.
T Consensus       193 ---PtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~  248 (413)
T 1tq4_A          193 ---ADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI  248 (413)
T ss_dssp             ---HTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred             ---ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence               999999655 4444444432         1234678888999887  888888764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.80  E-value=2.1e-20  Score=172.09  Aligned_cols=82  Identities=20%  Similarity=0.162  Sum_probs=72.5

Q ss_pred             cccccccCHHHHHHHhccccCC------CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071         152 KTVLKYMTDGMLLREGMSDPML------ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ  224 (302)
Q Consensus       152 ~~~~~~lS~G~~qr~~la~al~------~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~  224 (302)
                      +..+..|||||+||++||+||+      .+|++|||||   ||+++|+.. ..+.+++....+.|.||+++|||++. ..
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDE---pt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~  349 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDE---GFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SE  349 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEES---CCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HT
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeC---CCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HH
Confidence            4567789999999999999998      7999999999   999999887 77888888776678999999999998 67


Q ss_pred             hccCCCeeeecCcC
Q psy2071         225 YFDNAPLMNVPGRT  238 (302)
Q Consensus       225 ~~d~~~~l~i~g~~  238 (302)
                      +||++++|+ .|+.
T Consensus       350 ~~d~~~~l~-~G~i  362 (365)
T 3qf7_A          350 AFDRKLRIT-GGVV  362 (365)
T ss_dssp             TCSCEEEEE-TTEE
T ss_pred             hCCEEEEEE-CCEE
Confidence            899999998 6653

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=99.80  E-value=8.4e-19  Score=151.72  Aligned_cols=182  Identities=35%  Similarity=0.618  Sum_probs=142.1

Q ss_pred             hhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC---CEEEeecCchhhhHHHHHHH
Q psy2071          50 RYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG---AKAVACTQPRRVAAMSVAQR  126 (302)
Q Consensus        50 ~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G---~~~i~~~~~~~~~~~~~~~~  126 (302)
                      .+.++...+..+|.+.+...+...+.+|+.+++.|||||||||++.+++.......|   .+.+....|.+..+..+..+
T Consensus        49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~  128 (235)
T 3llm_A           49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAER  128 (235)
T ss_dssp             HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHH
Confidence            344566777889999999999999999999999999999999998877654322222   33455566777777777788


Q ss_pred             hhhhhccccccceeeeeeecCCCC-ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHc
Q psy2071         127 VSEEMDCQLGQEVGYSIRFEDCSS-PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQR  205 (302)
Q Consensus       127 ~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~  205 (302)
                      +.......++..+++..++..... .+..+...|.|+..+....  .+.+.++||+||+|+.....|.....++.++...
T Consensus       129 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~  206 (235)
T 3llm_A          129 VAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY  206 (235)
T ss_dssp             HHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC
Confidence            877777777788888776554332 3455677899998887544  5899999999999986666666667788888777


Q ss_pred             CCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         206 ADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       206 ~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      .+..+++++||.+.+.+.+|+++.++++
T Consensus       207 ~~~~~il~SAT~~~~~~~~~~~~~pvi~  234 (235)
T 3llm_A          207 PEVRIVLMSATIDTSMFCEYFFNCPIIE  234 (235)
T ss_dssp             TTSEEEEEECSSCCHHHHHHTTSCCCEE
T ss_pred             CCCeEEEEecCCCHHHHHHHcCCCCEEe
Confidence            7778999999999999999999988876

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.78  E-value=1.2e-19  Score=164.36  Aligned_cols=73  Identities=15%  Similarity=0.117  Sum_probs=62.1

Q ss_pred             cccccccCHHHHHHHhccccCC----CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhc
Q psy2071         152 KTVLKYMTDGMLLREGMSDPML----ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYF  226 (302)
Q Consensus       152 ~~~~~~lS~G~~qr~~la~al~----~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~  226 (302)
                      +..+..||+||+||++||++|+    .+|++|||||   |++++|+.. ..+.+++....+ +.++|++||+. .+..+|
T Consensus       214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDE---p~~~LD~~~~~~l~~~l~~~~~-~~~vi~~tH~~-~~~~~~  288 (322)
T 1e69_A          214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDE---VDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK-IVMEAA  288 (322)
T ss_dssp             CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEES---CCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT-TGGGGC
T ss_pred             cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeC---CCCCCCHHHHHHHHHHHHHhcC-CCeEEEEECCH-HHHhhC
Confidence            3456789999999999999986    6899999999   999999877 778888877643 77899999996 466789


Q ss_pred             cCC
Q psy2071         227 DNA  229 (302)
Q Consensus       227 d~~  229 (302)
                      |++
T Consensus       289 d~~  291 (322)
T 1e69_A          289 DLL  291 (322)
T ss_dssp             SEE
T ss_pred             ceE
Confidence            987

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.77  E-value=4.7e-21  Score=162.80  Aligned_cols=161  Identities=12%  Similarity=0.022  Sum_probs=90.2

Q ss_pred             HHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch-----hhhHHHHHHHhhhhhccccccceeeeeeec
Q psy2071          72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR-----RVAAMSVAQRVSEEMDCQLGQEVGYSIRFE  146 (302)
Q Consensus        72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  146 (302)
                      ..|++|++++|+||||||||||+++|+|+++...+.+.+.+..++     .++...+....  ....++.+++.......
T Consensus        15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~--~~~~~~~~~l~~~~~~~   92 (207)
T 1znw_A           15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTR--FQQLIDQGELLEWAEIH   92 (207)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHH--HHHHHHTTCEEEEEEEG
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHH--HHHHHhcCCceeehhhc
Confidence            489999999999999999999999999998522222212111111     11111111010  11112222222111110


Q ss_pred             C------CCC--ccccc---------cccCHHHHHHHhccc---cCCCCCcEEEEcCCCCCCcch----HHHH-HHHHHH
Q psy2071         147 D------CSS--PKTVL---------KYMTDGMLLREGMSD---PMLENYQVILLDEAHERTLAT----DILM-GVLKEV  201 (302)
Q Consensus       147 ~------~~~--~~~~~---------~~lS~G~~qr~~la~---al~~~p~lliLDE~~~p~~~l----D~~~-~~l~~l  201 (302)
                      .      ...  ....+         -.+.+.+.++-....   +|+.+|++++|||   |+.++    |+.. ..+.++
T Consensus        93 ~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDe---p~~~l~~~~d~~~~~~l~~~  169 (207)
T 1znw_A           93 GGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQA---RLIGRGTETADVIQRRLDTA  169 (207)
T ss_dssp             GGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHH---HHHTTSCSCHHHHHHHHHHH
T ss_pred             CchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHH---HHHhcCCCCHHHHHHHHHHH
Confidence            0      000  00000         224455555544444   7899999999999   98887    6655 567777


Q ss_pred             HHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         202 IKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       202 l~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +.+.. +.+.+++++|||++++..+||++++|..+|+
T Consensus       170 l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~p~~  206 (207)
T 1znw_A          170 RIELAAQGDFDKVVVNRRLESACAELVSLLVGTAPGS  206 (207)
T ss_dssp             HHHHHGGGGSSEEEECSSHHHHHHHHHHHHC------
T ss_pred             HHHHhhhccCcEEEECCCHHHHHHHHHHHHHhccCCC
Confidence            66553 4578999999999999999999999875554

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.71  E-value=1.7e-17  Score=151.22  Aligned_cols=79  Identities=16%  Similarity=0.189  Sum_probs=67.4

Q ss_pred             cccccccCHHHHH------HHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071         152 KTVLKYMTDGMLL------REGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ  224 (302)
Q Consensus       152 ~~~~~~lS~G~~q------r~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~  224 (302)
                      +..+..||+||+|      |+++|++++.+|++|||||   |++++|+.. ..+.+++......+.+|+++|||.+ +..
T Consensus       243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDE---p~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~  318 (339)
T 3qkt_A          243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDE---PTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKD  318 (339)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEEC---CCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGG
T ss_pred             cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHH
Confidence            4567889999999      6788899999999999999   999999887 7778888776555779999999954 678


Q ss_pred             hccCCCeeee
Q psy2071         225 YFDNAPLMNV  234 (302)
Q Consensus       225 ~~d~~~~l~i  234 (302)
                      +||++++|..
T Consensus       319 ~~d~~~~l~~  328 (339)
T 3qkt_A          319 AADHVIRISL  328 (339)
T ss_dssp             GCSEEEEEEE
T ss_pred             hCCEEEEEEe
Confidence            9999999983

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.71  E-value=1.6e-18  Score=155.44  Aligned_cols=157  Identities=14%  Similarity=0.124  Sum_probs=102.9

Q ss_pred             HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---------Hhhhhh-----cccc
Q psy2071          70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---------RVSEEM-----DCQL  135 (302)
Q Consensus        70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---------~~~~~~-----~~~~  135 (302)
                      +++.+++|++++|+|||||||||+++.|+|++.|+.|++.+.+.+..+.++.....         .+.+..     ..++
T Consensus        93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v  172 (302)
T 3b9q_A           93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVL  172 (302)
T ss_dssp             CCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHH
T ss_pred             cccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHH
Confidence            45567899999999999999999999999999999999999998765543211110         011110     1112


Q ss_pred             ccceeee---------ee-ecCCCCccccccccCHHHHHHHhccccCCCCCc--EEEEcCCCCCCcchHHHHHHHHHHHH
Q psy2071         136 GQEVGYS---------IR-FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQ--VILLDEAHERTLATDILMGVLKEVIK  203 (302)
Q Consensus       136 ~~~v~~~---------~~-~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~--lliLDE~~~p~~~lD~~~~~l~~ll~  203 (302)
                      .+++.+.         +. .......+..+..||   +||+++|++++.+|+  +|+||    |++++|+... +.++.+
T Consensus       173 ~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD----ptsglD~~~~-~~~~~~  244 (302)
T 3b9q_A          173 SKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD----GNTGLNMLPQ-AREFNE  244 (302)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE----GGGGGGGHHH-HHHHHH
T ss_pred             HHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe----CCCCcCHHHH-HHHHHH
Confidence            2222211         11 011112234556688   899999999999999  99999    6999997653 233221


Q ss_pred             HcCCCcEEEEEEec---------CHHHHHhhccCCCeeeecCcC
Q psy2071         204 QRADLKLVIMSATL---------DAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       204 ~~~~~~~~ii~~th---------d~~~~~~~~d~~~~l~i~g~~  238 (302)
                         ..+.+++++||         .++.+..+...+.++. .|+.
T Consensus       245 ---~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~-~Ge~  284 (302)
T 3b9q_A          245 ---VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIG-VGEA  284 (302)
T ss_dssp             ---HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEE-CSSS
T ss_pred             ---hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEe-CCCC
Confidence               24788999999         4445555555666665 5543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.71  E-value=3.8e-20  Score=158.58  Aligned_cols=158  Identities=14%  Similarity=0.047  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch----------hhhHHHHHHHhhhhh----
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR----------RVAAMSVAQRVSEEM----  131 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~----------~~~~~~~~~~~~~~~----  131 (302)
                      .++++++.|++|++++|+||||||||||+++|+|++ |  |.+.+ +....          .++...+........    
T Consensus        12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   87 (218)
T 1z6g_A           12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE   87 (218)
T ss_dssp             ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred             cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence            378999999999999999999999999999999988 5  88887 54321          111111111111000    


Q ss_pred             ----ccccccceeeeeeecCCC----Ccc--ccccccCHHHHHHHhc-----cccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071         132 ----DCQLGQEVGYSIRFEDCS----SPK--TVLKYMTDGMLLREGM-----SDPMLENYQVILLDEAHERTLATDILM-  195 (302)
Q Consensus       132 ----~~~~~~~v~~~~~~~~~~----~~~--~~~~~lS~G~~qr~~l-----a~al~~~p~lliLDE~~~p~~~lD~~~-  195 (302)
                          ..++..+ .|........    ...  -.-..+||||+||+++     +++++..|++++|||   |++++|... 
T Consensus        88 ~~l~~~~~~~~-~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde---~~~~~d~~~~  163 (218)
T 1z6g_A           88 DFLEYDNYANN-FYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS---RLLTRNTENQ  163 (218)
T ss_dssp             CEEEEEEETTE-EEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH---HHHHTCCCCH
T ss_pred             chhhhhhcccc-cCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH---HHHhcCCCCH
Confidence                0001111 1111000000    000  0013479999999999     899999999999999   888888432 


Q ss_pred             HHHHHHHHHc-CC------CcEEEEEEecCHHHHHhhccCCCe
Q psy2071         196 GVLKEVIKQR-AD------LKLVIMSATLDAGKFQQYFDNAPL  231 (302)
Q Consensus       196 ~~l~~ll~~~-~~------~~~~ii~~thd~~~~~~~~d~~~~  231 (302)
                      ..+.+.+... .+      .....++++||.+++...+++++.
T Consensus       164 ~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~  206 (218)
T 1z6g_A          164 EQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL  206 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence            2333322211 11      245567789999999888876643

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.71  E-value=4.4e-18  Score=145.86  Aligned_cols=165  Identities=13%  Similarity=0.090  Sum_probs=99.9

Q ss_pred             HHHHHHH-HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee
Q psy2071          66 YRTEFMT-LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR  144 (302)
Q Consensus        66 ~~~~i~~-~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  144 (302)
                      .++++.. -+++|++++|+||||||||||++++++...+..|.+.+.+.+........................+...-.
T Consensus        11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (235)
T 2w0m_A           11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDA   90 (235)
T ss_dssp             HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEEC
T ss_pred             HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEec
Confidence            4566665 688999999999999999999999999888888888887765422111111111111000000001110000


Q ss_pred             ecCCCCccccccccCHHHHHHHhccccCCCCCc--EEEEcCCCCCCcch--HHHH-HHHHHHHHH-cCCCcEEEEEEecC
Q psy2071         145 FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQ--VILLDEAHERTLAT--DILM-GVLKEVIKQ-RADLKLVIMSATLD  218 (302)
Q Consensus       145 ~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~--lliLDE~~~p~~~l--D~~~-~~l~~ll~~-~~~~~~~ii~~thd  218 (302)
                      ..............|.+++++...+.+...+|+  +||+||   |+..+  |+.. ..+.+.+.. .++.+++++++||+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe---~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~  167 (235)
T 2w0m_A           91 LMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDS---VSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQY  167 (235)
T ss_dssp             CC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEET---GGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-
T ss_pred             cccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEEC---chHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            000000011112348888887777666667999  999999   88665  6432 333333332 23458999999999


Q ss_pred             H--------HHHHhhccCCCeee
Q psy2071         219 A--------GKFQQYFDNAPLMN  233 (302)
Q Consensus       219 ~--------~~~~~~~d~~~~l~  233 (302)
                      .        ..+..+||++++|+
T Consensus       168 ~~~~~~~~~~~~~~~~d~vi~l~  190 (235)
T 2w0m_A          168 AITTSQAFGFGVEHVADGIIRFR  190 (235)
T ss_dssp             ----------CHHHHCSEEEEEE
T ss_pred             CcccccccccchheeeeEEEEEE
Confidence            9        55899999999998

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.70  E-value=4.7e-19  Score=156.50  Aligned_cols=131  Identities=12%  Similarity=0.084  Sum_probs=74.0

Q ss_pred             EEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH----HHHHHHhhhhhccccccceeeeeeecCCC-----
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA----MSVAQRVSEEMDCQLGQEVGYSIRFEDCS-----  149 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----  149 (302)
                      .++|+||||||||||+++|+|+..|++|.+.+.|........    ..+.+........++.+++++........     
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i   83 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI   83 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence            489999999999999999999999999999988865321110    01111111223456777777764332211     


Q ss_pred             -------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHH
Q psy2071         150 -------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAG  220 (302)
Q Consensus       150 -------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~  220 (302)
                             ..+.....||+||+||+++||+++.   +++|||   |+.++|+.- ..++.+    .+. ++++++.|..+
T Consensus        84 ~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---llllde---p~~gL~~lD~~~l~~L----~~~-~~vI~Vi~K~D  151 (270)
T 3sop_A           84 EKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISP---TGHSLRPLDLEFMKHL----SKV-VNIIPVIAKAD  151 (270)
T ss_dssp             HHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECC---CSSSCCHHHHHHHHHH----HTT-SEEEEEETTGG
T ss_pred             HHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEec---CCCcCCHHHHHHHHHH----Hhc-CcEEEEEeccc
Confidence                   0122345699999999999999886   999999   888888765 333333    222 45555555443

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.70  E-value=4.1e-18  Score=149.79  Aligned_cols=130  Identities=14%  Similarity=0.103  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-CCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR  144 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  144 (302)
                      ++++++  +++|++++|+|||||||||++++++|++.|+ +|.+.+.+.+....         .+       ....+..+
T Consensus        16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~---------~~-------~~~~~v~q   77 (261)
T 2eyu_A           16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV---------FK-------HKKSIVNQ   77 (261)
T ss_dssp             HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC---------CC-------CSSSEEEE
T ss_pred             HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee---------cC-------CcceeeeH
Confidence            577777  8999999999999999999999999999998 89999887653210         00       00111111


Q ss_pred             ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071         145 FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQ  224 (302)
Q Consensus       145 ~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~  224 (302)
                      ...  ..+.        ...|++++++|..+|++||+||   |+   |+..  +..+++.. +.|.+++++||+.+ +..
T Consensus        78 ~~~--gl~~--------~~l~~~la~aL~~~p~illlDE---p~---D~~~--~~~~l~~~-~~g~~vl~t~H~~~-~~~  137 (261)
T 2eyu_A           78 REV--GEDT--------KSFADALRAALREDPDVIFVGE---MR---DLET--VETALRAA-ETGHLVFGTLHTNT-AID  137 (261)
T ss_dssp             EEB--TTTB--------SCHHHHHHHHHHHCCSEEEESC---CC---SHHH--HHHHHHHH-HTTCEEEEEECCSS-HHH
T ss_pred             HHh--CCCH--------HHHHHHHHHHHhhCCCEEEeCC---CC---CHHH--HHHHHHHH-ccCCEEEEEeCcch-HHH
Confidence            000  0000        1228999999999999999999   88   5443  11222222 24789999999977 678


Q ss_pred             hccCCCeee
Q psy2071         225 YFDNAPLMN  233 (302)
Q Consensus       225 ~~d~~~~l~  233 (302)
                      +||++++|.
T Consensus       138 ~~dri~~l~  146 (261)
T 2eyu_A          138 TIHRIVDIF  146 (261)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHhhhc
Confidence            889887664

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.70  E-value=1.2e-17  Score=149.21  Aligned_cols=167  Identities=13%  Similarity=0.074  Sum_probs=99.5

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCchhhhHH-HHHHHhhhhhccccc-----
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQPRRVAAM-SVAQRVSEEMDCQLG-----  136 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~-----  136 (302)
                      +..+++++..+++|++++|+|+||||||||+++++|...+..| .+.+.+......... ....... .......     
T Consensus        22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~-~~~~~~~~~l~~  100 (296)
T 1cr0_A           22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHN-RVRLRQSDSLKR  100 (296)
T ss_dssp             CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHT-TCCGGGCHHHHH
T ss_pred             HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHc-CCChhhcccccc
Confidence            4458899999999999999999999999999999999999888 776655432111100 0000000 0000000     


Q ss_pred             ---------cceeeeeeecCCCCccccccccCHHH-HHHHhccccCCCCCcEEEEcCCCCCCc---c---hHH-HH-HHH
Q psy2071         137 ---------QEVGYSIRFEDCSSPKTVLKYMTDGM-LLREGMSDPMLENYQVILLDEAHERTL---A---TDI-LM-GVL  198 (302)
Q Consensus       137 ---------~~v~~~~~~~~~~~~~~~~~~lS~G~-~qr~~la~al~~~p~lliLDE~~~p~~---~---lD~-~~-~~l  198 (302)
                               ..+...+..... ........+|.++ ++++. ++++..+|++||+||   |+.   +   +|. .. ..+
T Consensus       101 ~~~~~~~~~~~~~~~l~~~~l-~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDe---pt~~~~~~~~~d~~~~~~~i  175 (296)
T 1cr0_A          101 EIIENGKFDQWFDELFGNDTF-HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDH---ISIVVSASGESDERKMIDNL  175 (296)
T ss_dssp             HHHHHTHHHHHHHHHHSSSCE-EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEE---EC-----------CHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhccCCE-EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcC---ccccCCCCCCCCHHHHHHHH
Confidence                     000000000000 0001113467777 45555 888999999999999   877   3   343 22 334


Q ss_pred             HHHHHHc-CCCcEEEEEEecCH--H--------------------HHHhhccCCCeeeecCc
Q psy2071         199 KEVIKQR-ADLKLVIMSATLDA--G--------------------KFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       199 ~~ll~~~-~~~~~~ii~~thd~--~--------------------~~~~~~d~~~~l~i~g~  237 (302)
                      .+.++.. ++.+++||++||+.  +                    .+.++||++++|+ .|+
T Consensus       176 ~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~-~~~  236 (296)
T 1cr0_A          176 MTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE-RNQ  236 (296)
T ss_dssp             HHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEE-EC-
T ss_pred             HHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEe-cCc
Confidence            4444443 33489999999994  5                    7889999999998 443

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.69  E-value=6.2e-19  Score=157.71  Aligned_cols=131  Identities=8%  Similarity=0.041  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccccc-ceeeee
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQ-EVGYSI  143 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~  143 (302)
                      .+++++++.|++|++++|+||||||||||+++|+|++   +|.|...+.+...            .+..++.+ ++.+..
T Consensus       114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~------------lf~~ti~~~ni~~~~  178 (305)
T 2v9p_A          114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSH------------FWLASLADTRAALVD  178 (305)
T ss_dssp             HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSG------------GGGGGGTTCSCEEEE
T ss_pred             hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCccc------------cccccHHHHhhccCc
Confidence            4689999999999999999999999999999999998   7888654433211            11123333 454432


Q ss_pred             eecC---------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEE
Q psy2071         144 RFED---------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIM  213 (302)
Q Consensus       144 ~~~~---------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii  213 (302)
                      ....         .... -....||||||||   |||++.+|++||       |+++|+.. ..+..             
T Consensus       179 ~~~~~~~~~i~~~L~~g-ldg~~LSgGqkQR---ARAll~~p~iLl-------Ts~LD~~~~~~i~~-------------  234 (305)
T 2v9p_A          179 DATHACWRYFDTYLRNA-LDGYPVSIDRKHK---AAVQIKAPPLLV-------TSNIDVQAEDRYLY-------------  234 (305)
T ss_dssp             EECHHHHHHHHHTTTGG-GGTCCEECCCSSC---CCCEECCCCEEE-------EESSCSTTCGGGGG-------------
T ss_pred             cccHHHHHHHHHHhHcc-CCccCcCHHHHHH---HHHHhCCCCEEE-------ECCCCHHHHHHHHH-------------
Confidence            1100         0000 0145799999999   999999999999       88888765 33321             


Q ss_pred             EEecCHHHHHhhccCCCeeeecCcC
Q psy2071         214 SATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       214 ~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       .||++..+ .+||++ +|+ .|+.
T Consensus       235 -ltH~~~~~-~~aD~i-vl~-~G~i  255 (305)
T 2v9p_A          235 -LHSRVQTF-RFEQPC-TDE-SGEQ  255 (305)
T ss_dssp             -GTTTEEEE-ECCCCC-CCC----C
T ss_pred             -HhCCHHHH-HhCCEE-EEe-CCEE
Confidence             18887754 689999 998 5653

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.69  E-value=2.5e-18  Score=165.56  Aligned_cols=148  Identities=13%  Similarity=0.007  Sum_probs=106.3

Q ss_pred             HHHHhCCEEEEEccCCCCccchhhhhhhcccccCCC--EEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCC
Q psy2071          72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGA--KAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCS  149 (302)
Q Consensus        72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  149 (302)
                      ..+.+|++++|+|+||||||||+++++|...+. |.  +++...++.. .......+    .+....+..    ......
T Consensus       276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~~-~l~~~~~~----~g~~~~~~~----~~g~~~  345 (525)
T 1tf7_A          276 GGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESRA-QLLRNAYS----WGMDFEEME----RQNLLK  345 (525)
T ss_dssp             SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCHH-HHHHHHHT----TSCCHHHHH----HTTSEE
T ss_pred             CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCHH-HHHHHHHH----cCCCHHHHH----hCCCEE
Confidence            378999999999999999999999999998875 64  3555544321 11111111    111111100    000001


Q ss_pred             CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH-----H-HHHHHHHHHcCCCcEEEEEEecCH----
Q psy2071         150 SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL-----M-GVLKEVIKQRADLKLVIMSATLDA----  219 (302)
Q Consensus       150 ~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~-----~-~~l~~ll~~~~~~~~~ii~~thd~----  219 (302)
                      ..+.....||+||+||+++|+++..+|++||+|    |++++|..     . ..+.++++..++.|+|++++||+.    
T Consensus       346 ~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD----p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~  421 (525)
T 1tf7_A          346 IVCAYPESAGLEDHLQIIKSEINDFKPARIAID----SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMG  421 (525)
T ss_dssp             ECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE----CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSC
T ss_pred             EEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc----ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccC
Confidence            112345679999999999999999999999999    79999976     5 677778777666789999999998    


Q ss_pred             ------HHHHhhccCCCeee
Q psy2071         220 ------GKFQQYFDNAPLMN  233 (302)
Q Consensus       220 ------~~~~~~~d~~~~l~  233 (302)
                            ..+..+||++++|+
T Consensus       422 ~~~~~~~~l~~~~D~vi~L~  441 (525)
T 1tf7_A          422 AHSITDSHISTITDTIILLQ  441 (525)
T ss_dssp             CCSSCSSCCTTTCSEEEEEE
T ss_pred             cccccCcccceeeeEEEEEE
Confidence                  77888999999887

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.68  E-value=8.2e-18  Score=144.12  Aligned_cols=144  Identities=11%  Similarity=0.054  Sum_probs=83.3

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccc-------cCCCEEEeecCchh-hhHHHHHHHhhhhhccccccceeeeee
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-------SVGAKAVACTQPRR-VAAMSVAQRVSEEMDCQLGQEVGYSIR  144 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-------~~G~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~  144 (302)
                      -|++|++++|+||||||||||+++|+|...+       ..|.+++.+..... .....+.+....... ++.+++.+...
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~   99 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD-EVLKHIYVARA   99 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHH-HHHHTEEEEEC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHH-HHhhcEEEEec
Confidence            5789999999999999999999999996554       22256666654211 111222222221111 33444443221


Q ss_pred             ecCCCCccccccccCHHHH-HHHhcccc-----C--CCCCcEEEEcCCCCCCcchHHH-------------H-HHHHHHH
Q psy2071         145 FEDCSSPKTVLKYMTDGML-LREGMSDP-----M--LENYQVILLDEAHERTLATDIL-------------M-GVLKEVI  202 (302)
Q Consensus       145 ~~~~~~~~~~~~~lS~G~~-qr~~la~a-----l--~~~p~lliLDE~~~p~~~lD~~-------------~-~~l~~ll  202 (302)
                                   .+.+++ +.+..+.+     +  ..+|++|++||   |+..+|+.             . ..+..+.
T Consensus       100 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe---~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~  163 (231)
T 4a74_A          100 -------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS---LTSHFRSEYIGRGALAERQQKLAKHLADLH  163 (231)
T ss_dssp             -------------CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEET---SSHHHHHHSCSTTHHHHHHHHHHHHHHHHH
T ss_pred             -------------CChHHHHHHHHHHHHHHHHhcccCCceeEEEECC---hHHHhccccCCCcchhHHHHHHHHHHHHHH
Confidence                         122222 11222222     2  56999999999   99998872             1 2233333


Q ss_pred             HHcCCCcEEEEEEecC----HHHHHhhccCCCeee
Q psy2071         203 KQRADLKLVIMSATLD----AGKFQQYFDNAPLMN  233 (302)
Q Consensus       203 ~~~~~~~~~ii~~thd----~~~~~~~~d~~~~l~  233 (302)
                      +..++.++|||++||+    ...+..+||++++|+
T Consensus       164 ~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~  198 (231)
T 4a74_A          164 RLANLYDIAVFVTNQVQANGGHILAHSATLRVYLR  198 (231)
T ss_dssp             HHHHHHTCEEEEEEECC---------CCSEEEEEE
T ss_pred             HHHHHCCCeEEEEeecccCcchhhHhhceEEEEEE
Confidence            3333458999999994    445999999999998

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.68  E-value=1.2e-17  Score=160.87  Aligned_cols=164  Identities=11%  Similarity=0.040  Sum_probs=102.4

Q ss_pred             HHHHHHHH-HHHhCCEEEEEccCCCCccchhhh--hhhcccccCCCEEEeecCchhhhHHHHHHH---hhhhhccccccc
Q psy2071          65 EYRTEFMT-LLAQNQCIVLVGETGSGKTTQIPQ--WCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSEEMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~-~i~~g~i~~liG~nGsGKSTll~~--i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  138 (302)
                      ..++++++ .|++|++++|+||||||||||+++  ++|+.+|+.|.+++.+.+... .....+..   +.+....  ..+
T Consensus        26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~-~~~~~~~~~g~~~q~~~~--~~~  102 (525)
T 1tf7_A           26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQ-DIIKNARSFGWDLAKLVD--EGK  102 (525)
T ss_dssp             TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHGGGTCCHHHHHH--TTS
T ss_pred             hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHH-HHHHHHHHcCCChHHhhc--cCc
Confidence            46899999 999999999999999999999999  689999999999999876421 11111111   1111110  011


Q ss_pred             eeeeeeecCCCCccccccccCHHHHHHHhccccC-CCCCcEEEEcC--CCCCCcchHHHH-HHHHHHHHHcCCCcEEEEE
Q psy2071         139 VGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPM-LENYQVILLDE--AHERTLATDILM-GVLKEVIKQRADLKLVIMS  214 (302)
Q Consensus       139 v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al-~~~p~lliLDE--~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~  214 (302)
                      +.+. ...........+..+.-+. +...+...| -.+|++|+|||  +.+|..++|+.. ..+.++++..++.|+|+|+
T Consensus       103 l~~~-~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~  180 (525)
T 1tf7_A          103 LFIL-DASPDPEGQEVVGGFDLSA-LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVM  180 (525)
T ss_dssp             EEEE-ECCCCSSCCSCCSSHHHHH-HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             EEEE-ecCcccchhhhhcccCHHH-HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence            2111 1100000011111111111 111222222 24689999999  233334568766 6778888766666899999


Q ss_pred             EecCHHHH---------HhhccCCCeee
Q psy2071         215 ATLDAGKF---------QQYFDNAPLMN  233 (302)
Q Consensus       215 ~thd~~~~---------~~~~d~~~~l~  233 (302)
                      +||+++++         ..+||++++|+
T Consensus       181 itH~~~~~~~~~~~~i~~~laD~vi~L~  208 (525)
T 1tf7_A          181 TTERIEEYGPIARYGVEEFVSDNVVILR  208 (525)
T ss_dssp             EEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred             EecCCCCccccccccceeeeeeEEEEEE
Confidence            99999884         55699999997

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.66  E-value=1e-17  Score=153.20  Aligned_cols=156  Identities=14%  Similarity=0.127  Sum_probs=101.6

Q ss_pred             HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH------Hh---hhhhc-----ccc
Q psy2071          70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ------RV---SEEMD-----CQL  135 (302)
Q Consensus        70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~------~~---~~~~~-----~~~  135 (302)
                      +++.+++|++++|+|||||||||+++.|+|++.|+.|++.+.+.+..+.++..+..      .+   .+...     .++
T Consensus       150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv  229 (359)
T 2og2_A          150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVL  229 (359)
T ss_dssp             CCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHH
T ss_pred             cceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhH
Confidence            34456789999999999999999999999999999999999998876543321111      11   11111     111


Q ss_pred             ccceeee---------ee-ecCCCCccccccccCHHHHHHHhccccCCCCCc--EEEEcCCCCCCcchHHHHHHHHHHHH
Q psy2071         136 GQEVGYS---------IR-FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQ--VILLDEAHERTLATDILMGVLKEVIK  203 (302)
Q Consensus       136 ~~~v~~~---------~~-~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~--lliLDE~~~p~~~lD~~~~~l~~ll~  203 (302)
                      .+++.+.         +. .......+..+..||   +||+++|++++.+|+  +|+||    |++++|.... +..+.+
T Consensus       230 ~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD----pttglD~~~~-~~~~~~  301 (359)
T 2og2_A          230 SKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD----GNTGLNMLPQ-AREFNE  301 (359)
T ss_dssp             HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE----GGGGGGGHHH-HHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc----CCCCCCHHHH-HHHHHH
Confidence            2222111         11 111112234556688   899999999999999  99999    6999997653 223221


Q ss_pred             HcCCCcEEEEEEecC---------HHHHHhhccCCCeeeecCc
Q psy2071         204 QRADLKLVIMSATLD---------AGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       204 ~~~~~~~~ii~~thd---------~~~~~~~~d~~~~l~i~g~  237 (302)
                         ..+++++++||.         +..+..+...+.++. .|.
T Consensus       302 ---~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig-~Ge  340 (359)
T 2og2_A          302 ---VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIG-VGE  340 (359)
T ss_dssp             ---HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEE-CSS
T ss_pred             ---hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEe-CCC
Confidence               247899999993         444555555555555 444

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.65  E-value=2.8e-17  Score=137.52  Aligned_cols=131  Identities=16%  Similarity=0.163  Sum_probs=82.6

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee-----------e
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR-----------F  145 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----------~  145 (302)
                      |++++|+||||||||||+++++|+++ ++| +.+.|.......              .....++|..+           +
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--------------~~~~~ig~~~~~~~g~~~~l~~~   64 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--------------QGGRRIGFDVVTLSGTRGPLSRV   64 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--------------TTSSEEEEEEEETTSCEEEEEEC
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--------------hhhceEEEEEEecccceehhhcc
Confidence            78999999999999999999999999 889 877765432110              00112222221           1


Q ss_pred             cCCC-------CccccccccCHHHHHHH-hccc---cCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEE-
Q psy2071         146 EDCS-------SPKTVLKYMTDGMLLRE-GMSD---PMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVI-  212 (302)
Q Consensus       146 ~~~~-------~~~~~~~~lS~G~~qr~-~la~---al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~i-  212 (302)
                      ....       ...+....+|+|+++++ ++++   |++.+|++|||||+ -|+...|... ..+.+++...  .++++ 
T Consensus        65 ~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~-g~~~~~~~~~~~~l~~~l~~~--~~~ilg  141 (189)
T 2i3b_A           65 GLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEI-GKMELFSQLFIQAVRQTLSTP--GTIILG  141 (189)
T ss_dssp             CCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCC-STTTTTCSHHHHHHHHHHHCS--SCCEEE
T ss_pred             cccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCC-CccccccHHHHHHHHHHHhCC--CcEEEE
Confidence            1000       01223345899999887 4455   68999999999996 3666677544 7777777642  12232 


Q ss_pred             -EEEecCH--HHHHhhc
Q psy2071         213 -MSATLDA--GKFQQYF  226 (302)
Q Consensus       213 -i~~thd~--~~~~~~~  226 (302)
                       +.++|+.  .++.+++
T Consensus       142 ti~vsh~~~~~~vd~i~  158 (189)
T 2i3b_A          142 TIPVPKGKPLALVEEIR  158 (189)
T ss_dssp             ECCCCCSSCCTTHHHHH
T ss_pred             EeecCCCCchHHHHHHe
Confidence             3445976  4444443

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.63  E-value=3.5e-17  Score=165.77  Aligned_cols=141  Identities=18%  Similarity=0.133  Sum_probs=89.2

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc-cccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY-SKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~-~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      .+++++.+++|++++|+|||||||||+++++++.. .+..|.. +    |....            .....+.+  ..++
T Consensus       652 ~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~-v----pa~~~------------~~~~~d~i--~~~i  712 (934)
T 3thx_A          652 PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCF-V----PCESA------------EVSIVDCI--LARV  712 (934)
T ss_dssp             CEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCC-B----SEEEE------------EEECCSEE--EEEC
T ss_pred             cccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCc-c----ccccc------------cchHHHHH--HHhc
Confidence            45677888899999999999999999999994321 1111200 0    00000            00000000  0111


Q ss_pred             cCCCCccccccccCHHHHHHHhccccC--CCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcC-CCcEEEEEEecCHH
Q psy2071         146 EDCSSPKTVLKYMTDGMLLREGMSDPM--LENYQVILLDEAHERTLATDILM--GVLKEVIKQRA-DLKLVIMSATLDAG  220 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~G~~qr~~la~al--~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~-~~~~~ii~~thd~~  220 (302)
                      .   ..+.....+|+|+.++..+++++  +.+|++|||||   |+.|+|+..  .+...+++... +.|.+++++||+.+
T Consensus       713 g---~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDE---p~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e  786 (934)
T 3thx_A          713 G---AGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDE---LGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE  786 (934)
T ss_dssp             C------------CHHHHHHHHHHHHHHHCCTTCEEEEES---CSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG
T ss_pred             C---chhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeC---CCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH
Confidence            1   12334456788888888887777  99999999999   999999865  33466666554 35889999999966


Q ss_pred             HHHhhccCCCeee
Q psy2071         221 KFQQYFDNAPLMN  233 (302)
Q Consensus       221 ~~~~~~d~~~~l~  233 (302)
                      . ..+||+++.+.
T Consensus       787 l-~~lad~~~~v~  798 (934)
T 3thx_A          787 L-TALANQIPTVN  798 (934)
T ss_dssp             G-GGGGGTCTTEE
T ss_pred             H-HHHhcccceeE
Confidence            4 57999998776

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.62  E-value=3.7e-17  Score=149.21  Aligned_cols=152  Identities=12%  Similarity=0.071  Sum_probs=103.6

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeee
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSI  143 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  143 (302)
                      ..+.+++ +.|.+|++++|+|+||||||||+++|+|+..|+.|.+.+.|...+.+...  .......   .....+.+..
T Consensus        59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~--i~~~~~~---~~~~~v~~~~  132 (347)
T 2obl_A           59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEF--LALLPQS---TLSKCVLVVT  132 (347)
T ss_dssp             CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHH--HTTSCHH---HHTTEEEEEE
T ss_pred             CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHH--HHhhhhh---hhhceEEEEE
Confidence            4578999 99999999999999999999999999999999999888877654322110  0000000   0000111111


Q ss_pred             eecC--------------------CCCc-----cccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071         144 RFED--------------------CSSP-----KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV  197 (302)
Q Consensus       144 ~~~~--------------------~~~~-----~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~  197 (302)
                      ....                    ....     -..+..||+|| |++++|   +.+|++         +.++|+.. ..
T Consensus       133 ~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~---------t~Gldp~~~~~  199 (347)
T 2obl_A          133 TSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV---------RGGFPPSVFSS  199 (347)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC---------BTTBCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc---------ccCCCHHHHHH
Confidence            0000                    0000     02356789999 899999   456544         68999887 78


Q ss_pred             HHHHHHHcC--CCcE-----EEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         198 LKEVIKQRA--DLKL-----VIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       198 l~~ll~~~~--~~~~-----~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      +.+++++..  +.|.     ||+++|||++  ..+||++.++. .|+
T Consensus       200 l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~-dG~  243 (347)
T 2obl_A          200 LPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSIL-DGH  243 (347)
T ss_dssp             HHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHC-SEE
T ss_pred             HHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEee-CcE
Confidence            888888765  4577     8999999998  67899988886 554

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.62  E-value=4.7e-17  Score=164.37  Aligned_cols=140  Identities=13%  Similarity=0.098  Sum_probs=89.8

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-CCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      .+++++.+++|++++|+|||||||||+|++++++.... .|.. +    +..            .......+.+  ..++
T Consensus       663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~-v----pa~------------~~~i~~~d~i--~~~i  723 (918)
T 3thx_B          663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY-V----PAE------------EATIGIVDGI--FTRM  723 (918)
T ss_dssp             CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC-B----SSS------------EEEEECCSEE--EEEC
T ss_pred             cccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc-c----cch------------hhhhhHHHHH--HHhC
Confidence            45778888999999999999999999999987643211 1110 0    000            0000000111  1111


Q ss_pred             cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHc-CCCcEEEEEEecCHHHH
Q psy2071         146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVIKQR-ADLKLVIMSATLDAGKF  222 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~-~~~~~~ii~~thd~~~~  222 (302)
                      ............+|+||++++.++++ +.+|++|||||   |+.|+|+..  .+...+++.. .+.|.+++++||+.+.+
T Consensus       724 g~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDE---P~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~  799 (918)
T 3thx_B          724 GAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDE---LGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC  799 (918)
T ss_dssp             ----------CCHHHHHHHHHHHHHH-CCTTCEEEEES---TTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             ChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeC---CCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH
Confidence            11122234456789999999999988 89999999999   999999875  3344666654 34588999999998755


Q ss_pred             HhhccCCC
Q psy2071         223 QQYFDNAP  230 (302)
Q Consensus       223 ~~~~d~~~  230 (302)
                       .++|+..
T Consensus       800 -~l~~~~~  806 (918)
T 3thx_B          800 -ELEKNYS  806 (918)
T ss_dssp             -GHHHHTT
T ss_pred             -HHHhhcc
Confidence             5777653

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.62  E-value=2e-16  Score=162.02  Aligned_cols=143  Identities=15%  Similarity=0.082  Sum_probs=96.7

Q ss_pred             HHHHHHHHHh-------CCEEEEEccCCCCccchhhhhhhcccccC--CCEEEeecCchhhhHHHHHHHhhhhhcccccc
Q psy2071          67 RTEFMTLLAQ-------NQCIVLVGETGSGKTTQIPQWCVEYSKSV--GAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQ  137 (302)
Q Consensus        67 ~~~i~~~i~~-------g~i~~liG~nGsGKSTll~~i~g~~~~~~--G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (302)
                      .+++++.+++       |++++|+|||||||||+++++ |++.+..  |. .+-. ..               ...++.+
T Consensus       772 ~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~-~Vpq-~~---------------~~l~v~d  833 (1022)
T 2o8b_B          772 PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGC-YVPA-EV---------------CRLTPID  833 (1022)
T ss_dssp             CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTC-CEES-SE---------------EEECCCS
T ss_pred             eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeE-Eecc-Cc---------------CCCCHHH
Confidence            4556666665       899999999999999999999 8876421  20 0100 00               0122233


Q ss_pred             ceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcCCC-cEEEEE
Q psy2071         138 EVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVIKQRADL-KLVIMS  214 (302)
Q Consensus       138 ~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~~~-~~~ii~  214 (302)
                      ++..  ++............++++|.+ ++++++++.+|++|||||   |+.|+|+..  ..+..+++...+. |.++++
T Consensus       834 ~I~~--rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDE---p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~  907 (1022)
T 2o8b_B          834 RVFT--RLGASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDE---LGRGTATFDGTAIANAVVKELAETIKCRTLF  907 (1022)
T ss_dssp             BEEE--ECC---------CHHHHHHHH-HHHHHHHCCTTCEEEEEC---TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred             HHHH--HcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEEC---CCCCCChHHHHHHHHHHHHHHHhcCCCEEEE
Confidence            3322  111111112233456777664 899999999999999999   999999765  4567777765543 889999


Q ss_pred             EecCHHHHHhhccCCCeee
Q psy2071         215 ATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       215 ~thd~~~~~~~~d~~~~l~  233 (302)
                      +||+.+.+..++|++.+++
T Consensus       908 ~TH~~el~~~~~d~~~v~~  926 (1022)
T 2o8b_B          908 STHYHSLVEDYSQNVAVRL  926 (1022)
T ss_dssp             ECCCHHHHHHTSSCSSEEE
T ss_pred             EeCCHHHHHHhCCcceeec
Confidence            9999999999999998875

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.61  E-value=3.8e-17  Score=147.10  Aligned_cols=147  Identities=9%  Similarity=-0.028  Sum_probs=85.7

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCC--CEEEeecCchhhhHHHHHHHhhhh--hccccc---cceeeee-ee
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVACTQPRRVAAMSVAQRVSEE--MDCQLG---QEVGYSI-RF  145 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~v~~~~-~~  145 (302)
                      +++|++++|+||||||||||+++|+|++.|..|  .+.+..++...... .....+...  .+....   +.+...+ .+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l  165 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSV  165 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence            788999999999999999999999999999877  34443333221111 111111100  000000   0000000 11


Q ss_pred             cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHH-Hh
Q psy2071         146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKF-QQ  224 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~-~~  224 (302)
                      . ....+..+..||+||+||+++|++++.+|++|||||   |+...|.....+      ......+ ++++|+.+.. ..
T Consensus       166 ~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDe---p~~~~d~~~~~l------~~~~D~~-I~V~a~~~~~~~R  234 (312)
T 3aez_A          166 K-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEG---LNVLQTGPTLMV------SDLFDFS-LYVDARIEDIEQW  234 (312)
T ss_dssp             H-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEEC---TTTTCCCSSCCG------GGGCSEE-EEEEECHHHHHHH
T ss_pred             C-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECC---ccccCCcchHHH------HHhcCcE-EEEECCHHHHHHH
Confidence            1 111235567899999999999999999999999999   877765311011      1112444 4446666553 34


Q ss_pred             hccCCCee
Q psy2071         225 YFDNAPLM  232 (302)
Q Consensus       225 ~~d~~~~l  232 (302)
                      +.+|...+
T Consensus       235 ~i~R~~~~  242 (312)
T 3aez_A          235 YVSRFLAM  242 (312)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44554433

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.60  E-value=4.9e-16  Score=142.22  Aligned_cols=125  Identities=13%  Similarity=0.098  Sum_probs=82.1

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcc
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPK  152 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  152 (302)
                      .+.+|++++|+|||||||||++++++|++.|+.|...+...++....               .....++..+....    
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~---------------~~~~~~~v~q~~~~----  179 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV---------------HESKKCLVNQREVH----  179 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC---------------CCCSSSEEEEEEBT----
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh---------------hhccccceeeeeec----
Confidence            56788899999999999999999999999988554444433332110               00011111111100    


Q ss_pred             ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCe
Q psy2071         153 TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPL  231 (302)
Q Consensus       153 ~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~  231 (302)
                        ...++...    +|+++|..+|++||+||   |+   |... ..+.++    .+.|.++++++|+.+.+ ..+||++.
T Consensus       180 --~~~~~~~~----~La~aL~~~PdvillDE---p~---d~e~~~~~~~~----~~~G~~vl~t~H~~~~~-~~~dRli~  242 (356)
T 3jvv_A          180 --RDTLGFSE----ALRSALREDPDIILVGE---MR---DLETIRLALTA----AETGHLVFGTLHTTSAA-KTIDRVVD  242 (356)
T ss_dssp             --TTBSCHHH----HHHHHTTSCCSEEEESC---CC---SHHHHHHHHHH----HHTTCEEEEEESCSSHH-HHHHHHHH
T ss_pred             --cccCCHHH----HHHHHhhhCcCEEecCC---CC---CHHHHHHHHHH----HhcCCEEEEEEccChHH-HHHHHHhh
Confidence              01122222    89999999999999999   87   4333 333333    23488999999999877 78999887


Q ss_pred             ee
Q psy2071         232 MN  233 (302)
Q Consensus       232 l~  233 (302)
                      |.
T Consensus       243 l~  244 (356)
T 3jvv_A          243 VF  244 (356)
T ss_dssp             TS
T ss_pred             hc
Confidence            73

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.59  E-value=6.1e-17  Score=152.11  Aligned_cols=154  Identities=10%  Similarity=0.008  Sum_probs=102.0

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH--------HHHHH---hhh---
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM--------SVAQR---VSE---  129 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~--------~~~~~---~~~---  129 (302)
                      ..+.+++ +.|.+|++++|+||||||||||+++|+|+..|+.|.+.+.|...+.+...        .....   +++   
T Consensus       145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~  223 (438)
T 2dpy_A          145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADV  223 (438)
T ss_dssp             CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTS
T ss_pred             ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCC
Confidence            4578999 99999999999999999999999999999999999998888742222110        00000   000   


Q ss_pred             --hhccccccceeeeeeecCCCC-----ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071         130 --EMDCQLGQEVGYSIRFEDCSS-----PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV  201 (302)
Q Consensus       130 --~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l  201 (302)
                        ....++.+++.+.........     .-..+..+|+|| ||+++|   +.+|++         +.++|+.. ..+.++
T Consensus       224 ~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~~---------t~glD~~~~~~l~~l  290 (438)
T 2dpy_A          224 SPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPPA---------TKGYPPSVFAKLPAL  290 (438)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCCC---------SSSCCTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCcc---------cccCCHHHHHHHHHH
Confidence              011112222111110000000     001245689999 999999   677765         78999776 778888


Q ss_pred             HHHcCC----CcE-----EEEEEecCHHHHHhhccCCCeee
Q psy2071         202 IKQRAD----LKL-----VIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       202 l~~~~~----~~~-----~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      +.+...    .|.     ||+++|||++  ..+||++.+|.
T Consensus       291 l~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~  329 (438)
T 2dpy_A          291 VERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAIL  329 (438)
T ss_dssp             HTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHS
T ss_pred             HHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEe
Confidence            877654    264     8999999997  56777777665

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.57  E-value=1e-15  Score=122.89  Aligned_cols=79  Identities=14%  Similarity=0.180  Sum_probs=68.9

Q ss_pred             ccccccccCHHHHHHHhcc------ccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071         151 PKTVLKYMTDGMLLREGMS------DPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQ  223 (302)
Q Consensus       151 ~~~~~~~lS~G~~qr~~la------~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~  223 (302)
                      .++.+..|||||+||++||      ++|+.+|+++||||   ||+++|+.. ..+.+++....+.+.+|+++|||. .+.
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDE---Pt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~  126 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDE---PTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELK  126 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEES---CSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGG
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEEC---CCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHH
Confidence            3566789999999999876      89999999999999   999999887 778888887655578999999998 577


Q ss_pred             hhccCCCeee
Q psy2071         224 QYFDNAPLMN  233 (302)
Q Consensus       224 ~~~d~~~~l~  233 (302)
                      .+||++++|+
T Consensus       127 ~~~d~ii~l~  136 (148)
T 1f2t_B          127 DAADHVIRIS  136 (148)
T ss_dssp             GGCSEEEEEE
T ss_pred             HhCCEEEEEE
Confidence            8999999996

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.56  E-value=2e-15  Score=150.32  Aligned_cols=123  Identities=15%  Similarity=0.102  Sum_probs=82.2

Q ss_pred             CCEEEEEccCCCCccchhhhhhhccc-ccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee-cCCCCcccc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYS-KSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF-EDCSSPKTV  154 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~-~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~  154 (302)
                      |++++|+|||||||||++++++|+.. +..|...     +..                  ...+++..+. ......+..
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-----pa~------------------~~~i~~v~~i~~~~~~~d~l  632 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-----PAE------------------EAHLPLFDGIYTRIGASDDL  632 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-----SSS------------------EEEECCCSEEEEECCC----
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee-----ehh------------------ccceeeHHHhhccCCHHHHH
Confidence            99999999999999999999999864 5667531     100                  0011111111 111112233


Q ss_pred             ccccCHHHHHHHhccccC--CCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcCCCcEEEEEEecCHHHHHhhc
Q psy2071         155 LKYMTDGMLLREGMSDPM--LENYQVILLDEAHERTLATDILM--GVLKEVIKQRADLKLVIMSATLDAGKFQQYF  226 (302)
Q Consensus       155 ~~~lS~G~~qr~~la~al--~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~  226 (302)
                      ...+|+|+++++.+++++  +.+|+++||||++-.|+++|...  ..+.+.+..   .|.+++++||+.+.. .++
T Consensus       633 ~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~-~~~  704 (765)
T 1ewq_A          633 AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELT-ALG  704 (765)
T ss_dssp             --CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHH-TCC
T ss_pred             HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHH-Hhh
Confidence            345899999999999999  99999999999211299999764  245555544   478999999998775 455

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.54  E-value=3.4e-15  Score=136.50  Aligned_cols=146  Identities=12%  Similarity=0.123  Sum_probs=89.9

Q ss_pred             HHHHHH-HHHHhCCEEEEEccCCCCccchhhhhhhcc--cccC----CC-EEEeecCchh-hhHHHHHHHhhhhhccccc
Q psy2071          66 YRTEFM-TLLAQNQCIVLVGETGSGKTTQIPQWCVEY--SKSV----GA-KAVACTQPRR-VAAMSVAQRVSEEMDCQLG  136 (302)
Q Consensus        66 ~~~~i~-~~i~~g~i~~liG~nGsGKSTll~~i~g~~--~~~~----G~-~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~  136 (302)
                      .++.+. ..|++|++++|+||||||||||+.++++..  +|+.    |. ++|.+..... .....+++...... .++.
T Consensus       119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~-~~v~  197 (349)
T 1pzn_A          119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDP-DEVL  197 (349)
T ss_dssp             HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCH-HHHG
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCH-HHHh
Confidence            355553 578899999999999999999999999987  6666    56 6777655311 11112222221111 1344


Q ss_pred             cceeeeeeecCCCCccccccccCHHHHHHHhccccCC-------CCCcEEEEcCCCCCCcchHHH-------------H-
Q psy2071         137 QEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPML-------ENYQVILLDEAHERTLATDIL-------------M-  195 (302)
Q Consensus       137 ~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~-------~~p~lliLDE~~~p~~~lD~~-------------~-  195 (302)
                      +++.+...            .-+.++.+++.++++++       .+|++||+||   |++.+|+.             . 
T Consensus       198 ~ni~~~~~------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs---~ta~ld~~~~~~~~~~~r~~~~~  262 (349)
T 1pzn_A          198 KHIYVARA------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS---LTSHFRSEYIGRGALAERQQKLA  262 (349)
T ss_dssp             GGEEEEEC------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEET---SSTTHHHHCCSTTTHHHHHHHHH
T ss_pred             hCEEEEec------------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeC---chHhhhhhhcccccHHHHHHHHH
Confidence            45443321            11467788888888877       7899999999   99999873             1 


Q ss_pred             HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                      ..+..+....++.++++++++|.......+++
T Consensus       263 ~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~  294 (349)
T 1pzn_A          263 KHLADLHRLANLYDIAVFVTNQVQARPDAFFG  294 (349)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEECC--------
T ss_pred             HHHHHHHHHHHHcCcEEEEEcccccccccccC
Confidence            22222222223458899999998776554443

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.53  E-value=8.8e-15  Score=131.16  Aligned_cols=137  Identities=16%  Similarity=0.126  Sum_probs=84.1

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---------Hhhhhh----ccccccceeee
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---------RVSEEM----DCQLGQEVGYS  142 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---------~~~~~~----~~~~~~~v~~~  142 (302)
                      +|++++|+|||||||||+++.|+|++.|+.|++.+.+.+..+.++.....         .+.+..    ..++.+++.+.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999998765433211110         011110    01112222111


Q ss_pred             ------e-eecCCCCccccccccCHHHHHHHhccccCCCCCc--EEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy2071         143 ------I-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQ--VILLDEAHERTLATDILMGVLKEVIKQRADLKLVIM  213 (302)
Q Consensus       143 ------~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~--lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii  213 (302)
                            . -.+.....+.....++...+||+++||+++.+|+  ++.||.    +.+.+.. ..+..+.+.   .+.+++
T Consensus       181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa----~t~~~~~-~~~~~~~~~---~~~t~i  252 (304)
T 1rj9_A          181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDA----VTGQNGL-EQAKKFHEA---VGLTGV  252 (304)
T ss_dssp             HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEET----TBCTHHH-HHHHHHHHH---HCCSEE
T ss_pred             HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcH----HHHHHHH-HHHHHHHHH---cCCcEE
Confidence                  0 0111111112223355566899999999999999  677875    4555532 333443322   267899


Q ss_pred             EEecCHH
Q psy2071         214 SATLDAG  220 (302)
Q Consensus       214 ~~thd~~  220 (302)
                      ++||+.+
T Consensus       253 ivTh~d~  259 (304)
T 1rj9_A          253 IVTKLDG  259 (304)
T ss_dssp             EEECTTS
T ss_pred             EEECCcc
Confidence            9999843

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.48  E-value=2.1e-14  Score=127.14  Aligned_cols=138  Identities=12%  Similarity=0.088  Sum_probs=78.8

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhccccc----------CCCE-EEeecCchhhhHHHHHHHhhhhhcc----cccc
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS----------VGAK-AVACTQPRRVAAMSVAQRVSEEMDC----QLGQ  137 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~----------~G~~-~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~  137 (302)
                      -+.+|++++|+||||||||||+.++++.....          .|.+ ++........ .......+......    ...+
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~-~~~r~~~~g~~~~~~~~~~~~~  104 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTA-IHHRLHALGAHLSAEERQAVAD  104 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHH-HHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHH-HHHHHHHHHhhcChhhhhhccC
Confidence            47899999999999999999999999866532          3444 3333332210 00001111110000    0011


Q ss_pred             ceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc--chHHH----HHHHHHHHHHc-CCCcE
Q psy2071         138 EVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL--ATDIL----MGVLKEVIKQR-ADLKL  210 (302)
Q Consensus       138 ~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~--~lD~~----~~~l~~ll~~~-~~~~~  210 (302)
                      .+.    +.  ...+..+..+|+|+++++   ++++.+|++||+||   |+.  ++|..    ...+.+.+... ++.++
T Consensus       105 ~l~----l~--~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe---~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~  172 (279)
T 1nlf_A          105 GLL----IQ--PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDT---LRRFHIEEENASGPMAQVIGRMEAIAADTGC  172 (279)
T ss_dssp             HEE----EC--CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEEC---GGGGCCSCTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             ceE----Ee--ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECC---HHHhcCCCcCchHHHHHHHHHHHHHHHHcCC
Confidence            221    11  112345678999998875   46677999999999   877  66641    12333333333 34588


Q ss_pred             EEEEEecCHHHHH
Q psy2071         211 VIMSATLDAGKFQ  223 (302)
Q Consensus       211 ~ii~~thd~~~~~  223 (302)
                      |||+++|+.....
T Consensus       173 tvi~i~H~~~~~~  185 (279)
T 1nlf_A          173 SIVFLHHASKGAA  185 (279)
T ss_dssp             EEEEEEEC-----
T ss_pred             EEEEEecCCCccc
Confidence            9999999987653

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.47  E-value=1.1e-14  Score=146.98  Aligned_cols=139  Identities=10%  Similarity=0.055  Sum_probs=98.0

Q ss_pred             ccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhh--hccccccc-------------eeeeeeecCC-CCccc
Q psy2071          90 KTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEE--MDCQLGQE-------------VGYSIRFEDC-SSPKT  153 (302)
Q Consensus        90 KSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------------v~~~~~~~~~-~~~~~  153 (302)
                      .+|...|....+.|..+.+.+.|.+........+...+...  ...+..+.             ..+...+... ...++
T Consensus       381 ~~~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r  460 (916)
T 3pih_A          381 QRTCSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSR  460 (916)
T ss_dssp             EEECTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTS
T ss_pred             cccchhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccC
Confidence            35566666777889999999999876544333333222111  11111000             0000011111 12356


Q ss_pred             cccccCHHHHHHHhccccCCCCCc--EEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCC
Q psy2071         154 VLKYMTDGMLLREGMSDPMLENYQ--VILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAP  230 (302)
Q Consensus       154 ~~~~lS~G~~qr~~la~al~~~p~--lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~  230 (302)
                      .+..|||||+||++||++|+.+|+  +|||||   ||++||+.. ..+.++++.+++.|.|||++|||++.+. .||+++
T Consensus       461 ~~~~LSGGe~QRv~LAraL~~~p~~~lllLDE---PT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~-~aD~ii  536 (916)
T 3pih_A          461 SATTLSGGESQRIRLATQIGSGLTGVIYVLDE---PTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIR-NADHII  536 (916)
T ss_dssp             BGGGCCHHHHHHHHHHHHHHTTCCSCEEEEEC---TTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHH-TCSEEE
T ss_pred             CcccCCHHHHHHHHHHHHHhhCCCCcEEEEEC---CccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEE
Confidence            778999999999999999999887  999999   999999877 7888898888888999999999998876 499999


Q ss_pred             ee
Q psy2071         231 LM  232 (302)
Q Consensus       231 ~l  232 (302)
                      +|
T Consensus       537 ~l  538 (916)
T 3pih_A          537 DI  538 (916)
T ss_dssp             EE
T ss_pred             EE
Confidence            99

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.47  E-value=3.7e-15  Score=129.60  Aligned_cols=151  Identities=9%  Similarity=0.030  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-----CCCEEEeecCc--hhhhHHHHHHHhhhhhcc--c
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-----VGAKAVACTQP--RRVAAMSVAQRVSEEMDC--Q  134 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-----~G~~~i~~~~~--~~~~~~~~~~~~~~~~~~--~  134 (302)
                      ..+++++++.+++|++++|+|||||||||++++|+|++...     ...+.+..++.  +.................  .
T Consensus        12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~   91 (245)
T 2jeo_A           12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHP   91 (245)
T ss_dssp             -----------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSG
T ss_pred             ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCc
Confidence            34689999999999999999999999999999999976211     01121222211  001111000000000000  0


Q ss_pred             cc---cceeeeee-ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcE
Q psy2071         135 LG---QEVGYSIR-FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKL  210 (302)
Q Consensus       135 ~~---~~v~~~~~-~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~  210 (302)
                      ..   +.+.-.+. +.  ......+..+|+||+||+.+ ++++.+|+++|+||   |....+...   .+    .  .+.
T Consensus        92 ~~~~~~~~~~~L~~l~--~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg---~~~~~~~~l---~~----~--~~~  156 (245)
T 2jeo_A           92 DAFDNDLMHRTLKNIV--EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEG---ILVFYSQEI---RD----M--FHL  156 (245)
T ss_dssp             GGBCHHHHHHHHHHHH--TTCCEEECCEETTTTEECSS-CEEECCCSEEEEEC---TTTTTSHHH---HT----T--CSE
T ss_pred             ccccHHHHHHHHHHHH--CCCCeecccccccccCccCc-eEEecCCCEEEEeC---ccccccHHH---HH----h--cCe
Confidence            00   00000000 10  12234567799999999988 58889999999999   766555421   11    1  378


Q ss_pred             EEEEEecCHHHH-HhhccCC
Q psy2071         211 VIMSATLDAGKF-QQYFDNA  229 (302)
Q Consensus       211 ~ii~~thd~~~~-~~~~d~~  229 (302)
                      +|+++||+...+ ..+++++
T Consensus       157 ~i~v~th~~~~~~r~~~r~~  176 (245)
T 2jeo_A          157 RLFVDTDSDVRLSRRVLRDV  176 (245)
T ss_dssp             EEEEECCHHHHHHHHHHHHT
T ss_pred             EEEEECCHHHHHHHHHHHHH
Confidence            999999974444 4444433

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.47  E-value=2e-15  Score=135.40  Aligned_cols=137  Identities=16%  Similarity=0.090  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc-ccccCCCEEEeecCchhhhHHHHHHHhhh----hhcccccccee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE-YSKSVGAKAVACTQPRRVAAMSVAQRVSE----EMDCQLGQEVG  140 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~-~~~~~G~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~  140 (302)
                      +++++++.|      +|+|+||||||||+++|+|. ..|++| +.+.|..............+.+    ....++.++.+
T Consensus        13 ~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g   85 (301)
T 2qnr_A           13 VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPG   85 (301)
T ss_dssp             -----CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC-
T ss_pred             EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhh
Confidence            455555544      99999999999999999997 788888 6665543221100000001111    12334555555


Q ss_pred             eeeeecC--C--CCcc-------ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc-hHHHHHHHHHHHHHc-CC
Q psy2071         141 YSIRFED--C--SSPK-------TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA-TDILMGVLKEVIKQR-AD  207 (302)
Q Consensus       141 ~~~~~~~--~--~~~~-------~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~-lD~~~~~l~~ll~~~-~~  207 (302)
                      +......  .  ....       ..+..+|+||+||+.+|++++    +|++||   |+.+ +|+...   ++++.. .+
T Consensus        86 ~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~lde---Pt~~~Ld~~~~---~~l~~l~~~  155 (301)
T 2qnr_A           86 YGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFIS---PFGHGLKPLDV---AFMKAIHNK  155 (301)
T ss_dssp             ----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEEC---SSSSSCCHHHH---HHHHHHTTT
T ss_pred             hhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeec---CcccCCCHHHH---HHHHHHHhc
Confidence            5322110  0  0011       445679999999999999986    999999   9874 998752   333332 23


Q ss_pred             CcEEEEEEecCH
Q psy2071         208 LKLVIMSATLDA  219 (302)
Q Consensus       208 ~~~~ii~~thd~  219 (302)
                      .++++++++||+
T Consensus       156 ~~iilV~~K~Dl  167 (301)
T 2qnr_A          156 VNIVPVIAKADT  167 (301)
T ss_dssp             SCEEEEECCGGG
T ss_pred             CCEEEEEEeCCC
Confidence            479999999997

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.47  E-value=2.5e-14  Score=131.80  Aligned_cols=128  Identities=13%  Similarity=0.102  Sum_probs=85.0

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-CCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +++++  +++|++++|+|||||||||++++++|++.|+ +|.+.+.+.... .               .....+++..+.
T Consensus       128 l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---------------~~~~~~~~v~Q~  189 (372)
T 2ewv_A          128 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---------------VFKHKKSIVNQR  189 (372)
T ss_dssp             HHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---------------CCCCSSSEEEEE
T ss_pred             HHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---------------hhccCceEEEee
Confidence            44443  7899999999999999999999999999998 898877664321 0               011223333321


Q ss_pred             cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhh
Q psy2071         146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQY  225 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~  225 (302)
                      ....    ....+      +.+++++|..+|++|++||   |+   |...  +..+++.. ..|.++++++|+.+ +..+
T Consensus       190 ~~g~----~~~~~------~~~l~~~L~~~pd~illdE---~~---d~e~--~~~~l~~~-~~g~~vi~t~H~~~-~~~~  249 (372)
T 2ewv_A          190 EVGE----DTKSF------ADALRAALREDPDVIFVGE---MR---DLET--VETALRAA-ETGHLVFGTLHTNT-AIDT  249 (372)
T ss_dssp             EBTT----TBSCS------HHHHHHHTTSCCSEEEESC---CC---SHHH--HHHHHHHH-TTTCEEEECCCCCS-HHHH
T ss_pred             ecCC----CHHHH------HHHHHHHhhhCcCEEEECC---CC---CHHH--HHHHHHHH-hcCCEEEEEECcch-HHHH
Confidence            1000    01222      4588889999999999999   87   3322  22223332 34788999999855 7778


Q ss_pred             ccCCCee
Q psy2071         226 FDNAPLM  232 (302)
Q Consensus       226 ~d~~~~l  232 (302)
                      +|+++.|
T Consensus       250 ~~rl~~l  256 (372)
T 2ewv_A          250 IHRIVDI  256 (372)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            8887554

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.46  E-value=1.1e-14  Score=145.81  Aligned_cols=142  Identities=15%  Similarity=0.084  Sum_probs=83.9

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-cCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-SVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      .+++++. ++|++++|+|||||||||++++++|+..+ ..|.. +    +...            ....+...+  ..++
T Consensus       598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-v----pa~~------------~~i~~~~~i--~~~~  657 (800)
T 1wb9_A          598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-V----PAQK------------VEIGPIDRI--FTRV  657 (800)
T ss_dssp             CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-B----SSSE------------EEECCCCEE--EEEE
T ss_pred             eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-c----chhc------------ccceeHHHH--HhhC
Confidence            4555666 78999999999999999999999997532 22310 0    0000            000000011  1111


Q ss_pred             cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcCC-CcEEEEEEecCHHHH
Q psy2071         146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVIKQRAD-LKLVIMSATLDAGKF  222 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~~-~~~~ii~~thd~~~~  222 (302)
                      ............+|.+|++. +.+...+.+|++|||||   |+.|+|+.-  .++..+++...+ .|.+++++||+.+..
T Consensus       658 ~~~d~l~~~~stf~~e~~~~-~~il~~a~~psLlLLDE---p~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~  733 (800)
T 1wb9_A          658 GAADDLASGRSTFMVEMTET-ANILHNATEYSLVLMDE---IGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT  733 (800)
T ss_dssp             C-----------CHHHHHHH-HHHHHHCCTTEEEEEES---CCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             CHHHHHHhhhhhhhHHHHHH-HHHHHhccCCCEEEEEC---CCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH
Confidence            11111112234466777654 33444589999999999   988877543  334566665544 488999999999765


Q ss_pred             HhhccCCCeee
Q psy2071         223 QQYFDNAPLMN  233 (302)
Q Consensus       223 ~~~~d~~~~l~  233 (302)
                       .+||++..+.
T Consensus       734 -~l~d~~~~v~  743 (800)
T 1wb9_A          734 -QLPEKMEGVA  743 (800)
T ss_dssp             -GHHHHSTTEE
T ss_pred             -HHhhhhhceE
Confidence             5898876654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.45  E-value=1.9e-14  Score=122.26  Aligned_cols=149  Identities=12%  Similarity=0.015  Sum_probs=87.6

Q ss_pred             HHHHHHH-HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc-hhhhHHHHHHHhhhhhccccccceeeee
Q psy2071          66 YRTEFMT-LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP-RRVAAMSVAQRVSEEMDCQLGQEVGYSI  143 (302)
Q Consensus        66 ~~~~i~~-~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~  143 (302)
                      .++++.. -+++|++++|+|+||||||||+.++++  .+..+.+++..... .........    ........ .+.   
T Consensus         8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~----~~~~~~~~-~~~---   77 (220)
T 2cvh_A            8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMA----ETRGLNPE-EAL---   77 (220)
T ss_dssp             HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHH----HTTTCCHH-HHH---
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHH----HhcCCChH-HHh---
Confidence            4666665 688999999999999999999999998  32223334433321 111111111    11111000 000   


Q ss_pred             eecCCCCccccccccCHHH--HHHHhccccCCCC-CcEEEEcCCCCCCcchHHH---------H-HHHHHHHHHcCCCcE
Q psy2071         144 RFEDCSSPKTVLKYMTDGM--LLREGMSDPMLEN-YQVILLDEAHERTLATDIL---------M-GVLKEVIKQRADLKL  210 (302)
Q Consensus       144 ~~~~~~~~~~~~~~lS~G~--~qr~~la~al~~~-p~lliLDE~~~p~~~lD~~---------~-~~l~~ll~~~~~~~~  210 (302)
                             .+-.+..+++++  ++++..+++++.+ |++||+||   |+..+|..         . ..+..+....++.++
T Consensus        78 -------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~---~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  147 (220)
T 2cvh_A           78 -------SRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDS---ITAHYRAEENRSGLIAELSRQLQVLLWIARKHNI  147 (220)
T ss_dssp             -------HHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEEC---CCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred             -------hcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcC---cHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence                   000122334443  4567777788875 99999999   88777631         1 222222222223478


Q ss_pred             EEEEEecCHH-------------HHHhhccCCCeeee
Q psy2071         211 VIMSATLDAG-------------KFQQYFDNAPLMNV  234 (302)
Q Consensus       211 ~ii~~thd~~-------------~~~~~~d~~~~l~i  234 (302)
                      ++++++|...             .+..+||.+++|+-
T Consensus       148 ~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~  184 (220)
T 2cvh_A          148 PVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDK  184 (220)
T ss_dssp             CEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEE
T ss_pred             EEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEE
Confidence            8999999765             67889999999983

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.40  E-value=7.3e-14  Score=128.24  Aligned_cols=135  Identities=16%  Similarity=0.056  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeee-ee
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSI-RF  145 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~  145 (302)
                      .+++++.+++|++++|+||||||||||+++|+|+++|+.|.+.+.+.......              .....+++.. +.
T Consensus       165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~--------------~~~~~v~~v~~q~  230 (361)
T 2gza_A          165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLP--------------DHPNHVHLFYPSE  230 (361)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCT--------------TCSSEEEEECC--
T ss_pred             HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCcc--------------ccCCEEEEeecCc
Confidence            48999999999999999999999999999999999999999999864211000              0112333332 11


Q ss_pred             cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhh
Q psy2071         146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQY  225 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~  225 (302)
                      ..        ..+++++-++..++.++..+|+.+++||   +...  .    +.+++........+++.++|..+ +...
T Consensus       231 ~~--------~~~~~~~t~~~~i~~~l~~~pd~~l~~e---~r~~--~----~~~~l~~l~~g~~~~l~t~H~~~-~~~~  292 (361)
T 2gza_A          231 AK--------EEENAPVTAATLLRSCLRMKPTRILLAE---LRGG--E----AYDFINVAASGHGGSITSCHAGS-CELT  292 (361)
T ss_dssp             ----------------CCHHHHHHHHTTSCCSEEEESC---CCST--H----HHHHHHHHHTTCCSCEEEEECSS-HHHH
T ss_pred             cc--------cccccccCHHHHHHHHHhcCCCEEEEcC---chHH--H----HHHHHHHHhcCCCeEEEEECCCC-HHHH
Confidence            00        0113455677888888889999999999   5431  1    22233333332346677789854 7788


Q ss_pred             ccCCCeee
Q psy2071         226 FDNAPLMN  233 (302)
Q Consensus       226 ~d~~~~l~  233 (302)
                      ++|+..+.
T Consensus       293 ~~Rl~~l~  300 (361)
T 2gza_A          293 FERLALMV  300 (361)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887775

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.37  E-value=1e-13  Score=118.56  Aligned_cols=127  Identities=12%  Similarity=0.025  Sum_probs=72.3

Q ss_pred             HHHHhCCEEEEEccCCCCccchhhhhhhcccc--cCCCEEEeecCchh-----hhHHHHHHHhhhhhccccccceeeeee
Q psy2071          72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK--SVGAKAVACTQPRR-----VAAMSVAQRVSEEMDCQLGQEVGYSIR  144 (302)
Q Consensus        72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~--~~G~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~  144 (302)
                      ...++|++++|+||||||||||+++|+|+++|  ..|.+.+.+..++.     +.+..+....  ....+....+...+.
T Consensus        11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~--f~~~~~~~~f~E~~~   88 (219)
T 1s96_A           11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDE--FKEMISRDAFLEHAE   88 (219)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHH--HHHHHHTTCEEEEEE
T ss_pred             ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHH--HHHHHhcCHHHHHHH
Confidence            35789999999999999999999999999986  57888777655432     1111111111  111112111111111


Q ss_pred             ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071         145 FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQ  223 (302)
Q Consensus       145 ~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~  223 (302)
                      +.... ..     .+   ++.   +..++..++++|||        +|+.. ..+++++.    .+.+|+++||+++.+.
T Consensus        89 ~~~~~-yg-----~~---~~~---v~~~l~~G~illLD--------LD~~~~~~i~~~l~----~~~tI~i~th~~~~l~  144 (219)
T 1s96_A           89 VFGNY-YG-----TS---REA---IEQVLATGVDVFLD--------IDWQGAQQIRQKMP----HARSIFILPPSKIELD  144 (219)
T ss_dssp             ETTEE-EE-----EE---HHH---HHHHHTTTCEEEEE--------CCHHHHHHHHHHCT----TCEEEEEECSSHHHHH
T ss_pred             HHhcc-CC-----CC---HHH---HHHHHhcCCeEEEE--------ECHHHHHHHHHHcc----CCEEEEEECCCHHHHH
Confidence            11100 00     01   111   12233457999999        67665 55555543    4799999999999887


Q ss_pred             h
Q psy2071         224 Q  224 (302)
Q Consensus       224 ~  224 (302)
                      +
T Consensus       145 ~  145 (219)
T 1s96_A          145 R  145 (219)
T ss_dssp             H
T ss_pred             H
Confidence            6

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.36  E-value=1.4e-13  Score=124.19  Aligned_cols=136  Identities=15%  Similarity=0.116  Sum_probs=83.5

Q ss_pred             CEEEEEccCCCCccchhhhhhhcc--------cccCCCEEEeecCchhh------------------hHHHHHHHh---h
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEY--------SKSVGAKAVACTQPRRV------------------AAMSVAQRV---S  128 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~--------~~~~G~~~i~~~~~~~~------------------~~~~~~~~~---~  128 (302)
                      ++++|+|+||||||||++.++|..        .|+.|.+.+++......                  ........+   .
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~   84 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL   84 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence            589999999999999999999986        78999999887653221                  001111111   1


Q ss_pred             h----hhccccccceeeee------------------------eecCCCCccccccccCHHHHHHHhccccCCCCCcEEE
Q psy2071         129 E----EMDCQLGQEVGYSI------------------------RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVIL  180 (302)
Q Consensus       129 ~----~~~~~~~~~v~~~~------------------------~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lli  180 (302)
                      +    .+..++.+++++..                        ..-+..........+|+||+||+..+++++.+|+++ 
T Consensus        85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~-  163 (318)
T 1nij_A           85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA-  163 (318)
T ss_dssp             HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTC-
T ss_pred             hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccC-
Confidence            1    11334444444321                        000000111122358999999999999999999987 


Q ss_pred             EcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         181 LDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       181 LDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                       ||   |    .    .+.+.++..+ .+.+|+++||+...+..++|
T Consensus       164 -de---~----~----~l~~~l~~l~-~~~~ii~~sh~~~~~~~l~~  197 (318)
T 1nij_A          164 -GE---A----E----KLHERLARIN-ARAPVYTVTHGDIDLGLLFN  197 (318)
T ss_dssp             -SC---T----H----HHHHHHHHHC-SSSCEEECCSSCCCGGGGSC
T ss_pred             -CH---H----H----HHHHHHHHhC-CCCeEEEecccCCCHHHHhC
Confidence             98   7    2    3334444333 36789999997544444443

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.36  E-value=2e-15  Score=138.91  Aligned_cols=162  Identities=9%  Similarity=0.099  Sum_probs=95.1

Q ss_pred             HHHHHHHHHh--CCEEEEEccCCCCccchhhhhhhcccccC----CCEEEe----ecC----chhhhHHHHHHHhhhhhc
Q psy2071          67 RTEFMTLLAQ--NQCIVLVGETGSGKTTQIPQWCVEYSKSV----GAKAVA----CTQ----PRRVAAMSVAQRVSEEMD  132 (302)
Q Consensus        67 ~~~i~~~i~~--g~i~~liG~nGsGKSTll~~i~g~~~~~~----G~~~i~----~~~----~~~~~~~~~~~~~~~~~~  132 (302)
                      ...+...|.+  |+.++|+|+||||||||+++|+|++.|+.    |.+.+.    +..    ......+....+-.....
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~  237 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYA  237 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHH
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHH
Confidence            3467888999  99999999999999999999999999998    877653    211    111111111111111122


Q ss_pred             cccccceeeeeeecCCCCccccccccCHHHHHHHhccccC-CCCCcEEEEcCCCCC------CcchHHHH-HHHHHHHHH
Q psy2071         133 CQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPM-LENYQVILLDEAHER------TLATDILM-GVLKEVIKQ  204 (302)
Q Consensus       133 ~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al-~~~p~lliLDE~~~p------~~~lD~~~-~~l~~ll~~  204 (302)
                      .++.+++.+.    ......+....+++|++++..+++++ ..+|+++||||...|      +.++|+.. ..+.+++.+
T Consensus       238 ~t~~~nl~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~  313 (365)
T 1lw7_A          238 VRHSHKIAFI----DTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKK  313 (365)
T ss_dssp             HHHCSSEEEE----SSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHH
T ss_pred             HhccCCEEEE----eCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHH
Confidence            3444554332    11222333445667777777776665 469999999983233      34566433 334444432


Q ss_pred             -cCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         205 -RADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       205 -~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                       ..+.+.++++++|. ....++++.+.+++
T Consensus       314 l~~~~~~~ililde~-~~~~r~~~~i~~i~  342 (365)
T 1lw7_A          314 LLDKYKVPYIEIESP-SYLDRYNQVKAVIE  342 (365)
T ss_dssp             HHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred             HHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence             22336677777875 46667787776665

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.36  E-value=3.2e-14  Score=139.05  Aligned_cols=130  Identities=12%  Similarity=0.039  Sum_probs=74.1

Q ss_pred             EEEEEccCCCCccchhhhhhhcccc-cCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSK-SVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKY  157 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~-~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  157 (302)
                      .++|+|+||||||||+++|+|+..| ++|.+.+.|.+.......         ........++|..+........+...+
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~---------~~~~~~~~i~~v~Q~~~l~~~~tv~e~  117 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLV---------NEDKWRGKVSYQDYEIEISDASEVEKE  117 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECS---------SSSCCEEEESCC---CCCCCHHHHHTT
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCC---------ccccceeEEeeecccccCCCHHHHHHH
Confidence            4999999999999999999999988 799988877653110000         000112233333221111111111111


Q ss_pred             cC-----------HHHHHHHhccccCCCCCcEEEEcCCCCC------CcchHHHH-HHHHHHHHHc--CCCcEEEEEEec
Q psy2071         158 MT-----------DGMLLREGMSDPMLENYQVILLDEAHER------TLATDILM-GVLKEVIKQR--ADLKLVIMSATL  217 (302)
Q Consensus       158 lS-----------~G~~qr~~la~al~~~p~lliLDE~~~p------~~~lD~~~-~~l~~ll~~~--~~~~~~ii~~th  217 (302)
                      +.           +...+.+.++.+....|+++|+||   |      ++++|+.. ..+.+++..+  ...+++++++||
T Consensus       118 i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDe---PGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~  194 (608)
T 3szr_A          118 INKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDL---PGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPS  194 (608)
T ss_dssp             HHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEEC---CC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEES
T ss_pred             HHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeC---CCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEec
Confidence            10           011233455666678899999999   8      99999766 6777888763  344789999999


Q ss_pred             CHH
Q psy2071         218 DAG  220 (302)
Q Consensus       218 d~~  220 (302)
                      |++
T Consensus       195 ~~d  197 (608)
T 3szr_A          195 NVD  197 (608)
T ss_dssp             SSC
T ss_pred             cch
Confidence            976

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.34  E-value=5.2e-13  Score=114.97  Aligned_cols=150  Identities=12%  Similarity=0.139  Sum_probs=77.5

Q ss_pred             HHHHH-HHHHhCCEEEEEccCCCCccchhhhhhh--cccc-----cCCCEEEeecCchhh-hHHHHHHHhhhhhcccccc
Q psy2071          67 RTEFM-TLLAQNQCIVLVGETGSGKTTQIPQWCV--EYSK-----SVGAKAVACTQPRRV-AAMSVAQRVSEEMDCQLGQ  137 (302)
Q Consensus        67 ~~~i~-~~i~~g~i~~liG~nGsGKSTll~~i~g--~~~~-----~~G~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~  137 (302)
                      ++.+. --|++|++++|+||||||||||+.++++  ..++     ..|.+++.+...... ........+.... ..+.+
T Consensus        13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~-~~~~~   91 (243)
T 1n0w_A           13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSG-SDVLD   91 (243)
T ss_dssp             HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCH-HHHHH
T ss_pred             HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCH-HHHhh
Confidence            44433 2478999999999999999999999999  4544     345667766552111 1111111111100 00112


Q ss_pred             ceeeeeeecCCCCccccccccCHHHHHH-HhccccC--CCCCcEEEEcCCCCCCcchHHH-------------H-HHHHH
Q psy2071         138 EVGYSIRFEDCSSPKTVLKYMTDGMLLR-EGMSDPM--LENYQVILLDEAHERTLATDIL-------------M-GVLKE  200 (302)
Q Consensus       138 ~v~~~~~~~~~~~~~~~~~~lS~G~~qr-~~la~al--~~~p~lliLDE~~~p~~~lD~~-------------~-~~l~~  200 (302)
                      ++.+.             ...+..+... +..+..+  ..+|++|++||   ++..+|..             . ..+..
T Consensus        92 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~---~~~~~~~~~~~~~~~~~r~~~~~~~~~~  155 (243)
T 1n0w_A           92 NVAYA-------------RAFNTDHQTQLLYQASAMMVESRYALLIVDS---ATALYRTDYSGRGELSARQMHLARFLRM  155 (243)
T ss_dssp             TEEEE-------------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEET---SSGGGC-------CHHHHHHHHHHHHHH
T ss_pred             CeEEE-------------ecCCHHHHHHHHHHHHHHHhcCCceEEEEeC---chHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            22111             1122232221 1111112  25899999999   77777642             1 22333


Q ss_pred             HHHHcCCCcEEEEEEecCHHHHHh-------------------hccCCCeee
Q psy2071         201 VIKQRADLKLVIMSATLDAGKFQQ-------------------YFDNAPLMN  233 (302)
Q Consensus       201 ll~~~~~~~~~ii~~thd~~~~~~-------------------~~d~~~~l~  233 (302)
                      +....++.+++|++++|....+..                   +||.+++|+
T Consensus       156 l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~  207 (243)
T 1n0w_A          156 LLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLR  207 (243)
T ss_dssp             HHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEE
T ss_pred             HHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEE
Confidence            333333458899999997665443                   788888887

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.32  E-value=9.6e-13  Score=105.70  Aligned_cols=87  Identities=15%  Similarity=0.181  Sum_probs=58.8

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcccccCC--CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKT  153 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  153 (302)
                      +|++++|+||||||||||++++++...+ .|  .+++.+.+...                                   .
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~-----------------------------------~   78 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL-----------------------------------T   78 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC-----------------------------------C
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH-----------------------------------H
Confidence            8999999999999999999999998876 45  33333221100                                   0


Q ss_pred             cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEEEecC
Q psy2071         154 VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLV-IMSATLD  218 (302)
Q Consensus       154 ~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~-ii~~thd  218 (302)
                                       +++.+|++||+||   ++...+.....+.++++.+.+.+.+ +|++||.
T Consensus        79 -----------------~~~~~~~lLilDE---~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~  124 (149)
T 2kjq_A           79 -----------------DAAFEAEYLAVDQ---VEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY  124 (149)
T ss_dssp             -----------------GGGGGCSEEEEES---TTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             -----------------HHHhCCCEEEEeC---ccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence                             2356799999999   5553333345566776655544555 6667773

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.32  E-value=4.1e-13  Score=134.50  Aligned_cols=79  Identities=14%  Similarity=0.059  Sum_probs=70.3

Q ss_pred             ccccccccCHHHHHHHhccccCCCCCc--EEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         151 PKTVLKYMTDGMLLREGMSDPMLENYQ--VILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       151 ~~~~~~~lS~G~~qr~~la~al~~~p~--lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                      .++.+..|||||+||++||++|+.+|+  ++||||   ||++||+.. ..+.++++.+.+.|.|||+++||++.+ ..||
T Consensus       373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDE---PT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l-~~aD  448 (842)
T 2vf7_A          373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDE---PSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVI-RRAD  448 (842)
T ss_dssp             TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEEC---TTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHH-TTCS
T ss_pred             ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeC---ccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCC
Confidence            467788999999999999999999994  999999   999999766 778888887777899999999999966 5799


Q ss_pred             CCCeee
Q psy2071         228 NAPLMN  233 (302)
Q Consensus       228 ~~~~l~  233 (302)
                      ++++|.
T Consensus       449 ~ii~lg  454 (842)
T 2vf7_A          449 WLVDVG  454 (842)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999994

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.31  E-value=2.4e-13  Score=112.21  Aligned_cols=106  Identities=17%  Similarity=0.116  Sum_probs=66.7

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccCCC-EEE-eecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCC
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGA-KAV-ACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSS  150 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~-~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  150 (302)
                      .+.+|+.++|+||||||||||++++++.+.+..|. +.+ ...+        ....+.....            ...   
T Consensus        34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~------------~~~---   90 (180)
T 3ec2_A           34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD--------LIFRLKHLMD------------EGK---   90 (180)
T ss_dssp             CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH--------HHHHHHHHHH------------HTC---
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH--------HHHHHHHHhc------------Cch---
Confidence            34679999999999999999999999999877773 222 1111        1111100000            000   


Q ss_pred             ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc-chHHHH-HHHHHHHHHcCCCcEEEEEEecCH
Q psy2071         151 PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL-ATDILM-GVLKEVIKQRADLKLVIMSATLDA  219 (302)
Q Consensus       151 ~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~-~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~  219 (302)
                      ..        ....+       +.+|++|||||   ++. ++|+.. ..+.+++..+.+.+.++|++||..
T Consensus        91 ~~--------~~~~~-------~~~~~llilDE---~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~  143 (180)
T 3ec2_A           91 DT--------KFLKT-------VLNSPVLVLDD---LGSERLSDWQRELISYIITYRYNNLKSTIITTNYS  143 (180)
T ss_dssp             CS--------HHHHH-------HHTCSEEEEET---CSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred             HH--------HHHHH-------hcCCCEEEEeC---CCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            00        00111       23899999999   663 777666 677788876655577788888854

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.28  E-value=1.4e-12  Score=131.36  Aligned_cols=79  Identities=14%  Similarity=0.092  Sum_probs=70.7

Q ss_pred             ccccccccCHHHHHHHhccccCCCCC--cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071         151 PKTVLKYMTDGMLLREGMSDPMLENY--QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       151 ~~~~~~~lS~G~~qr~~la~al~~~p--~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d  227 (302)
                      .++.+..|||||+||++||++|..+|  +++||||   ||++||+.. ..+.++++.+++.|.|||+++||++++. .||
T Consensus       498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDE---PTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~AD  573 (972)
T 2r6f_A          498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDE---PSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AAD  573 (972)
T ss_dssp             SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEEC---TTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCS
T ss_pred             cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeC---cccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCC
Confidence            46778899999999999999999985  9999999   999999876 7788888877788999999999999875 699


Q ss_pred             CCCeee
Q psy2071         228 NAPLMN  233 (302)
Q Consensus       228 ~~~~l~  233 (302)
                      ++++|.
T Consensus       574 rIi~Lg  579 (972)
T 2r6f_A          574 YLIDIG  579 (972)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999993

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.26  E-value=6e-15  Score=124.96  Aligned_cols=140  Identities=10%  Similarity=-0.047  Sum_probs=78.5

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh--hHHHHHHHhhhhhcc--c-cccceeeee-eecC
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV--AAMSVAQRVSEEMDC--Q-LGQEVGYSI-RFED  147 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~--~~~~~~~~~~~~~~~--~-~~~~v~~~~-~~~~  147 (302)
                      .++|++++|+|+|||||||++++|+|++.|   .+.+...+....  .......+....+..  . ..+.+...+ .+..
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   79 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLR   79 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence            468999999999999999999999998875   343333322110  000010110000000  0 000000000 0000


Q ss_pred             CCCccccccccCHHHH----HHHhccccCCCCCcEEEEcCCCCCCcc-------hHHHH-HHHHHHHHH-cCCCcEEEEE
Q psy2071         148 CSSPKTVLKYMTDGML----LREGMSDPMLENYQVILLDEAHERTLA-------TDILM-GVLKEVIKQ-RADLKLVIMS  214 (302)
Q Consensus       148 ~~~~~~~~~~lS~G~~----qr~~la~al~~~p~lliLDE~~~p~~~-------lD~~~-~~l~~ll~~-~~~~~~~ii~  214 (302)
                      ..........+|+|++    ||++++++++.+|.++++||   |+.+       +|... ..+.+.+.+ ..+.|.+++.
T Consensus        80 ~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de---~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~  156 (211)
T 3asz_A           80 GLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPK---ELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEG  156 (211)
T ss_dssp             TCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSH---HHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             CCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCH---HHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHH
Confidence            1111223456888864    67889999999999999999   8888       78544 444454443 2334677777


Q ss_pred             EecCH
Q psy2071         215 ATLDA  219 (302)
Q Consensus       215 ~thd~  219 (302)
                      ++|+.
T Consensus       157 ~~~~~  161 (211)
T 3asz_A          157 VVAQY  161 (211)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88874

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.26  E-value=7.2e-12  Score=102.95  Aligned_cols=78  Identities=14%  Similarity=0.038  Sum_probs=64.1

Q ss_pred             ccccccccCHHHHHHHhccccCCC----CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhh
Q psy2071         151 PKTVLKYMTDGMLLREGMSDPMLE----NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQY  225 (302)
Q Consensus       151 ~~~~~~~lS~G~~qr~~la~al~~----~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~  225 (302)
                      ....+..|||||+||++||++++.    .|+++||||   |++++|+.. ..+.+++...... .++|++||+.. +..+
T Consensus        58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDE---p~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~~-~~~~  132 (173)
T 3kta_B           58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDE---IDAHLDDANVKRVADLIKESSKE-SQFIVITLRDV-MMAN  132 (173)
T ss_dssp             SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEES---TTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCHH-HHTT
T ss_pred             cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECC---CccCCCHHHHHHHHHHHHHhccC-CEEEEEEecHH-HHHh
Confidence            345678899999999999999974    469999999   999999877 7788888766543 46777799975 4579


Q ss_pred             ccCCCeee
Q psy2071         226 FDNAPLMN  233 (302)
Q Consensus       226 ~d~~~~l~  233 (302)
                      ||+++.+.
T Consensus       133 ad~i~~v~  140 (173)
T 3kta_B          133 ADKIIGVS  140 (173)
T ss_dssp             CSEEEEEE
T ss_pred             CCEEEEEE
Confidence            99998876

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.23  E-value=2e-12  Score=124.20  Aligned_cols=75  Identities=15%  Similarity=0.038  Sum_probs=65.9

Q ss_pred             ccccc-CHHHHHHHhccccCCCCC--cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCC
Q psy2071         154 VLKYM-TDGMLLREGMSDPMLENY--QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNA  229 (302)
Q Consensus       154 ~~~~l-S~G~~qr~~la~al~~~p--~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~  229 (302)
                      .+..| ||||+||++||++|+.+|  ++|||||   |++++|+.. ..+.+++....+ +.+||++||+++.+. +||++
T Consensus       393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDE---p~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~  467 (517)
T 4ad8_A          393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDE---VDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHH  467 (517)
T ss_dssp             BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECS---CSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEE
T ss_pred             cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeC---CcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEE
Confidence            44557 999999999999999999  9999999   999999777 777788776655 789999999998775 79999


Q ss_pred             Ceee
Q psy2071         230 PLMN  233 (302)
Q Consensus       230 ~~l~  233 (302)
                      ++|+
T Consensus       468 ~~~~  471 (517)
T 4ad8_A          468 YKVE  471 (517)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9997

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.21  E-value=1.1e-13  Score=115.25  Aligned_cols=149  Identities=9%  Similarity=0.013  Sum_probs=81.3

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh---hHH----------HHHHHhhhhhccccccceeeee
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV---AAM----------SVAQRVSEEMDCQLGQEVGYSI  143 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~---~~~----------~~~~~~~~~~~~~~~~~v~~~~  143 (302)
                      |++++|+|||||||||+++.|++   +..|.+.+.+......   +..          .....+...............+
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il   78 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVL   78 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence            67999999999999999999986   5667788876543210   000          0000000000000000000111


Q ss_pred             eecCCCCcccccccc--CHHHHHHHhccc------cCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEE
Q psy2071         144 RFEDCSSPKTVLKYM--TDGMLLREGMSD------PMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMS  214 (302)
Q Consensus       144 ~~~~~~~~~~~~~~l--S~G~~qr~~la~------al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~  214 (302)
                      ...........+..+  |+|+++++.++.      +++.++....+|+      ++|+.. .. .+.+......+.+++.
T Consensus        79 d~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~------~ld~~~~~~-~~~~~~~~~~~~~ii~  151 (189)
T 2bdt_A           79 DYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE------QMGERCLEL-VEEFESKGIDERYFYN  151 (189)
T ss_dssp             ESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----------CGGGGHH-HHHHHHTTCCTTSEEE
T ss_pred             eeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc------cCCHHHHHH-HHHHhhcCCCccEEEe
Confidence            110000011122334  788888877776      6777777666665      344322 33 4444444444678888


Q ss_pred             EecC-HHHHHhhccCCCeeeecCcC
Q psy2071         215 ATLD-AGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       215 ~thd-~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +||. ++.+.++||+|.  + .|+.
T Consensus       152 tsh~~~~~~e~~~~~i~--~-~g~~  173 (189)
T 2bdt_A          152 TSHLQPTNLNDIVKNLK--T-NPRF  173 (189)
T ss_dssp             CSSSCGGGHHHHHHHHH--H-CGGG
T ss_pred             CCCCChhhHHHHHHHHh--h-CCcE
Confidence            8998 999999999987  4 5653

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.19  E-value=3.1e-11  Score=107.73  Aligned_cols=136  Identities=20%  Similarity=0.231  Sum_probs=82.7

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKT  153 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  153 (302)
                      .+|++++|+|+|||||||++..|++.+.+..| .+.+.+.++.+.+............+        ...  ..      
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~g--------l~~--~~------  166 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQ--------APL--EV------  166 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTT--------CCC--CB------
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcC--------CCe--Ee------
Confidence            46899999999999999999999999998788 78888777765544333322221111        100  00      


Q ss_pred             cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEE-EecCHHHHHhhccCCCee
Q psy2071         154 VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMS-ATLDAGKFQQYFDNAPLM  232 (302)
Q Consensus       154 ~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~-~thd~~~~~~~~d~~~~l  232 (302)
                         ..+ +...+.++++  +.+|+++|+|.++...... ..+..+.+++......++++++ +||+.+.+.++++++..+
T Consensus       167 ---~~~-~~~l~~al~~--~~~~dlvIiDT~G~~~~~~-~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l  239 (296)
T 2px0_A          167 ---CYT-KEEFQQAKEL--FSEYDHVFVDTAGRNFKDP-QYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSV  239 (296)
T ss_dssp             ---CSS-HHHHHHHHHH--GGGSSEEEEECCCCCTTSH-HHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSS
T ss_pred             ---cCC-HHHHHHHHHH--hcCCCEEEEeCCCCChhhH-HHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcC
Confidence               011 2234556664  3899999999754332211 2222333333211122444444 699999999999887654


Q ss_pred             e
Q psy2071         233 N  233 (302)
Q Consensus       233 ~  233 (302)
                      .
T Consensus       240 ~  240 (296)
T 2px0_A          240 P  240 (296)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.19  E-value=2e-11  Score=109.35  Aligned_cols=110  Identities=21%  Similarity=0.256  Sum_probs=76.4

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccc
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKT  153 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  153 (302)
                      ..++++++|+|+|||||||++..+++.+.+..|.+.+.+.+..+.++..........        .+..+          
T Consensus       101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~--------~gl~~----------  162 (306)
T 1vma_A          101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGER--------VGATV----------  162 (306)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHH--------HTCEE----------
T ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHH--------cCCcE----------
Confidence            457889999999999999999999999998888999988887766544332222111        11111          


Q ss_pred             cccccCHHHHHHH---hccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHH
Q psy2071         154 VLKYMTDGMLLRE---GMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIK  203 (302)
Q Consensus       154 ~~~~lS~G~~qr~---~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~  203 (302)
                       +...|+|+.+++   ++++++..+|+++|+||++. ....+.++..+.++..
T Consensus       163 -~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~-~~~~~~l~~eL~~l~~  213 (306)
T 1vma_A          163 -ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR-LHTKKNLMEELRKVHR  213 (306)
T ss_dssp             -ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC-CSCHHHHHHHHHHHHH
T ss_pred             -EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc-hhhHHHHHHHHHHHHH
Confidence             123467888887   78888999999999999643 2233344444544433

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.19  E-value=1.5e-11  Score=111.22  Aligned_cols=130  Identities=15%  Similarity=0.115  Sum_probs=78.3

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhh-------------cccccccee
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEM-------------DCQLGQEVG  140 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~v~  140 (302)
                      .++|++++|+|||||||||+++.|+|++.|+.|.+.+.+.+..+.+...+........             ..++.+++.
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~  205 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ  205 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence            3679999999999999999999999999999999999998876655433222111111             111222221


Q ss_pred             eee---------eecCCC-CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcE
Q psy2071         141 YSI---------RFEDCS-SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKL  210 (302)
Q Consensus       141 ~~~---------~~~~~~-~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~  210 (302)
                      +..         ...... .....       +.+...+++++..++.+++||.   .+ +.|.. ..+..+-+   ..++
T Consensus       206 ~~~~~~~d~vliDtaG~~~~~~~l-------~~eL~~i~ral~~de~llvLDa---~t-~~~~~-~~~~~~~~---~~~i  270 (328)
T 3e70_C          206 HAKARGIDVVLIDTAGRSETNRNL-------MDEMKKIARVTKPNLVIFVGDA---LA-GNAIV-EQARQFNE---AVKI  270 (328)
T ss_dssp             HHHHHTCSEEEEEECCSCCTTTCH-------HHHHHHHHHHHCCSEEEEEEEG---GG-TTHHH-HHHHHHHH---HSCC
T ss_pred             HHHhccchhhHHhhccchhHHHHH-------HHHHHHHHHHhcCCCCEEEEec---HH-HHHHH-HHHHHHHH---hcCC
Confidence            110         000000 01111       2222347788888999999997   43 44433 23333322   2478


Q ss_pred             EEEEEecC
Q psy2071         211 VIMSATLD  218 (302)
Q Consensus       211 ~ii~~thd  218 (302)
                      +++++||.
T Consensus       271 t~iilTKl  278 (328)
T 3e70_C          271 DGIILTKL  278 (328)
T ss_dssp             CEEEEECG
T ss_pred             CEEEEeCc
Confidence            88888994

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.19  E-value=2.7e-12  Score=104.00  Aligned_cols=51  Identities=16%  Similarity=0.021  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP  115 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~  115 (302)
                      ..+++++++.+++|++++|+||||||||||+++|+|++ |++|.+.+.+...
T Consensus        20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i   70 (158)
T 1htw_A           20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL   70 (158)
T ss_dssp             HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred             HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence            34688999999999999999999999999999999999 9999988776543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.18  E-value=3.9e-13  Score=125.31  Aligned_cols=118  Identities=12%  Similarity=0.130  Sum_probs=60.7

Q ss_pred             EEEEccCCCCccchhhhhhhcccccCC--CEEEeecCchhhhHH-HHHHHhhhhhccccccceeeeeeecCCCCccc---
Q psy2071          80 IVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVACTQPRRVAAM-SVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKT---  153 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---  153 (302)
                      ++|+|+||||||||+++++|...+..|  .+.+........... ...+........++.+++++............   
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~  113 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVID  113 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHH
Confidence            399999999999999999998875444  221111110000000 00011111123456666665432211000000   


Q ss_pred             -cccccCHHHHHHHhccccCCCCCc---EEEEcCCCCCC-cchHHHH-HHHHH
Q psy2071         154 -VLKYMTDGMLLREGMSDPMLENYQ---VILLDEAHERT-LATDILM-GVLKE  200 (302)
Q Consensus       154 -~~~~lS~G~~qr~~la~al~~~p~---lliLDE~~~p~-~~lD~~~-~~l~~  200 (302)
                       .-..++.++++|++|+++++.+|+   +|++||   |+ .++|+.- ..+..
T Consensus       114 ~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~lde---Pt~~~L~~~d~~~lk~  163 (418)
T 2qag_C          114 YIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIA---PSGHGLKPLDIEFMKR  163 (418)
T ss_dssp             HHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECC---C-CCSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEec---CcccCCCHHHHHHHHH
Confidence             012356778889999999999999   999999   98 6888765 34443

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.14  E-value=1.3e-12  Score=107.36  Aligned_cols=101  Identities=15%  Similarity=0.050  Sum_probs=56.1

Q ss_pred             CEEEEEccCCCCccchhhhhhhccccc---CCCEEEeecCchhhh---HHHHH-HHhhhhhccccccceeeeee------
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEYSKS---VGAKAVACTQPRRVA---AMSVA-QRVSEEMDCQLGQEVGYSIR------  144 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~~~~---~G~~~i~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~v~~~~~------  144 (302)
                      ++++|+|+||||||||++.|++++.|+   .|.+.+++.......   ..... ..+.........+...+...      
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~~~   82 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEEG   82 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChhhh
Confidence            589999999999999999999999998   788888876533221   01111 11110000000001111000      


Q ss_pred             --e----cC-CCCccc-cccccCHHHHHHHhccccCCCCCcE
Q psy2071         145 --F----ED-CSSPKT-VLKYMTDGMLLREGMSDPMLENYQV  178 (302)
Q Consensus       145 --~----~~-~~~~~~-~~~~lS~G~~qr~~la~al~~~p~l  178 (302)
                        .    .. ....++ ..+.||+||+||+++|||++.+|++
T Consensus        83 a~l~~~i~~~l~g~dt~i~EglSgGq~qri~lARall~~p~i  124 (171)
T 2f1r_A           83 NDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKPEEVEHF  124 (171)
T ss_dssp             TCHHHHHHHHTTTCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred             hCHHHHHHhhCCCCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence              0    00 011222 2334999999999999999999876

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.13  E-value=1.5e-11  Score=116.04  Aligned_cols=49  Identities=22%  Similarity=0.253  Sum_probs=42.4

Q ss_pred             HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh
Q psy2071          70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV  118 (302)
Q Consensus        70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~  118 (302)
                      +++.+.+|++++|+|+||||||||+++|+|++.++.|.+.+.+.+..+.
T Consensus       286 Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~  334 (503)
T 2yhs_A          286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA  334 (503)
T ss_dssp             CCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCH
T ss_pred             ceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccch
Confidence            3445678999999999999999999999999999999999987766543

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.11  E-value=4.5e-12  Score=105.28  Aligned_cols=103  Identities=14%  Similarity=0.090  Sum_probs=61.3

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-------hH--------HHHHHHhhhhhcccccc
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-------AA--------MSVAQRVSEEMDCQLGQ  137 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-------~~--------~~~~~~~~~~~~~~~~~  137 (302)
                      .+++|++++|+|+|||||||++++|++.  ++.|.+.+.+.+....       ..        ..+...+..... ... 
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~-   80 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAG-RYA-   80 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHH-HHh-
Confidence            5789999999999999999999999997  6778888876432110       00        001111100000 000 


Q ss_pred             ceeeeeeecCC----C---Cc--cccccccCHHHHHHHhccccCCCCCcEE
Q psy2071         138 EVGYSIRFEDC----S---SP--KTVLKYMTDGMLLREGMSDPMLENYQVI  179 (302)
Q Consensus       138 ~v~~~~~~~~~----~---~~--~~~~~~lS~G~~qr~~la~al~~~p~ll  179 (302)
                      .-+.....+..    .   ..  +..+..+|+|++|+++++|++..+|+++
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l  131 (191)
T 1zp6_A           81 KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL  131 (191)
T ss_dssp             HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred             ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence            00111111110    0   00  2234679999999999999999998765

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.08  E-value=1.2e-11  Score=103.94  Aligned_cols=128  Identities=10%  Similarity=0.012  Sum_probs=69.8

Q ss_pred             HHHHhCCEEEEEccCCCCccchhhhhhhcc-----cccCCCEEEee------------cCch---h------hhHHHHHH
Q psy2071          72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEY-----SKSVGAKAVAC------------TQPR---R------VAAMSVAQ  125 (302)
Q Consensus        72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~-----~~~~G~~~i~~------------~~~~---~------~~~~~~~~  125 (302)
                      +.+.+|..++|+|+||||||||++.++|..     .|+.|...+.+            +.-.   .      ........
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            667899999999999999999999999987     67777543211            1000   0      00000011


Q ss_pred             Hhhhhhccccccceeeeeee-----------------cCCC--CccccccccCHHHHHH-HhccccCCCCCcEEEEcCCC
Q psy2071         126 RVSEEMDCQLGQEVGYSIRF-----------------EDCS--SPKTVLKYMTDGMLLR-EGMSDPMLENYQVILLDEAH  185 (302)
Q Consensus       126 ~~~~~~~~~~~~~v~~~~~~-----------------~~~~--~~~~~~~~lS~G~~qr-~~la~al~~~p~lliLDE~~  185 (302)
                      .+.+....  ...+.+....                 ....  ...+....+|+|++|+ +..+++++.+|..+++||  
T Consensus       101 ~~~~~~~~--~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~--  176 (210)
T 1pui_A          101 EYLEKRQS--LQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE--  176 (210)
T ss_dssp             HHHHHCTT--EEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE--
T ss_pred             HHHHhhhc--ccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceE--
Confidence            11110000  0000000000                 0000  0123456699999999 788999999999999999  


Q ss_pred             CCCcchHHHH-HHHHHHHHH
Q psy2071         186 ERTLATDILM-GVLKEVIKQ  204 (302)
Q Consensus       186 ~p~~~lD~~~-~~l~~ll~~  204 (302)
                       |++++|... ..+.+.+..
T Consensus       177 -~~Sal~~~~~~~l~~~l~~  195 (210)
T 1pui_A          177 -TFSSLKKQGVDKLRQKLDT  195 (210)
T ss_dssp             -ECBTTTTBSHHHHHHHHHH
T ss_pred             -EEeecCCCCHHHHHHHHHH
Confidence             999998644 445555443

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.06  E-value=6.3e-11  Score=109.84  Aligned_cols=48  Identities=13%  Similarity=0.159  Sum_probs=34.5

Q ss_pred             HHHHH-HHHHhCCEEEEEccCCCCccchhhhhh--hcccccCC-----CEEEeecC
Q psy2071          67 RTEFM-TLLAQNQCIVLVGETGSGKTTQIPQWC--VEYSKSVG-----AKAVACTQ  114 (302)
Q Consensus        67 ~~~i~-~~i~~g~i~~liG~nGsGKSTll~~i~--g~~~~~~G-----~~~i~~~~  114 (302)
                      ++.+. --|++|++++|+||||||||||+.+++  +..+++.|     .+++.+..
T Consensus       167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence            44433 346899999999999999999999654  55555443     56666654

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.05  E-value=3.2e-12  Score=108.12  Aligned_cols=102  Identities=14%  Similarity=0.044  Sum_probs=62.6

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhccccc---CCCEEEeecCchhhhHHHHH--H--Hhh----------hhhccccc
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKS---VGAKAVACTQPRRVAAMSVA--Q--RVS----------EEMDCQLG  136 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~---~G~~~i~~~~~~~~~~~~~~--~--~~~----------~~~~~~~~  136 (302)
                      .++|++++|+||||||||||+++|+|++.|.   .|.+.+++............  .  .+.          .......+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~   98 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQ   98 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcC
Confidence            3679999999999999999999999999864   45555554432111100000  0  000          00011222


Q ss_pred             cceeeeeeecCCCCccccccccCHHHHHHHhcc-ccCCCCCcEEEEcC
Q psy2071         137 QEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMS-DPMLENYQVILLDE  183 (302)
Q Consensus       137 ~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la-~al~~~p~lliLDE  183 (302)
                      +++.+....        ....+|+|++|+++++ ++++.++.++++||
T Consensus        99 ~~i~~p~~d--------~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de  138 (208)
T 3c8u_A           99 ERVIYPLFD--------RARDIAIAGAAEVGPECRVAIIEGNYLLFDA  138 (208)
T ss_dssp             SCEEEEEEE--------TTTTEEEEEEEEECTTCCEEEEEESSTTBCS
T ss_pred             CceecccCC--------ccccCCCCCceEEcCCCcEEEECCceeccCC
Confidence            333333211        1123588999999998 88888988888999

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.04  E-value=9.5e-11  Score=100.85  Aligned_cols=162  Identities=9%  Similarity=-0.007  Sum_probs=77.6

Q ss_pred             HHHH-HHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccc-cccceeeeee
Q psy2071          67 RTEF-MTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQ-LGQEVGYSIR  144 (302)
Q Consensus        67 ~~~i-~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~  144 (302)
                      ++++ .--+++|++++|+|+|||||||++.+++....+..+.+.+................+....... ...++.+.-.
T Consensus        12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~   91 (247)
T 2dr3_A           12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDA   91 (247)
T ss_dssp             HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEEC
T ss_pred             HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEec
Confidence            3444 3357899999999999999999977766544444445555444322111111111111000000 0001110000


Q ss_pred             ----ecCCCCccccc--cccCHHHHHHHhccccCC--CCCcEEEEcCCCCCCcch--HH--HHHHHHHHHHHcCCCcEEE
Q psy2071         145 ----FEDCSSPKTVL--KYMTDGMLLREGMSDPML--ENYQVILLDEAHERTLAT--DI--LMGVLKEVIKQRADLKLVI  212 (302)
Q Consensus       145 ----~~~~~~~~~~~--~~lS~G~~qr~~la~al~--~~p~lliLDE~~~p~~~l--D~--~~~~l~~ll~~~~~~~~~i  212 (302)
                          +..........  ...+-.+  ....++.++  .+|+++++|+   ++...  |+  ....+..+.+..++.++++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~vviD~---~~~l~~~~~~~~~~~l~~l~~~~~~~~~~v  166 (247)
T 2dr3_A           92 FTAGIGKSKEYEKYIVHDLTDIRE--FIEVLRQAIRDINAKRVVVDS---VTTLYINKPAMARSIILQLKRVLAGTGCTS  166 (247)
T ss_dssp             STTTTCC--CCCSCBCSCCSSHHH--HHHHHHHHHHHHTCCEEEEET---SGGGTTTCGGGHHHHHHHHHHHHHHTTCEE
T ss_pred             chhhcccccccccccccCccCHHH--HHHHHHHHHHHhCCCEEEECC---chHhhcCCHHHHHHHHHHHHHHHHHCCCeE
Confidence                00000000000  0011111  111111111  4799999999   44433  32  1244444444444568899


Q ss_pred             EEEecCHHH--------HHhhccCCCeee
Q psy2071         213 MSATLDAGK--------FQQYFDNAPLMN  233 (302)
Q Consensus       213 i~~thd~~~--------~~~~~d~~~~l~  233 (302)
                      ++++|....        +.++||.++.|+
T Consensus       167 i~~~h~~~~~~~~~~~~~~~~~D~vi~L~  195 (247)
T 2dr3_A          167 IFVSQVSVGERGFGGPGVEHGVDGIIRLD  195 (247)
T ss_dssp             EEEEECC----CCC-CCHHHHSSEEEEEE
T ss_pred             EEEecCCCCcccccccccceeEEEEEEEE
Confidence            999997765        578899998887

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.03  E-value=2.5e-10  Score=103.68  Aligned_cols=51  Identities=18%  Similarity=0.201  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP  115 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~  115 (302)
                      .+++++++.+.+|++++|+|+||||||||+++++|++.|+.|.+.+.+.++
T Consensus        43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~   93 (337)
T 2qm8_A           43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP   93 (337)
T ss_dssp             HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred             HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcC
Confidence            468899999999999999999999999999999999999999999988765

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.02  E-value=1.7e-10  Score=106.07  Aligned_cols=80  Identities=16%  Similarity=0.243  Sum_probs=65.5

Q ss_pred             ccccccCHHHHHHH------hccccCCCC-CcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071         153 TVLKYMTDGMLLRE------GMSDPMLEN-YQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ  224 (302)
Q Consensus       153 ~~~~~lS~G~~qr~------~la~al~~~-p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~  224 (302)
                      ..+..||+||+||+      ++|++++.+ |++|||||   |++++|+.. ..+.+++....+. .+|+++||+.+ +..
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDE---p~~~LD~~~~~~l~~~l~~~~~~-~~vi~~th~~~-~~~  350 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDE---PTVYLDENRRAKLAEIFRKVKSI-PQMIIITHHRE-LED  350 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEES---TTTTCCHHHHHHHHHHHHHCCSC-SEEEEEESCGG-GGG
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeC---CCCcCCHHHHHHHHHHHHHhccC-CeEEEEEChHH-HHh
Confidence            34568999999988      457888999 99999999   999999877 7788888776443 47888999986 678


Q ss_pred             hccCCCeeeecCc
Q psy2071         225 YFDNAPLMNVPGR  237 (302)
Q Consensus       225 ~~d~~~~l~i~g~  237 (302)
                      +||++++|+-.|.
T Consensus       351 ~~d~~~~l~k~~~  363 (371)
T 3auy_A          351 VADVIINVKKDGN  363 (371)
T ss_dssp             GCSEEEEEEESSS
T ss_pred             hCCEEEEEEecCC
Confidence            9999999985444

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.02  E-value=2e-10  Score=107.67  Aligned_cols=76  Identities=16%  Similarity=0.154  Sum_probs=64.7

Q ss_pred             cccCHHHHHHHhccccCC----CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCC
Q psy2071         156 KYMTDGMLLREGMSDPML----ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAP  230 (302)
Q Consensus       156 ~~lS~G~~qr~~la~al~----~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~  230 (302)
                      ..||+||+++++||++|+    .+|+++||||   |++++|+.. ..+.+++......+.+++++||+.. +...||+++
T Consensus       332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDE---p~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~-~~~~~d~~~  407 (430)
T 1w1w_A          332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDE---VDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT-MFEKSDALV  407 (430)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESS---TTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH-HHTTCSEEE
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCC---CcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHH-HHHhCCEEE
Confidence            459999999999999998    6899999999   999999887 7788888776544788999999965 567899999


Q ss_pred             eeeec
Q psy2071         231 LMNVP  235 (302)
Q Consensus       231 ~l~i~  235 (302)
                      +|...
T Consensus       408 ~~~~~  412 (430)
T 1w1w_A          408 GVYRQ  412 (430)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            98743

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.01  E-value=5.9e-10  Score=99.34  Aligned_cols=112  Identities=23%  Similarity=0.219  Sum_probs=75.6

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVL  155 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  155 (302)
                      +|++++++|+|||||||++..+++.+.+..|.+.+.+.++++.....+...+....        +..+--...       
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~--------~l~~~~~~~-------  161 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKV--------GVPVLEVMD-------  161 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHH--------TCCEEECCT-------
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccC--------CeEEEEcCC-------
Confidence            78999999999999999999999999988899999998877655443222221111        111100000       


Q ss_pred             cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc
Q psy2071         156 KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR  205 (302)
Q Consensus       156 ~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~  205 (302)
                       .......+|.+++.+...+++++|+||+  |+.++|... ..+.++....
T Consensus       162 -~~~p~~l~~~~l~~~~~~~~D~viiDtp--p~~~~d~~~~~~l~~~~~~~  209 (295)
T 1ls1_A          162 -GESPESIRRRVEEKARLEARDLILVDTA--GRLQIDEPLMGELARLKEVL  209 (295)
T ss_dssp             -TCCHHHHHHHHHHHHHHHTCCEEEEECC--CCSSCCHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHhCCCCEEEEeCC--CCccccHHHHHHHHHHhhhc
Confidence             0122345678888877789999999993  388888544 5555555543

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.01  E-value=9.3e-11  Score=107.18  Aligned_cols=74  Identities=18%  Similarity=0.052  Sum_probs=63.1

Q ss_pred             ccc-ccCHHHHHHHhccccCC---------CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHH
Q psy2071         154 VLK-YMTDGMLLREGMSDPML---------ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKF  222 (302)
Q Consensus       154 ~~~-~lS~G~~qr~~la~al~---------~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~  222 (302)
                      .+. ++|+||+||++||++|+         .+|++|||||   |++++|+.. ..+.+++....   .|+|++||. +. 
T Consensus       261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDE---p~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-  332 (359)
T 2o5v_A          261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDD---FTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-  332 (359)
T ss_dssp             EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECC---GGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT-
T ss_pred             chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeC---ccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc-
Confidence            455 69999999999999999         8999999999   999999887 77888887653   699999994 43 


Q ss_pred             HhhccCCCeeeecCcC
Q psy2071         223 QQYFDNAPLMNVPGRT  238 (302)
Q Consensus       223 ~~~~d~~~~l~i~g~~  238 (302)
                        +||++.+|+ .|+.
T Consensus       333 --~~~~i~~l~-~G~i  345 (359)
T 2o5v_A          333 --GAALTLRAQ-AGRF  345 (359)
T ss_dssp             --TCSEEEEEE-TTEE
T ss_pred             --cCCEEEEEE-CCEE
Confidence              899999998 6654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.99  E-value=1.6e-10  Score=105.05  Aligned_cols=136  Identities=10%  Similarity=0.100  Sum_probs=67.2

Q ss_pred             EEEEEccCCCCccchhhhhhh-cccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCV-EYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKY  157 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g-~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  157 (302)
                      .+.|.||||+||||+++.+++ ++.++.|.+.+.+.........  ...+.....    ..   .+.+......     .
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~--~~~~~~~~~----~~---~~~~~~~~~~-----~  103 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR--KLELNVVSS----PY---HLEITPSDMG-----N  103 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEEC----SS---EEEECCC---------
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc--cceeeeecc----cc---eEEecHhhcC-----C
Confidence            489999999999999999999 7888889888876542211000  000000000    00   0111100000     0


Q ss_pred             cCHH-HHH---HHhcc---------ccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHH-
Q psy2071         158 MTDG-MLL---REGMS---------DPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKF-  222 (302)
Q Consensus       158 lS~G-~~q---r~~la---------~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~-  222 (302)
                      -... .+.   .+...         ..+..+|+++|+||   ++. +|... ..+.++++.... +.++|++||+.+.+ 
T Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE---~~~-L~~~~~~~L~~~le~~~~-~~~~Il~t~~~~~l~  178 (354)
T 1sxj_E          104 NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINE---ANS-LTKDAQAALRRTMEKYSK-NIRLIMVCDSMSPII  178 (354)
T ss_dssp             CCHHHHHHHHHHHTTTTC------------CCEEEEEEC---TTS-SCHHHHHHHHHHHHHSTT-TEEEEEEESCSCSSC
T ss_pred             cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeC---ccc-cCHHHHHHHHHHHHhhcC-CCEEEEEeCCHHHHH
Confidence            0000 011   11111         11467899999999   666 77655 667777776544 68899999986542 


Q ss_pred             HhhccCCCeee
Q psy2071         223 QQYFDNAPLMN  233 (302)
Q Consensus       223 ~~~~d~~~~l~  233 (302)
                      ..+.+|+..++
T Consensus       179 ~~l~sR~~~~~  189 (354)
T 1sxj_E          179 APIKSQCLLIR  189 (354)
T ss_dssp             HHHHTTSEEEE
T ss_pred             HHHHhhceEEe
Confidence            33445554444

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}

Probab=98.99  E-value=1.3e-09  Score=108.33  Aligned_cols=198  Identities=18%  Similarity=0.112  Sum_probs=115.4

Q ss_pred             CCCCCCChhhHHHHHhhcCCChhHHHHHHHHH-HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH
Q psy2071          42 FTGYPYTPRYHELHRKRITLPVFEYRTEFMTL-LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA  120 (302)
Q Consensus        42 ~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~-i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~  120 (302)
                      |..++..+...+..+.+.--..+.+....... +..|+.+.+.||+||||||...+.+...-...|. .+....|.+.-+
T Consensus        10 ~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~-~il~i~P~r~La   88 (715)
T 2va8_A           10 IEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGG-KAIYVTPLRALT   88 (715)
T ss_dssp             GGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCS-EEEEECSCHHHH
T ss_pred             HHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCC-eEEEEeCcHHHH
Confidence            33444445555544432111223344444445 7789999999999999999976554321111232 334456766555


Q ss_pred             HHHHHHhh--hhhccccccceeeeeeecCCCCccccccccCHHHHHHHhccccC-CCCCcEEEEcCCCCCCcchHHHHHH
Q psy2071         121 MSVAQRVS--EEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPM-LENYQVILLDEAHERTLATDILMGV  197 (302)
Q Consensus       121 ~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al-~~~p~lliLDE~~~p~~~lD~~~~~  197 (302)
                      .....++.  ...+..++..+|+..+.... .....+...|.|...++...... +.+.+++|+||+|+-.. .+ ....
T Consensus        89 ~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~-~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~-~~-~~~~  165 (715)
T 2va8_A           89 NEKYLTFKDWELIGFKVAMTSGDYDTDDAW-LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLND-PE-RGPV  165 (715)
T ss_dssp             HHHHHHHGGGGGGTCCEEECCSCSSSCCGG-GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGC-TT-THHH
T ss_pred             HHHHHHHHHhhcCCCEEEEEeCCCCCchhh-cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCC-cc-cchH
Confidence            55555442  12234444444443333221 12556778899988887665554 78999999999998321 11 1123


Q ss_pred             HHHHHHHcCCCcEEEEEEecC-HHHHHhhccCCCeeeecCcCCcccee
Q psy2071         198 LKEVIKQRADLKLVIMSATLD-AGKFQQYFDNAPLMNVPGRTHPVEIF  244 (302)
Q Consensus       198 l~~ll~~~~~~~~~ii~~thd-~~~~~~~~d~~~~l~i~g~~~~~~~~  244 (302)
                      +..++.......++++++|-+ .+.+.++.+ +.++...++..|++..
T Consensus       166 l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~  212 (715)
T 2va8_A          166 VESVTIRAKRRNLLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEG  212 (715)
T ss_dssp             HHHHHHHHHTSEEEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEE
T ss_pred             HHHHHHhcccCcEEEEcCCCCCHHHHHHHhC-CCccCCCCCCCCceEE
Confidence            333443333668999999985 778888775 4445556777776543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.99  E-value=5.7e-11  Score=108.26  Aligned_cols=44  Identities=11%  Similarity=0.129  Sum_probs=35.1

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-ccCCCEEEe
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-KSVGAKAVA  111 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-~~~G~~~i~  111 (302)
                      .++++..+ +|++++|+|+||||||||+++|+|+.. +..|.+.+.
T Consensus       206 l~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~  250 (358)
T 2rcn_A          206 LKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNV  250 (358)
T ss_dssp             HHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----
T ss_pred             HHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCcccc
Confidence            56666654 899999999999999999999999999 999998775

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.98  E-value=1e-11  Score=107.63  Aligned_cols=37  Identities=24%  Similarity=0.129  Sum_probs=32.8

Q ss_pred             hCCEEEEEccCCCCccchhhhhh---hcccccCCCEEEee
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWC---VEYSKSVGAKAVAC  112 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~---g~~~~~~G~~~i~~  112 (302)
                      ++++++|+|+||||||||+++|+   |+..++.|.+.+.+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~   65 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLREN   65 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHH
Confidence            57999999999999999999999   99888888776554

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.97  E-value=1.2e-11  Score=103.80  Aligned_cols=28  Identities=36%  Similarity=0.479  Sum_probs=23.9

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhccc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      ++|++++|+||||||||||+++|+|+++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5789999999999999999999999875

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.97  E-value=9.4e-11  Score=105.16  Aligned_cols=45  Identities=13%  Similarity=0.049  Sum_probs=41.2

Q ss_pred             HHHHHHHHH-------------------HhCCEEEEEccCCCCccchhhhhhhccc--ccCCCEEE
Q psy2071          66 YRTEFMTLL-------------------AQNQCIVLVGETGSGKTTQIPQWCVEYS--KSVGAKAV  110 (302)
Q Consensus        66 ~~~~i~~~i-------------------~~g~i~~liG~nGsGKSTll~~i~g~~~--~~~G~~~i  110 (302)
                      +.+++++.+                   .+|++++|+|+||||||||+++|+|++.  |++|.+.+
T Consensus        50 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v  115 (308)
T 1sq5_A           50 LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL  115 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence            567777777                   8899999999999999999999999988  99999998

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.92  E-value=1.3e-10  Score=108.04  Aligned_cols=35  Identities=31%  Similarity=0.389  Sum_probs=32.5

Q ss_pred             HHHHHHHHHhCCE--EEEEccCCCCccchhhhhhhcc
Q psy2071          67 RTEFMTLLAQNQC--IVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        67 ~~~i~~~i~~g~i--~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++++++.+++|++  ++|+|+||||||||+++|+|+.
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            7899999999999  9999999999999999999974

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.91  E-value=2.7e-11  Score=106.90  Aligned_cols=113  Identities=15%  Similarity=0.053  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh--h-----HHHHHHHh-hhhhccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV--A-----AMSVAQRV-SEEMDCQLG  136 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~--~-----~~~~~~~~-~~~~~~~~~  136 (302)
                      ...+++++.+++|  ++|+||||||||||+++++|...+  |.+.+.|.+....  +     ...+.+.. ...+...+.
T Consensus        34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~  109 (274)
T 2x8a_A           34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF  109 (274)
T ss_dssp             HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence            3466777777788  999999999999999999998765  5777777553211  0     11111111 011122333


Q ss_pred             cceeeeeeecC-------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcC
Q psy2071         137 QEVGYSIRFED-------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE  183 (302)
Q Consensus       137 ~~v~~~~~~~~-------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE  183 (302)
                      +++........       ....+..+..|||||+||+.+++++..+|++|  ||
T Consensus       110 Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~  161 (274)
T 2x8a_A          110 DEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DP  161 (274)
T ss_dssp             ETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CH
T ss_pred             ehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CH
Confidence            33332111000       00113345679999999999999999999975  88

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.87  E-value=2e-11  Score=113.62  Aligned_cols=111  Identities=15%  Similarity=0.108  Sum_probs=64.2

Q ss_pred             HHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc-----------cccCCCEEEee-cC------chhhhHHHHHHHhhh
Q psy2071          68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY-----------SKSVGAKAVAC-TQ------PRRVAAMSVAQRVSE  129 (302)
Q Consensus        68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~-----------~~~~G~~~i~~-~~------~~~~~~~~~~~~~~~  129 (302)
                      +++++.++.++.++|+|+|||||||||+++++..           .|..|.+.+.+ ..      +...........+..
T Consensus       148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~  227 (416)
T 1udx_A          148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGL  227 (416)
T ss_dssp             EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCH
T ss_pred             eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhH
Confidence            4567788999999999999999999999999973           23333332221 00      000000000000000


Q ss_pred             hhccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEE
Q psy2071         130 EMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILL  181 (302)
Q Consensus       130 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliL  181 (302)
                      .+. ...+.....+...+..  ...+..+|+|++|++.++++|+..|.+|++
T Consensus       228 ~fl-~~~era~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVl  276 (416)
T 1udx_A          228 EFL-RHIARTRVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVAL  276 (416)
T ss_dssp             HHH-HHHTSSSEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE
T ss_pred             HHH-HHHHHHHhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE
Confidence            000 0000111111111111  456678999999999999999999999999

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.81  E-value=8.4e-11  Score=111.06  Aligned_cols=51  Identities=14%  Similarity=0.116  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP  115 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~  115 (302)
                      |.+++++++.|++ ++++|+||||||||||+++|+|+++|++|.+.+.|...
T Consensus        17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~   67 (483)
T 3euj_A           17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE   67 (483)
T ss_dssp             ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred             cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence            5556788999999 99999999999999999999999999999999988754

>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A

Probab=98.81  E-value=9.5e-09  Score=102.04  Aligned_cols=174  Identities=14%  Similarity=0.105  Sum_probs=102.6

Q ss_pred             HHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhh--hhccccccceeeeeee
Q psy2071          68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSE--EMDCQLGQEVGYSIRF  145 (302)
Q Consensus        68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~  145 (302)
                      ..+...+..|+.+.+.||+|||||+...+.+...-...|.+.+  ..|.+.-+......+..  ..+..++..+|+....
T Consensus        31 ~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~--i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~  108 (702)
T 2p6r_A           31 AEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLY--VVPLRALAGEKYESFKKWEKIGLRIGISTGDYESR  108 (702)
T ss_dssp             HHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEE--EESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCC
T ss_pred             HHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEE--EeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcc
Confidence            3344447789999999999999999864443211112344433  44655444444444421  1233444444443333


Q ss_pred             cCCCCccccccccCHHHHHHHhccccC-CCCCcEEEEcCCCCCCc-chHHHHHH-HHHHHHHcCCCcEEEEEEecC-HHH
Q psy2071         146 EDCSSPKTVLKYMTDGMLLREGMSDPM-LENYQVILLDEAHERTL-ATDILMGV-LKEVIKQRADLKLVIMSATLD-AGK  221 (302)
Q Consensus       146 ~~~~~~~~~~~~lS~G~~qr~~la~al-~~~p~lliLDE~~~p~~-~lD~~~~~-l~~ll~~~~~~~~~ii~~thd-~~~  221 (302)
                      ... .....+...|.|+..++...... +.+.+++|+||+|+-.. +-...... +..+........++++++|.+ .+.
T Consensus       109 ~~~-~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~~~  187 (702)
T 2p6r_A          109 DEH-LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTE  187 (702)
T ss_dssp             SSC-STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTTHHH
T ss_pred             hhh-ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCCHHH
Confidence            221 22456777888988876665544 78999999999997221 11122222 222222334568899999976 778


Q ss_pred             HHhhccCCCeeeecCcCCccceee
Q psy2071         222 FQQYFDNAPLMNVPGRTHPVEIFY  245 (302)
Q Consensus       222 ~~~~~d~~~~l~i~g~~~~~~~~~  245 (302)
                      +.++.+ +.++...++..|++..+
T Consensus       188 ~~~~l~-~~~~~~~~r~~~l~~~~  210 (702)
T 2p6r_A          188 IAEWLD-ADYYVSDWRPVPLVEGV  210 (702)
T ss_dssp             HHHHTT-CEEEECCCCSSCEEEEE
T ss_pred             HHHHhC-CCcccCCCCCccceEEE
Confidence            888776 44556677777776543

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.80  E-value=1.8e-10  Score=102.35  Aligned_cols=30  Identities=23%  Similarity=0.192  Sum_probs=26.4

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhccccc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKS  104 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~  104 (302)
                      ..+.+++|+|++||||||+.+.|.+++.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~   58 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK   58 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            356799999999999999999999988763

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.79  E-value=1.7e-10  Score=106.49  Aligned_cols=56  Identities=7%  Similarity=0.005  Sum_probs=44.2

Q ss_pred             CC--cEEEEcCCCCCCcchHHHH-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCC-eeeecC
Q psy2071         175 NY--QVILLDEAHERTLATDILM-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAP-LMNVPG  236 (302)
Q Consensus       175 ~p--~lliLDE~~~p~~~lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~-~l~i~g  236 (302)
                      +|  ++.++||   ++...|+.. ....+.+... ...|.|++  +|++..+.++|+++. +|. .|
T Consensus       139 dP~~di~ilde---el~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~-~G  199 (392)
T 1ni3_A          139 DPIRDLSIIVD---ELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLT-ET  199 (392)
T ss_dssp             CHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHH-TT
T ss_pred             Ccchhhhhchh---hhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhc-cC
Confidence            88  9999999   999999766 5556666655 55566654  999999999999987 776 56

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.73  E-value=6.1e-09  Score=99.47  Aligned_cols=50  Identities=20%  Similarity=0.208  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ  114 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~  114 (302)
                      .+++++++.+++|++++|+|||||||||++++++|+++|+.|.+.+.+..
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~  297 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR  297 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence            35788999999999999999999999999999999999999999887753

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*

Probab=98.72  E-value=1.5e-08  Score=100.86  Aligned_cols=195  Identities=13%  Similarity=0.108  Sum_probs=105.1

Q ss_pred             CCCCChhhHHHHHhhcCCChhHHHHHHHHH-HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHH
Q psy2071          44 GYPYTPRYHELHRKRITLPVFEYRTEFMTL-LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMS  122 (302)
Q Consensus        44 ~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~-i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~  122 (302)
                      ..+..+.+.+..+.+.--.-+.+...+... +..|+.+.+.||+|||||+...+.+...-...|. .+....|.+.-+..
T Consensus         5 ~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~-~~l~i~P~raLa~q   83 (720)
T 2zj8_A            5 ELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGG-KAVYIVPLKALAEE   83 (720)
T ss_dssp             GCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCS-EEEEECSSGGGHHH
T ss_pred             hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHH
Confidence            344455566655543221334445555555 7889999999999999999754332211111232 23345566655555


Q ss_pred             HHHHhhh--hhccccccceeeeeeecCCCCccccccccCHHHHHHHhccccC-CCCCcEEEEcCCCCCCc-chHHHHHHH
Q psy2071         123 VAQRVSE--EMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPM-LENYQVILLDEAHERTL-ATDILMGVL  198 (302)
Q Consensus       123 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al-~~~p~lliLDE~~~p~~-~lD~~~~~l  198 (302)
                      +..++..  ..+..+....|- ............+...|.|+..++...... +.+.+++|+||+|.-.. .-......+
T Consensus        84 ~~~~~~~l~~~g~~v~~~~G~-~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~l  162 (720)
T 2zj8_A           84 KFQEFQDWEKIGLRVAMATGD-YDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVI  162 (720)
T ss_dssp             HHHHTGGGGGGTCCEEEECSC-SSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred             HHHHHHHHHhcCCEEEEecCC-CCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHH
Confidence            5555532  112222222221 011111122456677899988776655444 77899999999984211 111222222


Q ss_pred             HHHHHHcCCCcEEEEEEec-CHHHHHhhccCCCeeeecCcCCccce
Q psy2071         199 KEVIKQRADLKLVIMSATL-DAGKFQQYFDNAPLMNVPGRTHPVEI  243 (302)
Q Consensus       199 ~~ll~~~~~~~~~ii~~th-d~~~~~~~~d~~~~l~i~g~~~~~~~  243 (302)
                      ...+.  ....++++++|. +.+.+.++.+. ..+...++..|.+.
T Consensus       163 l~~l~--~~~~ii~lSATl~n~~~~~~~l~~-~~~~~~~rp~~l~~  205 (720)
T 2zj8_A          163 LAHML--GKAQIIGLSATIGNPEELAEWLNA-ELIVSDWRPVKLRR  205 (720)
T ss_dssp             HHHHB--TTBEEEEEECCCSCHHHHHHHTTE-EEEECCCCSSEEEE
T ss_pred             HHHhh--cCCeEEEEcCCcCCHHHHHHHhCC-cccCCCCCCCcceE
Confidence            22221  245788999997 57778777752 23344555555543

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.72  E-value=1.7e-09  Score=92.69  Aligned_cols=36  Identities=22%  Similarity=0.152  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhh-hcc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC-VEY  101 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~-g~~  101 (302)
                      ...++++.+++|++++|+|||||||||++++|+ |++
T Consensus        16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            478899999999999999999999999999999 988

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.69  E-value=2.5e-09  Score=96.91  Aligned_cols=47  Identities=23%  Similarity=0.268  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHHHhC-------CEEEEEccCCCCccchhhhhhhcc----cccCCCEEE
Q psy2071          64 FEYRTEFMTLLAQN-------QCIVLVGETGSGKTTQIPQWCVEY----SKSVGAKAV  110 (302)
Q Consensus        64 ~~~~~~i~~~i~~g-------~i~~liG~nGsGKSTll~~i~g~~----~~~~G~~~i  110 (302)
                      ..++++++..++.|       +.++|+||||||||||++++++.+    .+.+|.+..
T Consensus        31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~   88 (334)
T 1in4_A           31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV   88 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc
Confidence            35678889999877       899999999999999999999987    666665543

>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...

Probab=98.69  E-value=7.6e-09  Score=101.24  Aligned_cols=154  Identities=21%  Similarity=0.234  Sum_probs=99.1

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhh
Q psy2071          53 ELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEM  131 (302)
Q Consensus        53 ~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~  131 (302)
                      +....|..+|.+...+.+...+..|+.+.+.||+|||||+.+.+.+..    .| .+.  ...|.+..+..+..++...+
T Consensus       208 e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~----~g~~vL--Vl~PTReLA~Qia~~l~~~~  281 (666)
T 3o8b_A          208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA----QGYKVL--VLNPSVAATLGFGAYMSKAH  281 (666)
T ss_dssp             HHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH----TTCCEE--EEESCHHHHHHHHHHHHHHH
T ss_pred             HhhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH----CCCeEE--EEcchHHHHHHHHHHHHHHh
Confidence            445667778888888888888889999999999999999987654322    24 333  34566766666766766666


Q ss_pred             ccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEE
Q psy2071         132 DCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLV  211 (302)
Q Consensus       132 ~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~  211 (302)
                      +..++..+++...     .....+...+.|..++  -....+.+.++||+||+|+...+.+.....+.+.+......-..
T Consensus       282 g~~vg~~vG~~~~-----~~~~~IlV~TPGrLl~--~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~lli  354 (666)
T 3o8b_A          282 GIDPNIRTGVRTI-----TTGAPVTYSTYGKFLA--DGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVV  354 (666)
T ss_dssp             SCCCEEECSSCEE-----CCCCSEEEEEHHHHHH--TTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEE
T ss_pred             CCCeeEEECcEec-----cCCCCEEEECcHHHHh--CCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEE
Confidence            5554444444321     2234566677787532  12233567999999999887766665554444444322222245


Q ss_pred             EEEEecCH
Q psy2071         212 IMSATLDA  219 (302)
Q Consensus       212 ii~~thd~  219 (302)
                      +++||...
T Consensus       355 l~SAT~~~  362 (666)
T 3o8b_A          355 LATATPPG  362 (666)
T ss_dssp             EEESSCTT
T ss_pred             EECCCCCc
Confidence            56888754

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.65  E-value=7.8e-08  Score=89.74  Aligned_cols=123  Identities=17%  Similarity=0.195  Sum_probs=76.8

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcccccc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK  156 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  156 (302)
                      +.+++++|++||||||++..|+..+.+..+.+.+.+.++.+.++...........+        ..+.  ......    
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~g--------v~~~--~~~~~~----  162 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIG--------VQVY--GEPNNQ----  162 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTT--------CCEE--CCTTCS----
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcC--------Ccee--eccccC----
Confidence            57999999999999999999999998877889888888777666554444333222        1111  000000    


Q ss_pred             ccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc--hHHHH-HHHHHHHHHcCCCcEEEEEEec
Q psy2071         157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLA--TDILM-GVLKEVIKQRADLKLVIMSATL  217 (302)
Q Consensus       157 ~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~--lD~~~-~~l~~ll~~~~~~~~~ii~~th  217 (302)
                        ..-...+.+++.+...+++++|+|+++.  ..  .|... ..+..+........+++++-++
T Consensus       163 --dp~~i~~~al~~a~~~~~DvvIIDTaGr--~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~  222 (433)
T 3kl4_A          163 --NPIEIAKKGVDIFVKNKMDIIIVDTAGR--HGYGEETKLLEEMKEMYDVLKPDDVILVIDAS  222 (433)
T ss_dssp             --CHHHHHHHHHHHTTTTTCSEEEEEECCC--SSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred             --CHHHHHHHHHHHHHhcCCCEEEEECCCC--ccccCCHHHHHHHHHHHHhhCCcceEEEEeCc
Confidence              1112223356666668999999999532  23  55433 5666665544444555555554

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.64  E-value=3.1e-10  Score=100.09  Aligned_cols=113  Identities=13%  Similarity=0.009  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-------HHHHHHHhhh-hhccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-------AMSVAQRVSE-EMDCQLG  136 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-------~~~~~~~~~~-~~~~~~~  136 (302)
                      ...+++++.+++|  ++|+||||||||||++++++...  .|.+.+.+.+.....       ...+.+.... .....+.
T Consensus        63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~i  138 (278)
T 1iy2_A           63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI  138 (278)
T ss_dssp             HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEE
T ss_pred             HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEeh
Confidence            3456666666777  89999999999999999999875  677888765432110       0011111110 1112233


Q ss_pred             cceeeee-eecC---------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcC
Q psy2071         137 QEVGYSI-RFED---------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE  183 (302)
Q Consensus       137 ~~v~~~~-~~~~---------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE  183 (302)
                      +++.... ....         .......+..||+|++|++.+++++..+|++  ||+
T Consensus       139 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~--ld~  193 (278)
T 1iy2_A          139 DEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDP  193 (278)
T ss_dssp             ETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS--SCH
T ss_pred             hhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh--CCH
Confidence            3331110 0000         0001234556999999999999999999987  676

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.62  E-value=7.9e-08  Score=93.83  Aligned_cols=51  Identities=18%  Similarity=0.094  Sum_probs=43.5

Q ss_pred             ChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccC-CCEEEee
Q psy2071          62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSV-GAKAVAC  112 (302)
Q Consensus        62 p~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~-G~~~i~~  112 (302)
                      ....+++.++..+..|+.++|+|||||||||++++|++++.+.. |.+.+.+
T Consensus        45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~   96 (604)
T 3k1j_A           45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFP   96 (604)
T ss_dssp             SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEEC
T ss_pred             CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeC
Confidence            34457899999999999999999999999999999999998877 4555544

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.61  E-value=3.9e-08  Score=89.56  Aligned_cols=48  Identities=21%  Similarity=0.151  Sum_probs=35.5

Q ss_pred             HHHHHH--HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC
Q psy2071          67 RTEFMT--LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ  114 (302)
Q Consensus        67 ~~~i~~--~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~  114 (302)
                      ++.+.-  -+++|+++.|.|++|||||||..+++.......|.+.+....
T Consensus        49 LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E   98 (349)
T 2zr9_A           49 LDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE   98 (349)
T ss_dssp             HHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            444443  466999999999999999999988887665555666555443

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.60  E-value=3.9e-10  Score=97.96  Aligned_cols=113  Identities=14%  Similarity=0.025  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH---HHHHHHhhhh-----hccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA---MSVAQRVSEE-----MDCQLG  136 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~---~~~~~~~~~~-----~~~~~~  136 (302)
                      ...+++++.+++|  ++|+||||||||||++++++...  .|.+.+.+.+......   ......+.+.     ....+.
T Consensus        39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~  114 (254)
T 1ixz_A           39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI  114 (254)
T ss_dssp             HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred             HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEe
Confidence            3456666667777  89999999999999999999874  6777777654311100   0001111111     112222


Q ss_pred             cceeee-eeecC----CC-----CccccccccCHHHHHHHhccccCCCCCcEEEEcC
Q psy2071         137 QEVGYS-IRFED----CS-----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE  183 (302)
Q Consensus       137 ~~v~~~-~~~~~----~~-----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE  183 (302)
                      +++... .....    ..     ..+..+..||+|++|++.+++++..+|++  +|+
T Consensus       115 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld~  169 (254)
T 1ixz_A          115 DEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDP  169 (254)
T ss_dssp             ETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG--SCG
T ss_pred             hhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh--CCH
Confidence            333111 00000    00     01234556899999999999999999987  687

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.57  E-value=3.7e-08  Score=92.86  Aligned_cols=51  Identities=12%  Similarity=0.145  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecC
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQ  114 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~  114 (302)
                      +..++++..-+.+|++++|.|++|+|||||+.++++...+..| .+.+....
T Consensus       190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E  241 (454)
T 2r6a_A          190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE  241 (454)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred             cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            4567888877999999999999999999999999988776556 66666544

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.56  E-value=2e-08  Score=89.69  Aligned_cols=44  Identities=11%  Similarity=0.134  Sum_probs=31.4

Q ss_pred             HHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEE---eecC
Q psy2071          71 MTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV---ACTQ  114 (302)
Q Consensus        71 ~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i---~~~~  114 (302)
                      .+.+..|++++|+||||||||||+++|+|+..|++|.+.+   .|..
T Consensus       163 lf~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~  209 (301)
T 1u0l_A          163 LKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRH  209 (301)
T ss_dssp             HHHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------
T ss_pred             HHHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCC
Confidence            3456689999999999999999999999999999999988   5544

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.55  E-value=1.4e-08  Score=84.89  Aligned_cols=31  Identities=13%  Similarity=0.326  Sum_probs=26.4

Q ss_pred             HHHHhCCEEEEEccCCCCccchhhhhhhccc
Q psy2071          72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +.+.+|++++|+||||||||||+++|+|+++
T Consensus         2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            2 NAMNKANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             ---CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4567899999999999999999999999863

>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A

Probab=98.53  E-value=3.5e-08  Score=96.48  Aligned_cols=160  Identities=18%  Similarity=0.260  Sum_probs=94.7

Q ss_pred             CChhhHHHHHh--hcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccCCCEEEeecCchhhhHHH
Q psy2071          47 YTPRYHELHRK--RITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVGAKAVACTQPRRVAAMS  122 (302)
Q Consensus        47 ~~~~~~~l~~~--r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G~~~i~~~~~~~~~~~~  122 (302)
                      ++++|++....  +..+|+++.  . ...+.+|+.+.+.+|+|||||+.  ++++..+.. ..+.+.+.  .|.+.-+..
T Consensus       157 ~~~~~~~~l~~~~~~~lpiq~~--~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-~~~~vLvl--~PtreLa~Q  230 (618)
T 2whx_A          157 KSGDYVSAITQAERIGEPDYEV--D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-RRLRTLIL--APTRVVAAE  230 (618)
T ss_dssp             -----CEECBCCCCCCCCCCCC--C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEE--ESSHHHHHH
T ss_pred             chHHHHHHHhhccccCCCcccc--C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-CCCeEEEE--cChHHHHHH
Confidence            44445443222  667888875  2 55677899999999999999996  455544333 22234332  244433322


Q ss_pred             HHHHhhhhhccccccceeeeeee-cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHH
Q psy2071         123 VAQRVSEEMDCQLGQEVGYSIRF-EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEV  201 (302)
Q Consensus       123 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~l  201 (302)
                      +...+.       +..++|.... .......+.+..++.|...+..+....+.+.++||+||+|.-..+.+.....+.+.
T Consensus       231 i~~~l~-------~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~  303 (618)
T 2whx_A          231 MEEALR-------GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTR  303 (618)
T ss_dssp             HHHHTT-------TSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHH
T ss_pred             HHHHhc-------CCceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHH
Confidence            222221       1233333221 11223455667788888877777777899999999999998755555555555554


Q ss_pred             HHHcCCCcEEEEEEecCHH
Q psy2071         202 IKQRADLKLVIMSATLDAG  220 (302)
Q Consensus       202 l~~~~~~~~~ii~~thd~~  220 (302)
                      +.. .+..+++++||....
T Consensus       304 l~~-~~~q~il~SAT~~~~  321 (618)
T 2whx_A          304 VEM-GEAAAIFMTATPPGS  321 (618)
T ss_dssp             HHH-TSCEEEEECSSCTTC
T ss_pred             hcc-cCccEEEEECCCchh
Confidence            422 345688888887543

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.53  E-value=4.3e-08  Score=93.24  Aligned_cols=157  Identities=10%  Similarity=0.089  Sum_probs=87.5

Q ss_pred             HHHHHHhCCEEEEEccCCCCccchhhhhhh--cccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeee----
Q psy2071          70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCV--EYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSI----  143 (302)
Q Consensus        70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g--~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----  143 (302)
                      +...+.++..++|.|+|||||||+++.|+.  ++.++.|.+.+.+.++........ ..+.... ..+..+.....    
T Consensus       160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~-~~lPhl~-~~Vvtd~~~a~~~L~  237 (512)
T 2ius_A          160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVY-EGIPHLL-TEVVTDMKDAANALR  237 (512)
T ss_dssp             EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGG-TTCTTBS-SSCBCSHHHHHHHHH
T ss_pred             EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhh-ccCCccc-ceeecCHHHHHHHHH
Confidence            345567789999999999999999999876  556666888887777654211000 0000000 00000000000    


Q ss_pred             --------e-----ecCCCC---cc-ccccccCHHHHHHH----------hccccCCCCCc-EEEEcCCCCCCcchHHH-
Q psy2071         144 --------R-----FEDCSS---PK-TVLKYMTDGMLLRE----------GMSDPMLENYQ-VILLDEAHERTLATDIL-  194 (302)
Q Consensus       144 --------~-----~~~~~~---~~-~~~~~lS~G~~qr~----------~la~al~~~p~-lliLDE~~~p~~~lD~~-  194 (302)
                              |     ......   .+ .....+|+|++|+.          .+++++...|. ++++||   +...++.. 
T Consensus       238 ~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE---~~~ll~~~~  314 (512)
T 2ius_A          238 WCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDE---FADLMMTVG  314 (512)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEET---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeC---HHHHHhhhh
Confidence                    0     000000   00 01123566665542          35667778898 899999   55555522 


Q ss_pred             ---HHHHHHHHHHcCCCcEEEEEEecCHH-------HHHhhccCCCe
Q psy2071         195 ---MGVLKEVIKQRADLKLVIMSATLDAG-------KFQQYFDNAPL  231 (302)
Q Consensus       195 ---~~~l~~ll~~~~~~~~~ii~~thd~~-------~~~~~~d~~~~  231 (302)
                         ...+..+.+..+..|+.++++||...       ...++..|+++
T Consensus       315 ~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l  361 (512)
T 2ius_A          315 KKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF  361 (512)
T ss_dssp             HHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred             HHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence               24455555555667999999999876       34455555543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.53  E-value=3.9e-08  Score=91.57  Aligned_cols=48  Identities=21%  Similarity=0.171  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ  114 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~  114 (302)
                      .+++++ . ..+|++++|+|||||||||++++++|++.|+.|.|.+.+..
T Consensus       157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~  204 (418)
T 1p9r_A          157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP  204 (418)
T ss_dssp             HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred             HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence            356666 2 47899999999999999999999999999999999887754

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.47  E-value=4e-09  Score=90.29  Aligned_cols=38  Identities=18%  Similarity=0.258  Sum_probs=29.8

Q ss_pred             CEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP  115 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~  115 (302)
                      ++++|+||||||||||+++|+|++.|++|.+.+.|.+.
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~   65 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE   65 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence            67899999999999999999999999999999988664

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.46  E-value=9.9e-08  Score=85.83  Aligned_cols=52  Identities=23%  Similarity=0.233  Sum_probs=44.7

Q ss_pred             HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH
Q psy2071          69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA  120 (302)
Q Consensus        69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~  120 (302)
                      ++++.+.++++++|+|+|||||||++..|++.+.+..|.+.+.+.++.+.+.
T Consensus        97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a  148 (320)
T 1zu4_A           97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA  148 (320)
T ss_dssp             CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHH
T ss_pred             CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhH
Confidence            3455567899999999999999999999999999888899999888766554

>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A

Probab=98.42  E-value=6.6e-07  Score=84.20  Aligned_cols=150  Identities=17%  Similarity=0.225  Sum_probs=82.4

Q ss_pred             HHHhCCEEEEEccCCCCccc--hhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecC-CC
Q psy2071          73 LLAQNQCIVLVGETGSGKTT--QIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFED-CS  149 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKST--ll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~  149 (302)
                      .+..++++.+.+|+|||||+  +++++.-... ..+.+.+.  .|.+.-+..+...    +.   +..+++...... ..
T Consensus        15 ~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-~~~~~lvl--~Ptr~La~Q~~~~----l~---g~~v~~~~~~~~~~~   84 (451)
T 2jlq_A           15 IFRKKRLTIMDLHPGAGKTKRILPSIVREALL-RRLRTLIL--APTRVVAAEMEEA----LR---GLPIRYQTPAVKSDH   84 (451)
T ss_dssp             GGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-TTCCEEEE--ESSHHHHHHHHHH----TT---TSCEEECCTTCSCCC
T ss_pred             HHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-cCCcEEEE--CCCHHHHHHHHHH----hc---CceeeeeeccccccC
Confidence            45667888999999999999  4554433322 22334332  2444322222222    21   112222221110 11


Q ss_pred             CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCC
Q psy2071         150 SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNA  229 (302)
Q Consensus       150 ~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~  229 (302)
                      ...+.+..++.|...+..+....+.+.++||+||+|......+.....+.... ...+..++++++|.+.+....+....
T Consensus        85 ~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~  163 (451)
T 2jlq_A           85 TGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRV-EMGEAAAIFMTATPPGSTDPFPQSNS  163 (451)
T ss_dssp             CSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHH-HTTSCEEEEECSSCTTCCCSSCCCSS
T ss_pred             CCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhh-cCCCceEEEEccCCCccchhhhcCCC
Confidence            23345667888887766666677889999999999977433333333332211 22355788899998654433333344


Q ss_pred             Ceee
Q psy2071         230 PLMN  233 (302)
Q Consensus       230 ~~l~  233 (302)
                      .++.
T Consensus       164 ~~~~  167 (451)
T 2jlq_A          164 PIED  167 (451)
T ss_dssp             CEEE
T ss_pred             ceEe
Confidence            4444

>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A

Probab=98.41  E-value=1e-06  Score=83.07  Aligned_cols=137  Identities=25%  Similarity=0.265  Sum_probs=79.1

Q ss_pred             HHHHhCCEEEEEccCCCCccch--hhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecC-C
Q psy2071          72 TLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFED-C  148 (302)
Q Consensus        72 ~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~  148 (302)
                      ..+..|+.+.+.+|+|||||+.  ++++..+.. ..+.+.+  ..|.+.-+..+...+.       +..+++...... .
T Consensus        16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-~~~~~lv--l~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~   85 (459)
T 2z83_A           16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-QRLRTAV--LAPTRVVAAEMAEALR-------GLPVRYQTSAVQRE   85 (459)
T ss_dssp             GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-TTCCEEE--EECSHHHHHHHHHHTT-------TSCEEECC------
T ss_pred             HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEE--ECchHHHHHHHHHHhc-------CceEeEEecccccC
Confidence            3567899999999999999996  444433332 2233333  2354443333333221       112222211100 1


Q ss_pred             CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCH
Q psy2071         149 SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDA  219 (302)
Q Consensus       149 ~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~  219 (302)
                      ....+.+..++.|...+..+....+.+.++||+||+|+.....+.....+..... .....++++++|...
T Consensus        86 ~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~  155 (459)
T 2z83_A           86 HQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPG  155 (459)
T ss_dssp             --CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTT
T ss_pred             CCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCc
Confidence            1233456678888877766777778899999999999875544544444444432 245578889998864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.41  E-value=9.1e-08  Score=85.40  Aligned_cols=43  Identities=12%  Similarity=0.149  Sum_probs=33.8

Q ss_pred             HHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEE---eecC
Q psy2071          71 MTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV---ACTQ  114 (302)
Q Consensus        71 ~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i---~~~~  114 (302)
                      .+.+..|++++|+|+||||||||+++|+ +..|++|.+.+   .|..
T Consensus       159 L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~  204 (302)
T 2yv5_A          159 LVDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRH  204 (302)
T ss_dssp             HHHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------
T ss_pred             HHhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCC
Confidence            3455679999999999999999999999 99999999988   6654

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.37  E-value=7.7e-07  Score=81.01  Aligned_cols=40  Identities=25%  Similarity=0.208  Sum_probs=33.9

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC  112 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~  112 (302)
                      -+.+|+++.|.||+|||||||+.+++....+..|.+.+..
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId   96 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID   96 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            4678999999999999999999999998877777764443

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.36  E-value=2.8e-08  Score=88.75  Aligned_cols=39  Identities=18%  Similarity=0.239  Sum_probs=26.5

Q ss_pred             HHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEE
Q psy2071          72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV  110 (302)
Q Consensus        72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i  110 (302)
                      +.+.+|++++|+|+||||||||+++|+|+..+..|.+.+
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~  206 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  206 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence            567789999999999999999999999999999999877

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.36  E-value=8.3e-08  Score=90.75  Aligned_cols=104  Identities=15%  Similarity=0.146  Sum_probs=61.4

Q ss_pred             EEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccccccC
Q psy2071          80 IVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMT  159 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~lS  159 (302)
                      +.|+||+|+||||+.+.+++....  -.+.+.+.+.               ..                    ..  .=.
T Consensus        52 vLL~GppGtGKT~Laraia~~~~~--~f~~is~~~~---------------~~--------------------~~--~g~   92 (476)
T 2ce7_A           52 ILLVGPPGTGKTLLARAVAGEANV--PFFHISGSDF---------------VE--------------------LF--VGV   92 (476)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGT---------------TT--------------------CC--TTH
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC--CeeeCCHHHH---------------HH--------------------HH--hcc
Confidence            889999999999999999885421  0111111100               00                    00  002


Q ss_pred             HHHHHHHhccccCCCCCcEEEEcCCCCC-------CcchHHHH-HHHHHHHHHc----CCCcEEEEEEecCHHHH
Q psy2071         160 DGMLLREGMSDPMLENYQVILLDEAHER-------TLATDILM-GVLKEVIKQR----ADLKLVIMSATLDAGKF  222 (302)
Q Consensus       160 ~G~~qr~~la~al~~~p~lliLDE~~~p-------~~~lD~~~-~~l~~ll~~~----~~~~~~ii~~thd~~~~  222 (302)
                      +++++|..++.|....|.+|++||++.=       +.+.|... ..+.+++...    ...+++||.+||..+.+
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L  167 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL  167 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence            5677888888888889999999993211       12333222 3344444322    23478999999987644

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.35  E-value=1.3e-07  Score=79.08  Aligned_cols=48  Identities=19%  Similarity=0.068  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCE--EEeecC
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAK--AVACTQ  114 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~--~i~~~~  114 (302)
                      ..+......++|++++|+|+|||||||+.+.|++.+. ..|.+  .+++..
T Consensus        14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~   63 (200)
T 3uie_A           14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDN   63 (200)
T ss_dssp             HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHH
T ss_pred             HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCch
Confidence            3466677788999999999999999999999999887 67877  666543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.34  E-value=8.9e-07  Score=80.87  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=27.5

Q ss_pred             EEEEEccCCCCccchhhhhhhcccccCC--CEEEeec
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVACT  113 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~~~  113 (302)
                      .+.|.||+|+||||+++.++....+..+  .+.+++.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~   82 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF   82 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc
Confidence            8999999999999999999988765432  3445543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.33  E-value=1.2e-07  Score=77.91  Aligned_cols=35  Identities=14%  Similarity=0.154  Sum_probs=28.9

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcccc-cCCCEEE
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYSK-SVGAKAV  110 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~~-~~G~~~i  110 (302)
                      +|++++|+||||||||||++.|++.+++ ..|.+..
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~   39 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH   39 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence            6899999999999999999999998763 3455443

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.32  E-value=4.4e-07  Score=81.48  Aligned_cols=52  Identities=15%  Similarity=0.020  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHHhCC------EEEEEccCCCCccchhhhhhhccc--ccCCCEEEeecCc
Q psy2071          64 FEYRTEFMTLLAQNQ------CIVLVGETGSGKTTQIPQWCVEYS--KSVGAKAVACTQP  115 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~------i~~liG~nGsGKSTll~~i~g~~~--~~~G~~~i~~~~~  115 (302)
                      .+.+.++...+..++      +++|+|||||||||++++|.+++.  |+.|.+.+.+.+.
T Consensus        73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~  132 (321)
T 3tqc_A           73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG  132 (321)
T ss_dssp             HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence            345677788888877      999999999999999999999987  4667777666553

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.30  E-value=1.2e-07  Score=79.18  Aligned_cols=34  Identities=29%  Similarity=0.208  Sum_probs=28.9

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccCC
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG  106 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G  106 (302)
                      .+.+|++++|+|+|||||||++++|++.+.|+.|
T Consensus         2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             --CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            4678999999999999999999999998866544

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.29  E-value=2.4e-07  Score=77.38  Aligned_cols=39  Identities=26%  Similarity=0.235  Sum_probs=32.2

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP  115 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~  115 (302)
                      ..++|++++|+|+|||||||++++|++.+    |.+.+.+...
T Consensus        25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~   63 (200)
T 4eun_A           25 TGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF   63 (200)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence            34689999999999999999999999876    7888877654

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A

Probab=98.29  E-value=3.9e-06  Score=78.47  Aligned_cols=132  Identities=21%  Similarity=0.318  Sum_probs=74.4

Q ss_pred             hCCEEEEEccCCCCccchh-hhhh-hcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee-cCCCCc
Q psy2071          76 QNQCIVLVGETGSGKTTQI-PQWC-VEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF-EDCSSP  151 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll-~~i~-g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~  151 (302)
                      +|+.+.+.||+|||||+.. ..++ -..  ..| .+.+.  .|.+.-+.    ++...+.   +..+++.... ......
T Consensus         1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~--~~g~~~lvl--~Pt~~La~----Q~~~~~~---~~~v~~~~~~~~~~~~~   69 (431)
T 2v6i_A            1 KRELTVLDLHPGAGKTRRVLPQLVREAV--KKRLRTVIL--APTRVVAS----EMYEALR---GEPIRYMTPAVQSERTG   69 (431)
T ss_dssp             -CCEEEEECCTTSCTTTTHHHHHHHHHH--HTTCCEEEE--ESSHHHHH----HHHHHTT---TSCEEEC---------C
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHH--hCCCCEEEE--CcHHHHHH----HHHHHhC---CCeEEEEecCccccCCC
Confidence            4788999999999999963 2222 222  233 34332  24333222    2222221   1233332221 112223


Q ss_pred             cccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCH
Q psy2071         152 KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDA  219 (302)
Q Consensus       152 ~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~  219 (302)
                      .+.+..++.|...+..+....+.+.+++|+||+|.-....+.....+.++.. ..+..+.++++|...
T Consensus        70 ~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~-~~~~~~l~~SAT~~~  136 (431)
T 2v6i_A           70 NEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVS-MGDAGAIFMTATPPG  136 (431)
T ss_dssp             CCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-TTSCEEEEEESSCTT
T ss_pred             CceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhh-CCCCcEEEEeCCCCc
Confidence            4566778888877766666678899999999999864444444455555542 234578888988764

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.25  E-value=1e-06  Score=79.58  Aligned_cols=130  Identities=12%  Similarity=0.070  Sum_probs=82.6

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhh-hhccccccceeee
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSE-EMDCQLGQEVGYS  142 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~  142 (302)
                      +..++.+.--+.+|+++.|.|++|+|||||...++.......+.+.+......   ...+..++.. .....        
T Consensus        33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms---~~ql~~Rlls~~~~v~--------  101 (338)
T 4a1f_A           33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS---AEQLALRALSDLTSIN--------  101 (338)
T ss_dssp             CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC---HHHHHHHHHHHHHCCC--------
T ss_pred             ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC---HHHHHHHHHHHhhCCC--------
Confidence            34466666668999999999999999999998887765443345555443321   1112222211 10000        


Q ss_pred             eeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEe
Q psy2071         143 IRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT  216 (302)
Q Consensus       143 ~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~t  216 (302)
                             ...-.-..||.++.+|+..|...+.++++.|.|+   |...++.+...++.+.+...  +..+|++-
T Consensus       102 -------~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~---~~~si~~i~~~ir~l~~~~g--g~~lIVID  163 (338)
T 4a1f_A          102 -------MHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDK---SYVRIEQIRLQLRKLKSQHK--ELGIAFID  163 (338)
T ss_dssp             -------HHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECC---TTCCHHHHHHHHHHHHHHCT--TEEEEEEE
T ss_pred             -------HHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCC---CCCcHHHHHHHHHHHHHhcC--CCCEEEEe
Confidence                   0000113689999999999888888899999999   88888877666666654432  34555443

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.24  E-value=1.6e-06  Score=78.38  Aligned_cols=41  Identities=22%  Similarity=0.302  Sum_probs=35.9

Q ss_pred             hHHHHHHHHHHHhCCE--EEEEccCCCCccchhhhhhhccccc
Q psy2071          64 FEYRTEFMTLLAQNQC--IVLVGETGSGKTTQIPQWCVEYSKS  104 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i--~~liG~nGsGKSTll~~i~g~~~~~  104 (302)
                      ..+.+.+...++.|++  +.+.||+|+||||+++++++.+.+.
T Consensus        31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~   73 (340)
T 1sxj_C           31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK   73 (340)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            3467888999999998  9999999999999999999887644

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.22  E-value=3.5e-07  Score=76.50  Aligned_cols=41  Identities=22%  Similarity=0.084  Sum_probs=35.9

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ  114 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~  114 (302)
                      ..+|.+++|+|+|||||||+++.|++.+.+..|.+.+.+.+
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d   59 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD   59 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence            35688999999999999999999999998888888877655

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.22  E-value=9.6e-08  Score=79.96  Aligned_cols=122  Identities=16%  Similarity=0.137  Sum_probs=61.2

Q ss_pred             EEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH---HHHHHhhhhhccccccceeeeeeecCCCCccccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM---SVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVL  155 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  155 (302)
                      +++|+|++||||||+.+.++++     |...++.....+....   .....+...+        |.             .
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~~~~~~~~~~~~~~~i~~~~--------g~-------------~   57 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVVAREVVAKDSPLLSKIVEHF--------GA-------------Q   57 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHHHHHTTCSSCHHHHHHHHHH--------CT-------------T
T ss_pred             EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHHHHHHccCChHHHHHHHHHh--------CH-------------H
Confidence            6899999999999999999872     5555543221110000   0000000000        00             0


Q ss_pred             cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHH--HhhccCCCee
Q psy2071         156 KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKF--QQYFDNAPLM  232 (302)
Q Consensus       156 ~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~--~~~~d~~~~l  232 (302)
                      ...+.|+.+|..++.....+|+.+..++     ..+++.. ..+.+.+....  +.++++.+|.+.+.  ...||.++++
T Consensus        58 ~~~~~g~~~r~~l~~~~f~~~~~~~~l~-----~~~~p~v~~~~~~~~~~~~--~~~vv~~~~~l~e~~~~~~~d~vi~l  130 (206)
T 1jjv_A           58 ILTEQGELNRAALRERVFNHDEDKLWLN-----NLLHPAIRERMKQKLAEQT--APYTLFVVPLLIENKLTALCDRILVV  130 (206)
T ss_dssp             CC------CHHHHHHHHHTCHHHHHHHH-----HHHHHHHHHHHHHHHHTCC--SSEEEEECTTTTTTTCGGGCSEEEEE
T ss_pred             HhccCccccHHHHHHHHhCCHHHHHHHH-----hccCHHHHHHHHHHHHhcC--CCEEEEEechhhhcCcHhhCCEEEEE
Confidence            1124577777777766666665432222     2344444 34444443322  33566667876554  6778888887


Q ss_pred             e
Q psy2071         233 N  233 (302)
Q Consensus       233 ~  233 (302)
                      +
T Consensus       131 ~  131 (206)
T 1jjv_A          131 D  131 (206)
T ss_dssp             E
T ss_pred             E
Confidence            7

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.21  E-value=4.7e-07  Score=77.36  Aligned_cols=37  Identities=22%  Similarity=0.231  Sum_probs=32.6

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ  114 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~  114 (302)
                      .++|++++|.|+||||||||+++|++.    .|.+.+.+.+
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~   53 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP   53 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence            468999999999999999999999997    6788887654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.15  E-value=1.7e-06  Score=78.61  Aligned_cols=30  Identities=27%  Similarity=0.338  Sum_probs=25.9

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcccccC
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSV  105 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~  105 (302)
                      .+..++|.||+|+|||||++.++....+..
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~   73 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKF   73 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            467899999999999999999998776543

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.13  E-value=2.8e-07  Score=79.94  Aligned_cols=35  Identities=26%  Similarity=0.168  Sum_probs=31.9

Q ss_pred             HhCCEEEEEccCCCCccchhhhhh---hcccccCCCEE
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWC---VEYSKSVGAKA  109 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~---g~~~~~~G~~~  109 (302)
                      .+|++++|+|||||||||++++|+   |+..++.|.+.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~   62 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY   62 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence            689999999999999999999999   98888888765

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.11  E-value=6e-07  Score=73.44  Aligned_cols=37  Identities=16%  Similarity=0.185  Sum_probs=30.1

Q ss_pred             HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCC
Q psy2071          70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGA  107 (302)
Q Consensus        70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~  107 (302)
                      +.+.+.+| +.+|+|||||||||++.+|.+++.+..|.
T Consensus        20 ~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~   56 (182)
T 3kta_A           20 VVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK   56 (182)
T ss_dssp             EEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred             EEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence            34455567 99999999999999999999988766553

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.11  E-value=1.4e-05  Score=70.98  Aligned_cols=47  Identities=30%  Similarity=0.285  Sum_probs=40.6

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV  123 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~  123 (302)
                      +.+++++|+||+||||++..+++.+.+..+.+.+.+.++++.+...+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~q  144 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQ  144 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHH
Confidence            78999999999999999999999998888899998888776655443

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.10  E-value=7.8e-07  Score=77.11  Aligned_cols=38  Identities=24%  Similarity=0.172  Sum_probs=35.0

Q ss_pred             hHHHHHHHHHHHh---CCEEEEEccCCCCccchhhhhhhcc
Q psy2071          64 FEYRTEFMTLLAQ---NQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        64 ~~~~~~i~~~i~~---g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..+++++++.|.+   |++++|+|++||||||+.+.|++.+
T Consensus        32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            4578999999999   9999999999999999999998855

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.10  E-value=6.3e-06  Score=75.08  Aligned_cols=121  Identities=12%  Similarity=0.109  Sum_probs=62.7

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCC-Cccccc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCS-SPKTVL  155 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~  155 (302)
                      .-.++|+|++|+|||||++.+++....      +.........     ..+.   ... ..  +..+.+-+.. ......
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~~~~------~~~~~~~t~~-----~~~~---~~~-~~--~~~~~l~Dt~G~~~~~~  229 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTAKPE------IASYPFTTRG-----INVG---QFE-DG--YFRYQIIDTPGLLDRPI  229 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSSCCE------EECCTTCSSC-----EEEE---EEE-ET--TEEEEEEECTTTSSSCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCc------cCCCCCeeec-----eeEE---EEE-ec--CceEEEEeCCCccccch
Confidence            347999999999999999999875421      1110000000     0000   000 00  0111111111 112344


Q ss_pred             cccCHHHHHHHhccccCCCCCcEEEEc-CCCCCCcchHHH--HHHHHHHHHHcCCCcEEEEEEe--cCHH
Q psy2071         156 KYMTDGMLLREGMSDPMLENYQVILLD-EAHERTLATDIL--MGVLKEVIKQRADLKLVIMSAT--LDAG  220 (302)
Q Consensus       156 ~~lS~G~~qr~~la~al~~~p~lliLD-E~~~p~~~lD~~--~~~l~~ll~~~~~~~~~ii~~t--hd~~  220 (302)
                      ..+++++++.+. +.+...++-++++| +   +..++|..  ...+..+.....  +..++++.  ||+.
T Consensus       230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s---~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~  293 (357)
T 2e87_A          230 SERNEIEKQAIL-ALRYLGNLIIYIFDPS---EHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA  293 (357)
T ss_dssp             TTSCHHHHHHHH-GGGGTCSEEEEEECTT---CTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred             hhhhHHHHHHHH-HHHhcCCEEEEEEeCC---ccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence            567899988776 55556778889999 7   76655433  244444443322  33444444  7764

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=98.09  E-value=2.2e-05  Score=71.30  Aligned_cols=175  Identities=18%  Similarity=0.140  Sum_probs=82.0

Q ss_pred             CCCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhC--CEEEEEccCCCCccchh--hhhhhccccc-CCCEEEeecCc
Q psy2071          41 PFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQN--QCIVLVGETGSGKTTQI--PQWCVEYSKS-VGAKAVACTQP  115 (302)
Q Consensus        41 ~~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g--~i~~liG~nGsGKSTll--~~i~g~~~~~-~G~~~i~~~~~  115 (302)
                      +|......+...+......-..-+.+.......+-.|  ..+.+.+|+|||||+..  .++..+.... .+.+.+.  .|
T Consensus         6 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil--~P   83 (395)
T 3pey_A            6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICL--AP   83 (395)
T ss_dssp             SSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEE--CS
T ss_pred             CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEE--CC
Confidence            4555555555555443321112223344455556566  88999999999999853  3332222211 2344333  23


Q ss_pred             hhhhHHHHHHHhhhhhccccccceeeee--eecCCCCccccccccCHHHHHHHhccc-cCCCCCcEEEEcCCCCCCcchH
Q psy2071         116 RRVAAMSVAQRVSEEMDCQLGQEVGYSI--RFEDCSSPKTVLKYMTDGMLLREGMSD-PMLENYQVILLDEAHERTLATD  192 (302)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~lS~G~~qr~~la~-al~~~p~lliLDE~~~p~~~lD  192 (302)
                      .+.-+......+... .......+....  ...........+-..|.+......... ..+.+.++||+||+|.-....+
T Consensus        84 ~~~L~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~  162 (395)
T 3pey_A           84 SRELARQTLEVVQEM-GKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQG  162 (395)
T ss_dssp             SHHHHHHHHHHHHHH-TTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHHH-hcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccc
Confidence            332222222222211 101111111111  111111122345556777766544332 2367899999999875322111


Q ss_pred             HHHHHHHHHHHHc-CCCcEEEEEEecCH
Q psy2071         193 ILMGVLKEVIKQR-ADLKLVIMSATLDA  219 (302)
Q Consensus       193 ~~~~~l~~ll~~~-~~~~~~ii~~thd~  219 (302)
                       ....+..+.... ....++++++|...
T Consensus       163 -~~~~~~~~~~~~~~~~~~i~~SAT~~~  189 (395)
T 3pey_A          163 -LGDQCIRVKRFLPKDTQLVLFSATFAD  189 (395)
T ss_dssp             -HHHHHHHHHHTSCTTCEEEEEESCCCH
T ss_pred             -cHHHHHHHHHhCCCCcEEEEEEecCCH
Confidence             112333344333 23467888888764

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}

Probab=98.09  E-value=7.4e-06  Score=85.03  Aligned_cols=175  Identities=16%  Similarity=0.207  Sum_probs=98.5

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccccccee
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVG  140 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  140 (302)
                      ++.+.+.......+..|+.+.+.||+|||||+..-..+-..- ..|...+ ...|.+.-+......+...+.     .++
T Consensus       183 f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rvl-vl~PtraLa~Q~~~~l~~~~~-----~Vg  255 (1108)
T 3l9o_A          183 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVI-YTSPIKALSNQKYRELLAEFG-----DVG  255 (1108)
T ss_dssp             SCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEEE-EEESSHHHHHHHHHHHHHHTS-----SEE
T ss_pred             CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH-hcCCeEE-EEcCcHHHHHHHHHHHHHHhC-----Ccc
Confidence            344556677777889999999999999999987433322211 2333222 234554444444444443332     344


Q ss_pred             eeeeecCCCCccccccccCHHHHHHHhccccC-CCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcC-CCcEEEEEEec
Q psy2071         141 YSIRFEDCSSPKTVLKYMTDGMLLREGMSDPM-LENYQVILLDEAHERTLATDILM-GVLKEVIKQRA-DLKLVIMSATL  217 (302)
Q Consensus       141 ~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al-~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~th  217 (302)
                      +.. .......+..+-.+|.|........... +.+.++||+||+|.-   .|... ..+..++.... ...+++++||-
T Consensus       256 llt-Gd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l---~d~~rg~~~e~ii~~l~~~~qvl~lSATi  331 (1108)
T 3l9o_A          256 LMT-GDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM---RDKERGVVWEETIILLPDKVRYVFLSATI  331 (1108)
T ss_dssp             EEC-SSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGT---TSHHHHHHHHHHHHHSCTTSEEEEEECSC
T ss_pred             EEe-CccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhc---cccchHHHHHHHHHhcCCCceEEEEcCCC
Confidence            422 1112233455677888877665544433 678899999998842   22222 23334444333 45788899995


Q ss_pred             -CHHHHHhhcc-----CCCeeeecCcCCccceeec
Q psy2071         218 -DAGKFQQYFD-----NAPLMNVPGRTHPVEIFYT  246 (302)
Q Consensus       218 -d~~~~~~~~d-----~~~~l~i~g~~~~~~~~~~  246 (302)
                       +...+..+..     .+.++....+..|.+.+..
T Consensus       332 pn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~  366 (1108)
T 3l9o_A          332 PNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLF  366 (1108)
T ss_dssp             SSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEE
T ss_pred             CCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEe
Confidence             3334444432     2445555666667665543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.09  E-value=6.6e-07  Score=75.23  Aligned_cols=29  Identities=28%  Similarity=0.275  Sum_probs=26.9

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcccc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEYSK  103 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~  103 (302)
                      ++|++++|+|||||||||+++.|++.+++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            57999999999999999999999998765

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=98.07  E-value=6.6e-05  Score=63.08  Aligned_cols=189  Identities=14%  Similarity=0.121  Sum_probs=86.8

Q ss_pred             CCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeecCchhh
Q psy2071          42 FTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACTQPRRV  118 (302)
Q Consensus        42 ~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~~~~~~  118 (302)
                      |...+..+...+......--.-+.+.......+..|.-+.+.+|+|||||..  ++++..+.....| .+.+..  |.+.
T Consensus        16 f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~   93 (224)
T 1qde_A           16 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA--PTRE   93 (224)
T ss_dssp             GGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEEC--SSHH
T ss_pred             hhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEE--CCHH
Confidence            4444455555544433321122334555566677888899999999999975  3444333222223 333332  3322


Q ss_pred             hHHHHHHHhhh---hhccccccceeeeeeec-CCCCccccccccCHHHHHHHhc-cccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         119 AAMSVAQRVSE---EMDCQLGQEVGYSIRFE-DCSSPKTVLKYMTDGMLLREGM-SDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       119 ~~~~~~~~~~~---~~~~~~~~~v~~~~~~~-~~~~~~~~~~~lS~G~~qr~~l-a~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      -+......+..   ..+..+....+...... .....+..+-..|.|....... ....+.+.+++|+||+|.-   .+.
T Consensus        94 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~---~~~  170 (224)
T 1qde_A           94 LALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM---LSS  170 (224)
T ss_dssp             HHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH---HHT
T ss_pred             HHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHH---hhh
Confidence            22222222211   11111111111000000 0001113344566666544332 2334677899999998741   111


Q ss_pred             -HHHHHHHHHHHcC-CCcEEEEEEecCHH---HHHhhccCCCeeeec
Q psy2071         194 -LMGVLKEVIKQRA-DLKLVIMSATLDAG---KFQQYFDNAPLMNVP  235 (302)
Q Consensus       194 -~~~~l~~ll~~~~-~~~~~ii~~thd~~---~~~~~~d~~~~l~i~  235 (302)
                       ....+..++.... ...++++++|...+   .+..++..-..+.+.
T Consensus       171 ~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~  217 (224)
T 1qde_A          171 GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK  217 (224)
T ss_dssp             TCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred             hhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence             1133445554443 34578888898653   344555544444433

>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*

Probab=98.07  E-value=2e-05  Score=73.82  Aligned_cols=135  Identities=21%  Similarity=0.210  Sum_probs=75.8

Q ss_pred             HHhCCEEEEEccCCCCccchh--hhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee-cCCCC
Q psy2071          74 LAQNQCIVLVGETGSGKTTQI--PQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF-EDCSS  150 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll--~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~  150 (302)
                      +.+|+.+.+.||+|||||+..  +++..+.. ..+.+.+..  |.+.-+......+.   ..    .+.+.... .....
T Consensus         5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-~~~~~lil~--Ptr~La~Q~~~~l~---~~----~v~~~~~~~~~v~T   74 (440)
T 1yks_A            5 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR-RRLRTLVLA--PTRVVLSEMKEAFH---GL----DVKFHTQAFSAHGS   74 (440)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEE--SSHHHHHHHHHHTT---TS----CEEEESSCCCCCCC
T ss_pred             hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-cCCeEEEEc--chHHHHHHHHHHHh---cC----CeEEecccceeccC
Confidence            567899999999999999973  33322222 222344332  44433332222221   11    12222111 11223


Q ss_pred             ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCH
Q psy2071         151 PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDA  219 (302)
Q Consensus       151 ~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~  219 (302)
                      ..+.+..+..|...+..+....+.+.+++|+||+|.-..+.+.....+..+.. ..+..+.++++|...
T Consensus        75 p~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~  142 (440)
T 1yks_A           75 GREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPG  142 (440)
T ss_dssp             SSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTT
T ss_pred             CccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCc
Confidence            34455667777766666666678899999999999863333333345555443 234567888888753

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.06  E-value=1.3e-06  Score=72.97  Aligned_cols=28  Identities=18%  Similarity=0.359  Sum_probs=25.6

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhccc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      .+|++++|+||||||||||++.|++.++
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3799999999999999999999998765

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.04  E-value=1.6e-06  Score=70.49  Aligned_cols=37  Identities=22%  Similarity=0.244  Sum_probs=31.1

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP  115 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~  115 (302)
                      .+|++++|+|+|||||||+.+.+++.+    |.+.+.+...
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~   42 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL   42 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence            468999999999999999999998865    7777776544

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.04  E-value=1.6e-05  Score=74.01  Aligned_cols=47  Identities=28%  Similarity=0.323  Sum_probs=41.3

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHH
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMS  122 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~  122 (302)
                      ++++++++|+|||||||++..+++.+.+..+.+.+.+.++.+.++..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~  143 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE  143 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHH
Confidence            67899999999999999999999999988889999888877765543

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.03  E-value=1.2e-06  Score=73.07  Aligned_cols=36  Identities=22%  Similarity=0.154  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..+++++.+.+|++++|+|++||||||+.+.|+..+
T Consensus        14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999999999999998765

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.03  E-value=1.6e-05  Score=70.02  Aligned_cols=26  Identities=27%  Similarity=0.385  Sum_probs=22.9

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+..+.|.||+|+||||+.+.++...
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998754

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.01  E-value=1.8e-07  Score=88.88  Aligned_cols=107  Identities=18%  Similarity=0.064  Sum_probs=61.9

Q ss_pred             HHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhh--------ccccccceeeee
Q psy2071          72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEM--------DCQLGQEVGYSI  143 (302)
Q Consensus        72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~  143 (302)
                      ..+++|  +.|+||||||||||++++++...  .+.+.+.|.+...........++...+        ...+.+++....
T Consensus        61 ~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~  136 (499)
T 2dhr_A           61 ARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG  136 (499)
T ss_dssp             CCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTC
T ss_pred             CCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence            334455  89999999999999999999764  677788776532211001111111111        111222221111


Q ss_pred             eecCC----C------CccccccccCHHHHHHHhccccCCCCCcEEEEcCC
Q psy2071         144 RFEDC----S------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEA  184 (302)
Q Consensus       144 ~~~~~----~------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~  184 (302)
                      .....    .      ..+..+..|++|++++..++.+...+|++  |||+
T Consensus       137 ~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~--LD~a  185 (499)
T 2dhr_A          137 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPA  185 (499)
T ss_dssp             CCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred             HhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhh--cCcc
Confidence            00000    0      01234456899999999999999999987  8883

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.01  E-value=4.6e-06  Score=69.28  Aligned_cols=31  Identities=26%  Similarity=0.270  Sum_probs=25.1

Q ss_pred             CEEEEEccCCCCccchhhhhhhcccccCCCE
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEYSKSVGAK  108 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~~~~~G~~  108 (302)
                      ..+.|.||+|+||||+++.++.........+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~   85 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS   85 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            7899999999999999999988765433333

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.01  E-value=1.6e-06  Score=78.54  Aligned_cols=53  Identities=17%  Similarity=0.225  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR  117 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~  117 (302)
                      .+++++++.+.++.+++|+|++|+||||+++.+++.+.+..|.+.+.+.++..
T Consensus        44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~   96 (341)
T 2p67_A           44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS   96 (341)
T ss_dssp             HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence            45677777888999999999999999999999999998888888887776643

>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}

Probab=98.00  E-value=2.3e-05  Score=77.17  Aligned_cols=136  Identities=24%  Similarity=0.256  Sum_probs=77.5

Q ss_pred             HHHhCCEEEEEccCCCCccch--hhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee-ecCCC
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR-FEDCS  149 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~  149 (302)
                      .+.+|+.+.+.||+|||||+.  ++++.-+.. ..+.+.+..  |.+.-+..+...+..   .    .+++... +....
T Consensus       237 ~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-~~~~~lila--PTr~La~Q~~~~l~~---~----~i~~~~~~l~~v~  306 (673)
T 2wv9_A          237 MLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-KRLRTAVLA--PTRVVAAEMAEALRG---L----PVRYLTPAVQREH  306 (673)
T ss_dssp             GGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-TTCCEEEEE--SSHHHHHHHHHHTTT---S----CCEECCC---CCC
T ss_pred             HHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEc--cHHHHHHHHHHHHhc---C----CeeeecccccccC
Confidence            445899999999999999996  333322222 223343332  444333333322211   1    1222211 11122


Q ss_pred             CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCH
Q psy2071         150 SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDA  219 (302)
Q Consensus       150 ~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~  219 (302)
                      ...+.+..++.|...+..+....+.+.+++|+||+|.-....+.....+.+++.. ....+.++++|...
T Consensus       307 tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~-~~~~vl~~SAT~~~  375 (673)
T 2wv9_A          307 SGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEA-GEAAAIFMTATPPG  375 (673)
T ss_dssp             CSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHHT-TSCEEEEECSSCTT
T ss_pred             CHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhccc-cCCcEEEEcCCCCh
Confidence            3345566678887766666666788999999999998644444444555555432 34568888888753

>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A

Probab=98.00  E-value=1.7e-05  Score=81.47  Aligned_cols=173  Identities=21%  Similarity=0.269  Sum_probs=94.9

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceee
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGY  141 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  141 (302)
                      ......+...+..|+.+.+.+|+|||||+.  +.+...   ...|...+ ...|.+.-+..+...+...+.   +..++.
T Consensus        41 ~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~---~~~g~~vl-vl~PtraLa~Q~~~~l~~~~~---~~~v~~  113 (997)
T 4a4z_A           41 DTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMA---HRNMTKTI-YTSPIKALSNQKFRDFKETFD---DVNIGL  113 (997)
T ss_dssp             CHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH---HHTTCEEE-EEESCGGGHHHHHHHHHTTC-----CCEEE
T ss_pred             CHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHH---HhcCCeEE-EEeCCHHHHHHHHHHHHHHcC---CCeEEE
Confidence            344566677888999999999999999974  222221   12333222 234444433444444433221   112222


Q ss_pred             eeeecCCCCccccccccCHHHHHHHhcc-ccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHc-CCCcEEEEEEec-C
Q psy2071         142 SIRFEDCSSPKTVLKYMTDGMLLREGMS-DPMLENYQVILLDEAHERTLATDILMGVLKEVIKQR-ADLKLVIMSATL-D  218 (302)
Q Consensus       142 ~~~~~~~~~~~~~~~~lS~G~~qr~~la-~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~-~~~~~~ii~~th-d  218 (302)
                      ... ......+..+-..|.|........ ...+.+.++||+||+|. ....+.. ..+.+++... ....+++++||- +
T Consensus       114 l~G-~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~-l~d~~~g-~~~e~ii~~l~~~v~iIlLSAT~~n  190 (997)
T 4a4z_A          114 ITG-DVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHY-VNDQDRG-VVWEEVIIMLPQHVKFILLSATVPN  190 (997)
T ss_dssp             ECS-SCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTC-CCTTCTT-CCHHHHHHHSCTTCEEEEEECCCTT
T ss_pred             EeC-CCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECccc-ccccchH-HHHHHHHHhcccCCCEEEEcCCCCC
Confidence            211 111122345566788877554432 33567899999999984 2222111 1122333333 345788999996 6


Q ss_pred             HHHHHhhcc-----CCCeeeecCcCCccceeec
Q psy2071         219 AGKFQQYFD-----NAPLMNVPGRTHPVEIFYT  246 (302)
Q Consensus       219 ~~~~~~~~d-----~~~~l~i~g~~~~~~~~~~  246 (302)
                      ...+.++.+     .+.++...++..|.+.+..
T Consensus       191 ~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~  223 (997)
T 4a4z_A          191 TYEFANWIGRTKQKNIYVISTPKRPVPLEINIW  223 (997)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEE
T ss_pred             hHHHHHHHhcccCCceEEEecCCCCccceEEEe
Confidence            666666664     3456666777778776543

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.99  E-value=1.5e-06  Score=83.64  Aligned_cols=41  Identities=17%  Similarity=0.196  Sum_probs=35.6

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEE-Eeec
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKA-VACT  113 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~-i~~~  113 (302)
                      .+++|++++|+|+|||||||++++|++.+.|+.| .+. +++.
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD  407 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD  407 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence            4679999999999999999999999999999886 675 5553

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.99  E-value=2.1e-06  Score=77.38  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHhC--CEEEEEccCCCCccchhhhhhhccc
Q psy2071          66 YRTEFMTLLAQN--QCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        66 ~~~~i~~~i~~g--~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      ..+.+...+..|  ..+.|.||+|+||||+++.++..+.
T Consensus        45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            356667777777  4599999999999999999988754

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.97  E-value=8.9e-06  Score=76.23  Aligned_cols=27  Identities=19%  Similarity=0.187  Sum_probs=23.3

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcccc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSK  103 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~  103 (302)
                      +..+.|.||+|+|||||++.++.....
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~  156 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ  156 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            457999999999999999999887643

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.97  E-value=6.4e-07  Score=86.25  Aligned_cols=44  Identities=16%  Similarity=0.235  Sum_probs=33.9

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEe
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA  111 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~  111 (302)
                      ..+++..+ +|++++|+|||||||||+++++++.+.+..|.+.+.
T Consensus        99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~  142 (543)
T 3m6a_A           99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG  142 (543)
T ss_dssp             HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred             HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence            33444444 699999999999999999999999987666655443

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=97.96  E-value=2.3e-05  Score=71.92  Aligned_cols=175  Identities=13%  Similarity=0.066  Sum_probs=89.4

Q ss_pred             CCCCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhh--hhhhcccc-cCCCEEEeecCch
Q psy2071          40 NPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIP--QWCVEYSK-SVGAKAVACTQPR  116 (302)
Q Consensus        40 ~~~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~--~i~g~~~~-~~G~~~i~~~~~~  116 (302)
                      ++|...+..+.+.+......-...+.+.......+..|.-+.+.+|+|||||+..-  ++..+... ..+.+.+.  .|.
T Consensus        40 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil--~P~  117 (414)
T 3eiq_A           40 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVL--APT  117 (414)
T ss_dssp             CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEE--CSS
T ss_pred             cCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEE--eCh
Confidence            45566677777776655543334445566666677788889999999999998642  22222221 22333332  233


Q ss_pred             hhhHHHHHHHhhhhhccccccceeeeeeecC-------CCCccccccccCHHHHHHHhccccC-CCCCcEEEEcCCCCCC
Q psy2071         117 RVAAMSVAQRVSEEMDCQLGQEVGYSIRFED-------CSSPKTVLKYMTDGMLLREGMSDPM-LENYQVILLDEAHERT  188 (302)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~lS~G~~qr~~la~al-~~~p~lliLDE~~~p~  188 (302)
                      +.-+......+.... ......+........       .......+-..|.|...+......+ ..+.++||+||+|.- 
T Consensus       118 ~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~-  195 (414)
T 3eiq_A          118 RELAQQIQKVVMALG-DYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM-  195 (414)
T ss_dssp             HHHHHHHHHHHHHHG-GGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHH-
T ss_pred             HHHHHHHHHHHHHHh-cccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHh-
Confidence            322222222222111 111111111111000       0012224455777877665544433 566899999998751 


Q ss_pred             cchHHH-HHHHHHHHHHc-CCCcEEEEEEecCHH
Q psy2071         189 LATDIL-MGVLKEVIKQR-ADLKLVIMSATLDAG  220 (302)
Q Consensus       189 ~~lD~~-~~~l~~ll~~~-~~~~~~ii~~thd~~  220 (302)
                        .+.. ...+..++... ....++++++|...+
T Consensus       196 --~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~  227 (414)
T 3eiq_A          196 --LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSD  227 (414)
T ss_dssp             --HHTTTHHHHHHHHTTSCTTCEEEEECSCCCHH
T ss_pred             --hccCcHHHHHHHHHhCCCCCeEEEEEEecCHH
Confidence              1211 13445555544 344678888887543

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.94  E-value=7.2e-06  Score=74.35  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=27.8

Q ss_pred             HHHHHH-HHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071          67 RTEFMT-LLAQNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        67 ~~~i~~-~i~~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++.+.- -+++|+++.|.|++|||||||..+++..
T Consensus       111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            444432 4679999999999999999999998875

>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}

Probab=97.94  E-value=9.6e-05  Score=63.61  Aligned_cols=173  Identities=20%  Similarity=0.198  Sum_probs=87.3

Q ss_pred             CCCCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeecCch
Q psy2071          40 NPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACTQPR  116 (302)
Q Consensus        40 ~~~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~~~~  116 (302)
                      .+|..+...+.+.+......-...+.+.......+..|+-+.+.+|+|||||+.  +.++..+.....+ .+.+.  .|.
T Consensus        43 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil--~Pt  120 (249)
T 3ber_A           43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVL--TPT  120 (249)
T ss_dssp             CCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEE--CSS
T ss_pred             CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEE--eCC
Confidence            446666666777665554432233445566666777889999999999999985  3333332222222 34333  233


Q ss_pred             hhhHHHHHHHhhhhhccccccceeeeeeecCCC--------CccccccccCHHHHHHHhcc--ccCCCCCcEEEEcCCCC
Q psy2071         117 RVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCS--------SPKTVLKYMTDGMLLREGMS--DPMLENYQVILLDEAHE  186 (302)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~lS~G~~qr~~la--~al~~~p~lliLDE~~~  186 (302)
                      +.-+..+...+..... ..+-.++..  .....        .....+-..|.|...+....  ...+.+.++||+||+|.
T Consensus       121 r~L~~q~~~~~~~~~~-~~~~~~~~~--~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~  197 (249)
T 3ber_A          121 RELAFQISEQFEALGS-SIGVQSAVI--VGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR  197 (249)
T ss_dssp             HHHHHHHHHHHHHHHG-GGTCCEEEE--CTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHH
T ss_pred             HHHHHHHHHHHHHHhc-cCCeeEEEE--ECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhh
Confidence            3222222222211110 001111111  11110        01123445677776554332  22467889999999762


Q ss_pred             CCcchHH-HHHHHHHHHHHcC-CCcEEEEEEecCHH
Q psy2071         187 RTLATDI-LMGVLKEVIKQRA-DLKLVIMSATLDAG  220 (302)
Q Consensus       187 p~~~lD~-~~~~l~~ll~~~~-~~~~~ii~~thd~~  220 (302)
                         -++. ....+..++.... ...+.++++|...+
T Consensus       198 ---l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~  230 (249)
T 3ber_A          198 ---ILNMDFETEVDKILKVIPRDRKTFLFSATMTKK  230 (249)
T ss_dssp             ---HHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHH
T ss_pred             ---hhccChHHHHHHHHHhCCCCCeEEEEeccCCHH
Confidence               1121 1133445555443 44678888987643

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.94  E-value=2.4e-06  Score=78.44  Aligned_cols=43  Identities=16%  Similarity=0.155  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEE
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV  110 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i  110 (302)
                      .+.+++++.+++|++++|+||||||||||++.+++..   .|.+..
T Consensus       157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~  199 (377)
T 1svm_A          157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN  199 (377)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred             HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence            4678899999999999999999999999999999853   565443

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.92  E-value=3.7e-05  Score=71.73  Aligned_cols=110  Identities=21%  Similarity=0.291  Sum_probs=63.5

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcccccc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK  156 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  156 (302)
                      +.+++++|++|+||||++..|+..+......+.+...++.+.++..+........+.        .+.  ........  
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gv--------pv~--~~~~~~dp--  167 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHI--------EVF--GNPQEKDA--  167 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTC--------EEE--CCTTCCCH--
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCC--------cEE--ecCCCCCH--
Confidence            568999999999999999999887765444777777777777665554444332221        111  10001111  


Q ss_pred             ccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH-HHHHHHHHHHHH
Q psy2071         157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD-ILMGVLKEVIKQ  204 (302)
Q Consensus       157 ~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD-~~~~~l~~ll~~  204 (302)
                          ....+-++..+-..+++++|+|.++.  ...| .....+..+...
T Consensus       168 ----~~i~~~al~~a~~~~~DvVIIDTaGr--l~~d~~lm~el~~i~~~  210 (443)
T 3dm5_A          168 ----IKLAKEGVDYFKSKGVDIIIVDTAGR--HKEDKALIEEMKQISNV  210 (443)
T ss_dssp             ----HHHHHHHHHHHHHTTCSEEEEECCCC--SSCCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhCCCCEEEEECCCc--ccchHHHHHHHHHHHHh
Confidence                11122234444445799999999643  2233 333445555443

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.92  E-value=4e-05  Score=64.34  Aligned_cols=37  Identities=19%  Similarity=0.212  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHhCC---EEEEEccCCCCccchhhhhhhccc
Q psy2071          66 YRTEFMTLLAQNQ---CIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        66 ~~~~i~~~i~~g~---i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      ..+.+...+..+.   .+.|.||+|+||||+++.++....
T Consensus        31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4556666777776   899999999999999999987654

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.92  E-value=8e-06  Score=73.12  Aligned_cols=123  Identities=7%  Similarity=0.052  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeee
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSI  143 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  143 (302)
                      +..++++.--+.+|+++.|.|++|+||||+.-+++.........+.+......   ...+..++.....       ++. 
T Consensus        55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s---~~~l~~R~~~~~~-------~i~-  123 (315)
T 3bh0_A           55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG---KKENIKRLIVTAG-------SIN-  123 (315)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC---HHHHHHHHHHHHT-------TCC-
T ss_pred             hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC---HHHHHHHHHHHHc-------CCC-
Confidence            44577777668999999999999999999988887543322223444333211   1111122111000       000 


Q ss_pred             eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHH
Q psy2071         144 RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQ  204 (302)
Q Consensus       144 ~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~  204 (302)
                       ....  .... ..||.++++|+..|...+.++.+.+.|+   +...++.+...+..+...
T Consensus       124 -~~~l--~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~---~~~~~~~i~~~i~~l~~~  177 (315)
T 3bh0_A          124 -AQKI--KAAR-RDFASEDWGKLSMAIGEISNSNINIFDK---AGQSVNYIWSKTRQTKRK  177 (315)
T ss_dssp             -HHHH--HSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECC---SCCBHHHHHHHHHHHHHT
T ss_pred             -HHHH--hcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECC---CCCCHHHHHHHHHHHHHh
Confidence             0000  0000 2378889999888877777889999999   877788776666666544

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.90  E-value=3.3e-06  Score=76.77  Aligned_cols=41  Identities=22%  Similarity=0.243  Sum_probs=36.1

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR  117 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~  117 (302)
                      +.+++|+|++|||||||++.++|.+.+..|.+.+.+.++..
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~  114 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS  114 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence            67999999999999999999999999888999998877643

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.90  E-value=1.5e-05  Score=67.41  Aligned_cols=28  Identities=32%  Similarity=0.387  Sum_probs=24.2

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYSK  103 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~~  103 (302)
                      .+..+.|.||+|+||||+++.++.....
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~   78 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANE   78 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999998876543

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=97.90  E-value=0.00015  Score=60.03  Aligned_cols=148  Identities=20%  Similarity=0.226  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYS  142 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  142 (302)
                      +.......+..|.-+.+.+|+|||||..  ++++..+.....| .+.+..  |.+.-+......+...........+...
T Consensus        29 ~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~  106 (206)
T 1vec_A           29 IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIV--PTRELALQVSQICIQVSKHMGGAKVMAT  106 (206)
T ss_dssp             HHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEEC--SCHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred             HHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEe--CcHHHHHHHHHHHHHHHhhcCCceEEEE
Confidence            4455566677888899999999999963  3333322221222 333332  3222222222222111110001111111


Q ss_pred             eeecCCC--------CccccccccCHHHHHHHhc-cccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcC-CCcEEE
Q psy2071         143 IRFEDCS--------SPKTVLKYMTDGMLLREGM-SDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRA-DLKLVI  212 (302)
Q Consensus       143 ~~~~~~~--------~~~~~~~~lS~G~~qr~~l-a~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~-~~~~~i  212 (302)
                      .  ....        .....+-..|.|......- ....+.+.+++|+||+|.-.. .+ ....+..++.... ...+.+
T Consensus       107 ~--g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~-~~-~~~~l~~i~~~~~~~~~~l~  182 (206)
T 1vec_A          107 T--GGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS-QD-FVQIMEDIILTLPKNRQILL  182 (206)
T ss_dssp             C--SSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS-TT-THHHHHHHHHHSCTTCEEEE
T ss_pred             e--CCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHh-hC-cHHHHHHHHHhCCccceEEE
Confidence            1  1100        0112234456665544332 223467889999999874221 11 1234445555444 446788


Q ss_pred             EEEecCH
Q psy2071         213 MSATLDA  219 (302)
Q Consensus       213 i~~thd~  219 (302)
                      +++|...
T Consensus       183 ~SAT~~~  189 (206)
T 1vec_A          183 YSATFPL  189 (206)
T ss_dssp             EESCCCH
T ss_pred             EEeeCCH
Confidence            8888754

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}

Probab=97.89  E-value=0.00012  Score=62.55  Aligned_cols=166  Identities=17%  Similarity=0.166  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccc--hhhhhhhccccc-CC-CEEEeecCchhhhHHHHHHHhhhhhcccccccee
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTT--QIPQWCVEYSKS-VG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVG  140 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKST--ll~~i~g~~~~~-~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  140 (302)
                      .+.......+..|.-+.+.+|+|||||.  +++++..+..+. .| .+.+.  .|.+.-+..+...+..... ..+..+.
T Consensus        54 ~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil--~Pt~~L~~q~~~~~~~~~~-~~~~~~~  130 (245)
T 3dkp_A           54 PIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALII--SPTRELASQIHRELIKISE-GTGFRIH  130 (245)
T ss_dssp             HHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEE--CSSHHHHHHHHHHHHHHTT-TSCCCEE
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEE--eCCHHHHHHHHHHHHHHhc-ccCceEE
Confidence            3455555667788889999999999997  355544433322 23 23332  2333222222222211111 0011111


Q ss_pred             eee-------eecCCCCccccccccCHHHHHHHhccc---cCCCCCcEEEEcCCCCCCcc-hHHHHHHHHHHHHHcC--C
Q psy2071         141 YSI-------RFEDCSSPKTVLKYMTDGMLLREGMSD---PMLENYQVILLDEAHERTLA-TDILMGVLKEVIKQRA--D  207 (302)
Q Consensus       141 ~~~-------~~~~~~~~~~~~~~lS~G~~qr~~la~---al~~~p~lliLDE~~~p~~~-lD~~~~~l~~ll~~~~--~  207 (302)
                      ...       .+.........+-..|.|.........   ..+.+.+++|+||+|.-... .......+..++....  .
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~  210 (245)
T 3dkp_A          131 MIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK  210 (245)
T ss_dssp             CCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTT
T ss_pred             EEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCC
Confidence            000       000111112234456777665544332   34678999999997642110 0012234455554432  3


Q ss_pred             CcEEEEEEecCHH---HHHhhccCCCeee
Q psy2071         208 LKLVIMSATLDAG---KFQQYFDNAPLMN  233 (302)
Q Consensus       208 ~~~~ii~~thd~~---~~~~~~d~~~~l~  233 (302)
                      ..+.+++||..-+   .+..+..+...+.
T Consensus       211 ~~~~~~SAT~~~~v~~~~~~~l~~p~~i~  239 (245)
T 3dkp_A          211 VRRAMFSATFAYDVEQWCKLNLDNVISVS  239 (245)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHSSSCEEEE
T ss_pred             cEEEEEeccCCHHHHHHHHHhCCCCEEEE
Confidence            4678888987532   2334444444454

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B

Probab=97.89  E-value=9.4e-05  Score=67.65  Aligned_cols=177  Identities=14%  Similarity=0.135  Sum_probs=84.6

Q ss_pred             CCCCCCCCChhhHHHHHhh-cCCChhHHHHHHHHHHHhC--CEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeec
Q psy2071          40 NPFTGYPYTPRYHELHRKR-ITLPVFEYRTEFMTLLAQN--QCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACT  113 (302)
Q Consensus        40 ~~~~~~~~~~~~~~l~~~r-~~lp~~~~~~~i~~~i~~g--~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~  113 (302)
                      .+|......+...+..... ..-| ..+.......+..|  ..+.+.+|+|||||..  ++++..+.....+ .+.+.  
T Consensus        25 ~~f~~~~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil--  101 (412)
T 3fht_A           25 KSFEELRLKPQLLQGVYAMGFNRP-SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL--  101 (412)
T ss_dssp             SCTGGGTCCHHHHHHHHHTTCCSC-CHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE--
T ss_pred             CCHhhCCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEE--
Confidence            3455555555555544332 2222 23344445555555  8899999999999985  3333333222222 34333  


Q ss_pred             CchhhhHHHHHHHhhhhhccccccceeeeeeecCC---CCccccccccCHHHHHHHhccc--cCCCCCcEEEEcCCCCCC
Q psy2071         114 QPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDC---SSPKTVLKYMTDGMLLREGMSD--PMLENYQVILLDEAHERT  188 (302)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~lS~G~~qr~~la~--al~~~p~lliLDE~~~p~  188 (302)
                      .|.+.-+..+...+...........+++.......   ......+-..|.|...+.....  .-+.+.++||+||+|.-.
T Consensus       102 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~  181 (412)
T 3fht_A          102 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI  181 (412)
T ss_dssp             CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHh
Confidence            34333333332222221111111222222211111   1112245567888776655332  234789999999987421


Q ss_pred             cchHHHHHHHHHHHHHcC-CCcEEEEEEecCHH
Q psy2071         189 LATDILMGVLKEVIKQRA-DLKLVIMSATLDAG  220 (302)
Q Consensus       189 ~~lD~~~~~l~~ll~~~~-~~~~~ii~~thd~~  220 (302)
                      .... ....+..+..... ...++++++|...+
T Consensus       182 ~~~~-~~~~~~~~~~~~~~~~~~i~~SAT~~~~  213 (412)
T 3fht_A          182 ATQG-HQDQSIRIQRMLPRNCQMLLFSATFEDS  213 (412)
T ss_dssp             STTT-THHHHHHHHHTSCTTCEEEEEESCCCHH
T ss_pred             hcCC-cHHHHHHHHhhCCCCceEEEEEeecCHH
Confidence            1001 1122223333322 34678888887653

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.89  E-value=1e-05  Score=72.68  Aligned_cols=35  Identities=26%  Similarity=0.275  Sum_probs=28.2

Q ss_pred             HHHHH-HHHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          67 RTEFM-TLLAQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        67 ~~~i~-~~i~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++.+. --+++|+++.|.|++||||||+..+++...
T Consensus        96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A           96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            44443 246899999999999999999998887653

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.88  E-value=2.4e-06  Score=70.47  Aligned_cols=25  Identities=24%  Similarity=0.526  Sum_probs=22.6

Q ss_pred             EEEEEccCCCCccchhhhhhhcccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSK  103 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~  103 (302)
                      .++|+|+||||||||++.++|...+
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~   55 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFN   55 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCC
Confidence            5899999999999999999997654

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.87  E-value=3.2e-06  Score=68.35  Aligned_cols=27  Identities=33%  Similarity=0.458  Sum_probs=24.3

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      .|.+++|+|+|||||||+.+.|++.+.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999998764

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}

Probab=97.86  E-value=0.00019  Score=60.44  Aligned_cols=147  Identities=20%  Similarity=0.219  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccc--hhhhhhhcccc-------cCCCEEEeecCchhhhHHHHHHHhhhhhccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTT--QIPQWCVEYSK-------SVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLG  136 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKST--ll~~i~g~~~~-------~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (302)
                      +.......+..|.-+.+.+|+|||||.  +++++..+...       ..+.+.+..  |.+.-+..+...+......  +
T Consensus        46 ~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~--~  121 (228)
T 3iuy_A           46 IQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLT--PTRELALHVEAECSKYSYK--G  121 (228)
T ss_dssp             HHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEEC--SSHHHHHHHHHHHHHHCCT--T
T ss_pred             HHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEe--CCHHHHHHHHHHHHHhccc--C
Confidence            345555667788889999999999997  44444332211       112333322  3332222222222221100  1


Q ss_pred             cceeeeeeecCCCC------ccccccccCHHHHHHHhcccc-CCCCCcEEEEcCCCCCCcchHH-HHHHHHHHHHHcC-C
Q psy2071         137 QEVGYSIRFEDCSS------PKTVLKYMTDGMLLREGMSDP-MLENYQVILLDEAHERTLATDI-LMGVLKEVIKQRA-D  207 (302)
Q Consensus       137 ~~v~~~~~~~~~~~------~~~~~~~lS~G~~qr~~la~a-l~~~p~lliLDE~~~p~~~lD~-~~~~l~~ll~~~~-~  207 (302)
                      ..+...........      ....+-..|.|.......... .+.+.+++|+||+|.   -++. ....+..++.... +
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~---~~~~~~~~~~~~i~~~~~~~  198 (228)
T 3iuy_A          122 LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADK---MLDMEFEPQIRKILLDVRPD  198 (228)
T ss_dssp             CCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHH---HHHTTCHHHHHHHHHHSCSS
T ss_pred             ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHH---HhccchHHHHHHHHHhCCcC
Confidence            11111100000000      011344567777665443333 367899999999763   1111 1134445555443 4


Q ss_pred             CcEEEEEEecCH
Q psy2071         208 LKLVIMSATLDA  219 (302)
Q Consensus       208 ~~~~ii~~thd~  219 (302)
                      ..+.++++|..-
T Consensus       199 ~~~l~~SAT~~~  210 (228)
T 3iuy_A          199 RQTVMTSATWPD  210 (228)
T ss_dssp             CEEEEEESCCCH
T ss_pred             CeEEEEEeeCCH
Confidence            467788888654

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.86  E-value=7.4e-06  Score=72.78  Aligned_cols=28  Identities=21%  Similarity=0.355  Sum_probs=25.2

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +..+..+.|.||+||||||+.+.++...
T Consensus        46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           46 MTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            4678899999999999999999998865

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}

Probab=97.83  E-value=0.00013  Score=68.69  Aligned_cols=176  Identities=14%  Similarity=0.137  Sum_probs=81.3

Q ss_pred             CCCCCCCChhhHHHHHhh-cCCChhHHHHHHHHHHHhC--CEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeecC
Q psy2071          41 PFTGYPYTPRYHELHRKR-ITLPVFEYRTEFMTLLAQN--QCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACTQ  114 (302)
Q Consensus        41 ~~~~~~~~~~~~~l~~~r-~~lp~~~~~~~i~~~i~~g--~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~~  114 (302)
                      +|......+...+..... ..-| +.+.......+-.|  ..+.+.||+|||||..  ++++..+.....+ .+.+  ..
T Consensus        93 ~f~~~~l~~~l~~~l~~~g~~~p-~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~li--l~  169 (479)
T 3fmp_B           93 SFEELRLKPQLLQGVYAMGFNRP-SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLC--LS  169 (479)
T ss_dssp             CSGGGTCCHHHHHHHHHTTCCSC-CHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEE--EC
T ss_pred             CHHHcCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEE--Ee
Confidence            344444455444433322 2222 22344444555555  8999999999999975  3333333221112 3333  23


Q ss_pred             chhhhHHHHHHHhhhhhccccccceeeeeeecC---CCCccccccccCHHHHHHHhcccc--CCCCCcEEEEcCCCCCCc
Q psy2071         115 PRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFED---CSSPKTVLKYMTDGMLLREGMSDP--MLENYQVILLDEAHERTL  189 (302)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~lS~G~~qr~~la~a--l~~~p~lliLDE~~~p~~  189 (302)
                      |.+.-+..+...+...........+.+......   .......+-..+.|..........  -+.+.++||+||+|.-..
T Consensus       170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~  249 (479)
T 3fmp_B          170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA  249 (479)
T ss_dssp             SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhh
Confidence            433322222222221111111112222221111   111122455577777766554322  347899999999874221


Q ss_pred             chHHHHHHHHHHHHHcC-CCcEEEEEEecCHH
Q psy2071         190 ATDILMGVLKEVIKQRA-DLKLVIMSATLDAG  220 (302)
Q Consensus       190 ~lD~~~~~l~~ll~~~~-~~~~~ii~~thd~~  220 (302)
                      ... ....+..+..... ...++++++|...+
T Consensus       250 ~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~~  280 (479)
T 3fmp_B          250 TQG-HQDQSIRIQRMLPRNCQMLLFSATFEDS  280 (479)
T ss_dssp             STT-HHHHHHHHHTTSCTTSEEEEEESCCCHH
T ss_pred             cCC-cHHHHHHHHhhCCccceEEEEeCCCCHH
Confidence            111 1122333333332 34678888887664

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.79  E-value=5.1e-05  Score=64.42  Aligned_cols=27  Identities=15%  Similarity=0.095  Sum_probs=21.8

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+|.++.+.|+.|+||||++-.++.-+
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            578999999999999999876665444

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.73  E-value=1.9e-05  Score=69.10  Aligned_cols=27  Identities=30%  Similarity=0.357  Sum_probs=23.5

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..+..+.|.||+|+||||+.+.++...
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            567789999999999999999997654

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.73  E-value=7e-06  Score=76.63  Aligned_cols=32  Identities=16%  Similarity=0.325  Sum_probs=27.6

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccC
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSV  105 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~  105 (302)
                      +..|++++|+|||||||||++.+|+++..+.+
T Consensus        23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~   54 (430)
T 1w1w_A           23 FGESNFTSIIGPNGSGKSNMMDAISFVLGVRS   54 (430)
T ss_dssp             CTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence            45689999999999999999999999887754

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.73  E-value=0.00018  Score=59.60  Aligned_cols=36  Identities=14%  Similarity=0.276  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHhCC--EEEEEccCCCCccchhhhhhhcc
Q psy2071          66 YRTEFMTLLAQNQ--CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        66 ~~~~i~~~i~~g~--i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..+.+...+..+.  .+.|.||.|+||||+++.++..+
T Consensus        25 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             HHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3445555565553  48999999999999999887643

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.72  E-value=6.5e-05  Score=68.16  Aligned_cols=28  Identities=25%  Similarity=0.239  Sum_probs=24.0

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhccc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      ..+..+.|.||+|+||||+++.++....
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999987654

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=97.72  E-value=0.00028  Score=59.03  Aligned_cols=172  Identities=16%  Similarity=0.169  Sum_probs=79.8

Q ss_pred             CCCCCCCCChhhHHHHHhhcCCC-hhHHHHHHHHHHHhCCEEEEEccCCCCccchh--hhhhhcccccCC--CEEEeecC
Q psy2071          40 NPFTGYPYTPRYHELHRKRITLP-VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQI--PQWCVEYSKSVG--AKAVACTQ  114 (302)
Q Consensus        40 ~~~~~~~~~~~~~~l~~~r~~lp-~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll--~~i~g~~~~~~G--~~~i~~~~  114 (302)
                      +.|......+...+..... .+. -..+.......+..|.-+.+.+|+|+|||...  .++..+ ....+  .+.+..  
T Consensus        14 ~~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~-~~~~~~~~~lil~--   89 (220)
T 1t6n_A           14 SGFRDFLLKPELLRAIVDC-GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-EPVTGQVSVLVMC--   89 (220)
T ss_dssp             CCSTTSCCCHHHHHHHHHT-TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHC-CCCTTCCCEEEEC--
T ss_pred             CCHhhcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhh-hccCCCEEEEEEe--
Confidence            3455555555555444332 121 23344555556667888999999999999743  333222 22222  343332  


Q ss_pred             chhhhHHHHHHHhhhhhccccccceeeeeeecCCCC---------ccccccccCHHHHHHHhc-cccCCCCCcEEEEcCC
Q psy2071         115 PRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSS---------PKTVLKYMTDGMLLREGM-SDPMLENYQVILLDEA  184 (302)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------~~~~~~~lS~G~~qr~~l-a~al~~~p~lliLDE~  184 (302)
                      |.+.-+......+........+..+....  .....         ....+-..|.|......- ....+.+.+++|+||+
T Consensus        90 Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~--g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa  167 (220)
T 1t6n_A           90 HTRELAFQISKEYERFSKYMPNVKVAVFF--GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC  167 (220)
T ss_dssp             SCHHHHHHHHHHHHHHTTTSTTCCEEEES--CCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESH
T ss_pred             CCHHHHHHHHHHHHHHHhhCCCceEEEEe--CCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCH
Confidence            32222222222221111000011111111  11000         011334456665544332 2234678899999998


Q ss_pred             CCCCcchHHHHHHHHHHHHHcC-CCcEEEEEEecC
Q psy2071         185 HERTLATDILMGVLKEVIKQRA-DLKLVIMSATLD  218 (302)
Q Consensus       185 ~~p~~~lD~~~~~l~~ll~~~~-~~~~~ii~~thd  218 (302)
                      |.-....+ ....+..++.... ...++++++|..
T Consensus       168 h~~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~  201 (220)
T 1t6n_A          168 DKMLEQLD-MRRDVQEIFRMTPHEKQVMMFSATLS  201 (220)
T ss_dssp             HHHHSSHH-HHHHHHHHHHTSCSSSEEEEEESCCC
T ss_pred             HHHhcccC-cHHHHHHHHHhCCCcCeEEEEEeecC
Confidence            74322111 1244555555443 345778888864

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.71  E-value=1.7e-05  Score=70.87  Aligned_cols=28  Identities=29%  Similarity=0.316  Sum_probs=24.1

Q ss_pred             CCEEEEEccCCCCccchhhhhhhccccc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKS  104 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~  104 (302)
                      +..+.|.||+|+||||+++.++......
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~   64 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR   64 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            4689999999999999999998876544

>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*

Probab=97.69  E-value=0.00014  Score=61.48  Aligned_cols=151  Identities=13%  Similarity=0.041  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceee
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGY  141 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  141 (302)
                      .+.......+..|.-+.+.+|+|||||..  ++++..+.....| .+.+..  |.+.-+......+........+-.+..
T Consensus        49 ~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~  126 (230)
T 2oxc_A           49 PVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILA--PTREIAVQIHSVITAIGIKMEGLECHV  126 (230)
T ss_dssp             HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEEC--SSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEe--CCHHHHHHHHHHHHHHhcccCCceEEE
Confidence            34455556677888899999999999974  4444443322222 333332  332222222222211110000111111


Q ss_pred             eeeecCCC-------CccccccccCHHHHHHHhcc-ccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcC-CCcEEE
Q psy2071         142 SIRFEDCS-------SPKTVLKYMTDGMLLREGMS-DPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRA-DLKLVI  212 (302)
Q Consensus       142 ~~~~~~~~-------~~~~~~~~lS~G~~qr~~la-~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~-~~~~~i  212 (302)
                      .  .....       .....+-..|.|......-. ...+.+.+++|+||+|.-... ......+..++.... ...+.+
T Consensus       127 ~--~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~-~~~~~~~~~i~~~~~~~~~~l~  203 (230)
T 2oxc_A          127 F--IGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEE-GSFQEQINWIYSSLPASKQMLA  203 (230)
T ss_dssp             E--CTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHST-TSSHHHHHHHHHHSCSSCEEEE
T ss_pred             E--eCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcC-cchHHHHHHHHHhCCCCCeEEE
Confidence            1  11100       01123344566665554322 223567889999997642110 001234445555444 345778


Q ss_pred             EEEecCHH
Q psy2071         213 MSATLDAG  220 (302)
Q Consensus       213 i~~thd~~  220 (302)
                      +++|...+
T Consensus       204 lSAT~~~~  211 (230)
T 2oxc_A          204 VSATYPEF  211 (230)
T ss_dssp             EESCCCHH
T ss_pred             EEeccCHH
Confidence            88887644

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.68  E-value=1e-05  Score=65.94  Aligned_cols=31  Identities=26%  Similarity=0.187  Sum_probs=27.0

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcccccCC
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG  106 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G  106 (302)
                      .+|++++|+|++||||||+.+.+.+.+.+ .|
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g   33 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG   33 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence            36899999999999999999999998765 55

>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}

Probab=97.68  E-value=0.00027  Score=59.91  Aligned_cols=172  Identities=21%  Similarity=0.217  Sum_probs=82.1

Q ss_pred             CCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhccc----ccCC-CEEEeecC
Q psy2071          42 FTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYS----KSVG-AKAVACTQ  114 (302)
Q Consensus        42 ~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~----~~~G-~~~i~~~~  114 (302)
                      |...+......+......--..+.+.......+..|+-+.+.+|+|||||+.  ++++..+..    ...| .+.+.  .
T Consensus        27 f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil--~  104 (236)
T 2pl3_A           27 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII--S  104 (236)
T ss_dssp             GGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE--C
T ss_pred             HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE--e
Confidence            4455555666655544322223444555666777888899999999999984  333332221    1123 33332  2


Q ss_pred             chhhhHHHHHHHhhhhhccccccceeeeeeecCCC-----CccccccccCHHHHHHHhcc--ccCCCCCcEEEEcCCCCC
Q psy2071         115 PRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCS-----SPKTVLKYMTDGMLLREGMS--DPMLENYQVILLDEAHER  187 (302)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~lS~G~~qr~~la--~al~~~p~lliLDE~~~p  187 (302)
                      |.+.-+......+.... ....-.++.........     .....+-..|.|...+....  ...+.+.+++|+||+|.-
T Consensus       105 Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~  183 (236)
T 2pl3_A          105 PTRELAYQTFEVLRKVG-KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRI  183 (236)
T ss_dssp             SSHHHHHHHHHHHHHHT-TTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHH
T ss_pred             CCHHHHHHHHHHHHHHh-CCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHH
Confidence            33322222222222111 11111111111000000     01123445677766554322  234578899999997731


Q ss_pred             CcchHHH-HHHHHHHHHHcC-CCcEEEEEEecCH
Q psy2071         188 TLATDIL-MGVLKEVIKQRA-DLKLVIMSATLDA  219 (302)
Q Consensus       188 ~~~lD~~-~~~l~~ll~~~~-~~~~~ii~~thd~  219 (302)
                         +|.. ...+..++.... ...+.++++|...
T Consensus       184 ---~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~  214 (236)
T 2pl3_A          184 ---LDMGFADTMNAVIENLPKKRQTLLFSATQTK  214 (236)
T ss_dssp             ---HHTTTHHHHHHHHHTSCTTSEEEEEESSCCH
T ss_pred             ---hcCCcHHHHHHHHHhCCCCCeEEEEEeeCCH
Confidence               1211 134445555443 3357888888754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.68  E-value=4.8e-06  Score=70.38  Aligned_cols=25  Identities=24%  Similarity=0.322  Sum_probs=22.9

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +.+++|+|++||||||+.+.+++.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998866

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.67  E-value=8.2e-06  Score=67.53  Aligned_cols=23  Identities=26%  Similarity=0.601  Sum_probs=21.1

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|+||||||||++.++|..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47999999999999999999974

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.66  E-value=0.00016  Score=56.76  Aligned_cols=35  Identities=20%  Similarity=0.213  Sum_probs=27.2

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+.+......+.-+.|.||+|+|||++.+.+....
T Consensus        14 ~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           14 RRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             HHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             HHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            34444445677789999999999999999887643

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.66  E-value=1.5e-05  Score=72.62  Aligned_cols=30  Identities=20%  Similarity=0.235  Sum_probs=26.5

Q ss_pred             HHHHHHHhCCEEEEEccCCCCccchhhhhhh
Q psy2071          69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g   99 (302)
                      ++++.+.+| +++|+|||||||||++.+|.+
T Consensus        19 ~~~~~~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           19 PGTLNFPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence            445667788 999999999999999999987

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.63  E-value=1.8e-05  Score=78.02  Aligned_cols=37  Identities=30%  Similarity=0.251  Sum_probs=29.6

Q ss_pred             HHHHhCCEEEEEccCCCCccchhhhhhhcccc--cCCCE
Q psy2071          72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK--SVGAK  108 (302)
Q Consensus        72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~--~~G~~  108 (302)
                      +.++++..++|+|++|+|||||++.+++...+  ..|.+
T Consensus         4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V   42 (665)
T 2dy1_A            4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV   42 (665)
T ss_dssp             --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred             CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence            34678899999999999999999999987654  45655

>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A

Probab=97.62  E-value=0.00021  Score=64.92  Aligned_cols=150  Identities=17%  Similarity=0.171  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchh--hhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceee
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQI--PQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGY  141 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll--~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  141 (302)
                      .+.......+..|.-+.+.+|+|+|||...  .++..+.....+ .+.+..  |.+.-+......+...........+..
T Consensus        33 ~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~--P~~~L~~q~~~~~~~~~~~~~~~~~~~  110 (391)
T 1xti_A           33 EVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC--HTRELAFQISKEYERFSKYMPNVKVAV  110 (391)
T ss_dssp             HHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEEC--SCHHHHHHHHHHHHHHTTTCTTCCEEE
T ss_pred             HHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEEC--CCHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence            344555566777888999999999999853  333222221122 444432  332222222222211111000111111


Q ss_pred             eeeecCCCC---------ccccccccCHHHHHHHhccc-cCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcC-CCcE
Q psy2071         142 SIRFEDCSS---------PKTVLKYMTDGMLLREGMSD-PMLENYQVILLDEAHERTLATDILMGVLKEVIKQRA-DLKL  210 (302)
Q Consensus       142 ~~~~~~~~~---------~~~~~~~lS~G~~qr~~la~-al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~-~~~~  210 (302)
                      .  ......         ....+-..|.+......... ..+.+.+++|+||+|.-....+. ...+..++.... ...+
T Consensus       111 ~--~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~-~~~~~~~~~~~~~~~~~  187 (391)
T 1xti_A          111 F--FGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDM-RRDVQEIFRMTPHEKQV  187 (391)
T ss_dssp             E--CTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHH-HHHHHHHHHTSCSSSEE
T ss_pred             E--eCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccch-HHHHHHHHhhCCCCceE
Confidence            1  111100         01134456767665543332 24678999999998854332222 234445554433 3457


Q ss_pred             EEEEEecCH
Q psy2071         211 VIMSATLDA  219 (302)
Q Consensus       211 ~ii~~thd~  219 (302)
                      +++++|...
T Consensus       188 i~~SAT~~~  196 (391)
T 1xti_A          188 MMFSATLSK  196 (391)
T ss_dssp             EEEESSCCS
T ss_pred             EEEEeeCCH
Confidence            888888643

>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19

Probab=97.61  E-value=0.00053  Score=61.43  Aligned_cols=157  Identities=19%  Similarity=0.248  Sum_probs=73.4

Q ss_pred             HHHHHHhCCEEEEEccCCCCccchhhhhhh-cccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecC
Q psy2071          70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCV-EYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFED  147 (302)
Q Consensus        70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g-~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  147 (302)
                      +...+..+..+.+.+|+|||||+..-..+. ......| .+.+.  .|.+.-+......+.......   .+........
T Consensus        37 i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil--~P~~~L~~q~~~~~~~~~~~~---~~~v~~~~~~  111 (367)
T 1hv8_A           37 IPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIIL--TPTRELAIQVADEIESLKGNK---NLKIAKIYGG  111 (367)
T ss_dssp             HHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEE--CSCHHHHHHHHHHHHHHHCSS---CCCEEEECTT
T ss_pred             HHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEE--cCCHHHHHHHHHHHHHHhCCC---CceEEEEECC
Confidence            333344447889999999999986433222 1222223 33332  233322222223222221110   1111111111


Q ss_pred             CC-------CccccccccCHHHHHHHhccc-cCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHc-CCCcEEEEEEecC
Q psy2071         148 CS-------SPKTVLKYMTDGMLLREGMSD-PMLENYQVILLDEAHERTLATDILMGVLKEVIKQR-ADLKLVIMSATLD  218 (302)
Q Consensus       148 ~~-------~~~~~~~~lS~G~~qr~~la~-al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~-~~~~~~ii~~thd  218 (302)
                      ..       .....+-..|.+...+..... ..+.+.+++|+||+|.-... . ....+..++... ....++++++|..
T Consensus       112 ~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~-~-~~~~~~~~~~~~~~~~~~i~~SAT~~  189 (367)
T 1hv8_A          112 KAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNM-G-FIKDVEKILNACNKDKRILLFSATMP  189 (367)
T ss_dssp             SCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTT-T-THHHHHHHHHTSCSSCEEEEECSSCC
T ss_pred             cchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhh-c-hHHHHHHHHHhCCCCceEEEEeeccC
Confidence            10       012234456777665544332 33678899999998752110 1 123344454443 3446788888886


Q ss_pred             HHH---HHhhccCCCeee
Q psy2071         219 AGK---FQQYFDNAPLMN  233 (302)
Q Consensus       219 ~~~---~~~~~d~~~~l~  233 (302)
                      .+.   +..+.....++.
T Consensus       190 ~~~~~~~~~~~~~~~~~~  207 (367)
T 1hv8_A          190 REILNLAKKYMGDYSFIK  207 (367)
T ss_dssp             HHHHHHHHHHCCSEEEEE
T ss_pred             HHHHHHHHHHcCCCeEEE
Confidence            543   344444433333

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.60  E-value=1.1e-05  Score=67.62  Aligned_cols=40  Identities=20%  Similarity=0.121  Sum_probs=34.2

Q ss_pred             HHHHhCCEEEEEccCCCCccchhhhhhhcccccCC--CEEEe
Q psy2071          72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVA  111 (302)
Q Consensus        72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~  111 (302)
                      ..+.+|.+++|+|++||||||+.+.|...+.|..|  .+.+.
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~   61 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD   61 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence            56789999999999999999999999998887777  44454

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.59  E-value=1.2e-05  Score=67.07  Aligned_cols=31  Identities=26%  Similarity=0.162  Sum_probs=27.3

Q ss_pred             HHHHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          71 MTLLAQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        71 ~~~i~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ...+.+|.+++|+|++||||||+.+.|++.+
T Consensus        15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3456789999999999999999999998865

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.59  E-value=7e-05  Score=61.61  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=19.9

Q ss_pred             hCCEEEEEccCCCCccchhhhhhh
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g   99 (302)
                      +|.++.+.|+.||||||++-.++.
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~   25 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVE   25 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999754443

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.59  E-value=5.4e-06  Score=75.55  Aligned_cols=29  Identities=24%  Similarity=0.361  Sum_probs=24.4

Q ss_pred             EEEEEccCCCCccchhhhhhh--cccccCCC
Q psy2071          79 CIVLVGETGSGKTTQIPQWCV--EYSKSVGA  107 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g--~~~~~~G~  107 (302)
                      .++|+|++|||||||++.++|  .++...|.
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~   66 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI   66 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHTSCCSCCCSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCcCCCCCCc
Confidence            799999999999999999999  44555553

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.57  E-value=4.6e-05  Score=67.93  Aligned_cols=26  Identities=27%  Similarity=0.415  Sum_probs=23.0

Q ss_pred             CCEEEEEccCCCCccchhhhhhhccc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +..+.|.||+|+|||+|+.+|+....
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            68899999999999999999887654

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=97.57  E-value=0.00097  Score=54.94  Aligned_cols=145  Identities=19%  Similarity=0.160  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccc---cCC-CEEEeecCchhhhHHHHHHHhhhhhccccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSK---SVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQE  138 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~---~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (302)
                      .+.......+.+|.-+.+.+|+|+|||+.  +.++..+...   ..| .+.+.  .|.+.-+......+......     
T Consensus        26 ~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil--~P~~~L~~q~~~~~~~~~~~-----   98 (207)
T 2gxq_A           26 PIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVL--TPTRELALQVASELTAVAPH-----   98 (207)
T ss_dssp             HHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEE--CSSHHHHHHHHHHHHHHCTT-----
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEE--ECCHHHHHHHHHHHHHHhhc-----
Confidence            34455556677788899999999999984  3333333211   122 33332  23332222222222221110     


Q ss_pred             eeeeeeecCCCC--------ccccccccCHHHHHHHhcc-ccCCCCCcEEEEcCCCCCCcchHH-HHHHHHHHHHHcC-C
Q psy2071         139 VGYSIRFEDCSS--------PKTVLKYMTDGMLLREGMS-DPMLENYQVILLDEAHERTLATDI-LMGVLKEVIKQRA-D  207 (302)
Q Consensus       139 v~~~~~~~~~~~--------~~~~~~~lS~G~~qr~~la-~al~~~p~lliLDE~~~p~~~lD~-~~~~l~~ll~~~~-~  207 (302)
                      +...........        ....+-..|.|......-. ...+.+.+++|+||+|.-   .|. ....+..++.... .
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~---~~~~~~~~~~~i~~~~~~~  175 (207)
T 2gxq_A           99 LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEM---LSMGFEEEVEALLSATPPS  175 (207)
T ss_dssp             SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHH---HHTTCHHHHHHHHHTSCTT
T ss_pred             ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHh---hccchHHHHHHHHHhCCcc
Confidence            111111111110        1122334555655443222 233678899999998741   121 1134445554443 3


Q ss_pred             CcEEEEEEecCH
Q psy2071         208 LKLVIMSATLDA  219 (302)
Q Consensus       208 ~~~~ii~~thd~  219 (302)
                      ..++++++|...
T Consensus       176 ~~~i~~SAT~~~  187 (207)
T 2gxq_A          176 RQTLLFSATLPS  187 (207)
T ss_dssp             SEEEEECSSCCH
T ss_pred             CeEEEEEEecCH
Confidence            457888888764

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.56  E-value=0.00022  Score=55.83  Aligned_cols=34  Identities=21%  Similarity=0.194  Sum_probs=26.2

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .+.+......+.-+.|.||+|+|||++.+.+...
T Consensus        17 ~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           17 NREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             HHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             HHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence            3444444566778999999999999999888654

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=97.56  E-value=0.00034  Score=57.97  Aligned_cols=32  Identities=25%  Similarity=0.234  Sum_probs=23.1

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhh
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC   98 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~   98 (302)
                      .......+..|..+.|.+|+|+|||+..-.++
T Consensus        38 Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~   69 (216)
T 3b6e_A           38 QMEVAQPALEGKNIIICLPTGSGKTRVAVYIA   69 (216)
T ss_dssp             HHHHHHHHHTTCCEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHH
Confidence            33444455567889999999999998764443

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.55  E-value=0.00015  Score=62.42  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=21.4

Q ss_pred             CEEEEEccCCCCccchhhhhhhcc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .-+.|.||+||||||+.+.+++..
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~~   69 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGEA   69 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHc
Confidence            348999999999999999998865

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19

Probab=97.54  E-value=0.00054  Score=57.35  Aligned_cols=171  Identities=15%  Similarity=0.147  Sum_probs=79.6

Q ss_pred             CCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeecCchhhhH
Q psy2071          44 GYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACTQPRRVAA  120 (302)
Q Consensus        44 ~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~~~~~~~~  120 (302)
                      ..+..+...+......-...+.+.......+.+|+-+.+.+|+|||||..  ++++..+.....| .+.+..  |.+.-+
T Consensus         8 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~L~   85 (219)
T 1q0u_A            8 RFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITA--PTRELA   85 (219)
T ss_dssp             GSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEEC--SSHHHH
T ss_pred             hCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEc--CcHHHH
Confidence            33444444544433321222344555566677888899999999999984  4444333221222 343332  333222


Q ss_pred             HHHHHHhhhhhccc---cccceeeeeeec----C--CCCccccccccCHHHHHHHhccc-cCCCCCcEEEEcCCCCCCcc
Q psy2071         121 MSVAQRVSEEMDCQ---LGQEVGYSIRFE----D--CSSPKTVLKYMTDGMLLREGMSD-PMLENYQVILLDEAHERTLA  190 (302)
Q Consensus       121 ~~~~~~~~~~~~~~---~~~~v~~~~~~~----~--~~~~~~~~~~lS~G~~qr~~la~-al~~~p~lliLDE~~~p~~~  190 (302)
                      ......+.......   ....+.......    .  .......+-..|.|......-.. ..+.+.+++|+||+|.-   
T Consensus        86 ~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~---  162 (219)
T 1q0u_A           86 TQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM---  162 (219)
T ss_dssp             HHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH---
T ss_pred             HHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH---
Confidence            22222221111100   011111110000    0  00011234446667665543222 23567899999997641   


Q ss_pred             hHH-HHHHHHHHHHHcC-CCcEEEEEEecCH
Q psy2071         191 TDI-LMGVLKEVIKQRA-DLKLVIMSATLDA  219 (302)
Q Consensus       191 lD~-~~~~l~~ll~~~~-~~~~~ii~~thd~  219 (302)
                      .+. ....+..++.... ...+.++++|...
T Consensus       163 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~  193 (219)
T 1q0u_A          163 LDMGFITDVDQIAARMPKDLQMLVFSATIPE  193 (219)
T ss_dssp             HHTTCHHHHHHHHHTSCTTCEEEEEESCCCG
T ss_pred             hhhChHHHHHHHHHhCCcccEEEEEecCCCH
Confidence            111 1134555555443 3457888888754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.51  E-value=0.0001  Score=63.30  Aligned_cols=26  Identities=27%  Similarity=0.308  Sum_probs=21.8

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ....+.|.||+|+||||+.+.++...
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            44568899999999999999987654

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.50  E-value=0.00011  Score=66.92  Aligned_cols=39  Identities=23%  Similarity=0.154  Sum_probs=29.7

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC  112 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~  112 (302)
                      +++|+++.|.|++|||||||..+++.......+.+.+..
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid   98 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID   98 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            679999999999999999998888765543334444433

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.48  E-value=5.2e-05  Score=64.61  Aligned_cols=42  Identities=24%  Similarity=0.149  Sum_probs=30.3

Q ss_pred             HHHHHHHH---hCCEEEEEccCCCCccchhhhhhhcccccCCCEEE
Q psy2071          68 TEFMTLLA---QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV  110 (302)
Q Consensus        68 ~~i~~~i~---~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i  110 (302)
                      .+.++.+.   .|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus        14 ~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~   58 (229)
T 4eaq_A           14 GTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM   58 (229)
T ss_dssp             ------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred             cCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence            33444454   8999999999999999999999998876 445543

>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}

Probab=97.45  E-value=0.00055  Score=70.41  Aligned_cols=172  Identities=16%  Similarity=0.218  Sum_probs=88.4

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeee
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSI  143 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  143 (302)
                      +.+.......+..|+.+.+.+|+|||||+..-..+. .....|...+. ..|.+.-+......+.....     .++...
T Consensus        88 ~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~-~~l~~g~rvL~-l~PtkaLa~Q~~~~l~~~~~-----~vgllt  160 (1010)
T 2xgj_A           88 DPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIA-QSLKNKQRVIY-TSPIKALSNQKYRELLAEFG-----DVGLMT  160 (1010)
T ss_dssp             CHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHH-HHHHTTCEEEE-EESSHHHHHHHHHHHHHHHS-----CEEEEC
T ss_pred             CHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHH-HHhccCCeEEE-ECChHHHHHHHHHHHHHHhC-----CEEEEe
Confidence            445566666788999999999999999986422211 11123433222 23433222223333322222     333321


Q ss_pred             eecCCCCccccccccCHHHHHHHhc-cccCCCCCcEEEEcCCCCCCcc-hHHHHHHHHHHHHHc-CCCcEEEEEEec-CH
Q psy2071         144 RFEDCSSPKTVLKYMTDGMLLREGM-SDPMLENYQVILLDEAHERTLA-TDILMGVLKEVIKQR-ADLKLVIMSATL-DA  219 (302)
Q Consensus       144 ~~~~~~~~~~~~~~lS~G~~qr~~l-a~al~~~p~lliLDE~~~p~~~-lD~~~~~l~~ll~~~-~~~~~~ii~~th-d~  219 (302)
                      . +.....+..+-.+|.+....... ....+.+.+++|+||+|.-... -....   ..++... ....++.+++|- +.
T Consensus       161 G-d~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~---e~il~~l~~~~~il~LSATi~n~  236 (1010)
T 2xgj_A          161 G-DITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVW---EETIILLPDKVRYVFLSATIPNA  236 (1010)
T ss_dssp             S-SCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHH---HHHHHHSCTTCEEEEEECCCTTH
T ss_pred             C-CCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHH---HHHHHhcCCCCeEEEEcCCCCCH
Confidence            1 11111233455677776654332 2345678999999998842111 12222   2223323 345788899997 44


Q ss_pred             HHHHhhcc-----CCCeeeecCcCCccceeec
Q psy2071         220 GKFQQYFD-----NAPLMNVPGRTHPVEIFYT  246 (302)
Q Consensus       220 ~~~~~~~d-----~~~~l~i~g~~~~~~~~~~  246 (302)
                      ..+..+..     .+.++...++..|.+.++.
T Consensus       237 ~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~  268 (1010)
T 2xgj_A          237 MEFAEWICKIHSQPCHIVYTNFRPTPLQHYLF  268 (1010)
T ss_dssp             HHHHHHHHHHHTSCEEEEEECCCSSCEEEEEE
T ss_pred             HHHHHHHHhhcCCCeEEEecCCCcccceEEEE
Confidence            44444433     3444444666666655543

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.44  E-value=4.1e-05  Score=62.68  Aligned_cols=37  Identities=27%  Similarity=0.193  Sum_probs=31.1

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEe
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA  111 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~  111 (302)
                      .+|.+++|+|++||||||+.+.++..+.+..+.+.+.
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~   47 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL   47 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence            4688999999999999999999999887666666443

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.42  E-value=9e-05  Score=64.45  Aligned_cols=24  Identities=29%  Similarity=0.311  Sum_probs=20.6

Q ss_pred             CCEEEEEccCCCCccchhhhhhhc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      ...+.|.||+|+||||+.+.++..
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            346889999999999999998764

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.42  E-value=0.0003  Score=63.63  Aligned_cols=38  Identities=18%  Similarity=0.182  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHhCC---EEEEEccCCCCccchhhhhhhcccc
Q psy2071          66 YRTEFMTLLAQNQ---CIVLVGETGSGKTTQIPQWCVEYSK  103 (302)
Q Consensus        66 ~~~~i~~~i~~g~---i~~liG~nGsGKSTll~~i~g~~~~  103 (302)
                      ..+.+...+..|.   .+.|.||.|+||||+++.++..+..
T Consensus        24 ~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             HHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3455566677776   4899999999999999999876543

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.42  E-value=0.00039  Score=65.04  Aligned_cols=50  Identities=12%  Similarity=0.133  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeec
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACT  113 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~  113 (302)
                      +..++.+.--+.+|+++.|.|++|+||||+.-.++.......| .+.+...
T Consensus       187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl  237 (444)
T 2q6t_A          187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL  237 (444)
T ss_dssp             CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            3446666655889999999999999999999888876554334 4544433

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.40  E-value=3.8e-05  Score=60.95  Aligned_cols=24  Identities=25%  Similarity=0.457  Sum_probs=21.0

Q ss_pred             CEEEEEccCCCCccchhhhhhhcc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+.+|+|||||||||++.+|...+
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            489999999999999999987543

>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}

Probab=97.38  E-value=0.00033  Score=60.69  Aligned_cols=147  Identities=24%  Similarity=0.276  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhccc----ccCC-CEEEeecCchhhhHHHHHHHhhhhhcccccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYS----KSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQ  137 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~----~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (302)
                      .+.......+..|+-+.+.+|+|||||..  ++++..+..    +..| .+.+.  .|.+.-+..+...+..... ....
T Consensus        79 ~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil--~Pt~~La~q~~~~~~~~~~-~~~~  155 (262)
T 3ly5_A           79 EIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLIL--SPTRELAMQTFGVLKELMT-HHVH  155 (262)
T ss_dssp             HHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE--CSSHHHHHHHHHHHHHHTT-TCCS
T ss_pred             HHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEE--eCCHHHHHHHHHHHHHHHh-hcCc
Confidence            34555556667788899999999999974  444332221    1123 33332  2333222222222222111 1111


Q ss_pred             ceeeeeeecCCCC--------ccccccccCHHHHHHHhccc--cCCCCCcEEEEcCCCCCCcchHH-HHHHHHHHHHHcC
Q psy2071         138 EVGYSIRFEDCSS--------PKTVLKYMTDGMLLREGMSD--PMLENYQVILLDEAHERTLATDI-LMGVLKEVIKQRA  206 (302)
Q Consensus       138 ~v~~~~~~~~~~~--------~~~~~~~lS~G~~qr~~la~--al~~~p~lliLDE~~~p~~~lD~-~~~~l~~ll~~~~  206 (302)
                      .++...  .....        ....+-..+.|.........  ..+.+.+++|+||+|.   -+|. ....+..++....
T Consensus       156 ~~~~~~--g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~---l~~~~~~~~l~~i~~~~~  230 (262)
T 3ly5_A          156 TYGLIM--GGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADR---ILDVGFEEELKQIIKLLP  230 (262)
T ss_dssp             CEEEEC--SSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHH---HHHTTCHHHHHHHHHHSC
T ss_pred             eEEEEE--CCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHH---HhhhhHHHHHHHHHHhCC
Confidence            111111  11100        01224446666665443322  2467889999999763   1221 1134555555543


Q ss_pred             -CCcEEEEEEecCH
Q psy2071         207 -DLKLVIMSATLDA  219 (302)
Q Consensus       207 -~~~~~ii~~thd~  219 (302)
                       ...+.+++||...
T Consensus       231 ~~~q~l~~SAT~~~  244 (262)
T 3ly5_A          231 TRRQTMLFSATQTR  244 (262)
T ss_dssp             SSSEEEEECSSCCH
T ss_pred             CCCeEEEEEecCCH
Confidence             3457778888764

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.36  E-value=0.00024  Score=58.77  Aligned_cols=26  Identities=23%  Similarity=0.252  Sum_probs=20.9

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .+|.++.+.|+.||||||.+-.++--
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r   31 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRR   31 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence            46889999999999999987555443

>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*

Probab=97.36  E-value=0.0014  Score=64.38  Aligned_cols=148  Identities=13%  Similarity=0.118  Sum_probs=73.5

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhh--ccc-cc--CCCEEEeecCchhhhHHHHHHHhhhhhccccccceee
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCV--EYS-KS--VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGY  141 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g--~~~-~~--~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  141 (302)
                      ...+...+-.|.-+.+.+|+|||||+..-+.+.  +.. +.  .|.+.+..  |.+.-+......+..... ..+-.++.
T Consensus        18 Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~--Pt~~L~~Q~~~~~~~~~~-~~~~~v~~   94 (696)
T 2ykg_A           18 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFA--NQIPVYEQNKSVFSKYFE-RHGYRVTG   94 (696)
T ss_dssp             HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEEC--SSHHHHHHHHHHHHHHTT-TTTCCEEE
T ss_pred             HHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEE--CCHHHHHHHHHHHHHHhc-cCCceEEE
Confidence            444455566788899999999999996433322  111 11  14443332  222111111111111110 00111211


Q ss_pred             eeeecCCC------CccccccccCHHHHHHHhccccC--CCCCcEEEEcCCCCCCcchHHHHHHHHHHHHH------cCC
Q psy2071         142 SIRFEDCS------SPKTVLKYMTDGMLLREGMSDPM--LENYQVILLDEAHERTLATDILMGVLKEVIKQ------RAD  207 (302)
Q Consensus       142 ~~~~~~~~------~~~~~~~~lS~G~~qr~~la~al--~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~------~~~  207 (302)
                      ........      .....+-..|.|...+......+  +.+.++||+||+|.-...- ....++..++..      ...
T Consensus        95 ~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~-~~~~i~~~~l~~~~~~~~~~~  173 (696)
T 2ykg_A           95 ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH-PYNMIMFNYLDQKLGGSSGPL  173 (696)
T ss_dssp             ECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC-HHHHHHHHHHHHHHTTCCSCC
T ss_pred             EeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc-cHHHHHHHHHHHhhcccCCCC
Confidence            11100000      01234556888888776554433  6788999999999755332 222333333332      133


Q ss_pred             CcEEEEEEecC
Q psy2071         208 LKLVIMSATLD  218 (302)
Q Consensus       208 ~~~~ii~~thd  218 (302)
                      ..++.+++|..
T Consensus       174 ~~il~LTATp~  184 (696)
T 2ykg_A          174 PQVIGLTASVG  184 (696)
T ss_dssp             CEEEEEESCCC
T ss_pred             CeEEEEeCccc
Confidence            46888999986

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.35  E-value=0.00025  Score=66.10  Aligned_cols=43  Identities=35%  Similarity=0.332  Sum_probs=34.2

Q ss_pred             CEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA  120 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~  120 (302)
                      .+++++|++|+||||+...|++.+......+.+...++.+.+.
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a  142 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAA  142 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchH
Confidence            4899999999999999999998876554577777777665444

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.34  E-value=4.6e-05  Score=63.48  Aligned_cols=29  Identities=31%  Similarity=0.438  Sum_probs=25.2

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ...+|.+++|+||+||||||+.+.|+..+
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            45688999999999999999999998765

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.30  E-value=5.9e-05  Score=62.57  Aligned_cols=21  Identities=33%  Similarity=0.412  Sum_probs=20.0

Q ss_pred             EEEEEccCCCCccchhhhhhh
Q psy2071          79 CIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g   99 (302)
                      +++|+|+|||||||+.+.|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999988

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=97.30  E-value=0.0036  Score=53.27  Aligned_cols=127  Identities=17%  Similarity=0.133  Sum_probs=59.7

Q ss_pred             HHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccc-eeeeeeecCCC
Q psy2071          71 MTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQE-VGYSIRFEDCS  149 (302)
Q Consensus        71 ~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~  149 (302)
                      ...+..+.-+.|.||+|+|||.+.-.++...   .+.+.+..  |.+.-.......+.. ++    .. ++..   ....
T Consensus       102 i~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~--P~~~L~~q~~~~~~~-~~----~~~v~~~---~g~~  168 (237)
T 2fz4_A          102 LERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVV--PTLALAEQWKERLGI-FG----EEYVGEF---SGRI  168 (237)
T ss_dssp             HHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEE--SSHHHHHHHHHHHGG-GC----GGGEEEE---SSSC
T ss_pred             HHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEe--CCHHHHHHHHHHHHh-CC----CCeEEEE---eCCC
Confidence            3345556668999999999999864443322   33444433  221111111112111 11    11 2211   1111


Q ss_pred             CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecC
Q psy2071         150 SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLD  218 (302)
Q Consensus       150 ~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd  218 (302)
                      .....+...+.+...+..  ..+..+.++||+||+|.-...   .   ...++.......+..+++|..
T Consensus       169 ~~~~~i~v~T~~~l~~~~--~~~~~~~~llIiDEaH~l~~~---~---~~~i~~~~~~~~~l~LSATp~  229 (237)
T 2fz4_A          169 KELKPLTVSTYDSAYVNA--EKLGNRFMLLIFDEVHHLPAE---S---YVQIAQMSIAPFRLGLTATFE  229 (237)
T ss_dssp             BCCCSEEEEEHHHHHHTH--HHHTTTCSEEEEECSSCCCTT---T---HHHHHHTCCCSEEEEEEESCC
T ss_pred             CCcCCEEEEeHHHHHhhH--HHhcccCCEEEEECCccCCCh---H---HHHHHHhccCCEEEEEecCCC
Confidence            112222333333333211  223457999999998864332   1   223333334445677788864

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.28  E-value=0.0012  Score=60.21  Aligned_cols=42  Identities=19%  Similarity=0.170  Sum_probs=30.6

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ  114 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~  114 (302)
                      -+..|+++.|.|++|+|||||.-+++.......+.+.+....
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E  111 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE  111 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence            366999999999999999999877765443333455554443

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.27  E-value=0.00042  Score=62.92  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=22.3

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ....+.|.||+|+||||+.+.++...
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc
Confidence            35679999999999999999997654

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.25  E-value=0.00025  Score=66.49  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=28.5

Q ss_pred             HHHHHHHHhCCE--EEEEccCCCCccchhhhhhhcc
Q psy2071          68 TEFMTLLAQNQC--IVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        68 ~~i~~~i~~g~i--~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..+...+..|.+  +.|.||+|+||||+.+.|+...
T Consensus        39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~   74 (447)
T 3pvs_A           39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA   74 (447)
T ss_dssp             SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence            455667788876  8999999999999999998765

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=97.23  E-value=0.0026  Score=57.88  Aligned_cols=171  Identities=15%  Similarity=0.131  Sum_probs=81.4

Q ss_pred             CCCCCCChhhHHHHHhhcCCC-hhHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeecCchh
Q psy2071          42 FTGYPYTPRYHELHRKRITLP-VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACTQPRR  117 (302)
Q Consensus        42 ~~~~~~~~~~~~l~~~r~~lp-~~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~~~~~  117 (302)
                      |......+...+-.... .+. -+.+.......+..|.-+.+.+|+|||||+.  ++++..+.....| .+.+..  |.+
T Consensus        23 f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~--P~~   99 (400)
T 1s2m_A           23 FEDFYLKRELLMGIFEA-GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMV--PTR   99 (400)
T ss_dssp             GGGGCCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEEC--SSH
T ss_pred             hhhcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEc--CCH
Confidence            44444455554433322 121 2334455556666788899999999999974  3333322221123 344432  333


Q ss_pred             hhHHHHHHHhhhhhccccccceeeeeeecCCC--------CccccccccCHHHHHHHhcc-ccCCCCCcEEEEcCCCCCC
Q psy2071         118 VAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCS--------SPKTVLKYMTDGMLLREGMS-DPMLENYQVILLDEAHERT  188 (302)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~lS~G~~qr~~la-~al~~~p~lliLDE~~~p~  188 (302)
                      .-+......+.... ...+..+....  ....        .....+-..|.|........ ...+.+.+++|+||+|.-.
T Consensus       100 ~L~~q~~~~~~~~~-~~~~~~~~~~~--g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~  176 (400)
T 1s2m_A          100 ELALQTSQVVRTLG-KHCGISCMVTT--GGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKML  176 (400)
T ss_dssp             HHHHHHHHHHHHHT-TTTTCCEEEEC--SSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHS
T ss_pred             HHHHHHHHHHHHHh-cccCceEEEEe--CCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhh
Confidence            22222222222111 11111111111  1100        11223445677766554332 2346788999999987421


Q ss_pred             cchHHHHHHHHHHHHHcC-CCcEEEEEEecCHH
Q psy2071         189 LATDILMGVLKEVIKQRA-DLKLVIMSATLDAG  220 (302)
Q Consensus       189 ~~lD~~~~~l~~ll~~~~-~~~~~ii~~thd~~  220 (302)
                      . . .....+..++.... ....+++++|....
T Consensus       177 ~-~-~~~~~~~~i~~~~~~~~~~i~lSAT~~~~  207 (400)
T 1s2m_A          177 S-R-DFKTIIEQILSFLPPTHQSLLFSATFPLT  207 (400)
T ss_dssp             S-H-HHHHHHHHHHTTSCSSCEEEEEESCCCHH
T ss_pred             h-h-chHHHHHHHHHhCCcCceEEEEEecCCHH
Confidence            1 1 11244455544433 34678889997654

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.23  E-value=9.3e-05  Score=66.96  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHhCCE--EEEEccCCCCccchhhhhhhccc
Q psy2071          66 YRTEFMTLLAQNQC--IVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        66 ~~~~i~~~i~~g~i--~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +++.+...+++|++  ++|+|++||||||+.++|++.+.
T Consensus        11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            56777888899998  99999999999999999987653

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.22  E-value=8.5e-05  Score=66.35  Aligned_cols=27  Identities=19%  Similarity=0.222  Sum_probs=23.4

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhh
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g   99 (302)
                      -+.+|.++.|.||.|||||||..+++.
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            366788899999999999999988764

>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A

Probab=97.21  E-value=0.00023  Score=70.06  Aligned_cols=46  Identities=26%  Similarity=0.295  Sum_probs=27.9

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV  127 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~  127 (302)
                      +|+.+.+.||+|||||+.  ++..+.....| +.+   .|.+.-+..+..++
T Consensus       154 ~rk~vlv~apTGSGKT~~--al~~l~~~~~g-l~l---~PtR~LA~Qi~~~l  199 (677)
T 3rc3_A          154 QRKIIFHSGPTNSGKTYH--AIQKYFSAKSG-VYC---GPLKLLAHEIFEKS  199 (677)
T ss_dssp             CCEEEEEECCTTSSHHHH--HHHHHHHSSSE-EEE---ESSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHH--HHHHHHhcCCe-EEE---eCHHHHHHHHHHHH
Confidence            678999999999999994  33333332223 222   45555555555444

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.21  E-value=0.0009  Score=56.16  Aligned_cols=25  Identities=20%  Similarity=0.199  Sum_probs=20.4

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhh
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g   99 (302)
                      .+|.+..+.|+-||||||.+-.++-
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~   50 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVR   50 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHH
Confidence            4688999999999999998655443

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.20  E-value=8.5e-05  Score=59.91  Aligned_cols=26  Identities=15%  Similarity=0.295  Sum_probs=22.8

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +|..++|+|++|+|||||++.+++..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56789999999999999999998854

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.18  E-value=0.00011  Score=60.85  Aligned_cols=33  Identities=24%  Similarity=0.294  Sum_probs=26.1

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeec
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT  113 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~  113 (302)
                      ..+++|+|++||||||+.+.|+..+    |...+.+.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d   50 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGD   50 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCC
Confidence            4589999999999999999998765    44555443

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.16  E-value=0.00017  Score=58.75  Aligned_cols=28  Identities=18%  Similarity=0.229  Sum_probs=24.2

Q ss_pred             CCEEEEEccCCCCccchhhhhhhccccc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKS  104 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~  104 (302)
                      -.+++|+|++|||||||++.+++.+.+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~   33 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCAR   33 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence            3589999999999999999999876543

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A

Probab=97.16  E-value=0.0057  Score=51.90  Aligned_cols=184  Identities=18%  Similarity=0.165  Sum_probs=83.9

Q ss_pred             CCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccc-----cCC-CEEEeec
Q psy2071          42 FTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSK-----SVG-AKAVACT  113 (302)
Q Consensus        42 ~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~-----~~G-~~~i~~~  113 (302)
                      |..........+......--..+.+.......+..|+-+.+.+|+|||||..  ++++..+...     ..| .+.+.. 
T Consensus        31 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~-  109 (242)
T 3fe2_A           31 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLA-  109 (242)
T ss_dssp             TTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEEC-
T ss_pred             HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEe-
Confidence            4444555555444333211112334555556677888999999999999974  4444333211     122 333322 


Q ss_pred             CchhhhHHHHHHHhhhhhccccccceeeeeeecCCCC--------ccccccccCHHHHHHHhc-cccCCCCCcEEEEcCC
Q psy2071         114 QPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSS--------PKTVLKYMTDGMLLREGM-SDPMLENYQVILLDEA  184 (302)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------~~~~~~~lS~G~~qr~~l-a~al~~~p~lliLDE~  184 (302)
                       |.+.-+..+...+.... ...+-.+...  ......        ....+-..+.|......- ....+.+.+++|+||+
T Consensus       110 -Pt~~L~~Q~~~~~~~~~-~~~~~~~~~~--~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEa  185 (242)
T 3fe2_A          110 -PTRELAQQVQQVAAEYC-RACRLKSTCI--YGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEA  185 (242)
T ss_dssp             -SSHHHHHHHHHHHHHHH-HHTTCCEEEE--CTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTH
T ss_pred             -CcHHHHHHHHHHHHHHH-hhcCceEEEE--ECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCH
Confidence             32222222222111110 0001111111  111100        011233456665544332 2234678899999997


Q ss_pred             CCCCcchHH-HHHHHHHHHHHcC-CCcEEEEEEecCHH---HHHhhccCCCeee
Q psy2071         185 HERTLATDI-LMGVLKEVIKQRA-DLKLVIMSATLDAG---KFQQYFDNAPLMN  233 (302)
Q Consensus       185 ~~p~~~lD~-~~~~l~~ll~~~~-~~~~~ii~~thd~~---~~~~~~d~~~~l~  233 (302)
                      |.   -+|. ....+..++.... +..+.++++|..-+   .+..+......+.
T Consensus       186 h~---l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~  236 (242)
T 3fe2_A          186 DR---MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN  236 (242)
T ss_dssp             HH---HHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEE
T ss_pred             HH---HhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEE
Confidence            63   1121 1134455555443 34577788887543   3344444444444

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.13  E-value=0.00088  Score=56.82  Aligned_cols=26  Identities=35%  Similarity=0.578  Sum_probs=23.1

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhh
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g   99 (302)
                      +++|+++.|.|++|+||||+.-+++-
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999999999877653

>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}

Probab=97.11  E-value=0.0033  Score=58.38  Aligned_cols=146  Identities=18%  Similarity=0.242  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccc--hhhhhhhccccc-----CC-CEEEeecCchhhhHHHHHHHhhhhhcccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTT--QIPQWCVEYSKS-----VG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQ  137 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKST--ll~~i~g~~~~~-----~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (302)
                      +.......+..|.-+.+.+|+|||||.  +++++..+....     .| .+.+.  .|.+.-+..+...+..... ...-
T Consensus        82 iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil--~PtreLa~Q~~~~~~~~~~-~~~~  158 (434)
T 2db3_A           82 IQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIV--SPTRELAIQIFNEARKFAF-ESYL  158 (434)
T ss_dssp             HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEE--CSSHHHHHHHHHHHHHHTT-TSSC
T ss_pred             HHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEE--ecCHHHHHHHHHHHHHHhc-cCCc
Confidence            344445566788899999999999998  345544333211     12 33332  2333222222222211110 0001


Q ss_pred             ceeeeeeecCCC--------CccccccccCHHHHHHHhc-cccCCCCCcEEEEcCCCCCCcchHH-HHHHHHHHHHH---
Q psy2071         138 EVGYSIRFEDCS--------SPKTVLKYMTDGMLLREGM-SDPMLENYQVILLDEAHERTLATDI-LMGVLKEVIKQ---  204 (302)
Q Consensus       138 ~v~~~~~~~~~~--------~~~~~~~~lS~G~~qr~~l-a~al~~~p~lliLDE~~~p~~~lD~-~~~~l~~ll~~---  204 (302)
                      .++..  .....        .....+-..|.|......- ....+.+.++||+||+|.-   +|. ....+..++..   
T Consensus       159 ~~~~~--~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~---~~~gf~~~~~~i~~~~~~  233 (434)
T 2db3_A          159 KIGIV--YGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRM---LDMGFSEDMRRIMTHVTM  233 (434)
T ss_dssp             CCCEE--CTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHH---TSTTTHHHHHHHHHCTTS
T ss_pred             EEEEE--ECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhh---hccCcHHHHHHHHHhcCC
Confidence            11111  11110        0112344567776655432 2234678999999997641   111 11334455443   


Q ss_pred             cCCCcEEEEEEecCH
Q psy2071         205 RADLKLVIMSATLDA  219 (302)
Q Consensus       205 ~~~~~~~ii~~thd~  219 (302)
                      .....+.++++|...
T Consensus       234 ~~~~q~l~~SAT~~~  248 (434)
T 2db3_A          234 RPEHQTLMFSATFPE  248 (434)
T ss_dssp             CSSCEEEEEESCCCH
T ss_pred             CCCceEEEEeccCCH
Confidence            234467788888754

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.10  E-value=0.0011  Score=60.00  Aligned_cols=25  Identities=28%  Similarity=0.243  Sum_probs=22.2

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +..+.|.||.|+||||+++.++...
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            5679999999999999999998765

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.09  E-value=0.00013  Score=58.18  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=20.8

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|++|+|||||++.+++..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998854

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.09  E-value=0.0014  Score=60.02  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=21.3

Q ss_pred             CCEEEEEccCCCCccchhhhhhhc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      +..+.|.||+|+||||+.+.++..
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            568999999999999999998764

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.08  E-value=0.00013  Score=60.87  Aligned_cols=24  Identities=25%  Similarity=0.457  Sum_probs=21.1

Q ss_pred             CEEEEEccCCCCccchhhhhhhcc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+.+|+|||||||||++.+|...+
T Consensus        24 ~~~~I~G~NgsGKStil~ai~~~l   47 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAILVGL   47 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHh
Confidence            589999999999999999986544

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.08  E-value=0.00072  Score=59.77  Aligned_cols=35  Identities=20%  Similarity=0.294  Sum_probs=27.0

Q ss_pred             HHHHHHHHHhCC--EEEEEccCCCCccchhhhhhhcc
Q psy2071          67 RTEFMTLLAQNQ--CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        67 ~~~i~~~i~~g~--i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+.+...+..|.  .+.|.||.|+||||+.+.++..+
T Consensus        34 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           34 VKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             HHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            444555666665  68999999999999999887654

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.08  E-value=0.0013  Score=58.34  Aligned_cols=36  Identities=22%  Similarity=0.404  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHhCC---EEEEEccCCCCccchhhhhhhcc
Q psy2071          66 YRTEFMTLLAQNQ---CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        66 ~~~~i~~~i~~g~---i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..+.+...+..|.   .+.+.||+|+||||+.+.++..+
T Consensus        34 ~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           34 DKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             HHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            3455666666665   46667779999999999987654

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.07  E-value=0.00041  Score=61.93  Aligned_cols=34  Identities=29%  Similarity=0.378  Sum_probs=27.1

Q ss_pred             HHHHH-HHHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071          67 RTEFM-TLLAQNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        67 ~~~i~-~~i~~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++.+. --+++|+++.|.|++||||||+..+++..
T Consensus        87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44443 24678999999999999999999888753

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.07  E-value=0.00013  Score=59.28  Aligned_cols=23  Identities=43%  Similarity=0.575  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|++|||||||++.+++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999999864

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.05  E-value=0.00013  Score=59.45  Aligned_cols=26  Identities=31%  Similarity=0.547  Sum_probs=22.3

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      ..|.+++|+|++||||||+.+.|+..
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~   27 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQE   27 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999998753

>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}

Probab=97.05  E-value=0.0024  Score=58.39  Aligned_cols=58  Identities=14%  Similarity=0.137  Sum_probs=34.2

Q ss_pred             CCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccc--hhhhhhh
Q psy2071          42 FTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTT--QIPQWCV   99 (302)
Q Consensus        42 ~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKST--ll~~i~g   99 (302)
                      |......+...+......--.-..+.......+..|+-+.+.+|+|||||.  +++++..
T Consensus        17 f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~   76 (417)
T 2i4i_A           17 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ   76 (417)
T ss_dssp             GGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHH
Confidence            444444555554443321111223345555677788899999999999997  4455433

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.05  E-value=0.00011  Score=60.18  Aligned_cols=31  Identities=23%  Similarity=0.250  Sum_probs=24.6

Q ss_pred             HHHHHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071          70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++....++.+++|+|++||||||+.+.++-.
T Consensus         3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4455667889999999999999999988754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.02  E-value=0.00037  Score=65.08  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=21.8

Q ss_pred             EEEEEccCCCCccchhhhhhhccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      .++|+|+||||||||++.++|...
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~  205 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKER  205 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcc
Confidence            689999999999999999998753

>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A

Probab=97.02  E-value=0.0041  Score=59.50  Aligned_cols=65  Identities=20%  Similarity=0.285  Sum_probs=35.4

Q ss_pred             ccccCHHHHHHHhcc--ccCCCCCcEEEEcCCCC-CCcchHHHHHHHHHHHHHcC-----CCcEEEEEEecCH
Q psy2071         155 LKYMTDGMLLREGMS--DPMLENYQVILLDEAHE-RTLATDILMGVLKEVIKQRA-----DLKLVIMSATLDA  219 (302)
Q Consensus       155 ~~~lS~G~~qr~~la--~al~~~p~lliLDE~~~-p~~~lD~~~~~l~~ll~~~~-----~~~~~ii~~thd~  219 (302)
                      +-..|.|......-.  ...+.+.++||+||+|. ...+.......+...+....     ...++++++|...
T Consensus       204 Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~  276 (563)
T 3i5x_A          204 IVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD  276 (563)
T ss_dssp             EEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred             EEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCH
Confidence            344566655433221  23567889999999874 22222333333333333221     3357888888764

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.01  E-value=0.001  Score=59.45  Aligned_cols=26  Identities=27%  Similarity=0.327  Sum_probs=22.3

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +..-+.|.||.|+||||+.+.++...
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHc
Confidence            44678999999999999999998754

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.00089  Score=61.61  Aligned_cols=26  Identities=27%  Similarity=0.342  Sum_probs=21.9

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +..=+.|.||.|||||++.+++++..
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e~  206 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHHT  206 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence            33458899999999999999998764

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.00  E-value=0.00016  Score=65.95  Aligned_cols=24  Identities=33%  Similarity=0.273  Sum_probs=20.6

Q ss_pred             EEEEEccCCCCccchhhhhhhccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +++|+|+||||||||++.++|...
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~  204 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQ  204 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc
Confidence            389999999999999999998654

>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19

Probab=96.99  E-value=0.0017  Score=59.95  Aligned_cols=156  Identities=16%  Similarity=0.157  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc-cccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY-SKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR  144 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~-~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  144 (302)
                      +.......+..| -+.|.+|+|+|||...-.++... ....+.+.+.+  |.+.-.......+....+.. ...+..   
T Consensus        13 ~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~--P~~~L~~q~~~~~~~~~~~~-~~~v~~---   85 (494)
T 1wp9_A           13 YQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLA--PTKPLVLQHAESFRRLFNLP-PEKIVA---   85 (494)
T ss_dssp             HHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEEC--SSHHHHHHHHHHHHHHBCSC-GGGEEE---
T ss_pred             HHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEE--CCHHHHHHHHHHHHHHhCcc-hhheEE---
Confidence            344444555566 77889999999998765443322 11233444433  32222222222222221110 001111   


Q ss_pred             ecCCCC--------ccccccccCHHHHHHHhccc-cCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEE
Q psy2071         145 FEDCSS--------PKTVLKYMTDGMLLREGMSD-PMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSA  215 (302)
Q Consensus       145 ~~~~~~--------~~~~~~~lS~G~~qr~~la~-al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~  215 (302)
                      +.+...        ....+-..|.+...+..... ....+.++||+||+|.-..... .......+........+..+++
T Consensus        86 ~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~-~~~~~~~~~~~~~~~~~l~lTa  164 (494)
T 1wp9_A           86 LTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYA-YVFIAREYKRQAKNPLVIGLTA  164 (494)
T ss_dssp             ECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCH-HHHHHHHHHHHCSSCCEEEEES
T ss_pred             eeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCc-HHHHHHHHHhcCCCCeEEEEec
Confidence            111110        12234456777766644332 3467899999999986543212 1222333333344557888999


Q ss_pred             ecC--HHHHHhhccCC
Q psy2071         216 TLD--AGKFQQYFDNA  229 (302)
Q Consensus       216 thd--~~~~~~~~d~~  229 (302)
                      |..  .+.+..+++.+
T Consensus       165 Tp~~~~~~~~~l~~~l  180 (494)
T 1wp9_A          165 SPGSTPEKIMEVINNL  180 (494)
T ss_dssp             CSCSSHHHHHHHHHHT
T ss_pred             CCCCCcHHHHHHHHhc
Confidence            975  44555555543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.99  E-value=0.00036  Score=61.55  Aligned_cols=49  Identities=16%  Similarity=0.163  Sum_probs=36.4

Q ss_pred             hHHHHHHHHHHHhC-----------CEEEEEccCCCCccchhhhhhhcccccCCCE-EEee
Q psy2071          64 FEYRTEFMTLLAQN-----------QCIVLVGETGSGKTTQIPQWCVEYSKSVGAK-AVAC  112 (302)
Q Consensus        64 ~~~~~~i~~~i~~g-----------~i~~liG~nGsGKSTll~~i~g~~~~~~G~~-~i~~  112 (302)
                      ..+.+.+...+..+           ..+.|.||+|+||||+.+.++....+..+.. .+++
T Consensus        23 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~   83 (311)
T 4fcw_A           23 DEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM   83 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence            34556666666664           5899999999999999999999877665543 3443

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*

Probab=96.96  E-value=0.0057  Score=51.76  Aligned_cols=171  Identities=13%  Similarity=0.083  Sum_probs=77.0

Q ss_pred             CCCCCCChhhHHHHHhhcCCC-hhHHHHHHHHHHHhCCEEEEEccCCCCccchh--hhhhhcccccCC-CEEEeecCchh
Q psy2071          42 FTGYPYTPRYHELHRKRITLP-VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQI--PQWCVEYSKSVG-AKAVACTQPRR  117 (302)
Q Consensus        42 ~~~~~~~~~~~~l~~~r~~lp-~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll--~~i~g~~~~~~G-~~~i~~~~~~~  117 (302)
                      |..+...+...+..... .+. -+.+.......+..|.-+.+.+|+|||||...  +++..+.....+ .+.+.  .|.+
T Consensus        32 f~~l~l~~~l~~~l~~~-g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil--~Pt~  108 (237)
T 3bor_A           32 FDDMNLKESLLRGIYAY-GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVL--APTR  108 (237)
T ss_dssp             GGGSCCCHHHHHHHHHH-TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEE--CSSH
T ss_pred             hhhcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEE--ECcH
Confidence            44445555555433322 121 23344455556677888999999999999753  222222211122 33332  2333


Q ss_pred             hhHHHHHHHhhhhhccccccceeeeeee-------cCCCCccccccccCHHHHHHHhccc-cCCCCCcEEEEcCCCCCCc
Q psy2071         118 VAAMSVAQRVSEEMDCQLGQEVGYSIRF-------EDCSSPKTVLKYMTDGMLLREGMSD-PMLENYQVILLDEAHERTL  189 (302)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~~~~~~~~~~lS~G~~qr~~la~-al~~~p~lliLDE~~~p~~  189 (302)
                      .-+......+.... ......+......       .........+-..|.|......-.. .-+.+.++||+||+|.-  
T Consensus       109 ~L~~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~--  185 (237)
T 3bor_A          109 ELAQQIQKVILALG-DYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEM--  185 (237)
T ss_dssp             HHHHHHHHHHHHHT-TTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHH--
T ss_pred             HHHHHHHHHHHHHh-hhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHh--
Confidence            22222222221111 1101111111000       0000011233445666655433222 23567899999997631  


Q ss_pred             chHH-HHHHHHHHHHHcC-CCcEEEEEEecCH
Q psy2071         190 ATDI-LMGVLKEVIKQRA-DLKLVIMSATLDA  219 (302)
Q Consensus       190 ~lD~-~~~~l~~ll~~~~-~~~~~ii~~thd~  219 (302)
                       +|. ....+..++.... ...++++++|...
T Consensus       186 -~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~  216 (237)
T 3bor_A          186 -LSRGFKDQIYEIFQKLNTSIQVVLLSATMPT  216 (237)
T ss_dssp             -HHTTCHHHHHHHHHHSCTTCEEEEECSSCCH
T ss_pred             -hccCcHHHHHHHHHhCCCCCeEEEEEEecCH
Confidence             111 1133445555443 3467788888754

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.94  E-value=0.001  Score=62.01  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=22.7

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+..=+.|.||.|||||++.+++++..
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e~  239 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAATI  239 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            344568999999999999999998764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.93  E-value=0.0018  Score=56.99  Aligned_cols=26  Identities=23%  Similarity=0.280  Sum_probs=21.8

Q ss_pred             CCEEEEEccCCCCccchhhhhhhccc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +..+.|.||+|+||||+.+.++..+.
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            34699999999999999998876553

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.93  E-value=0.00024  Score=57.60  Aligned_cols=22  Identities=32%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++|+|++|+|||||++.+++.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999874

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.92  E-value=0.0012  Score=61.41  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=21.5

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..=+.|.||.|||||++.+++++..
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~~  230 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANST  230 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            3448999999999999999998764

>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}

Probab=96.91  E-value=0.0057  Score=57.88  Aligned_cols=62  Identities=13%  Similarity=0.251  Sum_probs=37.6

Q ss_pred             ccccCHHHHHHHhcccc--CCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHc------CCCcEEEEEEec
Q psy2071         155 LKYMTDGMLLREGMSDP--MLENYQVILLDEAHERTLATDILMGVLKEVIKQR------ADLKLVIMSATL  217 (302)
Q Consensus       155 ~~~lS~G~~qr~~la~a--l~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~------~~~~~~ii~~th  217 (302)
                      +-..|.|...+..-...  .+.+.++||+||+|.-.... .....+...+...      ....+..+++|.
T Consensus       105 i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~  174 (555)
T 3tbk_A          105 IIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH-PYNQIMFRYLDHKLGESRDPLPQVVGLTASV  174 (555)
T ss_dssp             EEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC-HHHHHHHHHHHHHTSSCCSCCCEEEEEESCC
T ss_pred             EEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc-hHHHHHHHHHHhhhccccCCCCeEEEEecCc
Confidence            44467777666544333  46778999999998754432 2333444444332      223588888887

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.89  E-value=0.00026  Score=56.59  Aligned_cols=23  Identities=26%  Similarity=0.215  Sum_probs=20.5

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +++|+|++||||||+.+.|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999987654

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.89  E-value=0.0043  Score=55.28  Aligned_cols=24  Identities=33%  Similarity=0.387  Sum_probs=20.7

Q ss_pred             CEEEEEccCCCCccchhhhhhhcc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..+.|.||+|+||||+.+.++...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHh
Confidence            468999999999999999986653

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.00093  Score=61.86  Aligned_cols=26  Identities=23%  Similarity=0.330  Sum_probs=22.2

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ...=+.|.||.|||||++.+++++..
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e~  240 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQT  240 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred             CCCCCceECCCCchHHHHHHHHHHHh
Confidence            34558999999999999999998764

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}

Probab=96.89  E-value=0.014  Score=51.49  Aligned_cols=148  Identities=14%  Similarity=0.133  Sum_probs=70.5

Q ss_pred             HHHHHHHHHhC--CEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceee
Q psy2071          67 RTEFMTLLAQN--QCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGY  141 (302)
Q Consensus        67 ~~~i~~~i~~g--~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  141 (302)
                      .......+-.|  .-+.+.+|+|||||..  ++++..+.....| .+.|.  .|.+.-+..+...+.........-.+.+
T Consensus       119 Q~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil--~PtreLa~Q~~~~~~~l~~~~~~~~~~~  196 (300)
T 3fmo_B          119 QENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL--SPTYELALQTGKVIEQMGKFYPELKLAY  196 (300)
T ss_dssp             HHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE--CSSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred             HHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEE--cCcHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence            44444555555  8899999999999974  4555444332222 33332  2333222222222211111000111222


Q ss_pred             eeeecC---CCCccccccccCHHHHHHHhcc--ccCCCCCcEEEEcCCCCCCcchH-H-HHHHHHHHHHHcC-CCcEEEE
Q psy2071         142 SIRFED---CSSPKTVLKYMTDGMLLREGMS--DPMLENYQVILLDEAHERTLATD-I-LMGVLKEVIKQRA-DLKLVIM  213 (302)
Q Consensus       142 ~~~~~~---~~~~~~~~~~lS~G~~qr~~la--~al~~~p~lliLDE~~~p~~~lD-~-~~~~l~~ll~~~~-~~~~~ii  213 (302)
                      ......   .......+-..+.|........  ..-+.+.++||+||+|.-   +| . ....+..++.... ...++++
T Consensus       197 ~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l---~~~~~~~~~~~~i~~~~~~~~q~i~~  273 (300)
T 3fmo_B          197 AVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM---IATQGHQDQSIRIQRMLPRNCQMLLF  273 (300)
T ss_dssp             ESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHH---HHSTTHHHHHHHHHTTSCTTCEEEEE
T ss_pred             EeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHH---hhccCcHHHHHHHHHhCCCCCEEEEE
Confidence            111111   0011123445677776555433  223578899999997632   22 1 1133444444333 3457778


Q ss_pred             EEecCH
Q psy2071         214 SATLDA  219 (302)
Q Consensus       214 ~~thd~  219 (302)
                      ++|..-
T Consensus       274 SAT~~~  279 (300)
T 3fmo_B          274 SATFED  279 (300)
T ss_dssp             ESCCCH
T ss_pred             eccCCH
Confidence            888754

>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}

Probab=96.89  E-value=0.0072  Score=58.23  Aligned_cols=65  Identities=20%  Similarity=0.279  Sum_probs=35.6

Q ss_pred             ccccCHHHHHHHhcc--ccCCCCCcEEEEcCCCCCC-cchHHHHHHHHHHHHHcC-----CCcEEEEEEecCH
Q psy2071         155 LKYMTDGMLLREGMS--DPMLENYQVILLDEAHERT-LATDILMGVLKEVIKQRA-----DLKLVIMSATLDA  219 (302)
Q Consensus       155 ~~~lS~G~~qr~~la--~al~~~p~lliLDE~~~p~-~~lD~~~~~l~~ll~~~~-----~~~~~ii~~thd~  219 (302)
                      +-..|.|......-.  ...+.+.++||+||+|.-. .+.......+...+....     ...++++++|...
T Consensus       153 IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~  225 (579)
T 3sqw_A          153 IVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD  225 (579)
T ss_dssp             EEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred             EEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh
Confidence            444566665443221  3357788999999987422 222233333333333222     3357888888764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.89  E-value=0.0012  Score=58.93  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=21.6

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..-+.|.||+|+||||+.+.++...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH
Confidence            4568999999999999999997653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.88  E-value=0.00022  Score=63.29  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=22.8

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++.+++|+|++|+|||||++.++|..
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            34589999999999999999999863

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.88  E-value=0.00025  Score=60.33  Aligned_cols=29  Identities=21%  Similarity=0.209  Sum_probs=24.3

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .-.+|.+++|+|++||||||+.+.|++.+
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45678899999999999999999998743

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.87  E-value=0.00017  Score=66.30  Aligned_cols=28  Identities=21%  Similarity=0.164  Sum_probs=24.2

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .+..+..++|+|+||+|||||++.+++.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3457788999999999999999999987

>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*

Probab=96.87  E-value=0.002  Score=59.10  Aligned_cols=33  Identities=27%  Similarity=0.402  Sum_probs=25.5

Q ss_pred             CCChhHHHHHHHHHHHhCCEEEEEccCCCCccc
Q psy2071          60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTT   92 (302)
Q Consensus        60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKST   92 (302)
                      .+..+.+.......+-.|+-+.+.+|+|||||.
T Consensus        19 ~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~   51 (414)
T 3oiy_A           19 GKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTT   51 (414)
T ss_dssp             SSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHH
T ss_pred             CCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHH
Confidence            333345566666677788889999999999998

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.86  E-value=0.00034  Score=60.25  Aligned_cols=39  Identities=26%  Similarity=0.223  Sum_probs=29.3

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ  114 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~  114 (302)
                      ...+.+++|+|++||||||+.+.|+..+.  .+.+.+.+..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~   67 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS   67 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence            34567899999999999999999987653  2445555543

>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*

Probab=96.86  E-value=0.0056  Score=58.09  Aligned_cols=62  Identities=15%  Similarity=0.211  Sum_probs=36.9

Q ss_pred             ccccCHHHHHHHhcccc--CCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHH-----cCCCcEEEEEEec
Q psy2071         155 LKYMTDGMLLREGMSDP--MLENYQVILLDEAHERTLATDILMGVLKEVIKQ-----RADLKLVIMSATL  217 (302)
Q Consensus       155 ~~~lS~G~~qr~~la~a--l~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~-----~~~~~~~ii~~th  217 (302)
                      +-..|.|...+..-...  .+.+.++||+||+|.-...- ....++..++..     .....+..+++|.
T Consensus       108 i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~  176 (556)
T 4a2p_A          108 IIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSASQLPQILGLTASV  176 (556)
T ss_dssp             EEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTS-HHHHHHHHHHHHHHCC---CCEEEEEESCC
T ss_pred             EEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcc-hHHHHHHHHHHhhhcccCCCCeEEEEeCCc
Confidence            44567777666544333  47789999999998654332 222333444432     1234588888887

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.85  E-value=0.0012  Score=61.88  Aligned_cols=49  Identities=10%  Similarity=0.082  Sum_probs=34.6

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC  112 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~  112 (302)
                      +..++.+.--+.+|+++.|.|++|+||||+.-+++.........+.+..
T Consensus       184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS  232 (444)
T 3bgw_A          184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS  232 (444)
T ss_dssp             CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence            3446666655889999999999999999998877665432222444443

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.85  E-value=0.0028  Score=59.23  Aligned_cols=26  Identities=27%  Similarity=0.327  Sum_probs=22.4

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +..-+.|.||+|+||||+.+.++...
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc
Confidence            34678999999999999999998764

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.84  E-value=0.0037  Score=58.62  Aligned_cols=38  Identities=16%  Similarity=0.165  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhCC-EEEEEccCCCCccchhhhhhhcccc
Q psy2071          66 YRTEFMTLLAQNQ-CIVLVGETGSGKTTQIPQWCVEYSK  103 (302)
Q Consensus        66 ~~~~i~~~i~~g~-i~~liG~nGsGKSTll~~i~g~~~~  103 (302)
                      +...+...+..++ .+.|.|+.|+||||++..++..+..
T Consensus        33 av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~   71 (459)
T 3upu_A           33 AFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIS   71 (459)
T ss_dssp             HHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            4455555666666 9999999999999999888766543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.84  E-value=0.00031  Score=59.75  Aligned_cols=28  Identities=36%  Similarity=0.360  Sum_probs=23.4

Q ss_pred             EEEEEccCCCCccchhhhhhhcccccCC
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSKSVG  106 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~~~G  106 (302)
                      .++|+|++|+|||||++.|+|...+..+
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~~~~   58 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVFHSG   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence            5899999999999999999987655444

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.83  E-value=0.0002  Score=65.50  Aligned_cols=36  Identities=14%  Similarity=0.191  Sum_probs=32.2

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      .-|+++.+.+|+.++|+|++|||||||+++|+....
T Consensus       164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            457888999999999999999999999999988664

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.00075  Score=62.80  Aligned_cols=26  Identities=19%  Similarity=0.287  Sum_probs=22.3

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ...=+.|.||.|||||++.+++++..
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e~  239 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQT  239 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHHh
Confidence            34568999999999999999998864

>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23

Probab=96.83  E-value=0.0013  Score=57.38  Aligned_cols=41  Identities=17%  Similarity=0.192  Sum_probs=25.2

Q ss_pred             cCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHc-CCCcEEEEEEec
Q psy2071         171 PMLENYQVILLDEAHERTLATDILMGVLKEVIKQR-ADLKLVIMSATL  217 (302)
Q Consensus       171 al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~-~~~~~~ii~~th  217 (302)
                      ....+.+++|+||+|.-..   .   .+..++... ....+..+++|.
T Consensus       221 ~~~~~~~~vIiDEaH~~~~---~---~~~~il~~~~~~~~~l~lSATp  262 (282)
T 1rif_A          221 EWFSQFGMMMNDECHLATG---K---SISSIISGLNNCMFKFGLSGSL  262 (282)
T ss_dssp             GGGGGEEEEEEETGGGCCH---H---HHHHHTTTCTTCCEEEEECSSC
T ss_pred             HHHhhCCEEEEECCccCCc---c---cHHHHHHHhhcCCeEEEEeCCC
Confidence            3567789999999886542   2   333444443 234566677775

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.82  E-value=0.00034  Score=56.90  Aligned_cols=25  Identities=28%  Similarity=0.345  Sum_probs=22.0

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      |.+++|.|++||||||+.+.|+-.+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999987644

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.81  E-value=0.00034  Score=57.24  Aligned_cols=34  Identities=15%  Similarity=0.139  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      +.+++++..+.. .++++|++|+|||||++.+++-
T Consensus        13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred             HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence            456666666555 5799999999999999999863

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.81  E-value=0.0013  Score=60.18  Aligned_cols=27  Identities=26%  Similarity=0.311  Sum_probs=21.9

Q ss_pred             hCCEEEE--EccCCCCccchhhhhhhccc
Q psy2071          76 QNQCIVL--VGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        76 ~g~i~~l--iG~nGsGKSTll~~i~g~~~  102 (302)
                      .+..+.|  .|+.|+|||||++.++....
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~   77 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVS   77 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence            3457777  89999999999999876553

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=96.80  E-value=0.0048  Score=59.99  Aligned_cols=28  Identities=25%  Similarity=0.398  Sum_probs=23.1

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +-.+.++.|.|+.|+||||++..++..+
T Consensus       161 ~l~~~~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          161 ALTRRISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             HHTBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             HhcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence            3468899999999999999988776544

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.80  E-value=0.0019  Score=57.52  Aligned_cols=26  Identities=15%  Similarity=0.120  Sum_probs=21.5

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      +.+| ++.|.||+|||||||.-+++..
T Consensus        26 l~~G-iteI~G~pGsGKTtL~Lq~~~~   51 (333)
T 3io5_A           26 MQSG-LLILAGPSKSFKSNFGLTMVSS   51 (333)
T ss_dssp             BCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence            6678 8999999999999996665543

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.79  E-value=0.00038  Score=56.14  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=22.1

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +.++.|+|++||||||+.+.++-.+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            5689999999999999999987654

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.79  E-value=0.00048  Score=63.24  Aligned_cols=50  Identities=14%  Similarity=0.155  Sum_probs=37.3

Q ss_pred             CCCcEEEEcCCCCCCcchHH-HHHHHHHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071         174 ENYQVILLDEAHERTLATDI-LMGVLKEVIKQRADLKLVIMSATLDAGKFQ  223 (302)
Q Consensus       174 ~~p~lliLDE~~~p~~~lD~-~~~~l~~ll~~~~~~~~~ii~~thd~~~~~  223 (302)
                      ..|.++++||+|.-...-.+ ....+.++++..++.+..++++||++..+.
T Consensus       261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~  311 (392)
T 4ag6_A          261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL  311 (392)
T ss_dssp             CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred             CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence            46899999998766543223 336677888777777899999999987664

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.78  E-value=0.00044  Score=56.70  Aligned_cols=32  Identities=38%  Similarity=0.580  Sum_probs=26.5

Q ss_pred             HHHHHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +...+..+.+++|+|+.||||||+.+.++-.+
T Consensus         5 ~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A            5 FMEDLRKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHHHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cccccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            34456788999999999999999999887543

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=96.77  E-value=0.0017  Score=53.77  Aligned_cols=65  Identities=17%  Similarity=0.151  Sum_probs=40.6

Q ss_pred             HhccccCC--CCCcEEEEcCCCCCCcchH--HHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         166 EGMSDPML--ENYQVILLDEAHERTLATD--ILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       166 ~~la~al~--~~p~lliLDE~~~p~~~lD--~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      +..++..+  .++++|||||   -+..++  .+. ..+.+++..+.+...+||+.-.-.+.+.+++|.|.-|.
T Consensus       109 l~~a~~~l~~~~yDlvILDE---i~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~  178 (196)
T 1g5t_A          109 WQHGKRMLADPLLDMVVLDE---LTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELR  178 (196)
T ss_dssp             HHHHHHHTTCTTCSEEEEET---HHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECC
T ss_pred             HHHHHHHHhcCCCCEEEEeC---CCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeec
Confidence            33444445  6799999999   332222  111 34566666666655555554455678889999887775

>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*

Probab=96.77  E-value=0.0015  Score=59.15  Aligned_cols=170  Identities=14%  Similarity=0.099  Sum_probs=78.4

Q ss_pred             CCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccC-CCEEEeecCchhh
Q psy2071          42 FTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSV-GAKAVACTQPRRV  118 (302)
Q Consensus        42 ~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~-G~~~i~~~~~~~~  118 (302)
                      |...+..+...+......--.-+.+.......+..|.-+.+.+|+|+|||..  ++++..+..... +.+.+..  |.+.
T Consensus        23 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~--P~~~  100 (394)
T 1fuu_A           23 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA--PTRE  100 (394)
T ss_dssp             SGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEEC--SSHH
T ss_pred             hhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEc--CCHH
Confidence            3444444444443333211112333455555666788889999999999975  333333222222 3444432  3322


Q ss_pred             hHHHHHHHhhhhhccccccceeeeeeecCCC-------CccccccccCHHHHHHHhcc-ccCCCCCcEEEEcCCCCCCcc
Q psy2071         119 AAMSVAQRVSEEMDCQLGQEVGYSIRFEDCS-------SPKTVLKYMTDGMLLREGMS-DPMLENYQVILLDEAHERTLA  190 (302)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~lS~G~~qr~~la-~al~~~p~lliLDE~~~p~~~  190 (302)
                      -+......+..... .....+....  ....       .....+-..|.+...+.... ...+.+.+++|+||+|.-   
T Consensus       101 L~~q~~~~~~~~~~-~~~~~~~~~~--g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~---  174 (394)
T 1fuu_A          101 LALQIQKVVMALAF-HMDIKVHACI--GGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM---  174 (394)
T ss_dssp             HHHHHHHHHHHHTT-TSCCCEEEEC--SSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH---
T ss_pred             HHHHHHHHHHHHhc-cCCeeEEEEe--CCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHh---
Confidence            22222222211110 0011111110  1100       00223445676765554332 234678899999998751   


Q ss_pred             hHH-HHHHHHHHHHHcC-CCcEEEEEEecCH
Q psy2071         191 TDI-LMGVLKEVIKQRA-DLKLVIMSATLDA  219 (302)
Q Consensus       191 lD~-~~~~l~~ll~~~~-~~~~~ii~~thd~  219 (302)
                      .+. ....+..++.... ...++++++|...
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~  205 (394)
T 1fuu_A          175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPN  205 (394)
T ss_dssp             HHTTCHHHHHHHHHHSCTTCEEEEECSSCCH
T ss_pred             hCCCcHHHHHHHHHhCCCCceEEEEEEecCH
Confidence            111 1133444444443 3457888888764

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.77  E-value=0.00034  Score=57.60  Aligned_cols=22  Identities=36%  Similarity=0.605  Sum_probs=19.2

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++|+||+|||||||++.|+-.
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999988654

>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A

Probab=96.76  E-value=0.014  Score=53.20  Aligned_cols=148  Identities=14%  Similarity=0.117  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhh--hhhhccc-ccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIP--QWCVEYS-KSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYS  142 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~--~i~g~~~-~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  142 (302)
                      +.......+..|.-+.+.+|+|||||...-  ++..+.. ...+.+.+..  |.+.-+......+... .......+...
T Consensus        63 ~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~-~~~~~~~~~~~  139 (410)
T 2j0s_A           63 IQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILA--PTRELAVQIQKGLLAL-GDYMNVQCHAC  139 (410)
T ss_dssp             HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEEC--SSHHHHHHHHHHHHHH-TTTTTCCEEEE
T ss_pred             HHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEc--CcHHHHHHHHHHHHHH-hccCCeEEEEE
Confidence            445555567778889999999999997532  2222211 1223444432  3332222222222111 10111111111


Q ss_pred             eeecCCCC--------ccccccccCHHHHHHHhcc-ccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcC-CCcEEE
Q psy2071         143 IRFEDCSS--------PKTVLKYMTDGMLLREGMS-DPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRA-DLKLVI  212 (302)
Q Consensus       143 ~~~~~~~~--------~~~~~~~lS~G~~qr~~la-~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~-~~~~~i  212 (302)
                        ......        ....+-..|.|......-. ...+.+.++||+||+|.-... . ....+..++.... ...+++
T Consensus       140 --~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~-~-~~~~~~~i~~~~~~~~~~i~  215 (410)
T 2j0s_A          140 --IGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-G-FKEQIYDVYRYLPPATQVVL  215 (410)
T ss_dssp             --CTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTST-T-THHHHHHHHTTSCTTCEEEE
T ss_pred             --ECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhh-h-hHHHHHHHHHhCccCceEEE
Confidence              011000        0112334566655443322 233567899999998742111 1 1134444544433 346788


Q ss_pred             EEEecCHH
Q psy2071         213 MSATLDAG  220 (302)
Q Consensus       213 i~~thd~~  220 (302)
                      +++|...+
T Consensus       216 ~SAT~~~~  223 (410)
T 2j0s_A          216 ISATLPHE  223 (410)
T ss_dssp             EESCCCHH
T ss_pred             EEcCCCHH
Confidence            88887654

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.76  E-value=0.0021  Score=56.62  Aligned_cols=36  Identities=19%  Similarity=0.301  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHhCCE--EEEEccCCCCccchhhhhhhcc
Q psy2071          66 YRTEFMTLLAQNQC--IVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        66 ~~~~i~~~i~~g~i--~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..+.+...+..|..  +.|.||.|+||||+.+.++..+
T Consensus        29 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           29 TIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             HHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            34455556666653  8999999999999999887654

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.76  E-value=0.00038  Score=55.54  Aligned_cols=19  Identities=32%  Similarity=0.475  Sum_probs=17.9

Q ss_pred             EEEEEccCCCCccchhhhh
Q psy2071          79 CIVLVGETGSGKTTQIPQW   97 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i   97 (302)
                      +++|.|++||||||+.+.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7899999999999999987

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.76  E-value=0.0056  Score=58.25  Aligned_cols=25  Identities=32%  Similarity=0.331  Sum_probs=22.2

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ...+.|.||.|+||||+.+.++..+
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l  101 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQEL  101 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3689999999999999999998765

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.75  E-value=0.00093  Score=72.45  Aligned_cols=131  Identities=14%  Similarity=0.141  Sum_probs=70.7

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccc
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKT  153 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  153 (302)
                      +++|+++.|.||+|+|||||..+++.......+.+.+....-. ..... +...    +..+.. +    .+....    
T Consensus      1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~-~~~l~-a~~~----G~dl~~-l----~v~~~~---- 1488 (2050)
T 3cmu_A         1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA-LDPIY-ARKL----GVDIDN-L----LCSQPD---- 1488 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC-CCHHH-HHHT----TCCTTT-C----EEECCS----
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc-cCHHH-HHHc----CCCchh-c----eeecCC----
Confidence            6799999999999999999998876544333345544432211 00011 1111    111111 1    111000    


Q ss_pred             cccccCHHHHHHHhccccC--CCCCcEEEEcCC--CCCCc-----------ch-HHH-HHHHHHHHHHcCCCcEEEEEEe
Q psy2071         154 VLKYMTDGMLLREGMSDPM--LENYQVILLDEA--HERTL-----------AT-DIL-MGVLKEVIKQRADLKLVIMSAT  216 (302)
Q Consensus       154 ~~~~lS~G~~qr~~la~al--~~~p~lliLDE~--~~p~~-----------~l-D~~-~~~l~~ll~~~~~~~~~ii~~t  216 (302)
                           + +++ -+.+++.+  -..|++||+||.  ..|..           ++ +.+ .+.+.++.....+.++++|++.
T Consensus      1489 -----~-~E~-~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A         1489 -----T-GEQ-ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp             -----S-HHH-HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             -----h-HHH-HHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence                 1 121 11222222  257999999993  44422           11 222 3677888877777889998877


Q ss_pred             cCHHHHHhhc
Q psy2071         217 LDAGKFQQYF  226 (302)
Q Consensus       217 hd~~~~~~~~  226 (302)
                      .....|..++
T Consensus      1562 q~~~~~g~~f 1571 (2050)
T 3cmu_A         1562 QIRMKIGVMF 1571 (2050)
T ss_dssp             CEEECTTCCS
T ss_pred             cccccchhhc
Confidence            6555555444

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.74  E-value=0.0012  Score=71.62  Aligned_cols=35  Identities=23%  Similarity=0.128  Sum_probs=29.2

Q ss_pred             HHHHHH--HHHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071          66 YRTEFM--TLLAQNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        66 ~~~~i~--~~i~~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .+++++  --+++|+++.|.|++|||||||..+++-.
T Consensus      1068 ~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~e 1104 (2050)
T 3cmu_A         1068 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 1104 (2050)
T ss_dssp             HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            356776  36899999999999999999998887643

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.73  E-value=0.003  Score=61.03  Aligned_cols=41  Identities=22%  Similarity=0.212  Sum_probs=30.2

Q ss_pred             HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEE
Q psy2071          70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV  110 (302)
Q Consensus        70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i  110 (302)
                      ....+..+.++.|.|++|+||||++..++..+......+.+
T Consensus       197 Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~  237 (574)
T 3e1s_A          197 VLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL  237 (574)
T ss_dssp             HHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence            33444568899999999999999999988766543334443

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.73  E-value=0.00016  Score=60.14  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=22.1

Q ss_pred             EEEEEccCCCCccchhhhhhhcccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSK  103 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~  103 (302)
                      +++|.|++||||||+++.|...+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999999877653

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.73  E-value=0.00068  Score=54.88  Aligned_cols=26  Identities=31%  Similarity=0.487  Sum_probs=23.0

Q ss_pred             CEEEEEccCCCCccchhhhhhhcccc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEYSK  103 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~~~  103 (302)
                      .+++|+|++||||||++..++..+..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence            47899999999999999999887664

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.69  E-value=0.0022  Score=59.89  Aligned_cols=28  Identities=25%  Similarity=0.297  Sum_probs=23.5

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +....=+.|.||.|||||++.+++++..
T Consensus       240 i~pprGILLyGPPGTGKTlLAkAiA~e~  267 (467)
T 4b4t_H          240 IDPPKGILLYGPPGTGKTLCARAVANRT  267 (467)
T ss_dssp             CCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence            3455668999999999999999998764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.69  E-value=0.00023  Score=58.68  Aligned_cols=34  Identities=18%  Similarity=0.124  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhh
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g   99 (302)
                      .+.+++++..+... ++|+|++|+|||||++.+++
T Consensus        14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence            34566666666664 78999999999999999875

>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B

Probab=96.68  E-value=0.0019  Score=69.85  Aligned_cols=156  Identities=17%  Similarity=0.126  Sum_probs=73.7

Q ss_pred             HHHHHHhCCEEEEEccCCCCccchhh--hhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecC
Q psy2071          70 FMTLLAQNQCIVLVGETGSGKTTQIP--QWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFED  147 (302)
Q Consensus        70 i~~~i~~g~i~~liG~nGsGKSTll~--~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  147 (302)
                      |...++.++.+.+.+|+|||||+..-  ++-.+.....|.+.+  ..|.+.-+......+...+....+..++.......
T Consensus       935 ~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavy--i~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~ 1012 (1724)
T 4f92_B          935 FNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVY--ITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETS 1012 (1724)
T ss_dssp             HHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEE--ECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHH
T ss_pred             HHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEE--EcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCC
Confidence            34444678889999999999998642  222222222333332  23333222222222222222222222222111000


Q ss_pred             ---CCCccccccccCHHHHHHH---hccccCCCCCcEEEEcCCCCCCcchHHHH-HHH---HHHHHHc-CCCcEEEEEEe
Q psy2071         148 ---CSSPKTVLKYMTDGMLLRE---GMSDPMLENYQVILLDEAHERTLATDILM-GVL---KEVIKQR-ADLKLVIMSAT  216 (302)
Q Consensus       148 ---~~~~~~~~~~lS~G~~qr~---~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l---~~ll~~~-~~~~~~ii~~t  216 (302)
                         .......+-..+.|...-+   ...+..+.+-+++|+||+|.=...-.... ..+   +.+.... ....++.+++|
T Consensus      1013 ~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSAT 1092 (1724)
T 4f92_B         1013 TDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSS 1092 (1724)
T ss_dssp             HHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESC
T ss_pred             cchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCC
Confidence               0001122334565543221   12344567889999999985322222222 222   2222222 24468889999


Q ss_pred             c-CHHHHHhhcc
Q psy2071         217 L-DAGKFQQYFD  227 (302)
Q Consensus       217 h-d~~~~~~~~d  227 (302)
                      - +.+++.++.+
T Consensus      1093 l~N~~dla~WL~ 1104 (1724)
T 4f92_B         1093 LSNAKDVAHWLG 1104 (1724)
T ss_dssp             BTTHHHHHHHHT
T ss_pred             CCCHHHHHHHhC
Confidence            6 7777777654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.67  E-value=0.00046  Score=56.76  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.6

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +++|+|++||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            68999999999999999998754

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.66  E-value=0.00062  Score=57.67  Aligned_cols=39  Identities=18%  Similarity=0.177  Sum_probs=25.5

Q ss_pred             hCCE-EEEEccCCCCccchhhhhhhcccccCC-CEEEeecCc
Q psy2071          76 QNQC-IVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQP  115 (302)
Q Consensus        76 ~g~i-~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~  115 (302)
                      .|.. +.+.|+.|+||||+.-.++..+. ..| .+.+...++
T Consensus         4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~-~~G~~V~v~d~D~   44 (228)
T 2r8r_A            4 RGRLKVFLGAAPGVGKTYAMLQAAHAQL-RQGVRVMAGVVET   44 (228)
T ss_dssp             CCCEEEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCC
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHH-HCCCCEEEEEeCC
Confidence            4564 77899999999999655544433 345 555555544

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.63  E-value=0.00044  Score=56.38  Aligned_cols=26  Identities=23%  Similarity=0.327  Sum_probs=22.3

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+.+++|+|++||||||+.+.++-.+
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            46789999999999999999987543

>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19

Probab=96.63  E-value=0.011  Score=50.27  Aligned_cols=28  Identities=25%  Similarity=0.409  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccch
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQ   93 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTl   93 (302)
                      +.......+..|.-+.+.+|+|||||..
T Consensus        49 ~Q~~~i~~i~~~~~~l~~a~TGsGKT~~   76 (253)
T 1wrb_A           49 IQKNAIPAILEHRDIMACAQTGSGKTAA   76 (253)
T ss_dssp             HHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred             HHHHHHHHHhCCCCEEEECCCCChHHHH
Confidence            3444555677788899999999999973

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=96.62  E-value=0.0019  Score=54.20  Aligned_cols=52  Identities=19%  Similarity=0.247  Sum_probs=34.0

Q ss_pred             CCCcEEEEcCCCCCCcchH-HHHHHHHHHHHHcCCCcEEEEEEecCHH----------HHHhhccCCCeee
Q psy2071         174 ENYQVILLDEAHERTLATD-ILMGVLKEVIKQRADLKLVIMSATLDAG----------KFQQYFDNAPLMN  233 (302)
Q Consensus       174 ~~p~lliLDE~~~p~~~lD-~~~~~l~~ll~~~~~~~~~ii~~thd~~----------~~~~~~d~~~~l~  233 (302)
                      .++++|++||++    -+| .....+.++.    +.|+.||.+-.|.+          .+..+||.+.-|+
T Consensus       100 ~~~dvV~IDEaQ----Ff~~~~v~~l~~la----~~gi~Vi~~GLd~DF~~~~F~~~~~Ll~~Ad~v~kl~  162 (219)
T 3e2i_A          100 TNVDVIGIDEVQ----FFDDEIVSIVEKLS----ADGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQ  162 (219)
T ss_dssp             TTCSEEEECCGG----GSCTHHHHHHHHHH----HTTCEEEEEEESBCTTSCBCTTHHHHHHHCSEEEEEC
T ss_pred             cCCCEEEEechh----cCCHHHHHHHHHHH----HCCCEEEEeecccccccCCCccHHHHHHhcceEEEee
Confidence            588999999953    233 2334455544    24788888887764          3567777776665

>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B

Probab=96.61  E-value=0.011  Score=64.12  Aligned_cols=57  Identities=21%  Similarity=0.347  Sum_probs=34.2

Q ss_pred             cCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHH---H-HcCCCcEEEEEEec-CHHHHHhhcc
Q psy2071         171 PMLENYQVILLDEAHERTLATDILM-GVLKEVI---K-QRADLKLVIMSATL-DAGKFQQYFD  227 (302)
Q Consensus       171 al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll---~-~~~~~~~~ii~~th-d~~~~~~~~d  227 (302)
                      .++.+.+++|+||+|.=...--..+ ..+..++   . ......++.++||- +.++++++.+
T Consensus       203 ~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~  265 (1724)
T 4f92_B          203 TYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLR  265 (1724)
T ss_dssp             HHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTT
T ss_pred             hhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhC
Confidence            3567899999999884321111222 2222222   2 22345788999996 7778877764

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.60  E-value=0.00056  Score=59.00  Aligned_cols=23  Identities=35%  Similarity=0.264  Sum_probs=20.6

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +++|+|||||||||+-+.|+..+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            68999999999999999988754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.60  E-value=0.00037  Score=59.45  Aligned_cols=26  Identities=15%  Similarity=0.266  Sum_probs=21.8

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..-+++|.||+||||||+.+.|+..+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            44589999999999999999998544

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.59  E-value=0.00059  Score=54.91  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=19.7

Q ss_pred             CEEEEEccCCCCccchhhhhhh
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g   99 (302)
                      .+++|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3689999999999999998875

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.59  E-value=0.014  Score=51.56  Aligned_cols=45  Identities=13%  Similarity=0.285  Sum_probs=31.3

Q ss_pred             HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecC
Q psy2071          70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQ  114 (302)
Q Consensus        70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~  114 (302)
                      +......+..+.|.||+|+|||++.+.+........+ .+.++|..
T Consensus        18 ~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~   63 (304)
T 1ojl_A           18 IAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAA   63 (304)
T ss_dssp             HHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred             HHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence            3333456778999999999999999998775432222 45666654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.58  E-value=0.00065  Score=55.13  Aligned_cols=26  Identities=31%  Similarity=0.272  Sum_probs=21.7

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+.+++|+|++||||||+.+.++-.+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999887543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.57  E-value=0.00069  Score=55.37  Aligned_cols=28  Identities=39%  Similarity=0.580  Sum_probs=24.0

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..++.+++|+|+.||||||+.+.|+-.+
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999999887543

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.57  E-value=0.00065  Score=55.94  Aligned_cols=26  Identities=35%  Similarity=0.286  Sum_probs=23.0

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .|.+++|+|+.||||||+.+.|.-.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57889999999999999999987654

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.57  E-value=0.00057  Score=55.32  Aligned_cols=26  Identities=31%  Similarity=0.316  Sum_probs=22.4

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      ..+.+++|+|++||||||+.+.++-.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            35778999999999999999988743

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.56  E-value=0.00062  Score=56.95  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=20.8

Q ss_pred             CCEEEEEccCCCCccchhhhhhh
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g   99 (302)
                      +-+++|+|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999876

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.55  E-value=0.00062  Score=59.16  Aligned_cols=23  Identities=30%  Similarity=0.303  Sum_probs=20.9

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|++|||||||++.++|..
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998864

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.52  E-value=0.00023  Score=68.00  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=27.4

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .+++.+.+.+| +.+|+|+|||||||++.+|.++
T Consensus        51 ~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             BSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             eeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            34556667777 9999999999999999999665

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.51  E-value=0.0012  Score=59.85  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=21.5

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..-+.|.||.|+||||+.+.++...
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~  108 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEA  108 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHh
Confidence            3458999999999999999998765

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.51  E-value=0.00074  Score=59.44  Aligned_cols=35  Identities=23%  Similarity=0.231  Sum_probs=26.3

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC  112 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~  112 (302)
                      .+.+++|.|++||||||+.+.++..+.  .|...+.+
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~   66 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   66 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence            356899999999999999999875432  24555554

>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}

Probab=96.50  E-value=0.0034  Score=59.29  Aligned_cols=42  Identities=17%  Similarity=0.193  Sum_probs=26.7

Q ss_pred             cCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHc-CCCcEEEEEEecC
Q psy2071         171 PMLENYQVILLDEAHERTLATDILMGVLKEVIKQR-ADLKLVIMSATLD  218 (302)
Q Consensus       171 al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~-~~~~~~ii~~thd  218 (302)
                      ..+.+.++||+||+|.-..      ..+..++... ....+..+++|..
T Consensus       221 ~~~~~~~liIiDE~H~~~~------~~~~~il~~~~~~~~~l~lSATp~  263 (510)
T 2oca_A          221 EWFSQFGMMMNDECHLATG------KSISSIISGLNNCMFKFGLSGSLR  263 (510)
T ss_dssp             GGGGGEEEEEEETGGGCCH------HHHHHHGGGCTTCCEEEEEESCGG
T ss_pred             hhhhcCCEEEEECCcCCCc------ccHHHHHHhcccCcEEEEEEeCCC
Confidence            4567789999999886443      2233444444 3335677788873

>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}

Probab=96.50  E-value=0.0011  Score=65.23  Aligned_cols=30  Identities=27%  Similarity=0.346  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhh
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIP   95 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~   95 (302)
                      +...+...+-.|.-+.|.+|+|+|||...-
T Consensus        11 ~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~   40 (699)
T 4gl2_A           11 YQMEVAQPALEGKNIIICLPTGCGKTRVAV   40 (699)
T ss_dssp             HHHHHHHHHHSSCCEEECCCTTSCHHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEcCCCCcHHHHHH
Confidence            445555566678889999999999998643

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=96.50  E-value=0.0018  Score=54.97  Aligned_cols=52  Identities=17%  Similarity=0.176  Sum_probs=33.2

Q ss_pred             CCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecC----------HHHHHhhccCCCeee
Q psy2071         174 ENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLD----------AGKFQQYFDNAPLMN  233 (302)
Q Consensus       174 ~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd----------~~~~~~~~d~~~~l~  233 (302)
                      .++++|++||++--+   + +.+++ +++..   .++.||.+-++          ...+..+||.|.-|+
T Consensus        89 ~~~dvViIDEaQF~~---~-v~el~-~~l~~---~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk  150 (234)
T 2orv_A           89 LGVAVIGIDEGQFFP---D-IVEFC-EAMAN---AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT  150 (234)
T ss_dssp             TTCSEEEESSGGGCT---T-HHHHH-HHHHH---TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred             ccCCEEEEEchhhhh---h-HHHHH-HHHHh---CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence            679999999954322   2 22222 23222   47889988888          345667888777665

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=96.49  E-value=0.0018  Score=62.05  Aligned_cols=44  Identities=11%  Similarity=0.206  Sum_probs=29.7

Q ss_pred             cEEEEcCCCCCCcch-HHHHHHHHHHHHHcCCCcEEEEEEecCHH
Q psy2071         177 QVILLDEAHERTLAT-DILMGVLKEVIKQRADLKLVIMSATLDAG  220 (302)
Q Consensus       177 ~lliLDE~~~p~~~l-D~~~~~l~~ll~~~~~~~~~ii~~thd~~  220 (302)
                      =+||+||+|.=.... +.....+.++.+.-+..|+.++++|....
T Consensus       345 ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs  389 (574)
T 2iut_A          345 IVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPS  389 (574)
T ss_dssp             EEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCC
T ss_pred             EEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcc
Confidence            379999965321111 23336677788777788999999998653

>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}

Probab=96.49  E-value=0.013  Score=58.75  Aligned_cols=148  Identities=13%  Similarity=0.092  Sum_probs=69.6

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhh--hccccc---CCCEEEeecCchhhhHHHHHH---Hhhhhhccccccc
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC--VEYSKS---VGAKAVACTQPRRVAAMSVAQ---RVSEEMDCQLGQE  138 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~--g~~~~~---~G~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  138 (302)
                      .......+-.|.-+.+.+|+|||||...-..+  .+....   .+.+.|..  |.+.-+.....   ......+..+...
T Consensus       253 Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~--Pt~~L~~Q~~~~~~~~~~~~~~~v~~~  330 (797)
T 4a2q_A          253 QIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA--TKVPVYEQQKNVFKHHFERQGYSVQGI  330 (797)
T ss_dssp             HHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEEC--SSHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred             HHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEe--CCHHHHHHHHHHHHHhcccCCceEEEE
Confidence            34445566678889999999999997532222  111111   34444432  32211111111   1111111111111


Q ss_pred             eeeeeeecC--CCCccccccccCHHHHHHHhcccc--CCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHH-----cCCCc
Q psy2071         139 VGYSIRFED--CSSPKTVLKYMTDGMLLREGMSDP--MLENYQVILLDEAHERTLATDILMGVLKEVIKQ-----RADLK  209 (302)
Q Consensus       139 v~~~~~~~~--~~~~~~~~~~lS~G~~qr~~la~a--l~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~-----~~~~~  209 (302)
                      .|-......  .......+-..|.|...+..-...  .+.+.++||+||+|.-...- ....++..++..     .....
T Consensus       331 ~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~-~~~~i~~~~~~~~~~~~~~~~~  409 (797)
T 4a2q_A          331 SGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSASQLPQ  409 (797)
T ss_dssp             CCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTS-HHHHHHHHHHHHHHTTCCCCCE
T ss_pred             eCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCc-cHHHHHHHHHHHhhccCCCCCe
Confidence            110000000  000112344567777665443332  36678999999998644432 233444444433     22245


Q ss_pred             EEEEEEec
Q psy2071         210 LVIMSATL  217 (302)
Q Consensus       210 ~~ii~~th  217 (302)
                      +..+++|.
T Consensus       410 ~l~lSATp  417 (797)
T 4a2q_A          410 ILGLTASV  417 (797)
T ss_dssp             EEEEESCC
T ss_pred             EEEEcCCc
Confidence            78888987

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.48  E-value=0.00061  Score=54.93  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=20.4

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +++|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999987654

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.48  E-value=0.003  Score=67.68  Aligned_cols=38  Identities=24%  Similarity=0.186  Sum_probs=31.0

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEe
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA  111 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~  111 (302)
                      +.+|+++.|.|++|+|||||..+++.......+.+.+.
T Consensus       729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~Vlyi  766 (1706)
T 3cmw_A          729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI  766 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEE
Confidence            67999999999999999999999887765544555543

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.46  E-value=0.001  Score=54.65  Aligned_cols=31  Identities=26%  Similarity=0.230  Sum_probs=24.8

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcccccCCCEEEee
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC  112 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~  112 (302)
                      ..+++|+|++||||||+.+.|+..     |...++.
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~   38 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL   38 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence            457999999999999999998764     6555554

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.45  E-value=0.00094  Score=53.94  Aligned_cols=25  Identities=24%  Similarity=0.258  Sum_probs=17.3

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++.+++|.|++||||||+.+.++-.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999999999988643

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.44  E-value=0.00076  Score=55.75  Aligned_cols=27  Identities=26%  Similarity=0.222  Sum_probs=23.2

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +|.+++|.|+.||||||+.+.|+-.+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            366899999999999999999977554

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.44  E-value=0.00089  Score=55.48  Aligned_cols=27  Identities=30%  Similarity=0.272  Sum_probs=23.2

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..|.+++|.|+.||||||+.+.|.-.+
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            357899999999999999999987543

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.41  E-value=0.0026  Score=60.17  Aligned_cols=27  Identities=30%  Similarity=0.318  Sum_probs=22.5

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ....-+.|.||+|+|||++.+.++...
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence            344569999999999999999997653

>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}

Probab=96.41  E-value=0.015  Score=59.35  Aligned_cols=150  Identities=13%  Similarity=0.115  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhh--hccccc---CCCEEEeecCchhhhHHHHHHHh---hhhhcccccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC--VEYSKS---VGAKAVACTQPRRVAAMSVAQRV---SEEMDCQLGQ  137 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~--g~~~~~---~G~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~  137 (302)
                      +.......+-.|.-+.|.+|+|||||...-..+  .+....   .+.+.|..  |.+.-+......+   ....+..+..
T Consensus       252 ~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~--Pt~~L~~Q~~~~~~~~~~~~~~~v~~  329 (936)
T 4a2w_A          252 YQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA--TKVPVYEQQKNVFKHHFERQGYSVQG  329 (936)
T ss_dssp             HHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEEC--SSHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEe--CCHHHHHHHHHHHHHHhcccCceEEE
Confidence            344455566678889999999999997532222  111111   23444432  3221111111111   1111111111


Q ss_pred             ceeeeeeecCC--CCccccccccCHHHHHHHhcccc--CCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHH-----cCCC
Q psy2071         138 EVGYSIRFEDC--SSPKTVLKYMTDGMLLREGMSDP--MLENYQVILLDEAHERTLATDILMGVLKEVIKQ-----RADL  208 (302)
Q Consensus       138 ~v~~~~~~~~~--~~~~~~~~~lS~G~~qr~~la~a--l~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~-----~~~~  208 (302)
                      ..|-.......  ......+-..|.|...+..-...  .+.+.++||+||+|.-... .+....+..++..     ....
T Consensus       330 ~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~-~~~~~i~~~~~~~~~~~~~~~~  408 (936)
T 4a2w_A          330 ISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN-HPYNVLMTRYLEQKFNSASQLP  408 (936)
T ss_dssp             ECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTT-CHHHHHHHHHHHHHHTTCSCCC
T ss_pred             EECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCC-ccHHHHHHHHHHHhhccCCCcC
Confidence            11100000000  00112344577787766544333  3667899999999864433 2333444444443     2224


Q ss_pred             cEEEEEEecC
Q psy2071         209 KLVIMSATLD  218 (302)
Q Consensus       209 ~~~ii~~thd  218 (302)
                      .+..+++|..
T Consensus       409 ~~l~LSATp~  418 (936)
T 4a2w_A          409 QILGLTASVG  418 (936)
T ss_dssp             EEEEEESCCC
T ss_pred             eEEEecCCcc
Confidence            5888899983

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.41  E-value=0.00086  Score=54.48  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=20.9

Q ss_pred             EEEEEccCCCCccchhhhhhhccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +++|.|+.||||||+.+.|+-.+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999876554

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.38  E-value=0.0012  Score=58.08  Aligned_cols=35  Identities=14%  Similarity=0.294  Sum_probs=26.0

Q ss_pred             HHHHHHHHHhCC--EEEEEccCCCCccchhhhhhhcc
Q psy2071          67 RTEFMTLLAQNQ--CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        67 ~~~i~~~i~~g~--i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+.+...+..|.  .+.|.||.|+||||+.+.++..+
T Consensus        26 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           26 IQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             HHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence            344444555554  48999999999999999887654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.38  E-value=0.00089  Score=54.50  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=20.7

Q ss_pred             CCEEEEEccCCCCccchhhhhhhc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      +.+++|.|++||||||+.+.++-.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999887653

>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A

Probab=96.38  E-value=0.013  Score=60.86  Aligned_cols=30  Identities=30%  Similarity=0.437  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHHHhCCEEEEEccCCCCccch
Q psy2071          64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQ   93 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTl   93 (302)
                      +.+.......+-.|+-+.+.+|+|||||+.
T Consensus        80 t~iQ~~ai~~il~g~dvlv~ApTGSGKTl~  109 (1104)
T 4ddu_A           80 TGYQRLWAKRIVQGKSFTMVAPTGVGKTTF  109 (1104)
T ss_dssp             CHHHHHHHHHHTTTCCEEECCSTTCCHHHH
T ss_pred             CHHHHHHHHHHHcCCCEEEEeCCCCcHHHH
Confidence            344555566677788899999999999984

>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*

Probab=96.38  E-value=0.0043  Score=59.17  Aligned_cols=52  Identities=21%  Similarity=0.167  Sum_probs=34.2

Q ss_pred             CCCcEEEEcCCCCCCc-c--hHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhh
Q psy2071         174 ENYQVILLDEAHERTL-A--TDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQY  225 (302)
Q Consensus       174 ~~p~lliLDE~~~p~~-~--lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~  225 (302)
                      .+.+++++||+|.-.. +  ..+....+..+........++.+++|........+
T Consensus       138 ~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i  192 (523)
T 1oyw_A          138 WNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDI  192 (523)
T ss_dssp             SCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHH
T ss_pred             CCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHH
Confidence            6788999999986542 2  22333445555555556678899999887544433

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.37  E-value=0.00092  Score=55.46  Aligned_cols=27  Identities=30%  Similarity=0.330  Sum_probs=23.6

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+|.+++|.|+.||||||+.+.|+-.+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999987644

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.37  E-value=0.00089  Score=54.40  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=20.9

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|++|||||||++.+++..
T Consensus        50 ~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998754

>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*

Probab=96.36  E-value=0.0043  Score=64.18  Aligned_cols=34  Identities=15%  Similarity=0.232  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccc-hhhhhh
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTT-QIPQWC   98 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKST-ll~~i~   98 (302)
                      .+.......+-.|+-+.+.+|+|||||+ +++++.
T Consensus        59 ~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~   93 (1054)
T 1gku_B           59 AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSL   93 (1054)
T ss_dssp             HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHH
Confidence            5666667777789999999999999995 334433

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.36  E-value=0.00092  Score=60.98  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=20.2

Q ss_pred             CEEEEEccCCCCccchhhhhhh
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g   99 (302)
                      .+.+|+|+|||||||+|.+|+-
T Consensus        26 gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           26 GIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999874

>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*

Probab=96.33  E-value=0.0084  Score=58.07  Aligned_cols=53  Identities=21%  Similarity=0.400  Sum_probs=33.2

Q ss_pred             CCCChhhHHHHHhhcCCCh-hHHHHHHHHHHHhCCEEEEEccCCCCccc--hhhhh
Q psy2071          45 YPYTPRYHELHRKRITLPV-FEYRTEFMTLLAQNQCIVLVGETGSGKTT--QIPQW   97 (302)
Q Consensus        45 ~~~~~~~~~l~~~r~~lp~-~~~~~~i~~~i~~g~i~~liG~nGsGKST--ll~~i   97 (302)
                      .+......+.++....+.. ..+...+...+-.|+-+.+++|+|+|||.  +++++
T Consensus        26 ~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal   81 (591)
T 2v1x_A           26 FPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPAL   81 (591)
T ss_dssp             STTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHH
Confidence            4444555555554333321 12345566667778889999999999998  45554

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.31  E-value=0.00089  Score=60.89  Aligned_cols=24  Identities=33%  Similarity=0.480  Sum_probs=20.4

Q ss_pred             EEEEccCCCCccchhhhhhhcccc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVEYSK  103 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~~~~  103 (302)
                      ++|+|++|+|||||++.|.+....
T Consensus        40 I~vvG~~g~GKSTLln~L~~~~~~   63 (361)
T 2qag_A           40 LMVVGESGLGKSTLINSLFLTDLY   63 (361)
T ss_dssp             EEECCCTTSCHHHHHHHHTTCCC-
T ss_pred             EEEEcCCCCCHHHHHHHHhCCCCC
Confidence            699999999999999998776443

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.30  E-value=0.001  Score=52.33  Aligned_cols=22  Identities=32%  Similarity=0.673  Sum_probs=19.6

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|+.|+|||||++.+++.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            3789999999999999999864

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.30  E-value=0.001  Score=52.02  Aligned_cols=22  Identities=32%  Similarity=0.412  Sum_probs=19.7

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++++|+.|+|||||++.+++.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.29  E-value=0.0012  Score=55.65  Aligned_cols=26  Identities=31%  Similarity=0.354  Sum_probs=21.4

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      ..+.+++|+|+.||||||+.+.|+-.
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999988753

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.29  E-value=0.0011  Score=51.95  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.1

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++++|+.|+|||||++.+++..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.28  E-value=0.001  Score=52.48  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=19.5

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|+.|+|||||++.+++.
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            3789999999999999998764

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=96.28  E-value=0.0072  Score=54.09  Aligned_cols=36  Identities=8%  Similarity=0.075  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhCCE---EEEEccCCCCccchhhhhhhccc
Q psy2071          67 RTEFMTLLAQNQC---IVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        67 ~~~i~~~i~~g~i---~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      .+.+...+..|.+   +.+.||.|+||||+.+.++..+.
T Consensus        11 ~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~   49 (334)
T 1a5t_A           11 FEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL   49 (334)
T ss_dssp             HHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence            4556677888774   89999999999999998876543

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.28  E-value=0.0042  Score=62.80  Aligned_cols=36  Identities=19%  Similarity=0.246  Sum_probs=26.6

Q ss_pred             CEEEEEccCCCCccchhhhhhhcccccCC-CEEEeec
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACT  113 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~  113 (302)
                      ..+.|.||+|+|||++.+.++.......+ .+.+++.
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~  625 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT  625 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEech
Confidence            47899999999999999999887654332 3444443

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.26  E-value=0.016  Score=53.93  Aligned_cols=46  Identities=22%  Similarity=0.251  Sum_probs=33.8

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCchhhhHHH
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQPRRVAAMS  122 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~~~~~~~~  122 (302)
                      ..+++++|++|+||||+.-.|+..+.-..| .+.+...++.+.+...
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~  146 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIK  146 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHH
Confidence            358999999999999999888876654424 6777666766655443

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.25  E-value=0.015  Score=51.72  Aligned_cols=41  Identities=15%  Similarity=0.063  Sum_probs=30.0

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcccccC--------CCEEEeecCc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKSV--------GAKAVACTQP  115 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~~--------G~~~i~~~~~  115 (302)
                      ..+..+.|.||+|+|||++++.++..+....        ..+.++|...
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~   91 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL   91 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence            3566899999999999999999987664221        2456677553

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.25  E-value=0.0012  Score=57.66  Aligned_cols=23  Identities=30%  Similarity=0.328  Sum_probs=20.8

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|++|||||||++.++|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999853

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.24  E-value=0.0011  Score=52.60  Aligned_cols=22  Identities=32%  Similarity=0.566  Sum_probs=19.7

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|+.|+|||||++.+++.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            3789999999999999999864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.23  E-value=0.0014  Score=54.98  Aligned_cols=26  Identities=35%  Similarity=0.607  Sum_probs=22.3

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+-+++|+|+.||||||+.+.|+-.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            46789999999999999999887644

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.23  E-value=0.0012  Score=52.13  Aligned_cols=22  Identities=18%  Similarity=0.434  Sum_probs=19.6

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++++|+.|+|||||++.+++.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999873

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.23  E-value=0.0011  Score=53.59  Aligned_cols=22  Identities=41%  Similarity=0.534  Sum_probs=20.0

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++|+|++|+|||||++.+++.
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.23  E-value=0.0012  Score=54.38  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=20.9

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +++|.|++||||||+.+.++..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            79999999999999999998754

>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*

Probab=96.23  E-value=0.015  Score=54.23  Aligned_cols=132  Identities=17%  Similarity=0.170  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccc-eeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQE-VGYSIR  144 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~  144 (302)
                      +.......+..+.-+.|.+|+|+|||...-.++...   .+.+.+..  |.+.-.......+.. +    +.. ++..  
T Consensus        97 ~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~--P~~~L~~Q~~~~~~~-~----~~~~v~~~--  164 (472)
T 2fwr_A           97 YQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVV--PTLALAEQWKERLGI-F----GEEYVGEF--  164 (472)
T ss_dssp             HHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEE--SSHHHHHHHHHHGGG-G----CGGGEEEB--
T ss_pred             HHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEE--CCHHHHHHHHHHHHh-C----CCcceEEE--
Confidence            344445556666778999999999998743332222   23444433  222211222222222 2    112 2221  


Q ss_pred             ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecC
Q psy2071         145 FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLD  218 (302)
Q Consensus       145 ~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd  218 (302)
                       .........+-..|.+...+..  ..+..+.++||+||+|.-... .  .   ..++.......+..+++|..
T Consensus       165 -~g~~~~~~~Ivv~T~~~l~~~~--~~~~~~~~liIvDEaH~~~~~-~--~---~~~~~~~~~~~~l~lSATp~  229 (472)
T 2fwr_A          165 -SGRIKELKPLTVSTYDSAYVNA--EKLGNRFMLLIFDEVHHLPAE-S--Y---VQIAQMSIAPFRLGLTATFE  229 (472)
T ss_dssp             -SSSCBCCCSEEEEEHHHHHHTH--HHHTTTCSEEEEETGGGTTST-T--T---HHHHHTCCCSEEEEEESCCC
T ss_pred             -CCCcCCcCCEEEEEcHHHHHHH--HHhcCCCCEEEEECCcCCCCh-H--H---HHHHHhcCCCeEEEEecCcc
Confidence             1111112233344444443321  123457999999998864322 1  1   22333344456778888875

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.22  E-value=0.0012  Score=52.05  Aligned_cols=23  Identities=26%  Similarity=0.521  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      -++|+|+.|+|||||++.+++..
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            37899999999999999998754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.21  E-value=0.0012  Score=51.75  Aligned_cols=22  Identities=27%  Similarity=0.536  Sum_probs=19.6

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++++|+.|+|||||++.+++.
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.21  E-value=0.0026  Score=50.99  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=25.3

Q ss_pred             HHHHHHHH--hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          68 TEFMTLLA--QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        68 ~~i~~~i~--~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +.+...+.  .+..+.|.||.|+||||+++.++..+
T Consensus        32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            33344443  34678999999999999999887654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.21  E-value=0.0012  Score=51.69  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=19.5

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++|+|+.|+|||||++.+++-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.21  E-value=0.0012  Score=53.61  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=20.4

Q ss_pred             CEEEEEccCCCCccchhhhhhhc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -.++|+|+.|+|||||++.+++.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999864

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.20  E-value=0.0012  Score=53.37  Aligned_cols=23  Identities=17%  Similarity=0.306  Sum_probs=20.5

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|+.|+|||||++.+++..
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            58999999999999999998753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.20  E-value=0.0013  Score=51.98  Aligned_cols=21  Identities=29%  Similarity=0.721  Sum_probs=19.3

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|+.|+|||||++.+++.
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            6 ILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHhC
Confidence            789999999999999999864

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.19  E-value=0.0011  Score=53.27  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.5

Q ss_pred             CEEEEEccCCCCccchhhhhhh
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g   99 (302)
                      -.++|+|++|+|||||++.+++
T Consensus        19 ~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           19 LRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999999874

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.19  E-value=0.0013  Score=51.98  Aligned_cols=22  Identities=36%  Similarity=0.678  Sum_probs=19.7

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|+.|+|||||++.+++.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.18  E-value=0.0013  Score=52.52  Aligned_cols=23  Identities=22%  Similarity=0.609  Sum_probs=20.1

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|+.|||||||++.+++..
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47999999999999999987643

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.18  E-value=0.0013  Score=51.79  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=19.9

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      -++++|+.|+|||||++.+++..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999987643

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.17  E-value=0.0013  Score=51.97  Aligned_cols=21  Identities=38%  Similarity=0.552  Sum_probs=19.1

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|+.|+|||||++.+++.
T Consensus         5 i~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            789999999999999998764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.16  E-value=0.0015  Score=52.08  Aligned_cols=25  Identities=32%  Similarity=0.476  Sum_probs=20.7

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .-++++|+|+.||||||+-+.|+-.
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHH
Confidence            3478999999999999999988654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.16  E-value=0.0013  Score=52.51  Aligned_cols=22  Identities=18%  Similarity=0.598  Sum_probs=19.6

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|+.|+|||||++.+++.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.15  E-value=0.0014  Score=51.55  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.5

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++++|+.|+|||||++.+++-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.15  E-value=0.0014  Score=52.22  Aligned_cols=22  Identities=23%  Similarity=0.641  Sum_probs=19.6

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|+.|+|||||++.+++.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3799999999999999999764

>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}

Probab=96.14  E-value=0.046  Score=47.96  Aligned_cols=157  Identities=18%  Similarity=0.200  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      +.......+.+|+-+.+.+|+|+|||...-..+.  .. .+.+.+..  |.+.-+......+.... ......+...  .
T Consensus        20 ~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~--~~-~~~~liv~--P~~~L~~q~~~~~~~~~-~~~~~~~~~~--~   91 (337)
T 2z0m_A           20 VQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL--EL-GMKSLVVT--PTRELTRQVASHIRDIG-RYMDTKVAEV--Y   91 (337)
T ss_dssp             HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH--HH-TCCEEEEC--SSHHHHHHHHHHHHHHT-TTSCCCEEEE--C
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHH--hh-cCCEEEEe--CCHHHHHHHHHHHHHHh-hhcCCcEEEE--E
Confidence            3445555677888999999999999986433322  11 23333322  33322222222222111 0111111111  1


Q ss_pred             cCCCC-------ccccccccCHHHHHHHhcccc-CCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCC-cEEEEEEe
Q psy2071         146 EDCSS-------PKTVLKYMTDGMLLREGMSDP-MLENYQVILLDEAHERTLATDILMGVLKEVIKQRADL-KLVIMSAT  216 (302)
Q Consensus       146 ~~~~~-------~~~~~~~lS~G~~qr~~la~a-l~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~-~~~ii~~t  216 (302)
                      .....       ....+-..|.+...+..-... .+.+.+++|+||+|.-...  .....+..++...... ...++++|
T Consensus        92 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~--~~~~~~~~~~~~~~~~~~~~~~SAT  169 (337)
T 2z0m_A           92 GGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEM--GFIDDIKIILAQTSNRKITGLFSAT  169 (337)
T ss_dssp             TTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHT--TCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred             CCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcc--ccHHHHHHHHhhCCcccEEEEEeCc
Confidence            11000       112344567776665433222 3567899999998742100  0113344445444433 35567888


Q ss_pred             cCHH---HHHhhccCCCee
Q psy2071         217 LDAG---KFQQYFDNAPLM  232 (302)
Q Consensus       217 hd~~---~~~~~~d~~~~l  232 (302)
                      ...+   .+..+......+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~  188 (337)
T 2z0m_A          170 IPEEIRKVVKDFITNYEEI  188 (337)
T ss_dssp             CCHHHHHHHHHHSCSCEEE
T ss_pred             CCHHHHHHHHHhcCCceee
Confidence            7654   344444444333

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.13  E-value=0.0091  Score=59.52  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.9

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+.|.||+|+|||++.+.++...
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998765

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.13  E-value=0.002  Score=56.80  Aligned_cols=26  Identities=19%  Similarity=0.380  Sum_probs=19.1

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++-+++|.|++||||||+.+.+...+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999887644

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.13  E-value=0.0015  Score=54.33  Aligned_cols=23  Identities=48%  Similarity=0.614  Sum_probs=19.5

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|+.||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999886543

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.12  E-value=0.0015  Score=53.04  Aligned_cols=23  Identities=39%  Similarity=0.395  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +++|.|+.||||||+.+.+.-.+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999987654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.12  E-value=0.0014  Score=52.20  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=19.9

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++|+|+.|+|||||++.+++.
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.11  E-value=0.0014  Score=54.90  Aligned_cols=26  Identities=27%  Similarity=0.343  Sum_probs=21.9

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+.+++|+|++||||||+.+.|+-.+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34679999999999999999987544

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.11  E-value=0.002  Score=58.56  Aligned_cols=22  Identities=23%  Similarity=0.137  Sum_probs=20.5

Q ss_pred             CEEEEEccCCCCccchhhhhhh
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g   99 (302)
                      -.++|+|.+|+|||||++.+++
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~   24 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTK   24 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            4689999999999999999988

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.10  E-value=0.0014  Score=52.82  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=19.3

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|+.|+|||||++.+++.
T Consensus         4 i~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            789999999999999998874

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.10  E-value=0.0015  Score=52.05  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=21.4

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      +.-.++|+|+.|+|||||++.+++.
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3456899999999999999999764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.10  E-value=0.0016  Score=52.86  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=20.2

Q ss_pred             CEEEEEccCCCCccchhhhhhhc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .+++|+|+.||||||+.+.++-.
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.07  E-value=0.0016  Score=51.24  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.5

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|+.|+|||||++.+++-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999863

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.06  E-value=0.0016  Score=53.58  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=20.5

Q ss_pred             CCEEEEEccCCCCccchhhhhhhc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      ..+++|.|+.||||||+.+.|+-.
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999888643

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.05  E-value=0.0017  Score=52.82  Aligned_cols=22  Identities=36%  Similarity=0.697  Sum_probs=19.9

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|+.|+|||||++.+++.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999999874

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.04  E-value=0.0013  Score=61.64  Aligned_cols=43  Identities=23%  Similarity=0.315  Sum_probs=33.9

Q ss_pred             HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEe
Q psy2071          69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA  111 (302)
Q Consensus        69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~  111 (302)
                      |....+-+|+.++|+|++|+|||||++.++.......+.+.+.
T Consensus       143 D~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~  185 (473)
T 1sky_E          143 DLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVF  185 (473)
T ss_dssp             HHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEE
T ss_pred             HHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEE
Confidence            3456667899999999999999999999988766555655443

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.03  E-value=0.002  Score=53.07  Aligned_cols=26  Identities=27%  Similarity=0.446  Sum_probs=21.7

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+-+++|+|+.||||||+.+.|+-.+
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34589999999999999999887543

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.02  E-value=0.0018  Score=53.88  Aligned_cols=22  Identities=36%  Similarity=0.448  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++|+|+.||||||+.+.|+-.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999988643

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.02  E-value=0.0016  Score=53.41  Aligned_cols=22  Identities=36%  Similarity=0.484  Sum_probs=19.8

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++|+|++|+|||||++.+++.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4899999999999999998764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.02  E-value=0.0018  Score=51.23  Aligned_cols=22  Identities=36%  Similarity=0.505  Sum_probs=19.6

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++|+|+.|+|||||++.+++-
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999763

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.02  E-value=0.0016  Score=54.85  Aligned_cols=30  Identities=33%  Similarity=0.526  Sum_probs=24.7

Q ss_pred             HHHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..+.+..++.|+||.||||+|+-+.|+-.+
T Consensus        24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             hhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            345677899999999999999998887543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.01  E-value=0.0018  Score=51.58  Aligned_cols=22  Identities=32%  Similarity=0.590  Sum_probs=19.7

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|+.|+|||||++.+++.
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4889999999999999999864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.00  E-value=0.0026  Score=54.31  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=22.2

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++-+++|+|+.||||||+.+.|+-.
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            45668999999999999999988643

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.00  E-value=0.0017  Score=51.94  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=20.0

Q ss_pred             CEEEEEccCCCCccchhhhhhhc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .+++|+|+.||||||+.+.++-.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.99  E-value=0.0018  Score=52.05  Aligned_cols=22  Identities=32%  Similarity=0.429  Sum_probs=19.7

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|+.|+|||||++.+++.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.98  E-value=0.0018  Score=52.15  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=19.8

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|+.|+|||||++.+++.
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.98  E-value=0.0018  Score=52.51  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=20.1

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|+.|+|||||++.+++.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3889999999999999999875

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.98  E-value=0.0019  Score=50.74  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=19.0

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++++|+.|+|||||++.+++-
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999998763

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.97  E-value=0.01  Score=63.61  Aligned_cols=39  Identities=23%  Similarity=0.154  Sum_probs=29.4

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC  112 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~  112 (302)
                      +.+|.++.|.|++|+|||||.-+++.......+.+.+..
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis  418 (1706)
T 3cmw_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID  418 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence            559999999999999999998887765443334454443

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.97  E-value=0.002  Score=51.22  Aligned_cols=23  Identities=30%  Similarity=0.209  Sum_probs=19.8

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +++|.|+.||||||+.+.+.-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999887543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=95.97  E-value=0.002  Score=55.63  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=20.6

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|.+|||||||++.++|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999998753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.97  E-value=0.0019  Score=51.36  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=20.2

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|+.|+|||||++.+++..
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            48999999999999999998643

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.96  E-value=0.002  Score=51.34  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=19.5

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|+.|+|||||++.+++.
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            3789999999999999998764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.95  E-value=0.0019  Score=52.20  Aligned_cols=22  Identities=32%  Similarity=0.412  Sum_probs=19.8

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++++|+.|+|||||++.+++-
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4889999999999999999864

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.95  E-value=0.0059  Score=61.05  Aligned_cols=25  Identities=32%  Similarity=0.351  Sum_probs=21.5

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..-+.|.||.|||||||.++++...
T Consensus       238 p~GILL~GPPGTGKT~LAraiA~el  262 (806)
T 3cf2_A          238 PRGILLYGPPGTGKTLIARAVANET  262 (806)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3458999999999999999998754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.93  E-value=0.002  Score=51.60  Aligned_cols=22  Identities=27%  Similarity=0.536  Sum_probs=19.8

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|+.|+|||||++.+++.
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4899999999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.92  E-value=0.0021  Score=54.04  Aligned_cols=23  Identities=39%  Similarity=0.434  Sum_probs=19.8

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +++|.|++||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999886543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.92  E-value=0.0021  Score=51.34  Aligned_cols=23  Identities=30%  Similarity=0.484  Sum_probs=20.1

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|+.|+|||||++.+++..
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47999999999999999987643

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.91  E-value=0.002  Score=52.22  Aligned_cols=22  Identities=23%  Similarity=0.419  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|++|+|||||++.+++-
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999877653

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.90  E-value=0.0038  Score=51.92  Aligned_cols=27  Identities=26%  Similarity=0.330  Sum_probs=22.7

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      .--+++|+|..|+|||||++.+++...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            345799999999999999999987653

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.90  E-value=0.0021  Score=51.70  Aligned_cols=23  Identities=22%  Similarity=0.499  Sum_probs=20.1

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      -++|+|+.|+|||||++.+++..
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999997643

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.90  E-value=0.0045  Score=54.97  Aligned_cols=44  Identities=16%  Similarity=0.233  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeec
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT  113 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~  113 (302)
                      ..+.+...+..|.+++|.|+.|+|||||++.++...    |.+++.+.
T Consensus        20 el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~----~~~~~~~~   63 (350)
T 2qen_A           20 ESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER----PGILIDCR   63 (350)
T ss_dssp             HHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS----SEEEEEHH
T ss_pred             HHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc----CcEEEEee
Confidence            345555566668999999999999999999987543    34555543

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.89  E-value=0.0024  Score=54.13  Aligned_cols=28  Identities=32%  Similarity=0.589  Sum_probs=21.6

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhccc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      ..|.+++|.|+.||||||+.+.+.-.+.
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999999876554

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.89  E-value=0.002  Score=52.13  Aligned_cols=23  Identities=39%  Similarity=0.375  Sum_probs=20.0

Q ss_pred             CEEEEEccCCCCccchhhhhhhc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .+++|+|+.||||||+-+.|+-.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999888654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.88  E-value=0.0022  Score=51.29  Aligned_cols=22  Identities=27%  Similarity=0.672  Sum_probs=19.8

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|+.|+|||||++.+++.
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999999864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.88  E-value=0.0022  Score=52.49  Aligned_cols=22  Identities=36%  Similarity=0.527  Sum_probs=19.8

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|++|+|||||++.+++.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3899999999999999999864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.88  E-value=0.0021  Score=55.46  Aligned_cols=26  Identities=27%  Similarity=0.272  Sum_probs=22.2

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+.+++|+|++||||||+.+.|+-.+
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999987643

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=95.87  E-value=0.002  Score=56.00  Aligned_cols=22  Identities=36%  Similarity=0.622  Sum_probs=19.4

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++|+|.+|+|||||++.|.+.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3889999999999999998764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=95.86  E-value=0.0024  Score=56.56  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=20.5

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++|+|.+|+|||||++.++|.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999875

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.86  E-value=0.0036  Score=50.10  Aligned_cols=26  Identities=23%  Similarity=0.463  Sum_probs=22.3

Q ss_pred             CCEEEEEccCCCCccchhhhhhhccc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +..+.|.||+|+||||+++.++..+.
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHH
Confidence            56789999999999999998876553

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.85  E-value=0.0023  Score=52.39  Aligned_cols=22  Identities=27%  Similarity=0.536  Sum_probs=19.7

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|+.|+|||||++.+.+.
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.85  E-value=0.0022  Score=55.10  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=20.6

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|++|+|||||++.++|..
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998743

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.84  E-value=0.0023  Score=51.66  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=19.7

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|++|+|||||++.+++.
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999874

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.84  E-value=0.0023  Score=51.79  Aligned_cols=23  Identities=22%  Similarity=0.458  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      -++|+|+.|+|||||++.+++..
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            48999999999999999998753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.83  E-value=0.0023  Score=53.04  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=20.7

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|+.|+|||||++.+++..
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.83  E-value=0.0024  Score=51.45  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=20.7

Q ss_pred             CCEEEEEccCCCCccchhhhhhhc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .=.++++|+.|+|||||++.+++-
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            345899999999999999998864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.82  E-value=0.0023  Score=52.03  Aligned_cols=23  Identities=26%  Similarity=0.559  Sum_probs=20.2

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      -++|+|+.|+|||||++.+++..
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            48999999999999999998643

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.82  E-value=0.0022  Score=51.98  Aligned_cols=23  Identities=30%  Similarity=0.310  Sum_probs=20.6

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|+.|+|||||++.+++..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.81  E-value=0.0026  Score=56.47  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=21.1

Q ss_pred             CEEEEEccCCCCccchhhhhhhc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .+++|+|.+|+|||||++.++|.
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            47899999999999999999885

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.81  E-value=0.0026  Score=51.43  Aligned_cols=24  Identities=33%  Similarity=0.259  Sum_probs=20.6

Q ss_pred             EEEEEccCCCCccchhhhhhhccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      -++|+|+.|+|||||++.+.+...
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            379999999999999998887543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.80  E-value=0.0026  Score=52.44  Aligned_cols=25  Identities=24%  Similarity=0.315  Sum_probs=21.4

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      ..-+++|+|+.||||||+.+.+.-.
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999988754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.80  E-value=0.0025  Score=52.28  Aligned_cols=23  Identities=26%  Similarity=0.608  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|+.|+|||||++.+++..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48999999999999999998753

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.80  E-value=0.0027  Score=50.88  Aligned_cols=21  Identities=29%  Similarity=0.602  Sum_probs=9.1

Q ss_pred             EEEEEccCCCCccchhhhhhh
Q psy2071          79 CIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g   99 (302)
                      -++|+|+.|+|||||++.+++
T Consensus        10 ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.79  E-value=0.0024  Score=51.89  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=19.8

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|+.|+|||||++.+++-
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4899999999999999999873

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.78  E-value=0.0036  Score=54.24  Aligned_cols=36  Identities=19%  Similarity=0.228  Sum_probs=27.4

Q ss_pred             HHHHHHHHhC-CEEEEEccCCCCccchhhhhhhcccc
Q psy2071          68 TEFMTLLAQN-QCIVLVGETGSGKTTQIPQWCVEYSK  103 (302)
Q Consensus        68 ~~i~~~i~~g-~i~~liG~nGsGKSTll~~i~g~~~~  103 (302)
                      +.+...+... -.++++|.+|+|||||++.+.|....
T Consensus        89 ~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~~~~  125 (262)
T 3cnl_A           89 VLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRAS  125 (262)
T ss_dssp             HHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhccccc
Confidence            4455555554 58999999999999999999876543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.78  E-value=0.0025  Score=51.10  Aligned_cols=22  Identities=32%  Similarity=0.527  Sum_probs=19.6

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++|+|+.|+|||||++.+++.
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999998854

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.78  E-value=0.0025  Score=51.64  Aligned_cols=23  Identities=22%  Similarity=0.559  Sum_probs=20.2

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|+.|+|||||++.+++..
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48999999999999999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d1a1va1	136	c.37.1.14 (A:190-325) HCV helicase domain {Human h	3e-28
d2bmfa2	305	c.37.1.14 (A:178-482) Dengue virus helicase {Dengu	4e-24
d1yksa1	140	c.37.1.14 (A:185-324) YFV helicase domain {Yellow	8e-16
d1br2a2	710	c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick	5e-06
d1lkxa_	684	c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli	7e-06
d1d0xa2	712	c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain	9e-06
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	1e-05
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	1e-05
d1w7ja2	730	c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick	1e-05
d1gkub1	237	c.37.1.16 (B:1-250) Helicase-like "domain" of reve	9e-05
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	0.002
d1yksa2	299	c.37.1.14 (A:325-623) YFV helicase domain {Yellow	0.003

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

 Score =  104 bits (259), Expect = 3e-28
 Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 12/144 (8%)

Query: 73  LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMD 132
           +    Q   L   TGSGK+T++P         V         P   A +     +S+   
Sbjct: 4   VPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVL-----VLNPSVAATLGFGAYMSKAHG 58

Query: 133 CQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192
                  G            +                      Y +I+ DE H     + 
Sbjct: 59  VDPNIRTGVRTITTGSPITYSTYGKFLA-------DGGCSGGAYDIIICDECHSTDATSI 111

Query: 193 ILMGVLKEVIKQRADLKLVIMSAT 216
           + +G + +  +      +V+ +AT
Sbjct: 112 LGIGTVLDQAETAGARLVVLATAT 135

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

 Score = 97.3 bits (241), Expect = 4e-24
 Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 8/162 (4%)

Query: 73  LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMD 132
           +  + +  ++    G+GKT +     V  +   G + +    P RV A  + + +     
Sbjct: 5   IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTL-ILAPTRVVAAEMEEALRGLPI 63

Query: 133 CQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192
                    +       + + ++  M         +S   + NY +I++DEAH    A+ 
Sbjct: 64  RY------QTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASI 117

Query: 193 ILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNV 234
              G +     +  +   + M+AT    +      NAP+M+ 
Sbjct: 118 AARGYIST-RVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDE 158

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

 Score = 70.9 bits (172), Expect = 8e-16
 Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 8/144 (5%)

Query: 73  LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMD 132
           +L +    VL    G+GKT +     +        + +     R V +         ++ 
Sbjct: 3   MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK 62

Query: 133 CQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192
                   ++  F    S + V+  M    L    +    + N++VI++DEAH    A+ 
Sbjct: 63  F-------HTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASI 115

Query: 193 ILMGVLKEVIKQRADLKLVIMSAT 216
              G       +  +   ++M+AT
Sbjct: 116 AARGWAAH-RARANESATILMTAT 138

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 45.5 bits (107), Expect = 5e-06
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 12/64 (18%)

Query: 39  VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
           +NP+   P Y+ +  ++++  KR  +P  ++      YR   M    ++Q I+  GE+G+
Sbjct: 45  INPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYR--SMLQDREDQSILCTGESGA 102

Query: 89  GKTT 92
           GKT 
Sbjct: 103 GKTE 106

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

 Score = 45.1 bits (106), Expect = 7e-06
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 12/64 (18%)

Query: 39  VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
            NPF     Y     + +    +  +P  ++      YR   M    +NQC+++ GE+G+
Sbjct: 40  TNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYR--SMRQSQENQCVIISGESGA 97

Query: 89  GKTT 92
           GKT 
Sbjct: 98  GKTE 101

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 44.7 bits (105), Expect = 9e-06
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 12/64 (18%)

Query: 39  VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
           VNPF   P YT    ++ +  +R  +   +F      YR   M    QNQ +++ GE+G+
Sbjct: 79  VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYR--SMLDDRQNQSLLITGESGA 136

Query: 89  GKTT 92
           GKT 
Sbjct: 137 GKTE 140

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 12/64 (18%)

Query: 39  VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
           VNP+   P YT      +R  ++  +P  +F      Y+   M    +NQ  ++ GE+G+
Sbjct: 75  VNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQN--MVTDRENQSCLITGESGA 132

Query: 89  GKTT 92
           GKT 
Sbjct: 133 GKTE 136

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 12/64 (18%)

Query: 39  VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
           VNP+   P Y P+    +R  KR   P  +F      Y+  FM    +NQ I++ GE+G+
Sbjct: 77  VNPYKWLPVYNPKVVLAYRGKKRQEAPPHIFSISDNAYQ--FMLTDRENQSILITGESGA 134

Query: 89  GKTT 92
           GKT 
Sbjct: 135 GKTV 138

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 12/64 (18%)

Query: 39  VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
           +NP+   P Y       +       +   +F      Y+   M    +NQ I++ GE+G+
Sbjct: 48  INPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYK--QMARDERNQSIIVSGESGA 105

Query: 89  GKTT 92
           GKT 
Sbjct: 106 GKTV 109

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 40.7 bits (94), Expect = 9e-05
 Identities = 32/230 (13%), Positives = 72/230 (31%), Gaps = 23/230 (10%)

Query: 23  ATVNASVSTSIASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVL 82
           A   A+ + + A+   +  F        + E  RK +  P    +  +   + + +    
Sbjct: 5   AAAAAAAAAAAAAAASLCLFPEDFLLKEFVEFFRKCVGEP-RAIQKMWAKRILRKESFAA 63

Query: 83  VGETGSGKTTQIPQWCVEYSKSVGAKAV-ACTQPRRVAAMSVAQRVSEEMD-------CQ 134
              TG GKT+      +  +       V   T    + A    ++ +E+           
Sbjct: 64  TAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGY 123

Query: 135 LGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE------RT 188
               +    +     + +     +T    L +      L ++  I +D+           
Sbjct: 124 YHGRIPKREKENFMQNLRNFKIVITTTQFLSKHY--RELGHFDFIFVDDVDAILKASKNV 181

Query: 189 LATDILMGVLKEVIKQRADLK----LVIMSATLDAGKFQQYFDNAPLMNV 234
                L+G   ++  +    +    L++ +AT   GK  + F    L+N 
Sbjct: 182 DKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQ--LLNF 229

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 27/165 (16%), Positives = 64/165 (38%), Gaps = 23/165 (13%)

Query: 74  LAQNQCIVLVGETGSGKTTQI--------PQWC---------VEYSKSVGAKAVACTQPR 116
           + +   +   G  G GKTT +        P             +    +         PR
Sbjct: 24  IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPR 83

Query: 117 RVAAMSVAQRVSEEMDCQLGQ-EVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLEN 175
           +++     + V+     ++ + E+  ++   +    K  L  ++ G + R  ++  +L N
Sbjct: 84  KISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVN 143

Query: 176 YQVILLDEAHERTLATDILMG--VLKEVIKQRADLKLVIMSATLD 218
            ++ +LD+     +A D      VLK +++   +  +VI+S+  +
Sbjct: 144 AEIYVLDDP---VVAIDEDSKHKVLKSILEILKEKGIVIISSREE 185

>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 1/35 (2%)

Query: 260 CFTRPNEAKKAADDAKM-RFAHIDGDHLTLLNVYH 293
           CF  P E +   D  +  +     G    L   + 
Sbjct: 243 CFEGPEEHEILNDSGETVKCRAPGGAKKPLRPRWC 277

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.98
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.97
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.97
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.96
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.66
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.62
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.81
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	98.8
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.72
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	98.69
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.5
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	98.4
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	98.34
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.28
d1okkd2	207	GTPase domain of the signal recognition particle r	98.27
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.25
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.25
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.2
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.19
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.16
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.06
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.02
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.83
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.82
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.74
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.72
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.66
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.63
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.59
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.55
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.55
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.49
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	97.47
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.46
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.43
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.42
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	97.4
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.35
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.34
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.34
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.32
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.32
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.3
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.29
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.28
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.23
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.19
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.18
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.17
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.14
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.13
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.07
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.07
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.07
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.05
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	97.05
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.04
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.02
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.01
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.99
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.98
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.96
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	96.92
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	96.92
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.89
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.87
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.86
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.86
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.85
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.84
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	96.83
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	96.82
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.81
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.77
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.76
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.76
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.74
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.74
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.73
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.73
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.71
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.71
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.69
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.66
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.66
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.66
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	96.66
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.65
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.65
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.64
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.64
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.63
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.6
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	96.59
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.58
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.58
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.55
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.54
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.51
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.51
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.47
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	96.47
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.47
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.47
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.45
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.45
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.44
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.44
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.41
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.38
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.36
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.34
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.29
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.29
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.26
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.26
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.24
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.22
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.19
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.18
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.17
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.14
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.1
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.08
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.08
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.08
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.06
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.06
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.06
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.06
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.05
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.02
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.02
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.01
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.0
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.98
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.98
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	95.98
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.96
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.94
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.93
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.92
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.92
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.91
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.9
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.9
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.89
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.89
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.86
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.85
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.85
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.84
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	95.83
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.78
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.77
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.74
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.73
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.73
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.72
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.72
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.71
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.7
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.69
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.64
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.63
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.63
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.61
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.6
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.59
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.58
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.57
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.57
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.56
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.55
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.53
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.52
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.52
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.49
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.49
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.44
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.44
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.44
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.42
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.41
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.4
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.39
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.38
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.38
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.36
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.21
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.21
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.18
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.16
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.14
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.12
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.07
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.02
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.01
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	94.99
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.99
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.99
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.98
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.97
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.93
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.89
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.86
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.83
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.74
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.7
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.53
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.42
d1wrba1	238	putative ATP-dependent RNA helicase VlgB {Flatworm	94.26
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	94.25
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.07
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.06
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	93.95
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.8
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	93.68
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.65
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.43
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.34
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.23
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.2
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	93.11
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	93.05
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	92.98
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	92.88
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	92.78
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.76
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	92.69
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.62
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.32
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	92.24
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	92.23
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	92.12
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	92.04
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	91.66
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	91.48
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	91.05
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	91.04
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	91.01
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	90.97
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	90.83
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	90.74
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	90.64
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	90.36
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	90.08
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.06
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	89.6
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	89.26
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.24
d1tuea_	205	Replication protein E1 helicase domain {Human papi	89.19
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	89.16
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	89.05
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.95
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	88.91
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	88.29
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	88.16
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	87.5
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.48
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	87.34
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	85.62
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	84.46
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	83.46
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	83.01
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	82.7
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	82.64
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	81.38
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	81.22
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	81.15

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=4.1e-42  Score=294.32  Aligned_cols=184  Identities=17%  Similarity=0.225  Sum_probs=143.8

Q ss_pred             CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhccc
Q psy2071          60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQ  134 (302)
Q Consensus        60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~  134 (302)
                      .++...+++++++.|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....     ...+.|........+
T Consensus        15 ~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt   94 (239)
T d1v43a3          15 RFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT   94 (239)
T ss_dssp             EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCC
T ss_pred             EECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccch
Confidence            345556788999999999999999999999999999999999999999999997643221     111222333344667


Q ss_pred             cccceeeeeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         135 LGQEVGYSIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       135 ~~~~v~~~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+++.+..+.....                   ..++.+..|||||+||++|||||+.+|++|||||   ||+++|+..
T Consensus        95 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDE---Pts~LD~~~  171 (239)
T d1v43a3          95 VYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE---PLSNLDAKL  171 (239)
T ss_dssp             HHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES---TTTTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecC---CcccCCHHH
Confidence            888887765443321                   2345667799999999999999999999999999   999999988


Q ss_pred             -HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         196 -GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       196 -~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                       ..+.+++.+. ++.|+|++++|||++++.++||++++|+ .|+.    .|.++|..|
T Consensus       172 ~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~-~G~iv~~G~~~el~~~P  228 (239)
T d1v43a3         172 RVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN-RGQLLQIGSPTEVYLRP  228 (239)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCC
Confidence             7788888775 4559999999999999999999999999 6654    666665544

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.1e-42  Score=291.21  Aligned_cols=182  Identities=16%  Similarity=0.203  Sum_probs=119.0

Q ss_pred             ChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhccccc
Q psy2071          62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLG  136 (302)
Q Consensus        62 p~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~  136 (302)
                      ....++++|++.|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....     ...+.|........++.
T Consensus        11 g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~   90 (232)
T d2awna2          11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVA   90 (232)
T ss_dssp             TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC-------
T ss_pred             CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHH
Confidence            3445678999999999999999999999999999999999999999999997653221     11122222334566788


Q ss_pred             cceeeeeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H
Q psy2071         137 QEVGYSIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G  196 (302)
Q Consensus       137 ~~v~~~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~  196 (302)
                      +++.+........                   ..++.+..|||||+||++|||||+.+|++|||||   ||+++|+.. .
T Consensus        91 eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDE---Pts~LD~~~~~  167 (232)
T d2awna2          91 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE---PLSNLDAALRV  167 (232)
T ss_dssp             --------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEES---TTTTSCHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CCCCCCHHHHH
Confidence            8887765433221                   2345567799999999999999999999999999   999999887 6


Q ss_pred             HHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecC
Q psy2071         197 VLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTP  247 (302)
Q Consensus       197 ~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~  247 (302)
                      .+.+++.+. ++.|+|+|++|||++++..+|||+++|+ .|+    +.|.+++..|
T Consensus       168 ~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~-~G~iv~~G~~~el~~~P  222 (232)
T d2awna2         168 QMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD-AGRVAQVGKPLELYHYP  222 (232)
T ss_dssp             HHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHSC
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEeCHHHHHhCC
Confidence            777777664 5569999999999999999999999998 665    3566665444

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3e-41  Score=289.40  Aligned_cols=180  Identities=17%  Similarity=0.204  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHH---H---HHHhh----hhhccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMS---V---AQRVS----EEMDCQ  134 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~---~---~~~~~----~~~~~~  134 (302)
                      .++++|++.|++||+++|+||||||||||+++|+|+.+|++|++.++|.+........   .   ...++    .....+
T Consensus        19 ~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~t   98 (240)
T d3dhwc1          19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT   98 (240)
T ss_dssp             EEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSB
T ss_pred             EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCcc
Confidence            4578999999999999999999999999999999999999999999998753322111   1   11222    233557


Q ss_pred             cccceeeeeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         135 LGQEVGYSIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       135 ~~~~v~~~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+++.+..+.....                   ..+..+..|||||+||++|||||+.+|++||+||   ||+++|+..
T Consensus        99 v~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDE---Pt~~LD~~~  175 (240)
T d3dhwc1          99 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDE---ATSALDPAT  175 (240)
T ss_dssp             HHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEES---GGGSSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEecc---ccccCCHHH
Confidence            778777665433221                   2345567799999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecCC
Q psy2071         196 -GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTPE  248 (302)
Q Consensus       196 -~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~~  248 (302)
                       ..+.+++.+.. +.|+|+|++|||++++..+|||+++|+ .|+    +.|.++|..|.
T Consensus       176 ~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~-~G~iv~~G~~~ei~~~P~  233 (240)
T d3dhwc1         176 TRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVIS-NGELIEQDTVSEVFSHPK  233 (240)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEE-TTEEEEEEETTTTTCSSC
T ss_pred             hhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEE-CCEEEEECCHHHHHhCCC
Confidence             77888887754 459999999999999999999999999 565    46777766554

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=6.1e-41  Score=285.30  Aligned_cols=178  Identities=19%  Similarity=0.208  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-----HHHHHhhhhhcccccccee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-----SVAQRVSEEMDCQLGQEVG  140 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~  140 (302)
                      ++++|++.|++||+++|+||||||||||+++|+|++.|++|+|.++|.+.......     .+.|........++.+|+.
T Consensus        15 aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~   94 (229)
T d3d31a2          15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLE   94 (229)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHH
T ss_pred             EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHH
Confidence            47889999999999999999999999999999999999999999999775432211     1112222334567777776


Q ss_pred             eeeeecCC----------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071         141 YSIRFEDC----------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK  203 (302)
Q Consensus       141 ~~~~~~~~----------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~  203 (302)
                      +.......                ...++.+..|||||+||++|||||+.+|++|||||   ||+++|+.. ..+.+++.
T Consensus        95 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDE---Pts~LD~~~~~~i~~~l~  171 (229)
T d3d31a2          95 FGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDE---PLSALDPRTQENAREMLS  171 (229)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEES---SSTTSCHHHHHHHHHHHH
T ss_pred             HHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecC---CCcCCCHHHHHHHHHHHH
Confidence            65533221                12455677899999999999999999999999999   999999888 77888887


Q ss_pred             Hc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         204 QR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       204 ~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                      .. ++.|+|++++|||++++.++||++++|+ .|+.    .|.+++..|
T Consensus       172 ~l~~~~g~tii~vtHd~~~~~~~~drv~vm~-~G~iv~~g~~~el~~~P  219 (229)
T d3d31a2         172 VLHKKNKLTVLHITHDQTEARIMADRIAVVM-DGKLIQVGKPEEIFEKP  219 (229)
T ss_dssp             HHHHHTTCEEEEEESCHHHHHHHCSEEEEES-SSCEEEEECHHHHHSSC
T ss_pred             HHHhcCCcEEEEEcCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCC
Confidence            75 4569999999999999999999999998 6653    566665544

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=1.3e-41  Score=291.58  Aligned_cols=183  Identities=17%  Similarity=0.192  Sum_probs=143.5

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----------HHHHHHHhhh
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----------AMSVAQRVSE  129 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----------~~~~~~~~~~  129 (302)
                      +....++++|++.|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....           ...+.|....
T Consensus        13 yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L   92 (240)
T d1g2912          13 FGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL   92 (240)
T ss_dssp             ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred             ECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhh
Confidence            34445688999999999999999999999999999999999999999999986542211           1111122223


Q ss_pred             hhccccccceeeeeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071         130 EMDCQLGQEVGYSIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA  190 (302)
Q Consensus       130 ~~~~~~~~~v~~~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~  190 (302)
                      ....++.+++.+........                   ..++.+..|||||+||++|||||+.+|++|||||   ||++
T Consensus        93 ~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDE---Pt~~  169 (240)
T d1g2912          93 YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDE---PLSN  169 (240)
T ss_dssp             CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEEC---TTTT
T ss_pred             cchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecC---CCcc
Confidence            34557777776655333221                   2355677899999999999999999999999999   9999


Q ss_pred             hHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecC
Q psy2071         191 TDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTP  247 (302)
Q Consensus       191 lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~  247 (302)
                      +|+.. ..+.+++.+.. +.|+|+|++|||++++..+||++++|+ .|+    +.|.+++..|
T Consensus       170 LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~-~G~iv~~G~~~el~~~P  231 (240)
T d1g2912         170 LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMN-RGVLQQVGSPDEVYDKP  231 (240)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHSC
T ss_pred             cCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCC
Confidence            99888 77888887654 459999999999999999999999999 665    3666666555

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=2.5e-41  Score=289.63  Aligned_cols=179  Identities=14%  Similarity=0.153  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh----------hHHHHHHHhhhhhccc
Q psy2071          65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV----------AAMSVAQRVSEEMDCQ  134 (302)
Q Consensus        65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~  134 (302)
                      .++++|++.|++||+++|+||||||||||+++|+|+++|++|++.++|.+....          ....+.|........+
T Consensus        19 ~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~lt   98 (242)
T d1oxxk2          19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLT   98 (242)
T ss_dssp             EEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSC
T ss_pred             EEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEecccccccccc
Confidence            357899999999999999999999999999999999999999999988754221          1111122222334568


Q ss_pred             cccceeeeeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         135 LGQEVGYSIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       135 ~~~~v~~~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+++.+.++.....                   ..+..+..||||||||++|||||+.+|++||+||   ||+++|+..
T Consensus        99 v~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDE---Pt~~LD~~~  175 (242)
T d1oxxk2          99 AFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDE---PFSNLDARM  175 (242)
T ss_dssp             HHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES---TTTTSCGGG
T ss_pred             HHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecC---CccCCCHHH
Confidence            888888776443221                   2355667799999999999999999999999999   999999877


Q ss_pred             -HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         196 -GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       196 -~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                       ..+.+++++. ++.|+|+|++|||++++.++||++++|+ .|+.    .|.+++..|
T Consensus       176 ~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~-~G~iv~~g~~~el~~~P  232 (242)
T d1oxxk2         176 RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLV-KGKLVQVGKPEDLYDNP  232 (242)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHSC
T ss_pred             HHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCC
Confidence             7788887765 4559999999999999999999999999 6653    666666544

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=4.7e-40  Score=280.45  Aligned_cols=168  Identities=14%  Similarity=0.121  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH-------HHHhhh----hhccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV-------AQRVSE----EMDCQ  134 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~-------~~~~~~----~~~~~  134 (302)
                      ++++|++.|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.........       ...+++    .+..+
T Consensus        20 al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t   99 (230)
T d1l2ta_          20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLT   99 (230)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSC
T ss_pred             EEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCcc
Confidence            5788999999999999999999999999999999999999999999976543322111       112222    34567


Q ss_pred             cccceeeeeeecCC---------------------C--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071         135 LGQEVGYSIRFEDC---------------------S--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT  191 (302)
Q Consensus       135 ~~~~v~~~~~~~~~---------------------~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l  191 (302)
                      +.+++.+...+...                     .  ..+..+..|||||+||++|||||+.+|++|||||   ||+++
T Consensus       100 v~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDE---PTs~L  176 (230)
T d1l2ta_         100 ALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ---PTGAL  176 (230)
T ss_dssp             HHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES---TTTTS
T ss_pred             HHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecC---Ccccc
Confidence            77777654422110                     0  1234567799999999999999999999999999   99999


Q ss_pred             HHHH-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         192 DILM-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       192 D~~~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |+.. ..+.+++... ++.|+|+|++|||++.+ ++|||+++|+ .|+.
T Consensus       177 D~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~-~G~I  223 (230)
T d1l2ta_         177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLK-DGEV  223 (230)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEE-TTEE
T ss_pred             CHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEE-CCEE
Confidence            9988 7788888875 46699999999999976 7999999998 7753

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=9.8e-40  Score=281.43  Aligned_cols=174  Identities=12%  Similarity=0.097  Sum_probs=137.0

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHH--------HHhhhhhc
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA--------QRVSEEMD  132 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~--------~~~~~~~~  132 (302)
                      +....++++|++.|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..........        +....+..
T Consensus        16 yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~   95 (240)
T d1ji0a_          16 YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE   95 (240)
T ss_dssp             ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred             ECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCc
Confidence            4445568899999999999999999999999999999999999999999999875432211111        11111234


Q ss_pred             cccccceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071         133 CQLGQEVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI  193 (302)
Q Consensus       133 ~~~~~~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~  193 (302)
                      .++.+++.+......                   ....++.+..||||||||++|||||+.+|++|||||   ||+++|+
T Consensus        96 ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDE---Pt~gLD~  172 (240)
T d1ji0a_          96 LTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE---PSLGLAP  172 (240)
T ss_dssp             SBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEEC---TTTTCCH
T ss_pred             ccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecC---CCcCCCH
Confidence            466665543321111                   012345567799999999999999999999999999   9999999


Q ss_pred             HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      .. ..+.+++++.++.|+||+++|||++++.++|||+++|+ .|+.
T Consensus       173 ~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~-~G~i  217 (240)
T d1ji0a_         173 ILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLE-TGQI  217 (240)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEE-TTEE
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence            88 78889998877779999999999999999999999999 6764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=8.1e-40  Score=284.48  Aligned_cols=182  Identities=19%  Similarity=0.175  Sum_probs=139.5

Q ss_pred             ChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-------------hHHHHHHH--
Q psy2071          62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-------------AAMSVAQR--  126 (302)
Q Consensus        62 p~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-------------~~~~~~~~--  126 (302)
                      ....++++|++.|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....             .......+  
T Consensus        13 g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig   92 (258)
T d1b0ua_          13 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT   92 (258)
T ss_dssp             TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEE
T ss_pred             CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceE
Confidence            344567899999999999999999999999999999999999999999998764211             00111111  


Q ss_pred             -h----hhhhccccccceeeee-eecC------------------C-C-CccccccccCHHHHHHHhccccCCCCCcEEE
Q psy2071         127 -V----SEEMDCQLGQEVGYSI-RFED------------------C-S-SPKTVLKYMTDGMLLREGMSDPMLENYQVIL  180 (302)
Q Consensus       127 -~----~~~~~~~~~~~v~~~~-~~~~------------------~-~-~~~~~~~~lS~G~~qr~~la~al~~~p~lli  180 (302)
                       +    ......++.+++.+.. ....                  . . ..++.+..|||||+||++|||||+.+|++||
T Consensus        93 ~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~lli  172 (258)
T d1b0ua_          93 MVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL  172 (258)
T ss_dssp             EECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred             EEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEE
Confidence             1    1223456666665432 1100                  0 0 1234567899999999999999999999999


Q ss_pred             EcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071         181 LDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP  247 (302)
Q Consensus       181 LDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~  247 (302)
                      |||   ||+++|+.. ..+.+++++.++.|.|++++|||++++..+|||+++|+ .|+.    .|.+++..|
T Consensus       173 lDE---PT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~-~G~iv~~g~~~ev~~~P  240 (258)
T d1b0ua_         173 FDE---PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH-QGKIEEEGDPEQVFGNP  240 (258)
T ss_dssp             EES---TTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHSC
T ss_pred             ecc---ccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCC
Confidence            999   999999888 77888888776678999999999999999999999999 6653    566666554

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.5e-38  Score=273.44  Aligned_cols=174  Identities=18%  Similarity=0.193  Sum_probs=136.5

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH--HHHHHhhh----hhccc
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM--SVAQRVSE----EMDCQ  134 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~--~~~~~~~~----~~~~~  134 (302)
                      +....+++++++.|++||+++|+||||||||||+++|+|+++|++|++.+.|.++......  ....++.+    ....+
T Consensus        12 yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~lt   91 (238)
T d1vpla_          12 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ   91 (238)
T ss_dssp             ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred             ECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCcc
Confidence            3444568899999999999999999999999999999999999999999999865332211  11111112    22334


Q ss_pred             cccceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         135 LGQEVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       135 ~~~~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      +.+++.+...+..                   ....+..+..|||||+||++||+||+.+|++|||||   ||+++|+..
T Consensus        92 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDE---Pt~gLD~~~  168 (238)
T d1vpla_          92 GIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE---PTSGLDVLN  168 (238)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES---TTTTCCHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecC---CCCCCCHHH
Confidence            4455433322111                   112456788899999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.++++...+.|.||+++|||++++..+|||+++|+ .|+.
T Consensus       169 ~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~-~G~i  211 (238)
T d1vpla_         169 AREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIH-NGTI  211 (238)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEE-TTEE
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence             78899998877779999999999999999999999999 6653

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=4.9e-38  Score=268.53  Aligned_cols=173  Identities=19%  Similarity=0.195  Sum_probs=134.8

Q ss_pred             HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhccccccceeeee
Q psy2071          69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEVGYSI  143 (302)
Q Consensus        69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~  143 (302)
                      ++++.+. +++++|+||||||||||+++|+|+++|++|+|.++|.+.....     ...+.|..+.....++.+++.|.+
T Consensus        17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l   95 (240)
T d2onka1          17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGL   95 (240)
T ss_dssp             EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTC
T ss_pred             EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhh
Confidence            4566664 6899999999999999999999999999999999997643221     111222223334567888887765


Q ss_pred             eec-----------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc
Q psy2071         144 RFE-----------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR  205 (302)
Q Consensus       144 ~~~-----------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~  205 (302)
                      +..                 .....+..+..|||||+||++|||||+.+|++|||||   ||+++|+.. ..+.+++...
T Consensus        96 ~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDE---Pts~LD~~~~~~i~~~i~~l  172 (240)
T d2onka1          96 RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDE---PLSAVDLKTKGVLMEELRFV  172 (240)
T ss_dssp             TTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES---TTSSCCHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecC---ccccCCHHHHHHHHHHHHHH
Confidence            321                 1123455677899999999999999999999999999   999999888 7788888765


Q ss_pred             C-CCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeec
Q psy2071         206 A-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYT  246 (302)
Q Consensus       206 ~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~  246 (302)
                      . +.|+|++++|||++++.++||++++|+ .|+    +.|.+++..
T Consensus       173 ~~~~g~tvi~vtHd~~~~~~~adri~vm~-~G~ii~~G~~~el~~~  217 (240)
T d2onka1         173 QREFDVPILHVTHDLIEAAMLADEVAVML-NGRIVEKGKLKELFSA  217 (240)
T ss_dssp             HHHHTCCEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHS
T ss_pred             HHhcCCeEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEecHHHHhcC
Confidence            3 458999999999999999999999998 665    466666543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.9e-38  Score=275.84  Aligned_cols=174  Identities=11%  Similarity=0.074  Sum_probs=136.9

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHH--------HHhhhhhc
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA--------QRVSEEMD  132 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~--------~~~~~~~~  132 (302)
                      +....++++|+++|++||+++|+||||||||||+++|+|+++|++|+|.+.|.+..........        +.......
T Consensus        14 yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~   93 (254)
T d1g6ha_          14 FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE   93 (254)
T ss_dssp             ETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred             ECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCC
Confidence            4455578999999999999999999999999999999999999999999999765332222111        11112334


Q ss_pred             cccccceeeeee--------------------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEE
Q psy2071         133 CQLGQEVGYSIR--------------------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVIL  180 (302)
Q Consensus       133 ~~~~~~v~~~~~--------------------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lli  180 (302)
                      .++.+|+.+...                                +......++.+..||||||||++|||||+.+|++||
T Consensus        94 ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~lli  173 (254)
T d1g6ha_          94 MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIV  173 (254)
T ss_dssp             SBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred             CeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchh
Confidence            555565543210                                000112345678899999999999999999999999


Q ss_pred             EcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         181 LDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       181 LDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      |||   ||+++|+.. ..+.+++.+.++.|+||+++|||++++.++|||+++|+ .|+.
T Consensus       174 lDE---Pt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~-~G~i  228 (254)
T d1g6ha_         174 MDE---PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMF-NGQI  228 (254)
T ss_dssp             EES---TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEE-TTEE
T ss_pred             hcC---CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEe-CCEE
Confidence            999   999999887 77888888777779999999999999999999999999 6653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=263.08  Aligned_cols=167  Identities=15%  Similarity=0.173  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v  139 (302)
                      ++++|++.|++|++++|+||||||||||+++|+|+++|++|+|.++|.+...........++   .+   .+..++.+++
T Consensus        29 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni  108 (251)
T d1jj7a_          29 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENI  108 (251)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHH
T ss_pred             eEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhhh
Confidence            57899999999999999999999999999999999999999999999876554433333332   22   2245666776


Q ss_pred             eeeeeecCC---------------------CCccc----cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         140 GYSIRFEDC---------------------SSPKT----VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       140 ~~~~~~~~~---------------------~~~~~----~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      .+.......                     ...++    ....|||||+||++|||||+.+|++|||||   ||+++|+.
T Consensus       109 ~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDE---pTs~LD~~  185 (251)
T d1jj7a_         109 AYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDD---ATSALDAN  185 (251)
T ss_dssp             HCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEES---TTTTCCHH
T ss_pred             hhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecC---cCcccChh
Confidence            664321100                     01122    234699999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         195 M-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       195 ~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      . ..+.+++.... +.+.|+|++||+++.+ ++||+|++|+ .|+
T Consensus       186 ~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~-~~aDrI~vl~-~G~  228 (251)
T d1jj7a_         186 SQLQVEQLLYESPERYSRSVLLITQHLSLV-EQADHILFLE-GGA  228 (251)
T ss_dssp             HHHHHHHHHHTCGGGGGCEEEEECSCHHHH-HTCSEEEEEE-TTE
T ss_pred             hHHHHHHHHHHHhhhcCCEEEEEeCCHHHH-HhCCEEEEEE-CCE
Confidence            7 67788877654 3489999999999876 5699999999 665

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.6e-36  Score=259.77  Aligned_cols=167  Identities=15%  Similarity=0.140  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v  139 (302)
                      ++++|++.|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+............+   .+   .+..++.+|+
T Consensus        18 vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi   97 (241)
T d2pmka1          18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI   97 (241)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHH
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCccccccc
Confidence            46889999999999999999999999999999999999999999999876554433333322   22   2345666776


Q ss_pred             eeeeeecC-------------------C-CCccc----cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFED-------------------C-SSPKT----VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~~-------------------~-~~~~~----~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+......                   . ...++    ....|||||+||++|||||+.+|++|||||   ||+++|+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDE---pts~LD~~~  174 (241)
T d2pmka1          98 SLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE---ATSALDYES  174 (241)
T ss_dssp             CTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECC---CCSCCCHHH
T ss_pred             cccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhC---CccccCHHH
Confidence            65421100                   0 01111    235699999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                       ..+.+.+....+ +.|+|++||+++.+ ..||+|++|+ .|+.
T Consensus       175 ~~~i~~~l~~l~~-~~Tvi~itH~l~~~-~~~D~i~vl~-~G~I  215 (241)
T d2pmka1         175 EHVIMRNMHKICK-GRTVIIIAHRLSTV-KNADRIIVME-KGKI  215 (241)
T ss_dssp             HHHHHHHHHHHHT-TSEEEEECSSGGGG-TTSSEEEEEE-TTEE
T ss_pred             HHHHHHHHHHHhC-CCEEEEEECCHHHH-HhCCEEEEEE-CCEE
Confidence             667777776544 67999999999877 5799999999 6653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-35  Score=252.54  Aligned_cols=167  Identities=17%  Similarity=0.179  Sum_probs=125.2

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhhh----hccccccce
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSEE----MDCQLGQEV  139 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~v  139 (302)
                      +++|++.|++||+++|+||||||||||+++|+|+. |++|++.+.|.+............   +.+.    +..++.+.+
T Consensus        15 l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   93 (231)
T d1l7vc_          15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL   93 (231)
T ss_dssp             SCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHH
T ss_pred             ecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHh
Confidence            45678999999999999999999999999999975 688999999986543322222111   1111    111111111


Q ss_pred             eeee--------------eecCCCCccccccccCHHHHHHHhccccCCC-------CCcEEEEcCCCCCCcchHHHH-HH
Q psy2071         140 GYSI--------------RFEDCSSPKTVLKYMTDGMLLREGMSDPMLE-------NYQVILLDEAHERTLATDILM-GV  197 (302)
Q Consensus       140 ~~~~--------------~~~~~~~~~~~~~~lS~G~~qr~~la~al~~-------~p~lliLDE~~~p~~~lD~~~-~~  197 (302)
                      .+..              .+......++.+..|||||+||++||++|+.       +|++|||||   ||+++|+.. ..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDE---Pt~gLD~~~~~~  170 (231)
T d1l7vc_          94 TLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE---PMNSLDVAQQSA  170 (231)
T ss_dssp             HHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS---CSTTCCHHHHHH
T ss_pred             hhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcC---CCCCCCHHHHHH
Confidence            1110              0111122345677899999999999999986       779999999   999999887 77


Q ss_pred             HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         198 LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       198 l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +.++++...+.|.||+++|||++++.++||++++|+ .|+.
T Consensus       171 i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~-~G~i  210 (231)
T d1l7vc_         171 LDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLK-GGKM  210 (231)
T ss_dssp             HHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEE-TTEE
T ss_pred             HHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEE-CCEE
Confidence            889988877779999999999999999999999999 6654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=2.2e-36  Score=260.72  Aligned_cols=166  Identities=15%  Similarity=0.175  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh---hhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~v  139 (302)
                      ++++|++.|++|++++|+||||||||||+++|+|++.|++|+|.++|.+...........   .+.+   .+..++.+|+
T Consensus        17 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi   96 (242)
T d1mv5a_          17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENL   96 (242)
T ss_dssp             SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHT
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhhhe
Confidence            468899999999999999999999999999999999999999999998654332211111   1222   2234556665


Q ss_pred             eeeeeecC--------------------C-CCcccc----ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         140 GYSIRFED--------------------C-SSPKTV----LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       140 ~~~~~~~~--------------------~-~~~~~~----~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      .+......                    . ...++.    ...|||||+||++|||||+.+|++|||||   ||+++|+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDE---pts~LD~~  173 (242)
T d1mv5a_          97 TYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDE---ATASLDSE  173 (242)
T ss_dssp             TSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEC---CSCSSCSS
T ss_pred             ecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecC---CccccCHH
Confidence            44321100                    0 011122    23599999999999999999999999999   99999987


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                      . ..+.+.++...+ +.|+|++||+++.+. .||+|++|+ .|+
T Consensus       174 ~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~-~~D~i~vl~-~G~  214 (242)
T d1mv5a_         174 SESMVQKALDSLMK-GRTTLVIAHRLSTIV-DADKIYFIE-KGQ  214 (242)
T ss_dssp             SCCHHHHHHHHHHT-TSEEEEECCSHHHHH-HCSEEEEEE-TTE
T ss_pred             HHHHHHHHHHHHcC-CCEEEEEECCHHHHH-hCCEEEEEE-CCE
Confidence            7 667777776544 789999999999875 699999999 665

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.98  E-value=2.4e-35  Score=255.72  Aligned_cols=167  Identities=16%  Similarity=0.218  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh---hh---hccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS---EE---MDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~v  139 (302)
                      ++++|++.|++|++++|+||||||||||+++|+|+++|++|+|.++|.+............+.   +.   +..++.+++
T Consensus        30 ~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~  109 (253)
T d3b60a1          30 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNI  109 (253)
T ss_dssp             SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHH
T ss_pred             eeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhhh
Confidence            478899999999999999999999999999999999999999999998766544333333221   11   122333333


Q ss_pred             eeeee-------------e-------cCCC-Cccc----cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071         140 GYSIR-------------F-------EDCS-SPKT----VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL  194 (302)
Q Consensus       140 ~~~~~-------------~-------~~~~-~~~~----~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~  194 (302)
                      .+...             .       .... ..++    ....|||||+||++|||||+.+|++|||||   ||+++|+.
T Consensus       110 ~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDE---pts~LD~~  186 (253)
T d3b60a1         110 AYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDE---ATSALDTE  186 (253)
T ss_dssp             HTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEET---TTSSCCHH
T ss_pred             hhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEecc---ccccCCHH
Confidence            22110             0       0000 0112    234699999999999999999999999999   99999988


Q ss_pred             H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      . ..+.+.+....+ +.|+|++||+++.+ .+||+|++|+ .|+.
T Consensus       187 ~~~~i~~~l~~l~~-~~Tvi~itH~l~~~-~~~D~v~vl~-~G~I  228 (253)
T d3b60a1         187 SERAIQAALDELQK-NRTSLVIAHRLSTI-EQADEIVVVE-DGII  228 (253)
T ss_dssp             HHHHHHHHHHHHHT-TSEEEEECSCGGGT-TTCSEEEEEE-TTEE
T ss_pred             HHHHHHHHHHHhcc-CCEEEEEECCHHHH-HhCCEEEEEE-CCEE
Confidence            8 677788776554 67999999999977 5799999999 6664

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.97  E-value=5.6e-35  Score=253.17  Aligned_cols=166  Identities=14%  Similarity=0.168  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh------hhhccccccce
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS------EEMDCQLGQEV  139 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v  139 (302)
                      ++++|++.|++|++++|+|+||||||||+++|+|++.|++|.|.++|.+.+..........++      ..+..++.+|+
T Consensus        33 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi  112 (255)
T d2hyda1          33 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI  112 (255)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHH
T ss_pred             ceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHHHH
Confidence            478999999999999999999999999999999999999999999998776544333333322      12345666776


Q ss_pred             eeeeeecC-------------------C-CCcccc----ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071         140 GYSIRFED-------------------C-SSPKTV----LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM  195 (302)
Q Consensus       140 ~~~~~~~~-------------------~-~~~~~~----~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~  195 (302)
                      .+......                   . ...++.    ...|||||+||++|||||+.+|++|||||   ||+++|+..
T Consensus       113 ~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDE---pts~LD~~t  189 (255)
T d2hyda1         113 LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE---ATSALDLES  189 (255)
T ss_dssp             GGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEES---TTTTCCHHH
T ss_pred             hccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeC---ccccCCHHH
Confidence            55421100                   0 011222    24599999999999999999999999999   999999888


Q ss_pred             -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071         196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR  237 (302)
Q Consensus       196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~  237 (302)
                       ..+.+.+..... +.|+|++||+++.+ .+||+|++|+ .|+
T Consensus       190 ~~~i~~~l~~l~~-~~TvI~itH~~~~~-~~~D~ii~l~-~G~  229 (255)
T d2hyda1         190 ESIIQEALDVLSK-DRTTLIVAHRLSTI-THADKIVVIE-NGH  229 (255)
T ss_dssp             HHHHHHHHHHHTT-TSEEEEECSSGGGT-TTCSEEEEEE-TTE
T ss_pred             HHHHHHHHHHHhc-CCEEEEEeCCHHHH-HhCCEEEEEE-CCE
Confidence             777788776654 67889999999977 5799999998 665

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.6e-34  Score=251.98  Aligned_cols=161  Identities=14%  Similarity=0.126  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF  145 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (302)
                      ++++|++.|++|++++|+||||||||||+++|+|++.|++|.+.++|.-    +...+.   ...+..++.+++.+....
T Consensus        51 vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i----~~v~Q~---~~l~~~tv~eni~~~~~~  123 (281)
T d1r0wa_          51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV----SFCSQF---SWIMPGTIKENIIFGVSY  123 (281)
T ss_dssp             EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCE----EEECSS---CCCCSEEHHHHHTTTSCC
T ss_pred             EEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEE----EEEecc---ccccCceeeccccccccc
Confidence            4789999999999999999999999999999999999999999887731    100000   001112233333221110


Q ss_pred             ------------------cCCC-Ccc----ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071         146 ------------------EDCS-SPK----TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV  201 (302)
Q Consensus       146 ------------------~~~~-~~~----~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l  201 (302)
                                        .... ..+    .....|||||+||++|||||+.+|++|||||   ||+++|+.. ..+.+.
T Consensus       124 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDE---Pts~LD~~~~~~i~~~  200 (281)
T d1r0wa_         124 DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDS---PFGYLDVFTEEQVFES  200 (281)
T ss_dssp             CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEES---CCCSSCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcC---ccccCCHHHHHHHHHH
Confidence                              0000 011    2234599999999999999999999999999   999999876 555443


Q ss_pred             HHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071         202 IKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT  238 (302)
Q Consensus       202 l~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~  238 (302)
                      +......+.|+|++||+++.+ ++||+|++|+ .|+.
T Consensus       201 ~~~~~~~~~tvi~itH~~~~l-~~aDrI~vl~-~G~i  235 (281)
T d1r0wa_         201 CVCKLMANKTRILVTSKMEHL-RKADKILILH-QGSS  235 (281)
T ss_dssp             CCCCCTTTSEEEEECSCHHHH-HTCSEEEEEE-TTEE
T ss_pred             HHHHhhCCCEEEEEechHHHH-HhCCEEEEEE-CCEE
Confidence            222233467889999999876 6899999999 6653

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.96  E-value=1.5e-33  Score=236.56  Aligned_cols=161  Identities=15%  Similarity=0.168  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH--HHHHHhhhhhcccccccee---
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM--SVAQRVSEEMDCQLGQEVG---  140 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~---  140 (302)
                      +++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+.......  ...+........++.+++.   
T Consensus        16 vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~   95 (200)
T d1sgwa_          16 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVA   95 (200)
T ss_dssp             EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHH
T ss_pred             EEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999998765432100  0000000000111111111   


Q ss_pred             -------------eeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHH-c
Q psy2071         141 -------------YSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQ-R  205 (302)
Q Consensus       141 -------------~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~-~  205 (302)
                                   ..+........+..+..||+||+||++||+||+.+|+++||||   ||+++|+.. ..+.+.+.. .
T Consensus        96 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDE---Pt~gLD~~~~~~i~~~l~~~~  172 (200)
T d1sgwa_          96 SLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDD---PVVAIDEDSKHKVLKSILEIL  172 (200)
T ss_dssp             HHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEES---TTTTSCTTTHHHHHHHHHHHH
T ss_pred             HhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcC---cccccCHHHHHHHHHHHHHHH
Confidence                         0111111112345678899999999999999999999999999   999999766 445554443 3


Q ss_pred             CCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         206 ADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       206 ~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      ++.+++|++++|++    .+||.+.+|+
T Consensus       173 ~~~~~~ii~~~~~l----~~~D~~~~l~  196 (200)
T d1sgwa_         173 KEKGIVIISSREEL----SYCDVNENLH  196 (200)
T ss_dssp             HHHSEEEEEESSCC----TTSSEEEEGG
T ss_pred             hCCCEEEEEEechh----hhcchhhhee
Confidence            44578888888876    4799877775

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.62  E-value=1.4e-17  Score=135.25  Aligned_cols=147  Identities=12%  Similarity=0.074  Sum_probs=84.5

Q ss_pred             EEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccc---cccceeeeeeecCCCCcccccc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQ---LGQEVGYSIRFEDCSSPKTVLK  156 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~  156 (302)
                      ++|+||||||||||++.++|.+.+..|.+.+.+......... ....+.......   ............ ....+....
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   80 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR-TGFRIITTEGKKKIFSSKFFTSKKLVG-SYGVNVQYF   80 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------C-CEEEEEETTCCEEEEEETTCCCSSEET-TEEECHHHH
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHh-hhhhhhhhhHHHHHHhhhhhhhhhhhh-hhhcCcchh
Confidence            789999999999999999999999999888776543211100 000000000000   000000000110 001122334


Q ss_pred             ccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH-HHHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071         157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL-MGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN  233 (302)
Q Consensus       157 ~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~-~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~  233 (302)
                      .+++|++++.++++++..+|++|++||++.... .+.. ...+.++   ..+.+.+++.++|+.. ...+++++..+.
T Consensus        81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~-~~~~~~~~l~~~---l~~~~~~il~~~h~~~-~~~~~~~i~~~~  153 (178)
T d1ye8a1          81 EELAIPILERAYREAKKDRRKVIIIDEIGKMEL-FSKKFRDLVRQI---MHDPNVNVVATIPIRD-VHPLVKEIRRLP  153 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG-GCHHHHHHHHHH---HTCTTSEEEEECCSSC-CSHHHHHHHTCT
T ss_pred             hhhhhhhHHHHHHHHHhcCCCceeecCCCccch-hhHHHHHHHHHH---hccCCCEEEEEEccHH-HHHhhceEEEEe
Confidence            589999999999999999999999999432211 1222 2334443   3455788999999864 344666655544

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.81  E-value=5.9e-09  Score=90.59  Aligned_cols=74  Identities=15%  Similarity=0.100  Sum_probs=56.2

Q ss_pred             ccccCHHHHHHHhccc----cCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCC
Q psy2071         155 LKYMTDGMLLREGMSD----PMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNA  229 (302)
Q Consensus       155 ~~~lS~G~~qr~~la~----al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~  229 (302)
                      +..+|+|+++...++.    .....+.++++||   |..++++.. ..+.++++.... +.-++++||....+ +.+|++
T Consensus       217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDE---pe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~~~-~~~d~~  291 (308)
T d1e69a_         217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDE---VDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKIVM-EAADLL  291 (308)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEES---CCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTTGG-GGCSEE
T ss_pred             hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhh---ccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHH-HhcccE
Confidence            4569999998765533    3677889999999   999999887 677777776543 46777889998766 577887


Q ss_pred             Ceee
Q psy2071         230 PLMN  233 (302)
Q Consensus       230 ~~l~  233 (302)
                      ..+.
T Consensus       292 ~~v~  295 (308)
T d1e69a_         292 HGVT  295 (308)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6655

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=98.80  E-value=9.2e-09  Score=78.72  Aligned_cols=128  Identities=22%  Similarity=0.279  Sum_probs=67.0

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTV  154 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  154 (302)
                      +.++..|.+|+|||||+++..++.    ..| .+.+.  .|++..+....+.+...+............     ......
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~----~~~~~vli~--~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~-----~~~~~~   75 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYA----AQGYKVLVL--NPSVAATLGFGAYMSKAHGVDPNIRTGVRT-----ITTGSP   75 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHH----TTTCCEEEE--ESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----ECCCCS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH----HcCCcEEEE--cChHHHHHHHHHHHHHHhhccccccccccc-----cccccc
Confidence            467788999999999998755432    233 44443  344443334444444433222111111111     111222


Q ss_pred             ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEe
Q psy2071         155 LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT  216 (302)
Q Consensus       155 ~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~t  216 (302)
                      ....+.+...+  .....+.+.+++|+||+|.-....+.....+.+.++...+..++.++||
T Consensus        76 ~~~~~~~~~~~--~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~TAT  135 (136)
T d1a1va1          76 ITYSTYGKFLA--DGGCSGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATAT  135 (136)
T ss_dssp             EEEEEHHHHHH--TTGGGGCCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESS
T ss_pred             eEEEeeeeecc--ccchhhhcCCEEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence            33344444333  2344578999999999998655555444444444443334445666665

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=98.69  E-value=3e-08  Score=75.25  Aligned_cols=133  Identities=22%  Similarity=0.250  Sum_probs=70.5

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee-ecCCCCc
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR-FEDCSSP  151 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~  151 (302)
                      +++|+.+.|.+|+|||||+..-..+.......+ .+.+..  +.+............       ..+.+... .......
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~--p~~~l~~q~~~~~~~-------~~~~~~~~~~~~~~~~   74 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLA--PTRVVLSEMKEAFHG-------LDVKFHTQAFSAHGSG   74 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEE--SSHHHHHHHHHHTTT-------SCEEEESSCCCCCCCS
T ss_pred             HHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeee--cchhHHHHHHHHhhh-------hhhhhccccccccccc
Confidence            578999999999999999776333222222233 333332  222222111111111       11111111 1111122


Q ss_pred             cccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEe
Q psy2071         152 KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT  216 (302)
Q Consensus       152 ~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~t  216 (302)
                      .......+.++..+..+....+.+.+++|+||+|.-....+.....+..+. ......+..|++|
T Consensus        75 ~~~~~~~~~~~l~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~-~~~~~~~l~lTAT  138 (140)
T d1yksa1          75 REVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRA-RANESATILMTAT  138 (140)
T ss_dssp             SCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHH-HTTSCEEEEECSS
T ss_pred             ccchhhhhHHHHHHHHhccccccceeEEEEccccccChhhHHHHHHHHHHh-hCCCCCEEEEEcC
Confidence            233444566666677777888999999999999975444443333333333 2344466667666

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.50  E-value=9.7e-08  Score=79.39  Aligned_cols=122  Identities=17%  Similarity=0.104  Sum_probs=61.5

Q ss_pred             CCEEEEEccCCCCccchhhhhhhccc-ccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYS-KSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVL  155 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~-~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  155 (302)
                      ++++.|.|||.+||||+||+++-..- ...|. .+-.                ........+.+-.  ++..   .+...
T Consensus        35 ~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~-~vpA----------------~~~~i~~~d~I~~--~~~~---~d~~~   92 (224)
T d1ewqa2          35 HELVLITGPNMAGKSTFLRQTALIALLAQVGS-FVPA----------------EEAHLPLFDGIYT--RIGA---SDDLA   92 (224)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTC-CBSS----------------SEEEECCCSEEEE--ECCC--------
T ss_pred             CcEEEEECCCccccchhhhhhHHHHHHHhccc-eeec----------------CceEEeecceEEE--EECC---Ccccc
Confidence            46899999999999999998854321 11121 0000                0000111112111  1111   11111


Q ss_pred             cccCH--HHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071         156 KYMTD--GMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVIKQRADLKLVIMSATLDAGKFQ  223 (302)
Q Consensus       156 ~~lS~--G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~~~~~~ii~~thd~~~~~  223 (302)
                      ..+|.  .+.+++.-....+.+-.++|+||   ...++++.-  .+...+++.+.+.+..++++||..+...
T Consensus        93 ~~~StF~~el~~~~~il~~~~~~sLvliDE---~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2          93 GGKSTFMVEMEEVALILKEATENSLVLLDE---VGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             -CCSHHHHHHHHHHHHHHHCCTTEEEEEES---TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             CCccHHHHhHHHHHHHhccCCCCcEEeecc---cccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence            22232  33444443333467788999999   566666433  3334444433334677888999876543

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.40  E-value=6.3e-07  Score=72.87  Aligned_cols=157  Identities=15%  Similarity=0.119  Sum_probs=74.1

Q ss_pred             HHHHHHHhCCEEEEEccCCCCccchh--hhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee-e
Q psy2071          69 EFMTLLAQNQCIVLVGETGSGKTTQI--PQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR-F  145 (302)
Q Consensus        69 ~i~~~i~~g~i~~liG~nGsGKSTll--~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~  145 (302)
                      +....+.+|+-+.|.+|+|||||+..  .++..+  ...+.+.+.  .|.+.-+.....++.....  ....++.... .
T Consensus        32 ~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~--~~~~~vl~l--~P~~~L~~q~~~~~~~~~~--~~~~v~~~~~~~  105 (202)
T d2p6ra3          32 EAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREA--IKGGKSLYV--VPLRALAGEKYESFKKWEK--IGLRIGISTGDY  105 (202)
T ss_dssp             HHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHH--HTTCCEEEE--ESSHHHHHHHHHHHTTTTT--TTCCEEEECSSC
T ss_pred             HHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHh--hccCcceee--cccHHHHHHHHHHHHHHhh--ccccceeeccCc
Confidence            33445667888899999999999753  222222  123444433  2332212222222211111  0111111100 0


Q ss_pred             --cCCCCccccccccCHHHHHHHh-ccccCCCCCcEEEEcCCCCCCcc-hHHHH-HHHHHHHHHcCCCcEEEEEEe-cCH
Q psy2071         146 --EDCSSPKTVLKYMTDGMLLREG-MSDPMLENYQVILLDEAHERTLA-TDILM-GVLKEVIKQRADLKLVIMSAT-LDA  219 (302)
Q Consensus       146 --~~~~~~~~~~~~lS~G~~qr~~-la~al~~~p~lliLDE~~~p~~~-lD~~~-~~l~~ll~~~~~~~~~ii~~t-hd~  219 (302)
                        .........+-..+..+..... -....+.+.+++|+||+|.-... -+... ..+..+........++.+++| .+.
T Consensus       106 ~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~~~~l~lSATl~n~  185 (202)
T d2p6ra3         106 ESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNV  185 (202)
T ss_dssp             BCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTTH
T ss_pred             ccccccccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHhcccccchHHHHHHHHHHhcCCCCcEEEEcCCCCcH
Confidence              0000111122223433333322 22345668899999998853222 22333 333333333345568889999 488


Q ss_pred             HHHHhhccCCCe
Q psy2071         220 GKFQQYFDNAPL  231 (302)
Q Consensus       220 ~~~~~~~d~~~~  231 (302)
                      +.+.++.+.-.+
T Consensus       186 ~~~~~~l~~~~~  197 (202)
T d2p6ra3         186 TEIAEWLDADYY  197 (202)
T ss_dssp             HHHHHHTTCEEE
T ss_pred             HHHHHHcCCCee
Confidence            888777654333

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=98.34  E-value=7.6e-07  Score=76.53  Aligned_cols=136  Identities=17%  Similarity=0.233  Sum_probs=75.9

Q ss_pred             HHHhCCEEEEEccCCCCccch-h-hhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeee-eecCCC
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQ-I-PQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSI-RFEDCS  149 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTl-l-~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~  149 (302)
                      .+.+|+.+.|.+|+|||||+. + +++..... ..+.+.+.  .|.+.-+..+.+++...   .    +++.. ......
T Consensus         5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~-~~~~~lvi--~Ptr~La~q~~~~l~~~---~----~~~~~~~~~~~~   74 (305)
T d2bmfa2           5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIK-RGLRTLIL--APTRVVAAEMEEALRGL---P----IRYQTPAIRAEH   74 (305)
T ss_dssp             SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-HTCCEEEE--ESSHHHHHHHHHHTTTS---C----CBCCC-------
T ss_pred             HhhcCCcEEEEECCCCCHHHHHHHHHHHHHHh-cCCEEEEE--ccHHHHHHHHHHHHhcC---C----cceeeeEEeecc
Confidence            357899999999999999974 3 33222222 22333332  24333222333322211   1    11111 111222


Q ss_pred             CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCH
Q psy2071         150 SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDA  219 (302)
Q Consensus       150 ~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~  219 (302)
                      ...+.+...+.|...+.........+.+++|+||+|.-....+.....+..+.. ........+++|...
T Consensus        75 ~~~~~i~~~t~~~l~~~~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~~-~~~~~~v~~SAT~~~  143 (305)
T d2bmfa2          75 TGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVE-MGEAAGIFMTATPPG  143 (305)
T ss_dssp             -CCCSEEEEEHHHHHHHHTSSSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-HTSCEEEEECSSCTT
T ss_pred             cCccccccCCcHHHHHHHhcCccccceeEEEeeeeeecchhhHHHHHHHHHhhc-cccceEEEeecCCCc
Confidence            334556667778888888888888999999999999765444444444444433 344567778888754

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=3e-07  Score=76.86  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=21.0

Q ss_pred             hCCEEEEEccCCCCccchhhhhhh
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g   99 (302)
                      .+.++.|.|||.+||||+||+++-
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHH
Confidence            457899999999999999999854

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.27  E-value=2.2e-06  Score=69.96  Aligned_cols=133  Identities=14%  Similarity=0.211  Sum_probs=75.9

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVL  155 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  155 (302)
                      ++.+++++||||+||||.+--|+..+.-....+.+...+..|.++..+.+..+..++..+          ......... 
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~----------~~~~~~~d~-   73 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPV----------IQGPEGTDP-   73 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCE----------ECCCTTCCH-
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceE----------EeccCCccH-
Confidence            578999999999999999877776665333477788888889998888877766554321          111111111 


Q ss_pred             cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH--HHHHHHHHHHc----CCCcEEEEEEecCHHHHHh
Q psy2071         156 KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL--MGVLKEVIKQR----ADLKLVIMSATLDAGKFQQ  224 (302)
Q Consensus       156 ~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~--~~~l~~ll~~~----~~~~~~ii~~thd~~~~~~  224 (302)
                           ...-+-.+..+-..+.++||+|=++......+..  +..+.+.+...    ...-..|+.++...+.+.+
T Consensus        74 -----~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~  143 (207)
T d1okkd2          74 -----AALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQ  143 (207)
T ss_dssp             -----HHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHH
T ss_pred             -----HHHHHHHHHHHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHH
Confidence                 0111111222224478999999976443333221  12334433321    1234566666765554443

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.6e-07  Score=73.08  Aligned_cols=38  Identities=26%  Similarity=0.188  Sum_probs=30.2

Q ss_pred             CEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP  115 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~  115 (302)
                      ..+.|+||+|||||||++.++..+....+.+.+.+..+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~   39 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEE   39 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence            45899999999999999999998877666665554443

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.25  E-value=3.6e-06  Score=68.84  Aligned_cols=128  Identities=19%  Similarity=0.251  Sum_probs=72.2

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVL  155 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  155 (302)
                      ...+++++||+|+||||.+--|+..+.-....+.+...+..|.++..+.+..+..++..        +..  ....... 
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~--------~~~--~~~~~~~-   79 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVP--------VYG--EPGEKDV-   79 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCC--------EEC--CTTCCCH-
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcc--------eee--cccchhh-
Confidence            34578999999999999987777766543347888888889999888877776655432        111  1111111 


Q ss_pred             cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH-HHHHHHHHHHHcCC-CcEEEEEEecCH
Q psy2071         156 KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI-LMGVLKEVIKQRAD-LKLVIMSATLDA  219 (302)
Q Consensus       156 ~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~-~~~~l~~ll~~~~~-~~~~ii~~thd~  219 (302)
                           -...+-++..+...+.+++|+|=++.....-+. .+..+.++...... ....|+.++...
T Consensus        80 -----~~~~~~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~  140 (211)
T d1j8yf2          80 -----VGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ  140 (211)
T ss_dssp             -----HHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG
T ss_pred             -----hHHHHHHHHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCc
Confidence                 111122344445678999999997643322222 22455555554433 334555556543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.19  E-value=2.7e-06  Score=69.77  Aligned_cols=128  Identities=20%  Similarity=0.232  Sum_probs=74.8

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcccccc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK  156 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  156 (302)
                      ..+++++||||+||||.+--|+-.+.-....+.+...+..|.++..+.+..+..++..        +...  ......  
T Consensus        11 p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~--------~~~~--~~~~d~--   78 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGAT--------VISH--SEGADP--   78 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCE--------EECC--STTCCH--
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCcc--------cccc--CCCCcH--
Confidence            3488999999999999987777665433347788888889999888877766654322        1111  111010  


Q ss_pred             ccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH-HHHHHHHHHHcC-------CCcEEEEEEecCHHHH
Q psy2071         157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL-MGVLKEVIKQRA-------DLKLVIMSATLDAGKF  222 (302)
Q Consensus       157 ~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~-~~~l~~ll~~~~-------~~~~~ii~~thd~~~~  222 (302)
                          -...+...+.+...+.+++|+|=++--  ..|.. +..+..+.+...       ..-..++.++...+.+
T Consensus        79 ----~~~~~~~~~~~~~~~~d~ilIDTaGr~--~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~  146 (213)
T d1vmaa2          79 ----AAVAFDAVAHALARNKDVVIIDTAGRL--HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGL  146 (213)
T ss_dssp             ----HHHHHHHHHHHHHTTCSEEEEEECCCC--SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHH
T ss_pred             ----HHHHHHHHHHHHHcCCCEEEEeccccc--cchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchh
Confidence                111222334455678999999996532  33322 244555544322       2234556666544433

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=6.3e-06  Score=67.31  Aligned_cols=129  Identities=19%  Similarity=0.232  Sum_probs=75.0

Q ss_pred             CEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccccc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKY  157 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  157 (302)
                      .+++++||||+||||.+--|+-.+.-..-.+.+...+..|.++..+.+..+..++..        +.  ...........
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~--------~~--~~~~~~d~~~~   79 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP--------VI--AQHTGADSASV   79 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCC--------EE--CCSTTCCHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCc--------cc--ccccCCCHHHH
Confidence            478899999999999987777666533347888888888999888887776655322        11  11111111110


Q ss_pred             cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH-HHHHHHHHHHcC-------CCcEEEEEEecCHHHHHh
Q psy2071         158 MTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL-MGVLKEVIKQRA-------DLKLVIMSATLDAGKFQQ  224 (302)
Q Consensus       158 lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~-~~~l~~ll~~~~-------~~~~~ii~~thd~~~~~~  224 (302)
                            .+-.+..+-..+.+++|+|=++-  ...|.. ++.+.++.+...       ..-.-++.++...+.+.+
T Consensus        80 ------l~~~~~~a~~~~~d~ilIDTaGr--~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~  146 (211)
T d2qy9a2          80 ------IFDAIQAAKARNIDVLIADTAGR--LQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ  146 (211)
T ss_dssp             ------HHHHHHHHHHTTCSEEEECCCCC--GGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHH
T ss_pred             ------HHHHHHHHHHcCCCEEEeccCCC--ccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHH
Confidence                  11111122246889999998643  334533 355555554322       223455666665554443

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.06  E-value=2.9e-06  Score=75.91  Aligned_cols=76  Identities=16%  Similarity=0.161  Sum_probs=57.8

Q ss_pred             cccccCHHHHHHHhccc----cCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccC
Q psy2071         154 VLKYMTDGMLLREGMSD----PMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDN  228 (302)
Q Consensus       154 ~~~~lS~G~~qr~~la~----al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~  228 (302)
                      .+..+||||+.++++|.    ..+.+++++||||   |+.++|+.. ..+.+++......+.-+|++||+.. +...+|+
T Consensus       329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE---~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~-~~~~ad~  404 (427)
T d1w1wa_         329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDE---VDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT-MFEKSDA  404 (427)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESS---TTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH-HHTTCSE
T ss_pred             hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeC---CCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHhccc
Confidence            45678999998866543    3466778999999   999999877 6777777665544567888899987 5567898


Q ss_pred             CCeee
Q psy2071         229 APLMN  233 (302)
Q Consensus       229 ~~~l~  233 (302)
                      .+.+.
T Consensus       405 ~~~V~  409 (427)
T d1w1wa_         405 LVGVY  409 (427)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76554

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.02  E-value=1.1e-05  Score=65.66  Aligned_cols=125  Identities=22%  Similarity=0.223  Sum_probs=73.3

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVL  155 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  155 (302)
                      +..++.++||||+||||.+--|+..+.-..-.+.+...+..|.++..+....+..++..        +....  ...   
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~--------~~~~~--~~~---   75 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVP--------VLEVM--DGE---   75 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCC--------EEECC--TTC---
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCc--------ccccc--ccc---
Confidence            45689999999999999988887766533336777788888988888877766654322        11110  000   


Q ss_pred             cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCC-cEEEEEEec
Q psy2071         156 KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADL-KLVIMSATL  217 (302)
Q Consensus       156 ~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~-~~~ii~~th  217 (302)
                       .+..  -.+.+...+...+.+++|+|=++......+ .+..+.++.+..... -..++.++.
T Consensus        76 -~~~~--~~~~~~~~~~~~~~d~vlIDTaGr~~~d~~-~~~el~~~~~~~~~~~~llv~~a~~  134 (207)
T d1ls1a2          76 -SPES--IRRRVEEKARLEARDLILVDTAGRLQIDEP-LMGELARLKEVLGPDEVLLVLDAMT  134 (207)
T ss_dssp             -CHHH--HHHHHHHHHHHHTCCEEEEECCCCSSCCHH-HHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred             -hhhH--HHHHHHHHHhhccCcceeecccccchhhhh-hHHHHHHHHhhcCCceEEEEecccc
Confidence             0111  111122233456889999999765443332 335555665544332 334444444

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.83  E-value=2.9e-05  Score=63.78  Aligned_cols=35  Identities=20%  Similarity=0.290  Sum_probs=26.8

Q ss_pred             HHHHHHHHHhC--CEEEEEccCCCCccchhhhhhhcc
Q psy2071          67 RTEFMTLLAQN--QCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        67 ~~~i~~~i~~g--~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+.+...++.+  ..+.|.||+|+||||+++.++-.+
T Consensus        33 ~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          33 VKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             HHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            44455556666  458899999999999999987654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.82  E-value=1.9e-05  Score=68.78  Aligned_cols=45  Identities=24%  Similarity=0.226  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEE
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV  110 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i  110 (302)
                      ...-+...+..+..+.|.|++||||||+++.|++.+++..--+.+
T Consensus       155 ~~~~l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti  199 (323)
T d1g6oa_         155 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  199 (323)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             HHHHHHHHHHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence            445567788999999999999999999999999988765443444

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=4.5e-05  Score=64.15  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=21.8

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhh
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g   99 (302)
                      -+|+++.|.|++|+|||||+-+++.
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            4599999999999999999877654

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.72  E-value=2.5e-05  Score=64.47  Aligned_cols=47  Identities=17%  Similarity=0.215  Sum_probs=32.3

Q ss_pred             HHHHHH-HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeec
Q psy2071          67 RTEFMT-LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT  113 (302)
Q Consensus        67 ~~~i~~-~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~  113 (302)
                      ++++.. =+++|.++.|.|++||||||+.-+++-...-..+.+.+...
T Consensus        15 LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~   62 (242)
T d1tf7a2          15 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY   62 (242)
T ss_dssp             HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred             HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeec
Confidence            444433 26699999999999999999988887654323334444443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=8.3e-06  Score=63.34  Aligned_cols=33  Identities=15%  Similarity=0.150  Sum_probs=25.1

Q ss_pred             EEEEEccCCCCccchhhhhhhcccccCCCEEEe
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA  111 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~  111 (302)
                      +++|+|++|||||||++.|+..+......+.+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~   36 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI   36 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence            789999999999999999987655332234433

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=5.2e-05  Score=62.01  Aligned_cols=36  Identities=22%  Similarity=0.365  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHhCCE--EEEEccCCCCccchhhhhhhcc
Q psy2071          66 YRTEFMTLLAQNQC--IVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        66 ~~~~i~~~i~~g~i--~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..+.+...+..+.+  +.|.||.|+||||++++++..+
T Consensus        22 ~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          22 VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHh
Confidence            45556666777775  7899999999999999987654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.59  E-value=1.5e-05  Score=65.58  Aligned_cols=41  Identities=17%  Similarity=0.217  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCE
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAK  108 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~  108 (302)
                      .+.+...+ +|++.+++|++|+|||||++.|.+......|.+
T Consensus        86 ~~~L~~~l-~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v  126 (225)
T d1u0la2          86 IEELKEYL-KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV  126 (225)
T ss_dssp             HHHHHHHH-SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred             HhhHHHHh-cCCeEEEECCCCCCHHHHHHhhcchhhhhccCc
Confidence            34444445 799999999999999999999987655445544

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.55  E-value=9.9e-06  Score=64.38  Aligned_cols=26  Identities=23%  Similarity=0.334  Sum_probs=23.0

Q ss_pred             CCEEEEEccCCCCccchhhhhhhccc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      |.+++|+||+||||||+++.+...++
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            78999999999999999999876543

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.55  E-value=4.5e-05  Score=62.18  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=26.1

Q ss_pred             HHHHHH-HHHhCCEEEEEccCCCCccchhhhhhh
Q psy2071          67 RTEFMT-LLAQNQCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        67 ~~~i~~-~i~~g~i~~liG~nGsGKSTll~~i~g   99 (302)
                      ++++.. =+++|+++.|.|++|+||||+.-+++.
T Consensus        15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            444443 378999999999999999999876654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.49  E-value=1.7e-05  Score=61.85  Aligned_cols=33  Identities=24%  Similarity=0.295  Sum_probs=26.0

Q ss_pred             CEEEEEccCCCCccchhhhhhhcccccCCCEEE
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV  110 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i  110 (302)
                      .+++|+|.+|||||||+..++..+......+.+
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~v   34 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT   34 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            478999999999999999988877654334444

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.47  E-value=8e-05  Score=61.47  Aligned_cols=43  Identities=21%  Similarity=0.239  Sum_probs=30.0

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhh
Q psy2071          52 HELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIP   95 (302)
Q Consensus        52 ~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~   95 (302)
                      .++.+....-| |.+.+.....+-.|+-+++++|+|+|||+..-
T Consensus        34 ~~~~~~~~~~p-~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~   76 (237)
T d1gkub1          34 VEFFRKCVGEP-RAIQKMWAKRILRKESFAATAPTGVGKTSFGL   76 (237)
T ss_dssp             HHHHHTTTCSC-CHHHHHHHHHHHTTCCEECCCCBTSCSHHHHH
T ss_pred             HHHHHhccCCC-CHHHHHHHHHHHCCCCEEEEecCCChHHHHHH
Confidence            34443333334 56666666677799999999999999997643

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.46  E-value=5.4e-05  Score=63.19  Aligned_cols=21  Identities=33%  Similarity=0.425  Sum_probs=19.1

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      +.|.||+|||||++.+.++..
T Consensus        43 vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          43 VLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHhhc
Confidence            789999999999999998764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=0.0002  Score=58.34  Aligned_cols=35  Identities=20%  Similarity=0.327  Sum_probs=26.6

Q ss_pred             HHHHHHHHHhCCE--EEEEccCCCCccchhhhhhhcc
Q psy2071          67 RTEFMTLLAQNQC--IVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        67 ~~~i~~~i~~g~i--~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+.+...+..+.+  +.|.||+|+||||+.+.++..+
T Consensus        24 ~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          24 IDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             HHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHH
Confidence            4455556666653  7899999999999999887544

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00017  Score=60.47  Aligned_cols=26  Identities=27%  Similarity=0.344  Sum_probs=22.0

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ...-+.|.||+|||||++.+.++..+
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHc
Confidence            34568899999999999999998654

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.40  E-value=0.0005  Score=54.63  Aligned_cols=71  Identities=18%  Similarity=0.192  Sum_probs=40.1

Q ss_pred             cCHHHHHHHh-ccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEec--CHHHHHhhccCC
Q psy2071         158 MTDGMLLREG-MSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATL--DAGKFQQYFDNA  229 (302)
Q Consensus       158 lS~G~~qr~~-la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~th--d~~~~~~~~d~~  229 (302)
                      .+........ .......+.+++|+||+|.-..... ....+..+........+..+++|.  +.+.+.++++..
T Consensus       107 ~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~-~~~~~~~~~~~~~~~~~l~~SATp~~~~~~~~~~~~~l  180 (200)
T d1wp9a1         107 ATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYA-YVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNL  180 (200)
T ss_dssp             ECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCH-HHHHHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHHHT
T ss_pred             cccchhHHHHhhhhhhccccceEEEEehhhhhcchh-HHHHHHHHHhcCCCCcEEEEEecCCCcHHHHHHHHhcC
Confidence            4444443332 2334567899999999986433222 112333333334444577788886  556677777653

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.35  E-value=8.3e-05  Score=62.08  Aligned_cols=24  Identities=33%  Similarity=0.392  Sum_probs=21.0

Q ss_pred             CEEEEEccCCCCccchhhhhhhcc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .-+.+.||.|||||++.+.++...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEecCCCCChhHHHHHHHHHc
Confidence            348999999999999999998754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=2.3e-05  Score=60.93  Aligned_cols=27  Identities=26%  Similarity=0.421  Sum_probs=23.8

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +.+.+++|.|++||||||+.+.|+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            567899999999999999999987654

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.00027  Score=57.14  Aligned_cols=37  Identities=8%  Similarity=0.070  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhCC---EEEEEccCCCCccchhhhhhhccc
Q psy2071          66 YRTEFMTLLAQNQ---CIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        66 ~~~~i~~~i~~g~---i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +.+.+...+..|.   .+.+.||.|+||||+.+.++..+.
T Consensus        10 ~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          10 DFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             HHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            3566666777776   489999999999999998877553

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.32  E-value=2.4e-05  Score=60.91  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=22.2

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .|++++|.|++||||||+.+.|+..
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999888654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=7.2e-05  Score=63.12  Aligned_cols=26  Identities=23%  Similarity=0.339  Sum_probs=22.5

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ...-+.|.||+|||||++.+.+++.+
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHh
Confidence            34568899999999999999998865

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.30  E-value=3.9e-05  Score=60.09  Aligned_cols=32  Identities=25%  Similarity=0.210  Sum_probs=25.6

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcccccCCCE
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAK  108 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~  108 (302)
                      +.+++|.|++||||||+.+.|+-.+......+
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~   32 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY   32 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHcCCCe
Confidence            47899999999999999999977665444443

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=5e-05  Score=62.91  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=19.9

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+.|.||+|+||||+++.++-.+
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            37899999999999999987643

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=0.00016  Score=59.04  Aligned_cols=32  Identities=25%  Similarity=0.395  Sum_probs=24.0

Q ss_pred             HHHHHHhCC--EEEEEccCCCCccchhhhhhhcc
Q psy2071          70 FMTLLAQNQ--CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        70 i~~~i~~g~--i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +...+..+.  .+.|.||+|+||||+++.++-.+
T Consensus        24 l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          24 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHH
Confidence            334444444  37899999999999999998653

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=4.1e-05  Score=62.18  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=22.7

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +|.+++|+||+|||||||++.++-..
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999998876543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.19  E-value=1.7e-05  Score=65.39  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=22.7

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcccccCCCE
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAK  108 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~  108 (302)
                      +|.+++++|++|+|||||++.|.+......|.+
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v  128 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI  128 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhccc
Confidence            688999999999999999999988655444544

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.00015  Score=60.82  Aligned_cols=24  Identities=33%  Similarity=0.378  Sum_probs=20.7

Q ss_pred             CEEEEEccCCCCccchhhhhhhcc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .-+.|.||.|||||++++.++...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceeEEecCCCCCchHHHHHHHHHh
Confidence            448899999999999999988753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.17  E-value=0.00027  Score=63.05  Aligned_cols=28  Identities=32%  Similarity=0.407  Sum_probs=24.0

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhccc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      .++.++.|.||+||||||++..++..+.
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            5677999999999999999998877553

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.14  E-value=3.9e-05  Score=59.96  Aligned_cols=24  Identities=17%  Similarity=0.468  Sum_probs=21.0

Q ss_pred             CEEEEEccCCCCccchhhhhhhcc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..++|+|++|||||||.+.|+-.+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999987654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.13  E-value=5e-05  Score=57.79  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=18.9

Q ss_pred             CEEEEEccCCCCccchhhhhhh
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g   99 (302)
                      ++++|.|++||||||+.+.|+.
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999987643

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=8.5e-06  Score=64.81  Aligned_cols=24  Identities=25%  Similarity=0.482  Sum_probs=20.7

Q ss_pred             EEEEEccCCCCccchhhhhhhccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +++|+|+|||||||+|.+|...+.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            778999999999999999976543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.07  E-value=0.00027  Score=59.36  Aligned_cols=46  Identities=17%  Similarity=0.271  Sum_probs=32.4

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEee
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVAC  112 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~  112 (302)
                      +++...=+.+|++++|.|++|+||||++-+++.-.....| .+.+..
T Consensus        25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s   71 (277)
T d1cr2a_          25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM   71 (277)
T ss_dssp             HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEee
Confidence            4554444789999999999999999998887754332344 444443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.07  E-value=6.3e-05  Score=58.45  Aligned_cols=27  Identities=30%  Similarity=0.266  Sum_probs=23.4

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+|-++.|+|++||||||+-+.|+-.+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999998887544

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.05  E-value=0.00011  Score=58.65  Aligned_cols=37  Identities=32%  Similarity=0.486  Sum_probs=29.3

Q ss_pred             HHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee
Q psy2071          72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC  112 (302)
Q Consensus        72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~  112 (302)
                      ..+.++.++.|+||.||||||+.+.|+-.+    |-..+..
T Consensus         3 ~~~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~   39 (194)
T d3adka_           3 EKLKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLST   39 (194)
T ss_dssp             HHHHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEH
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEec
Confidence            357889999999999999999999887543    5555543

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.05  E-value=0.0035  Score=50.10  Aligned_cols=43  Identities=12%  Similarity=0.260  Sum_probs=25.2

Q ss_pred             ccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecC
Q psy2071         170 DPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLD  218 (302)
Q Consensus       170 ~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd  218 (302)
                      ..+..+.++||+||+|.-.+  +    ...+++..........+++|.|
T Consensus       164 ~~~~~~~~lvIiDEaH~~~a--~----~~~~i~~~~~~~~~lgLTATl~  206 (206)
T d2fz4a1         164 EKLGNRFMLLIFDEVHHLPA--E----SYVQIAQMSIAPFRLGLTATFE  206 (206)
T ss_dssp             HHHTTTCSEEEEECSSCCCT--T----THHHHHHTCCCSEEEEEEESCC
T ss_pred             HhhCCcCCEEEEECCeeCCc--H----HHHHHHhccCCCcEEEEecCCC
Confidence            34456899999999986332  1    2233343333333456888754

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.04  E-value=8.2e-05  Score=57.64  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=22.3

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..++.|.|++||||||+.+.|+-.+
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            5789999999999999999988765

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.02  E-value=0.0013  Score=54.15  Aligned_cols=30  Identities=27%  Similarity=0.411  Sum_probs=24.9

Q ss_pred             CEEEEEccCCCCccchhhhhhhcccccCCC
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEYSKSVGA  107 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~~~~~G~  107 (302)
                      ..+.|.||.|+||||+++.++-.+....+.
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~~   73 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKDKTTA   73 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTTSCCC
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhcccCC
Confidence            579999999999999999998776544443

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.99  E-value=8.9e-05  Score=57.14  Aligned_cols=24  Identities=21%  Similarity=0.455  Sum_probs=20.8

Q ss_pred             CEEEEEccCCCCccchhhhhhhcc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+++|.|++||||||+.+.|+..+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999887654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.98  E-value=9.1e-05  Score=57.43  Aligned_cols=26  Identities=27%  Similarity=0.442  Sum_probs=22.0

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++-.++|.|++||||||+.+.|+-.+
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999987543

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.96  E-value=9.6e-05  Score=58.44  Aligned_cols=24  Identities=29%  Similarity=0.248  Sum_probs=20.9

Q ss_pred             EEEEEccCCCCccchhhhhhhccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      ++||.|++||||||+.+.|.-.+.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            688999999999999999876554

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.0056  Score=49.19  Aligned_cols=178  Identities=13%  Similarity=0.116  Sum_probs=80.9

Q ss_pred             CCCCCCChhhHHHHHhh-cCCChhHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeecCchh
Q psy2071          42 FTGYPYTPRYHELHRKR-ITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACTQPRR  117 (302)
Q Consensus        42 ~~~~~~~~~~~~l~~~r-~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~~~~~  117 (302)
                      |..+.......+..+.. ..-|. .+.....-.+-.|+-+.+..|+|||||.-  ++.+..+..-..| .+.+..  +.+
T Consensus        12 F~~l~l~~~l~~~L~~~g~~~pt-~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~~~lil~--pt~   88 (212)
T d1qdea_          12 FDDMELDENLLRGVFGYGFEEPS-AIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA--PTR   88 (212)
T ss_dssp             GGGGTCCHHHHHHHHHHTCCSCC-HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEEC--SSH
T ss_pred             hhhCCCCHHHHHHHHHCCCCCCC-HHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhccCCCcceEEEc--ccH
Confidence            33334455555444322 22222 22333344466888899999999999973  5555544332223 222222  222


Q ss_pred             hhHHHHHHHhhhhhccccccceeeeeee-----cCCCCccccccccCHHHHHHHhccc-cCCCCCcEEEEcCCCCCCcch
Q psy2071         118 VAAMSVAQRVSEEMDCQLGQEVGYSIRF-----EDCSSPKTVLKYMTDGMLLREGMSD-PMLENYQVILLDEAHERTLAT  191 (302)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~lS~G~~qr~~la~-al~~~p~lliLDE~~~p~~~l  191 (302)
                      ..+......+.. ........+......     ......+..+-.-+.|....+.... ..+.+.+++++||||   .-+
T Consensus        89 el~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad---~ll  164 (212)
T d1qdea_          89 ELALQIQKVVMA-LAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD---EML  164 (212)
T ss_dssp             HHHHHHHHHHHH-HTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH---HHH
T ss_pred             HHhhhhhhhhcc-cccccccceeeEeeccchhHHHHHhcCCcEEEECCCccccccccCceecCcceEEeehhhh---hhc
Confidence            222222221111 110000000000000     0000011112223556655544333 357889999999953   233


Q ss_pred             HHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhcc
Q psy2071         192 DILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       192 D~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d  227 (302)
                      |... ..+.++++..+. ...++++||-.- .+.+++.
T Consensus       165 d~~f~~~v~~I~~~~~~~~Q~vl~SAT~~~-~v~~l~~  201 (212)
T d1qdea_         165 SSGFKEQIYQIFTLLPPTTQVVLLSATMPN-DVLEVTT  201 (212)
T ss_dssp             HTTCHHHHHHHHHHSCTTCEEEEEESSCCH-HHHHHHH
T ss_pred             ccchHHHHHHHHHhCCCCCeEEEEEeeCCH-HHHHHHH
Confidence            3222 456666665543 346667777643 3444443

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.0012  Score=52.95  Aligned_cols=58  Identities=17%  Similarity=0.239  Sum_probs=33.7

Q ss_pred             cCHHHHHHHhc-cccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCC-cEEEEEEecC
Q psy2071         158 MTDGMLLREGM-SDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADL-KLVIMSATLD  218 (302)
Q Consensus       158 lS~G~~qr~~l-a~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~-~~~ii~~thd  218 (302)
                      .|.|-..+..- ....+.+-+.+++|||+.   -+|... ..+..+++..+.. ..++++||-.
T Consensus       125 ~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~---l~~~~f~~~v~~I~~~l~~~~Q~il~SATl~  185 (206)
T d1s2ma1         125 GTPGRVLDLASRKVADLSDCSLFIMDEADK---MLSRDFKTIIEQILSFLPPTHQSLLFSATFP  185 (206)
T ss_dssp             ECHHHHHHHHHTTCSCCTTCCEEEEESHHH---HSSHHHHHHHHHHHTTSCSSCEEEEEESCCC
T ss_pred             ECCcccccccccceeecccceEEEeechhh---hhhhhhHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence            45565544332 334578899999999532   233222 5667777665543 4566677753

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.89  E-value=0.00011  Score=56.70  Aligned_cols=22  Identities=36%  Similarity=0.456  Sum_probs=18.7

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++|+|++||||||+.+.|+-.
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3679999999999999888643

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.87  E-value=0.00013  Score=59.82  Aligned_cols=22  Identities=41%  Similarity=0.551  Sum_probs=19.7

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      |++|+|+.|||||||++.|...
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            6899999999999999998754

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00012  Score=55.70  Aligned_cols=23  Identities=39%  Similarity=0.466  Sum_probs=19.6

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+.|+|++||||||+-+.|+-.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57889999999999999887543

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=0.00012  Score=58.07  Aligned_cols=23  Identities=39%  Similarity=0.691  Sum_probs=19.5

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      -++|+||+|||||||++.++-..
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHHHhC
Confidence            37899999999999999886543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.85  E-value=0.00014  Score=57.95  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=20.4

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++|+|++|+|||||++.|+|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4999999999999999999874

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.84  E-value=0.00014  Score=56.57  Aligned_cols=22  Identities=23%  Similarity=0.451  Sum_probs=19.7

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++|+|+.|+|||||++.|+|.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999874

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.83  E-value=0.0062  Score=48.46  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=24.4

Q ss_pred             HHHHHHHHhCCEEEEEccCCCCccch--hhhhhhccc
Q psy2071          68 TEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYS  102 (302)
Q Consensus        68 ~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~  102 (302)
                      ......+-+|+-+.+..|+|||||.-  ++++.....
T Consensus        29 ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~   65 (209)
T d1q0ua_          29 ERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP   65 (209)
T ss_dssp             HHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHCCCCeEeecccccccceeeeeeecccccc
Confidence            33344566788899999999999983  455544443

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.012  Score=47.47  Aligned_cols=179  Identities=13%  Similarity=0.098  Sum_probs=79.7

Q ss_pred             CCCCCCChhhHHHHHhh-cCCChhHHHHHHHHHHHhCCEEEEEccCCCCccc--hhhhhhhcccccCCC-EEEeecCchh
Q psy2071          42 FTGYPYTPRYHELHRKR-ITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTT--QIPQWCVEYSKSVGA-KAVACTQPRR  117 (302)
Q Consensus        42 ~~~~~~~~~~~~l~~~r-~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKST--ll~~i~g~~~~~~G~-~~i~~~~~~~  117 (302)
                      |.++...++..+..... ..-|. .+.....-.+-.|.-+.+..++|||||.  +++.+..+.....+. ..+.  .|.+
T Consensus        14 F~~l~L~~~l~~~L~~~g~~~pt-~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~~~~~~~alil--~Pt~   90 (218)
T d2g9na1          14 FDDMNLSESLLRGIYAYGFEKPS-AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVL--APTR   90 (218)
T ss_dssp             GGGSCCCHHHHHHHHHHTCCSCC-HHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEE--CSSH
T ss_pred             HHHCCCCHHHHHHHHHCCCCCCC-HHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheecccccCccEEEE--cccc
Confidence            44444555555544322 22222 1233333445678889999999999997  455555544333332 2222  2222


Q ss_pred             hhHHHHHH---HhhhhhccccccceeeeeeecC--CCC-ccccccccCHHHHHHHhc-cccCCCCCcEEEEcCCCCCCcc
Q psy2071         118 VAAMSVAQ---RVSEEMDCQLGQEVGYSIRFED--CSS-PKTVLKYMTDGMLLREGM-SDPMLENYQVILLDEAHERTLA  190 (302)
Q Consensus       118 ~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~--~~~-~~~~~~~lS~G~~qr~~l-a~al~~~p~lliLDE~~~p~~~  190 (302)
                      .-+.....   ..............+.......  ... ....+-.-+.|......- ....+.+.+++++|||+.   -
T Consensus        91 eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD~---l  167 (218)
T d2g9na1          91 ELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE---M  167 (218)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHH---H
T ss_pred             hhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeecch---h
Confidence            22222211   1111111110000000000000  000 011122345565444332 335677899999999532   2


Q ss_pred             hHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhcc
Q psy2071         191 TDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFD  227 (302)
Q Consensus       191 lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d  227 (302)
                      +|... ..+.++++...+ ...++++||-.- .+.++++
T Consensus       168 l~~~f~~~~~~Il~~~~~~~Q~il~SAT~~~-~v~~~~~  205 (218)
T d2g9na1         168 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPS-DVLEVTK  205 (218)
T ss_dssp             HHTTCHHHHHHHHHHSCTTCEEEEEESCCCH-HHHHHHH
T ss_pred             hcCchHHHHHHHHHhCCCCCeEEEEEecCCH-HHHHHHH
Confidence            33212 455666665544 345566777643 3444443

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.00016  Score=64.12  Aligned_cols=25  Identities=20%  Similarity=0.448  Sum_probs=21.5

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhh
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g   99 (302)
                      ..+.+.+|+|+|||||||+|.+|+-
T Consensus        23 ~~~~l~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          23 GESNFTSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             TTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3466999999999999999999853

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00019  Score=56.70  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             CEEEEEccCCCCccchhhhhhhc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      ..++|+||+|+|||||++.|+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999987753

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.76  E-value=0.00017  Score=57.26  Aligned_cols=31  Identities=26%  Similarity=0.458  Sum_probs=24.0

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcccccCCCEEEe
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA  111 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~  111 (302)
                      ..+++|+||.||||||+.+.|+-.+    |-..+.
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~   36 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS   36 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH----CCceEc
Confidence            3589999999999999998887543    445554

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.002  Score=52.78  Aligned_cols=36  Identities=19%  Similarity=0.213  Sum_probs=26.3

Q ss_pred             HHHHHHHHHhCCE---EEEEccCCCCccchhhhhhhccc
Q psy2071          67 RTEFMTLLAQNQC---IVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        67 ~~~i~~~i~~g~i---~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      .+.+...+..+.+   +.|.||+|+||||+.+.++-.+.
T Consensus        21 ~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          21 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             HHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            3444555666653   77889999999999998876554

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.74  E-value=0.00015  Score=56.52  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=20.2

Q ss_pred             CEEEEEccCCCCccchhhhhhhc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      --++|+|++|||||||++.+.+-
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35889999999999999998764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00024  Score=61.61  Aligned_cols=39  Identities=21%  Similarity=0.269  Sum_probs=28.9

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP  115 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~  115 (302)
                      .-+++|+|++|+|||||+..++..+....-.+.+...+|
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDp   92 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   92 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCC
Confidence            457999999999999999999876654333555555444

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.73  E-value=0.00016  Score=56.72  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=21.3

Q ss_pred             EEEEEccCCCCccchhhhhhhccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +++|.|++||||||+.+.|+..+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            678899999999999999987664

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.73  E-value=0.00017  Score=56.52  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=20.0

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|++|+|||||++.|+|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999874

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.00019  Score=57.17  Aligned_cols=32  Identities=28%  Similarity=0.443  Sum_probs=25.2

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcccccCCCEEEe
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA  111 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~  111 (302)
                      +..+++|+||.||||||+.+.|+-.+    |-..|.
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is   38 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS   38 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence            44579999999999999999987644    545554

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.71  E-value=0.00019  Score=57.23  Aligned_cols=21  Identities=38%  Similarity=0.656  Sum_probs=18.5

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+||+||||||+.+.++-.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            689999999999999987654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.69  E-value=0.0002  Score=54.39  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=19.4

Q ss_pred             EEEEccCCCCccchhhhhhhcc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++|+|+.|||||||++.+++..
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6899999999999999987643

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00023  Score=57.47  Aligned_cols=23  Identities=26%  Similarity=0.247  Sum_probs=19.7

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++||.|++||||||+.+.|.-.+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999998875544

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.66  E-value=0.00022  Score=54.58  Aligned_cols=21  Identities=38%  Similarity=0.564  Sum_probs=19.3

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|.+|||||||++.+++-
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00021  Score=54.66  Aligned_cols=22  Identities=18%  Similarity=0.380  Sum_probs=20.0

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|+.|+|||||++.++|.
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999875

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0064  Score=48.55  Aligned_cols=150  Identities=18%  Similarity=0.183  Sum_probs=68.9

Q ss_pred             HHHHHHhCCEEEEEccCCCCccc--hhhhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeec
Q psy2071          70 FMTLLAQNQCIVLVGETGSGKTT--QIPQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFE  146 (302)
Q Consensus        70 i~~~i~~g~i~~liG~nGsGKST--ll~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  146 (302)
                      ..-.+-+|.-+.+..|+|||||.  +++.+........+ ...+.  .|.+.-+..............  ..+.......
T Consensus        33 aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil--~pt~el~~q~~~~~~~~~~~~--~~~~~~~~~g  108 (206)
T d1veca_          33 SIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVI--VPTRELALQVSQICIQVSKHM--GGAKVMATTG  108 (206)
T ss_dssp             HHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEE--CSCHHHHHHHHHHHHHHTTTS--SSCCEEEECS
T ss_pred             HHHHHHcCCCEEeeccCccccccccccchhhcccccccCcceEEE--eecchhhHHHHHHHHHHhhcc--cCcccccccC
Confidence            34456688889999999999997  45655443322222 22222  222222222211111111000  0111111111


Q ss_pred             CCC--------CccccccccCHHHHHHHhc-cccCCCCCcEEEEcCCCCCCcchHHH-HHHHHHHHHHcCC-CcEEEEEE
Q psy2071         147 DCS--------SPKTVLKYMTDGMLLREGM-SDPMLENYQVILLDEAHERTLATDIL-MGVLKEVIKQRAD-LKLVIMSA  215 (302)
Q Consensus       147 ~~~--------~~~~~~~~lS~G~~qr~~l-a~al~~~p~lliLDE~~~p~~~lD~~-~~~l~~ll~~~~~-~~~~ii~~  215 (302)
                      ...        .....+-.-+.|....... ....+.+-+++++|||+.   -+|.. ...+..+++.... ...++++|
T Consensus       109 ~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~---ll~~~f~~~i~~I~~~~~~~~Q~~l~SA  185 (206)
T d1veca_         109 GTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK---LLSQDFVQIMEDIILTLPKNRQILLYSA  185 (206)
T ss_dssp             SSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH---HTSTTTHHHHHHHHHHSCTTCEEEEEES
T ss_pred             CccHHHHHHHHHhccCeEEeCCccccccccchhccccccceEEEecccc---ccccchHHHHHHHHHhCCCCCEEEEEEe
Confidence            100        0011122245565544332 233467899999999542   12211 2456666665543 35667787


Q ss_pred             ecCHHHHHhhcc
Q psy2071         216 TLDAGKFQQYFD  227 (302)
Q Consensus       216 thd~~~~~~~~d  227 (302)
                      |-. +.+.++++
T Consensus       186 T~~-~~v~~l~~  196 (206)
T d1veca_         186 TFP-LSVQKFMN  196 (206)
T ss_dssp             CCC-HHHHHHHH
T ss_pred             cCC-HHHHHHHH
Confidence            875 33444443

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.65  E-value=0.00019  Score=56.52  Aligned_cols=21  Identities=29%  Similarity=0.316  Sum_probs=19.3

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      |+|+|++++|||||++.|+|.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.00025  Score=55.29  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=20.0

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      +|+|+|.+|+|||||++.|+|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999874

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.00024  Score=56.73  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=20.4

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++|+|++|||||||++.|++-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999874

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00024  Score=56.32  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=20.0

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +++|+||.||||||+.+.|+-.+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999887543

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.63  E-value=0.00026  Score=55.44  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=20.6

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      +++|+|.+|+|||||++.++|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999875

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.00027  Score=55.41  Aligned_cols=24  Identities=33%  Similarity=0.493  Sum_probs=20.5

Q ss_pred             HhCCEEEEEccCCCCccchhhhhh
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWC   98 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~   98 (302)
                      +...++.++|++||||||+.+.++
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999988764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.0034  Score=54.78  Aligned_cols=22  Identities=32%  Similarity=0.563  Sum_probs=18.9

Q ss_pred             hCCEEEEEccCCCCccchhhhh
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQW   97 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i   97 (302)
                      .+.+++|.|+.|+||||++..+
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHHH
Confidence            5779999999999999987544

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00026  Score=53.68  Aligned_cols=21  Identities=24%  Similarity=0.392  Sum_probs=19.1

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|++|+|||||++.+.+-
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999874

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00024  Score=56.53  Aligned_cols=34  Identities=18%  Similarity=0.217  Sum_probs=26.6

Q ss_pred             HHHHHH-HHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071          67 RTEFMT-LLAQNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        67 ~~~i~~-~i~~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++.+.- =+.+|+++.|.||+||||||+.-+++..
T Consensus        12 LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          12 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            344332 3678999999999999999998877653

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00013  Score=57.55  Aligned_cols=27  Identities=26%  Similarity=0.201  Sum_probs=22.5

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +|-++.|+|++||||||+-+.|+-.+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            466888999999999999998875543

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.54  E-value=0.00026  Score=56.01  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=19.2

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+||.||||||+.+.|+--+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999998876443

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.51  E-value=0.00033  Score=54.69  Aligned_cols=22  Identities=41%  Similarity=0.661  Sum_probs=19.1

Q ss_pred             EEEEccCCCCccchhhhhhhcc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++|+||.||||||+.+.|+-.+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999886544

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.51  E-value=0.00032  Score=58.30  Aligned_cols=32  Identities=25%  Similarity=0.260  Sum_probs=24.9

Q ss_pred             EEEEEccCCCCccchhhhhhhcccccCCCEEEee
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC  112 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~  112 (302)
                      .+.|.||+||||||+.+.|++.+.  .+.+.+++
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~   65 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   65 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh--cceEEEec
Confidence            588999999999999999998763  23445543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.47  E-value=0.00034  Score=54.92  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.9

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|.+|+|||||++.++|.
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999874

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.01  Score=47.38  Aligned_cols=146  Identities=17%  Similarity=0.178  Sum_probs=66.7

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccc--hhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTT--QIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR  144 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKST--ll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  144 (302)
                      .....-.+-+|+-+.+..|+|||||.  +++++..... ..+........|.+.-+..+...+... .... ..+.....
T Consensus        28 Q~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~-~~~~~~~lil~PtreL~~qi~~~~~~~-~~~~-~~~~~~~~  104 (207)
T d1t6na_          28 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-VTGQVSVLVMCHTRELAFQISKEYERF-SKYM-PNVKVAVF  104 (207)
T ss_dssp             HHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC-CTTCCCEEEECSCHHHHHHHHHHHHHH-TTTS-TTCCEEEE
T ss_pred             HHHHHHHHHcCCCeEEEeccccccccccccceeeeecc-cCCCceEEEEeccchhhHHHHHHHHHH-HhhC-CCceeEEE
Confidence            33344456688889999999999997  3555544332 222221112223332222222222111 1110 01111111


Q ss_pred             ecCCCCc---------cccccccCHHHHHHHhcc-ccCCCCCcEEEEcCCCCCCcchHH-HH-HHHHHHHHHcCC-CcEE
Q psy2071         145 FEDCSSP---------KTVLKYMTDGMLLREGMS-DPMLENYQVILLDEAHERTLATDI-LM-GVLKEVIKQRAD-LKLV  211 (302)
Q Consensus       145 ~~~~~~~---------~~~~~~lS~G~~qr~~la-~al~~~p~lliLDE~~~p~~~lD~-~~-~~l~~ll~~~~~-~~~~  211 (302)
                      .......         ...+-.-+.|-.....-. ...+.+-+++++|||+.   -+|. .. ..+..+++.... ..++
T Consensus       105 ~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~---ll~~~~~~~~i~~I~~~~~~~~Q~i  181 (207)
T d1t6na_         105 FGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK---MLEQLDMRRDVQEIFRMTPHEKQVM  181 (207)
T ss_dssp             SCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHH---HHSSHHHHHHHHHHHHTSCSSSEEE
T ss_pred             eccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhh---hhhcCCcHHHHHHHHHhCCCCCEEE
Confidence            1111100         001112355544443322 22468899999999532   2331 12 445666665543 3566


Q ss_pred             EEEEecC
Q psy2071         212 IMSATLD  218 (302)
Q Consensus       212 ii~~thd  218 (302)
                      +++||-.
T Consensus       182 l~SAT~~  188 (207)
T d1t6na_         182 MFSATLS  188 (207)
T ss_dssp             EEESCCC
T ss_pred             EEeeeCC
Confidence            7788864

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.47  E-value=0.00043  Score=53.24  Aligned_cols=21  Identities=29%  Similarity=0.528  Sum_probs=19.2

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|+.|||||||++.+.+.
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            789999999999999998774

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.00031  Score=54.72  Aligned_cols=22  Identities=14%  Similarity=0.382  Sum_probs=20.1

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|.+++|||||++.|.+.
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999774

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.45  E-value=0.00025  Score=55.60  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=19.6

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|.+|+|||||++.|+|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999874

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.45  E-value=0.00038  Score=54.65  Aligned_cols=23  Identities=43%  Similarity=0.609  Sum_probs=19.6

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+||.||||||+.+.|+-.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999887544

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.44  E-value=0.00034  Score=54.35  Aligned_cols=24  Identities=29%  Similarity=0.346  Sum_probs=19.6

Q ss_pred             CEEEEEccCCCCccchhhhhhhcc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +.+.|+|++||||||+-+.++-.+
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh
Confidence            346789999999999999886443

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.44  E-value=0.00038  Score=54.99  Aligned_cols=25  Identities=36%  Similarity=0.557  Sum_probs=20.8

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      +|=-++|+||.||||||+-+.|+-.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHH
Confidence            4556789999999999999988743

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.41  E-value=0.00048  Score=54.59  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=21.1

Q ss_pred             CEEEEEccCCCCccchhhhhhhcc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      -+++|-|+.||||||+++.|...+
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            379999999999999999987654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.00043  Score=54.11  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=18.7

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++|+||.||||||+.+.|+-.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999888643

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.36  E-value=0.00043  Score=53.43  Aligned_cols=22  Identities=36%  Similarity=0.524  Sum_probs=19.3

Q ss_pred             EEEEccCCCCccchhhhhhhcc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++|+|++||||||+-+.++-.+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6889999999999999987654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0005  Score=55.29  Aligned_cols=27  Identities=30%  Similarity=0.353  Sum_probs=23.5

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +|.+++|-|+-||||||+++.|.-.+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999999876554

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.29  E-value=0.00024  Score=54.36  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=20.1

Q ss_pred             EEEEccCCCCccchhhhhhhcc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++|+|.+|+|||||++.|+|..
T Consensus         3 I~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998853

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.29  E-value=0.00049  Score=53.30  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=19.7

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++|+|..|||||||++.+.+.
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999998763

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.26  E-value=0.0005  Score=57.40  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=20.9

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|.+|+|||||+|.|+|..
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            58899999999999999999853

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.26  E-value=0.00084  Score=53.39  Aligned_cols=24  Identities=29%  Similarity=0.264  Sum_probs=21.1

Q ss_pred             EEEEEccCCCCccchhhhhhhccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +++++|.+||||||+.+.|+-.+.
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999986554

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.00058  Score=54.90  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.1

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      |++|.||.||||||+-+.|+--+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            88999999999999998886543

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.22  E-value=0.00057  Score=52.77  Aligned_cols=22  Identities=41%  Similarity=0.437  Sum_probs=18.7

Q ss_pred             EEEEccCCCCccchhhhhhhcc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++|+|+.||||||+-+.++-.+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999999999887554

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.19  E-value=0.0006  Score=53.35  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=19.4

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+||.||||||+-+.|+-.+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36899999999999999887544

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.18  E-value=0.0006  Score=53.41  Aligned_cols=30  Identities=37%  Similarity=0.557  Sum_probs=22.7

Q ss_pred             EEEEEccCCCCccchhhhhhhcccccCCCEEEee
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC  112 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~  112 (302)
                      .++|+||.||||||+.+.|+-.+    |-..+..
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~~   33 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLAT   33 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----CCceEec
Confidence            36789999999999999987543    4455543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.17  E-value=0.0011  Score=55.96  Aligned_cols=28  Identities=18%  Similarity=0.382  Sum_probs=20.2

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYSK  103 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~~  103 (302)
                      +.-++||.|++||||||+.+.+.-.+..
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~   30 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRR   30 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            3458999999999999999888766543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.00068  Score=54.75  Aligned_cols=27  Identities=30%  Similarity=0.338  Sum_probs=23.6

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +|-+++|-|+-||||||+.+.|.-.+.
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999998876554

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0008  Score=54.80  Aligned_cols=25  Identities=20%  Similarity=0.155  Sum_probs=22.1

Q ss_pred             CCEEEEEccCCCCccchhhhhhhcc
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +.+++|-|+-|||||||++.|.-.+
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999987654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.08  E-value=0.00076  Score=53.23  Aligned_cols=20  Identities=35%  Similarity=0.425  Sum_probs=17.8

Q ss_pred             EEEEEccCCCCccchhhhhh
Q psy2071          79 CIVLVGETGSGKTTQIPQWC   98 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~   98 (302)
                      ++||.|+.||||||+.+.+.
T Consensus         5 IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999988763

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.08  E-value=0.00084  Score=53.64  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=19.8

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .|+|+|+.|||||||++.+.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999763

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.08  E-value=0.00075  Score=51.86  Aligned_cols=21  Identities=38%  Similarity=0.351  Sum_probs=18.5

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++++|+.|+|||||++.+.+-
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            688999999999999988653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.00076  Score=52.28  Aligned_cols=21  Identities=24%  Similarity=0.745  Sum_probs=18.8

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|+.|+|||||++.+++-
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999998753

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.06  E-value=0.00074  Score=53.53  Aligned_cols=29  Identities=24%  Similarity=0.365  Sum_probs=22.2

Q ss_pred             EEEEEccCCCCccchhhhhhhcccccCCCEEEe
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA  111 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~  111 (302)
                      .++|+||.||||||+-+.|+--+    |-..+.
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~----g~~~is   36 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF----ELKHLS   36 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB----CCEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH----CCeEEc
Confidence            47889999999999998887543    444554

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.06  E-value=0.00082  Score=54.16  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=19.6

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +++|-||.||||||+-+.|+-.+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46788999999999999987654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.00067  Score=55.13  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=26.3

Q ss_pred             HHHHHHH-HHhCCEEEEEccCCCCccchhhhhhh
Q psy2071          67 RTEFMTL-LAQNQCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        67 ~~~i~~~-i~~g~i~~liG~nGsGKSTll~~i~g   99 (302)
                      ++.+..= +.+|.++.|.|++||||||+.-+++.
T Consensus        23 LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          23 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             HHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             HHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            5554433 67999999999999999999877653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.00076  Score=51.92  Aligned_cols=21  Identities=33%  Similarity=0.476  Sum_probs=19.1

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|+.|+|||||++.+++-
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.02  E-value=0.00083  Score=51.93  Aligned_cols=21  Identities=24%  Similarity=0.575  Sum_probs=18.7

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++++|+.|+|||||++.+++-
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999988653

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.02  E-value=0.0014  Score=56.05  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=22.1

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++..+.++||+|||||+|.++++...
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhcc
Confidence            44667899999999999999998754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.01  E-value=0.0013  Score=53.57  Aligned_cols=24  Identities=33%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             EEEEEccCCCCccchhhhhhhccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      .+.+.||+|+||||+.+.++..+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCcHHHHHHHHHhccC
Confidence            488999999999999999876543

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.00095  Score=54.00  Aligned_cols=27  Identities=26%  Similarity=0.310  Sum_probs=23.5

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +|.+++|-|+-||||||+++.|.-.+.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            689999999999999999998875543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.98  E-value=0.0022  Score=56.88  Aligned_cols=30  Identities=27%  Similarity=0.277  Sum_probs=24.4

Q ss_pred             HHHHhCCE-EEEEccCCCCccchhhhhhhcc
Q psy2071          72 TLLAQNQC-IVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        72 ~~i~~g~i-~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..+.+..+ ++|+|.+|+|||||+|.|.|.-
T Consensus        50 ~~~~~~~l~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          50 KEIDSSVLNVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             HHHHHCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             HhcccCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34445554 9999999999999999999854

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.98  E-value=0.0064  Score=50.77  Aligned_cols=41  Identities=20%  Similarity=0.209  Sum_probs=30.3

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ  114 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~  114 (302)
                      ++.|.++-|.||+||||||+.-+++....-..|.+.+..++
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            46788999999999999999877776654344555554443

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.028  Score=45.30  Aligned_cols=177  Identities=13%  Similarity=0.107  Sum_probs=79.6

Q ss_pred             CCCCCCChhhHHHHHhh-cCCChhHHHHHHHHHHHhCCEEEEEccCCCCccc--hhhhhhhcccccCC-CEEEeecCchh
Q psy2071          42 FTGYPYTPRYHELHRKR-ITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTT--QIPQWCVEYSKSVG-AKAVACTQPRR  117 (302)
Q Consensus        42 ~~~~~~~~~~~~l~~~r-~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKST--ll~~i~g~~~~~~G-~~~i~~~~~~~  117 (302)
                      |..+...++..+..... ..-|.- +.....-.+-+|.-+.+..++|||||-  +++++..+.....+ ...+.  .|.+
T Consensus        19 F~~l~L~~~l~~~L~~~g~~~pt~-IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil--~Ptr   95 (222)
T d2j0sa1          19 FDTMGLREDLLRGIYAYGFEKPSA-IQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALIL--APTR   95 (222)
T ss_dssp             GGGGCCCHHHHHHHHHHTCCSCCH-HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEE--CSSH
T ss_pred             HHHCCCCHHHHHHHHHCCCCCCCH-HHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccccccCceeEEe--cchH
Confidence            33444445555433322 222322 223233345578889999999999997  35666554332222 22222  2222


Q ss_pred             hhHHHHHHHhhhhhccccccceeeeeeecCCCC--------ccccccccCHHHHHHHh-ccccCCCCCcEEEEcCCCCCC
Q psy2071         118 VAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSS--------PKTVLKYMTDGMLLREG-MSDPMLENYQVILLDEAHERT  188 (302)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------~~~~~~~lS~G~~qr~~-la~al~~~p~lliLDE~~~p~  188 (302)
                      .-+......+ ..+.....-.+...  ......        ....+-.-+.|...... -..-.+.+-+++++|||+.  
T Consensus        96 eLa~Qi~~~~-~~l~~~~~i~~~~~--~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~--  170 (222)
T d2j0sa1          96 ELAVQIQKGL-LALGDYMNVQCHAC--IGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE--  170 (222)
T ss_dssp             HHHHHHHHHH-HHHTTTTTCCEEEE--CTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH--
T ss_pred             HHHHHHHHHH-HHHhCccceeEEEE--eecccchhhHHHhccCCeEEeCCCCcHHhcccccccccccceeeeecchhH--
Confidence            2222211111 11111101111111  111000        01112224555444332 2233467889999999532  


Q ss_pred             cchHHH-HHHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccC
Q psy2071         189 LATDIL-MGVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDN  228 (302)
Q Consensus       189 ~~lD~~-~~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~  228 (302)
                       -+|.. ...+..+++..+. ...++++||-. +.+.+++.+
T Consensus       171 -ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~-~~v~~l~~~  210 (222)
T d2j0sa1         171 -MLNKGFKEQIYDVYRYLPPATQVVLISATLP-HEILEMTNK  210 (222)
T ss_dssp             -HTSTTTHHHHHHHHTTSCTTCEEEEEESCCC-HHHHTTGGG
T ss_pred             -hhhcCcHHHHHHHHHhCCCCCEEEEEEEeCC-HHHHHHHHH
Confidence             22221 2445666665543 34666788875 345666654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.00091  Score=51.36  Aligned_cols=20  Identities=35%  Similarity=0.800  Sum_probs=18.1

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++|+|+.|+|||||++.+..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.00094  Score=51.92  Aligned_cols=21  Identities=29%  Similarity=0.745  Sum_probs=18.8

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++++|+.|+|||||++.+.+-
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988663

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.93  E-value=0.001  Score=54.60  Aligned_cols=25  Identities=32%  Similarity=0.377  Sum_probs=21.8

Q ss_pred             CEEEEEccCCCCccchhhhhhhccc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      ..+.|.||+|+||||++++++..+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            4699999999999999999987543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.92  E-value=0.00094  Score=52.26  Aligned_cols=22  Identities=23%  Similarity=0.160  Sum_probs=19.9

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++|+|...+|||||++.|++.
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHh
Confidence            3899999999999999999864

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.00095  Score=51.62  Aligned_cols=20  Identities=35%  Similarity=0.542  Sum_probs=18.4

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++|+|.+|||||||++.+++
T Consensus         8 i~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999998865

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.91  E-value=0.0011  Score=54.66  Aligned_cols=25  Identities=20%  Similarity=0.235  Sum_probs=21.8

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .+.+++|.||.|+|||||++.++-.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence            5679999999999999999987643

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.90  E-value=0.00092  Score=51.78  Aligned_cols=20  Identities=40%  Similarity=0.564  Sum_probs=18.5

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++++|+.|+|||||++.+.+
T Consensus        19 I~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          19 ILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEESTTSSHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            88999999999999999865

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.90  E-value=0.0018  Score=49.68  Aligned_cols=27  Identities=26%  Similarity=0.287  Sum_probs=23.9

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++|.++.|.|+=||||||+.+.++--+
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            678999999999999999999887544

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.89  E-value=0.0018  Score=55.84  Aligned_cols=24  Identities=25%  Similarity=0.270  Sum_probs=20.8

Q ss_pred             CEEEEEccCCCCccchhhhhhhcc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      -+++|.|+.|+|||||+..++..+
T Consensus        52 ~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEeeeCCCCCCHHHHHHHHHHHH
Confidence            469999999999999999987543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.001  Score=51.18  Aligned_cols=21  Identities=29%  Similarity=0.721  Sum_probs=18.8

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++++|.+|+|||||++.++.-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988753

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0011  Score=51.24  Aligned_cols=20  Identities=20%  Similarity=0.527  Sum_probs=18.2

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++|+|..|+|||||++.+++
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999998875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.85  E-value=0.001  Score=54.01  Aligned_cols=34  Identities=29%  Similarity=0.342  Sum_probs=27.0

Q ss_pred             HHHHHHHH-HHhCCEEEEEccCCCCccchhhhhhh
Q psy2071          66 YRTEFMTL-LAQNQCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        66 ~~~~i~~~-i~~g~i~~liG~nGsGKSTll~~i~g   99 (302)
                      -++++..- +..|+++.|.|++|+||||+.-+++.
T Consensus        22 ~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          22 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            35554433 77899999999999999999877764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.85  E-value=0.0011  Score=53.06  Aligned_cols=19  Identities=42%  Similarity=0.525  Sum_probs=17.3

Q ss_pred             EEEEEccCCCCccchhhhh
Q psy2071          79 CIVLVGETGSGKTTQIPQW   97 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i   97 (302)
                      ++||+|+.||||||..+.+
T Consensus         4 iIgITG~igSGKStv~~~l   22 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLF   22 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999998866

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0011  Score=51.02  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCccchhhhhhh
Q psy2071          79 CIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g   99 (302)
                      -++|+|+.|+|||||++.+++
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999865

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.83  E-value=0.0051  Score=51.76  Aligned_cols=47  Identities=15%  Similarity=0.172  Sum_probs=27.5

Q ss_pred             HhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCc-EEEEEEecC
Q psy2071         166 EGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLK-LVIMSATLD  218 (302)
Q Consensus       166 ~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~-~~ii~~thd  218 (302)
                      ......+..+.++||+||+|.-.+      ..+..++....... ..-+++|.+
T Consensus       216 ~~~~~~~~~~f~~VIvDEaH~~~a------~~~~~il~~~~~~~~rlGlTaT~~  263 (282)
T d1rifa_         216 VKQPKEWFSQFGMMMNDECHLATG------KSISSIISGLNNCMFKFGLSGSLR  263 (282)
T ss_dssp             TTSCGGGGGGEEEEEEETGGGCCH------HHHHHHTTTCTTCCEEEEECSSCC
T ss_pred             hhhcccccCCCCEEEEECCCCCCc------hhHHHHHHhccCCCeEEEEEeecC
Confidence            344556777899999999996432      12334444333222 355777753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.78  E-value=0.0009  Score=54.78  Aligned_cols=32  Identities=22%  Similarity=0.265  Sum_probs=25.2

Q ss_pred             HHHHHHH-HHhCCEEEEEccCCCCccchhhhhh
Q psy2071          67 RTEFMTL-LAQNQCIVLVGETGSGKTTQIPQWC   98 (302)
Q Consensus        67 ~~~i~~~-i~~g~i~~liG~nGsGKSTll~~i~   98 (302)
                      ++.+..= +.+|+++.|.|++||||||+.-+++
T Consensus        25 LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          25 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             HHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence            4443333 7889999999999999999977664

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0012  Score=51.11  Aligned_cols=21  Identities=29%  Similarity=0.627  Sum_probs=18.5

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|+.|||||||++.+++-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            689999999999999987653

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.74  E-value=0.0013  Score=51.52  Aligned_cols=20  Identities=30%  Similarity=0.760  Sum_probs=18.3

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++|+|..|||||||++.+++
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0013  Score=50.58  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=18.9

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|+.|+|||||++.+++-
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.73  E-value=0.0024  Score=52.05  Aligned_cols=23  Identities=35%  Similarity=0.410  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+.+.||+|+||||+.++++..+
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999987654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.72  E-value=0.0011  Score=51.78  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++++|++|+|||||++.+.+-
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999988643

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0013  Score=50.35  Aligned_cols=21  Identities=33%  Similarity=0.662  Sum_probs=18.8

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|..|||||||++.+.+-
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998753

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.71  E-value=0.0015  Score=51.10  Aligned_cols=27  Identities=30%  Similarity=0.441  Sum_probs=23.8

Q ss_pred             EEEEccCCCCccchhhhhhhcccccCC
Q psy2071          80 IVLVGETGSGKTTQIPQWCVEYSKSVG  106 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~~~~~~G  106 (302)
                      ++|+|..|+|||||++.+.....|+.|
T Consensus         5 ivllG~~~vGKTsl~~r~~~~~~~t~~   31 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKIIHEAGTG   31 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence            689999999999999998877777777

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0013  Score=51.51  Aligned_cols=20  Identities=30%  Similarity=0.596  Sum_probs=18.2

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++|+|+.|+|||||++.+++
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998865

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0024  Score=54.54  Aligned_cols=24  Identities=25%  Similarity=0.253  Sum_probs=21.6

Q ss_pred             EEEEEccCCCCccchhhhhhhccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      ++||.|++||||||+-+.|..++.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHh
Confidence            899999999999999988877664

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.64  E-value=0.0015  Score=50.03  Aligned_cols=20  Identities=30%  Similarity=0.757  Sum_probs=18.3

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++|+|..|+|||||++.++.
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.63  E-value=0.0015  Score=50.25  Aligned_cols=20  Identities=30%  Similarity=0.632  Sum_probs=18.2

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++|+|..|+|||||++.+..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0015  Score=50.49  Aligned_cols=21  Identities=38%  Similarity=0.681  Sum_probs=18.9

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|..|+|||||++.++.-
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998753

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0015  Score=50.74  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=18.5

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|.+|+|||||++.++.-
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999888754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.60  E-value=0.0017  Score=52.56  Aligned_cols=28  Identities=29%  Similarity=0.407  Sum_probs=22.6

Q ss_pred             EEEEEccCCCCccchhhhhh-hcccccCC
Q psy2071          79 CIVLVGETGSGKTTQIPQWC-VEYSKSVG  106 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~-g~~~~~~G  106 (302)
                      -++|+|.+|+|||||++.+. +...|+.|
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            47899999999999999874 44556667

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0015  Score=50.14  Aligned_cols=20  Identities=40%  Similarity=0.777  Sum_probs=18.1

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++|+|..|+|||||++.+++
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998765

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0016  Score=50.21  Aligned_cols=21  Identities=24%  Similarity=0.416  Sum_probs=19.0

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|+.|+|||||++.+.+.
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            689999999999999998764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0015  Score=50.52  Aligned_cols=20  Identities=45%  Similarity=0.730  Sum_probs=17.5

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++++|+.|+|||||++.++.
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999988764

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.57  E-value=0.0015  Score=52.64  Aligned_cols=28  Identities=25%  Similarity=0.182  Sum_probs=23.5

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .=++|-++-|.|.+||||||+-+.|.-.
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3367889999999999999999887643

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0016  Score=49.96  Aligned_cols=21  Identities=24%  Similarity=0.613  Sum_probs=18.8

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|..|+|||||++.+++-
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0019  Score=49.92  Aligned_cols=20  Identities=25%  Similarity=0.737  Sum_probs=18.3

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++|+|++|+|||||++.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999988765

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.0018  Score=52.03  Aligned_cols=20  Identities=35%  Similarity=0.577  Sum_probs=18.0

Q ss_pred             EEEEEccCCCCccchhhhhh
Q psy2071          79 CIVLVGETGSGKTTQIPQWC   98 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~   98 (302)
                      ++||+|..||||||..+.+.
T Consensus         5 iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            78999999999999998763

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.52  E-value=0.021  Score=47.59  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=19.9

Q ss_pred             CCEEEEEccCCCCccchhhhhhh
Q psy2071          77 NQCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll~~i~g   99 (302)
                      ..+++|.|.-|.|||||.+.+.-
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999988753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0017  Score=50.00  Aligned_cols=20  Identities=20%  Similarity=0.571  Sum_probs=18.5

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++|+|+.|+|||||++.++.
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999999875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0017  Score=50.23  Aligned_cols=20  Identities=35%  Similarity=0.542  Sum_probs=18.3

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++|+|..|+|||||++.++.
T Consensus         9 v~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998765

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.49  E-value=0.002  Score=49.86  Aligned_cols=20  Identities=30%  Similarity=0.679  Sum_probs=8.4

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++|+|..|+|||||++.+++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.44  E-value=0.002  Score=51.18  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=20.6

Q ss_pred             EEEEEccCCCCccchhhhhhhccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +++|-|.-|||||||++.|...+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999876543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0015  Score=53.24  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=23.4

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhh
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g   99 (302)
                      |.+|.++.|.|++||||||+.-+++.
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            67999999999999999999877764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0018  Score=50.06  Aligned_cols=22  Identities=36%  Similarity=0.527  Sum_probs=19.4

Q ss_pred             EEEEccCCCCccchhhhhhhcc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++|+|..|+|||||++.+++..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCc
Confidence            7899999999999999987643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.002  Score=49.67  Aligned_cols=21  Identities=29%  Similarity=0.601  Sum_probs=18.7

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++++|..|+|||||+..+..-
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999998753

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.41  E-value=0.0019  Score=51.01  Aligned_cols=20  Identities=25%  Similarity=0.639  Sum_probs=18.4

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++|+|+.|||||||++.+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999998875

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.40  E-value=0.0035  Score=53.90  Aligned_cols=28  Identities=18%  Similarity=0.376  Sum_probs=24.4

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhcccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYSK  103 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~~  103 (302)
                      .|.-+.|+|+.|+||||+.+.+.+++++
T Consensus        27 ~~h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          27 GIGGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             GGCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CCCeEEEECCCCccHHHHHHHHHHhCCC
Confidence            4456899999999999999999998865

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.002  Score=50.29  Aligned_cols=20  Identities=30%  Similarity=0.491  Sum_probs=18.4

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++|+|..|+|||||++.++.
T Consensus         8 ivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999998865

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.38  E-value=0.002  Score=49.52  Aligned_cols=21  Identities=29%  Similarity=0.620  Sum_probs=18.6

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|..|+|||||++.+.+-
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999987653

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.002  Score=49.77  Aligned_cols=20  Identities=25%  Similarity=0.635  Sum_probs=18.4

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++|+|..|+|||||++.+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.36  E-value=0.0018  Score=50.02  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -++++|+.|+|||||++.++.-
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999998753

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.21  E-value=0.0027  Score=51.67  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=21.0

Q ss_pred             CEEEEEccCCCCccchhhhhhhc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -+++|+|..+||||||++.|++.
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhh
Confidence            46999999999999999999875

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0025  Score=49.44  Aligned_cols=21  Identities=29%  Similarity=0.716  Sum_probs=18.9

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++++|..|+|||||++.+.+-
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988763

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.18  E-value=0.0026  Score=49.04  Aligned_cols=20  Identities=35%  Similarity=0.606  Sum_probs=18.1

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++++|..|||||||++.+++
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67899999999999998875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.16  E-value=0.0026  Score=48.94  Aligned_cols=20  Identities=30%  Similarity=0.591  Sum_probs=18.2

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++|+|..|+|||||++.++.
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.14  E-value=0.0028  Score=53.50  Aligned_cols=21  Identities=33%  Similarity=0.352  Sum_probs=18.3

Q ss_pred             EEEEEccCCCCccchhhhhhh
Q psy2071          79 CIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g   99 (302)
                      ++||.|+.|||||||...|.-
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHH
Confidence            789999999999999876643

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0028  Score=48.62  Aligned_cols=21  Identities=29%  Similarity=0.525  Sum_probs=18.6

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|..|+|||||++.++.-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999988653

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.07  E-value=0.0042  Score=51.22  Aligned_cols=23  Identities=26%  Similarity=0.162  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++.|.||.|+||||+++.++-.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            35567999999999999987654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0031  Score=48.50  Aligned_cols=20  Identities=35%  Similarity=0.652  Sum_probs=18.2

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++|+|+.|+|||||++.++.
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998765

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.01  E-value=0.0038  Score=56.05  Aligned_cols=34  Identities=26%  Similarity=0.294  Sum_probs=25.9

Q ss_pred             EEEEEccCCCCccchhhhhhhcccccCCCEEEeecC
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ  114 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~  114 (302)
                      .+.++||+|||||-|.+.|+..+.  .-.+.++++.
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~--VPFv~~daT~   84 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLAN--APFIKVEATK   84 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEGGG
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC--CCEEEeecce
Confidence            689999999999999999998652  2245555544

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.99  E-value=0.068  Score=42.03  Aligned_cols=61  Identities=10%  Similarity=0.108  Sum_probs=36.8

Q ss_pred             ccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHH-HHhhccCCCeeee
Q psy2071         170 DPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGK-FQQYFDNAPLMNV  234 (302)
Q Consensus       170 ~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~-~~~~~d~~~~l~i  234 (302)
                      .+...+.+++|+||+|.  ... .....+.+.+++-.. +..++++|++.+. ...+-.||.++.+
T Consensus        74 ~~~~~~~KviIId~ad~--l~~-~aqNaLLK~LEEPp~-~t~fiLit~~~~~ll~TI~SRC~~i~~  135 (198)
T d2gnoa2          74 SPELYTRKYVIVHDCER--MTQ-QAANAFLKALEEPPE-YAVIVLNTRRWHYLLPTIKSRVFRVVV  135 (198)
T ss_dssp             CCSSSSSEEEEETTGGG--BCH-HHHHHTHHHHHSCCT-TEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred             CcccCCCEEEEEeCccc--cch-hhhhHHHHHHhCCCC-CceeeeccCChhhCHHHHhcceEEEeC
Confidence            34567789999999632  222 223455566665444 5666677777653 4455567766663

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0033  Score=52.89  Aligned_cols=24  Identities=17%  Similarity=0.235  Sum_probs=21.1

Q ss_pred             CEEEEEccCCCCccchhhhhhhcc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      -+|+|+||.++|||||++.+.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            378899999999999999998753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.99  E-value=0.021  Score=47.49  Aligned_cols=25  Identities=32%  Similarity=0.420  Sum_probs=20.3

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      ....+.|+||.|+|||+++.-++-.
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHH
Confidence            3357889999999999998776643

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0032  Score=49.00  Aligned_cols=21  Identities=24%  Similarity=0.495  Sum_probs=18.8

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++++|..|+|||||++.+++-
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.97  E-value=0.0031  Score=49.12  Aligned_cols=20  Identities=35%  Similarity=0.607  Sum_probs=17.9

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++++|..|+|||||++.++.
T Consensus         5 ivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999987765

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.93  E-value=0.0032  Score=49.41  Aligned_cols=27  Identities=33%  Similarity=0.450  Sum_probs=20.8

Q ss_pred             EEEEccCCCCccchhhhhhhc--ccccCC
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE--YSKSVG  106 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~--~~~~~G  106 (302)
                      ++|+|..|+|||||++.+...  ..|+.|
T Consensus         5 ivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            689999999999999988432  235555

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0033  Score=49.13  Aligned_cols=20  Identities=30%  Similarity=0.474  Sum_probs=18.1

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++|+|..|+|||||++.++.
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            78999999999999988764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0035  Score=49.24  Aligned_cols=21  Identities=29%  Similarity=0.482  Sum_probs=18.5

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|+.|+|||||++.++.-
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999887653

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.83  E-value=0.0048  Score=53.90  Aligned_cols=37  Identities=16%  Similarity=0.167  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +++.+...++++.++++.||.|+||||+.+.++..+.
T Consensus       143 ~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         143 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            3444455567778999999999999999999988653

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.0055  Score=51.02  Aligned_cols=40  Identities=23%  Similarity=0.155  Sum_probs=28.3

Q ss_pred             HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeec
Q psy2071          74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT  113 (302)
Q Consensus        74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~  113 (302)
                      ++.|.++-|.||+||||||+.-+++....-..|.+.+..+
T Consensus        51 i~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidt   90 (263)
T d1u94a1          51 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   90 (263)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             ccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            4577999999999999999976666554433444444333

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.0049  Score=49.92  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCccchhhhhhh
Q psy2071          79 CIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g   99 (302)
                      ++.|.|.=||||||||+.++-
T Consensus         5 v~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHH
T ss_pred             EEEEeeCCCCCHHHHHHHHHh
Confidence            689999999999999998865

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.0035  Score=52.88  Aligned_cols=37  Identities=14%  Similarity=0.167  Sum_probs=30.6

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK  103 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~  103 (302)
                      .-|...-|..|+-.+|+|+.|+|||||+.+++-....
T Consensus        33 ~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~   69 (289)
T d1xpua3          33 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY   69 (289)
T ss_dssp             HHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             eeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHHhh
Confidence            4566777889999999999999999999888764433

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.005  Score=50.00  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=20.7

Q ss_pred             CEEEEEccCCCCccchhhhhhhcc
Q psy2071          78 QCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+++|-|.-|||||||++.|.-.+
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHH
Confidence            478999999999999999987543

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

Probab=94.26  E-value=0.082  Score=42.77  Aligned_cols=34  Identities=26%  Similarity=0.318  Sum_probs=26.2

Q ss_pred             HHHHHHHHhCCEEEEEccCCCCccc--hhhhhhhcc
Q psy2071          68 TEFMTLLAQNQCIVLVGETGSGKTT--QIPQWCVEY  101 (302)
Q Consensus        68 ~~i~~~i~~g~i~~liG~nGsGKST--ll~~i~g~~  101 (302)
                      ....-.+-+|+-+.+..|+|||||.  +++.+..+.
T Consensus        49 ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~   84 (238)
T d1wrba1          49 KNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLV   84 (238)
T ss_dssp             HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHH
Confidence            3334456689999999999999999  777776554

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.01  Score=48.35  Aligned_cols=30  Identities=20%  Similarity=0.235  Sum_probs=24.5

Q ss_pred             hHHHHHHHHHHHhCC--EEEEEccCCCCccch
Q psy2071          64 FEYRTEFMTLLAQNQ--CIVLVGETGSGKTTQ   93 (302)
Q Consensus        64 ~~~~~~i~~~i~~g~--i~~liG~nGsGKSTl   93 (302)
                      ..+.++|...+..+.  ...|.|.+|||||=.
T Consensus        61 ~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V   92 (233)
T d2eyqa3          61 AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV   92 (233)
T ss_dssp             HHHHHHHHHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred             HHHHHHHHHHHhccCccCeEEEcCCCCCcHHH
Confidence            456778888888776  789999999999965

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.07  E-value=0.0037  Score=52.99  Aligned_cols=22  Identities=32%  Similarity=0.438  Sum_probs=20.6

Q ss_pred             EEEEccCCCCccchhhhhhhcc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++++|.-+|||||||+.|+|.-
T Consensus        27 ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          27 IVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEECSSSSHHHHHHHHHTSC
T ss_pred             EEEEeCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999965

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.06  E-value=0.0067  Score=47.29  Aligned_cols=21  Identities=38%  Similarity=0.504  Sum_probs=18.4

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      ++|+|..|+|||||++.+...
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999988543

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.95  E-value=0.22  Score=39.05  Aligned_cols=44  Identities=25%  Similarity=0.434  Sum_probs=27.1

Q ss_pred             CCCCCcEEEEcCCCCCCcchHHH-HHHHHHHHHHcC-CCcEEEEEEecC
Q psy2071         172 MLENYQVILLDEAHERTLATDIL-MGVLKEVIKQRA-DLKLVIMSATLD  218 (302)
Q Consensus       172 l~~~p~lliLDE~~~p~~~lD~~-~~~l~~ll~~~~-~~~~~ii~~thd  218 (302)
                      .+.+-+++++||+|.   -+|.. ...+.++++..+ +...++++||-.
T Consensus       142 ~~~~l~~lViDEad~---l~~~~~~~~i~~I~~~~~~~~Q~i~~SAT~~  187 (208)
T d1hv8a1         142 NLKNVKYFILDEADE---MLNMGFIKDVEKILNACNKDKRILLFSATMP  187 (208)
T ss_dssp             CTTSCCEEEEETHHH---HHTTTTHHHHHHHHHTSCSSCEEEEECSSCC
T ss_pred             CcccCcEEEEEChHH---hhcCCChHHHHHHHHhCCCCCeEEEEEccCC
Confidence            467889999999753   12211 245666666554 335666777754

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.80  E-value=0.0086  Score=48.58  Aligned_cols=21  Identities=33%  Similarity=0.257  Sum_probs=18.7

Q ss_pred             EEEEEccCCCCccchhhhhhh
Q psy2071          79 CIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g   99 (302)
                      ++||.|+-||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999888743

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.68  E-value=0.012  Score=49.13  Aligned_cols=38  Identities=26%  Similarity=0.253  Sum_probs=28.0

Q ss_pred             HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEE
Q psy2071          73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV  110 (302)
Q Consensus        73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i  110 (302)
                      =++.|.++-|.||+||||||+.-+++.......|.+.+
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vy   93 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAF   93 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEE
Confidence            46789999999999999999976666554434454433

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.65  E-value=0.0086  Score=50.36  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=20.5

Q ss_pred             EEEEccCCCCccchhhhhhhcc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++++|.-+||||||++.|+|.-
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999964

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.43  E-value=0.014  Score=46.71  Aligned_cols=22  Identities=32%  Similarity=0.412  Sum_probs=19.5

Q ss_pred             EEEEccCCCCccchhhhhhhcc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +.|.||+|||||.|+.+++-..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999987654

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.34  E-value=0.018  Score=49.16  Aligned_cols=27  Identities=19%  Similarity=0.304  Sum_probs=21.6

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhccc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVEYS  102 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~~~  102 (302)
                      +..++.+.||+|||||.+.+.+++...
T Consensus       122 ~~g~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         122 ASGMVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             ESEEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHhc
Confidence            334566689999999999999988653

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.23  E-value=0.014  Score=48.75  Aligned_cols=34  Identities=26%  Similarity=0.315  Sum_probs=28.8

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .-|....+-+|+-.+|+|+.|+|||||+..++--
T Consensus        58 aID~l~pigkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          58 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eeeeeccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            4566778889999999999999999998777643

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.20  E-value=0.012  Score=45.73  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=17.8

Q ss_pred             hCCEEEEEccCCCCccchhhhh
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQW   97 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i   97 (302)
                      .|.-+.|.|++|+||||+.-.+
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l   35 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDL   35 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHH
Confidence            4566899999999999986443

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=93.11  E-value=0.1  Score=38.51  Aligned_cols=55  Identities=24%  Similarity=0.250  Sum_probs=30.7

Q ss_pred             HHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHH
Q psy2071         161 GMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKF  222 (302)
Q Consensus       161 G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~  222 (302)
                      ..............++++|++||++=  -. |..... .++   ..+.|+.|+.+..|.+.-
T Consensus        65 ~~~~~~~~~~~~~~~~dvI~IDE~QF--f~-d~i~~~-~~~---~~~~g~~Viv~GLd~Df~  119 (139)
T d2b8ta1          65 PEILNYIMSNSFNDETKVIGIDEVQF--FD-DRICEV-ANI---LAENGFVVIISGLDKNFK  119 (139)
T ss_dssp             HHHHHHHHSTTSCTTCCEEEECSGGG--SC-THHHHH-HHH---HHHTTCEEEEECCSBCTT
T ss_pred             hhhHHHHHhhccccCcCEEEechhhh--cc-hhHHHH-HHH---HHhcCceEEEEEeccccc
Confidence            33333334445667899999999532  11 322222 222   223477888888876543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.05  E-value=0.013  Score=46.01  Aligned_cols=22  Identities=32%  Similarity=0.354  Sum_probs=19.8

Q ss_pred             EEEEccCCCCccchhhhhhhcc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++++|.-.+|||||++.|.|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999998743

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=92.98  E-value=0.014  Score=45.36  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=17.1

Q ss_pred             hCCEEEEEccCCCCccchhhh
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQ   96 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~   96 (302)
                      .|.-+.|.|++|+||||+.-.
T Consensus        13 ~g~gvl~~G~sG~GKStlal~   33 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALE   33 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHH
Confidence            355689999999999998643

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.88  E-value=0.013  Score=49.76  Aligned_cols=21  Identities=29%  Similarity=0.341  Sum_probs=19.1

Q ss_pred             EEEEccCCCCccchhhhhhhc
Q psy2071          80 IVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g~  100 (302)
                      +||+|-.-+|||||++.+.|.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            799999999999999999875

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.78  E-value=0.098  Score=38.79  Aligned_cols=22  Identities=27%  Similarity=0.362  Sum_probs=18.5

Q ss_pred             HhCCEEEEEccCCCCccchhhh
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQ   96 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~   96 (302)
                      +.|.+..|+||=.|||||-|=.
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~   26 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIR   26 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHH
T ss_pred             cceeEEEEEeccccHHHHHHHH
Confidence            3688999999999999996533

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.76  E-value=0.016  Score=49.43  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=20.5

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++.++||+|+|||.|.+.|+-.+
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhhc
Confidence            68899999999999999988654

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.69  E-value=0.015  Score=49.04  Aligned_cols=22  Identities=23%  Similarity=0.167  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -+||+|-..||||||++.+++-
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999875

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.62  E-value=0.019  Score=50.57  Aligned_cols=45  Identities=9%  Similarity=0.160  Sum_probs=29.7

Q ss_pred             CcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhh
Q psy2071         176 YQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQY  225 (302)
Q Consensus       176 p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~  225 (302)
                      |=++++||+|.-. .++    .+.+++...++.|+.++++|.++..+...
T Consensus       277 ~v~l~lDE~~~~~-~~~----~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~~  321 (433)
T d1e9ra_         277 RLWLFIDELASLE-KLA----SLADALTKGRKAGLRVVAGLQSTSQLDDV  321 (433)
T ss_dssp             CEEEEESCGGGSC-BCS----SHHHHHHHCTTTTEEEEEEESCHHHHHHH
T ss_pred             ceEEEechHhhhc-ccH----HHHHHHHHhCCCCceEEEEeccHHHHHHH
Confidence            4468899965321 112    23455666677899999999998776543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.32  E-value=0.019  Score=45.69  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.4

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      .++++|.-++|||||+..|++.
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            3899999999999999998654

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.025  Score=41.79  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=18.2

Q ss_pred             hCCEEEEEccCCCCccchhhhh
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQW   97 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i   97 (302)
                      .|.+..|+||=.|||||.|=..
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~   22 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRR   22 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHH
Confidence            4888999999999999965333

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=92.23  E-value=0.051  Score=51.11  Aligned_cols=90  Identities=20%  Similarity=0.324  Sum_probs=51.9

Q ss_pred             Cccchhhhhhhhhhcccccccccccc-cccCCCCCCCC-CChhhHHHHHh--hcCCC--hhHHHHHHHHH---HHhCCEE
Q psy2071          10 DPYITKKNREERLATVNASVSTSIAS-NLQVNPFTGYP-YTPRYHELHRK--RITLP--VFEYRTEFMTL---LAQNQCI   80 (302)
Q Consensus        10 ~~~~~~k~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~l~~~--r~~lp--~~~~~~~i~~~---i~~g~i~   80 (302)
                      .+.+-...++.|-.  ....|+...+ =+..||+...+ |+..+.+..+.  +..+|  +|.+.+.-...   -...+.+
T Consensus        12 ~e~~vl~~L~~Ry~--~~~iYT~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~iA~~Ay~~l~~~~~~QsI   89 (684)
T d1lkxa_          12 TENAFIENLTMRHK--SDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCV   89 (684)
T ss_dssp             SHHHHHHHHHHHHH--TTCCEEESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEE
T ss_pred             CHHHHHHHHHHHHc--CCCceeeECCEEEEECCCCCCCCCCHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHcCCCeEE
Confidence            33344445555542  3445655443 23468986554 55555444422  23444  45544333222   2467899


Q ss_pred             EEEccCCCCccchhhhhhhcc
Q psy2071          81 VLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        81 ~liG~nGsGKSTll~~i~g~~  101 (302)
                      .|.|++|||||+-.++++-.+
T Consensus        90 iisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          90 IISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             EEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHHHHH
Confidence            999999999999888876544

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=92.12  E-value=0.021  Score=47.43  Aligned_cols=21  Identities=43%  Similarity=0.558  Sum_probs=18.8

Q ss_pred             EEEEEccCCCCccchhhhhhh
Q psy2071          79 CIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g   99 (302)
                      .++|+|..|||||||+.+|+.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            589999999999999998854

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=92.04  E-value=0.022  Score=43.93  Aligned_cols=20  Identities=20%  Similarity=0.444  Sum_probs=16.7

Q ss_pred             hCCEEEEEccCCCCccchhh
Q psy2071          76 QNQCIVLVGETGSGKTTQIP   95 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~   95 (302)
                      .|.-+.|.|++|+||||+.-
T Consensus        14 ~g~gvli~G~sg~GKS~la~   33 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETAL   33 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHH
Confidence            45668999999999999863

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=91.66  E-value=0.023  Score=49.35  Aligned_cols=23  Identities=39%  Similarity=0.523  Sum_probs=19.8

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+.++||||||||-+.+.|+-..
T Consensus        70 niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceeeeCCCCccHHHHHHHHHhhc
Confidence            47889999999999999987653

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.48  E-value=0.096  Score=49.37  Aligned_cols=76  Identities=25%  Similarity=0.390  Sum_probs=44.5

Q ss_pred             ccccccccc-cccCCCCCCCC-CChhhHHHHHh--hcCCC--hhHHHHHHH-HH--HHhCCEEEEEccCCCCccchhhhh
Q psy2071          27 ASVSTSIAS-NLQVNPFTGYP-YTPRYHELHRK--RITLP--VFEYRTEFM-TL--LAQNQCIVLVGETGSGKTTQIPQW   97 (302)
Q Consensus        27 ~~~~~~~~~-~~~~~~~~~~~-~~~~~~~l~~~--r~~lp--~~~~~~~i~-~~--i~~g~i~~liG~nGsGKSTll~~i   97 (302)
                      ...|+.... =+..||+...+ |+..+.+..+.  +..+|  +|.+.+.-. ..  =..++.++|.|++|||||+-.+.+
T Consensus        66 ~~iYT~~G~iLiavNP~k~l~iy~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k~i  145 (712)
T d1d0xa2          66 DLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKV  145 (712)
T ss_dssp             TCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCceeeECCEEEEECCCCCCCCCCHHHHHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCceEEEeCCCCCCHHHHHHHH
Confidence            344444332 23368986654 44555444432  23343  455443322 22  246789999999999999988888


Q ss_pred             hhccc
Q psy2071          98 CVEYS  102 (302)
Q Consensus        98 ~g~~~  102 (302)
                      +-.+.
T Consensus       146 l~yL~  150 (712)
T d1d0xa2         146 IQYLA  150 (712)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.05  E-value=0.014  Score=48.40  Aligned_cols=41  Identities=24%  Similarity=0.309  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHhCC--EEEEEccCCCCccchhhhhhhcccccCC
Q psy2071          65 EYRTEFMTLLAQNQ--CIVLVGETGSGKTTQIPQWCVEYSKSVG  106 (302)
Q Consensus        65 ~~~~~i~~~i~~g~--i~~liG~nGsGKSTll~~i~g~~~~~~G  106 (302)
                      ++.++|...+..+.  ...|.|..|||||-. -+.+.......|
T Consensus        90 ~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~V-a~~a~~~~~~~g  132 (264)
T d1gm5a3          90 RAHQEIRNDMISEKPMNRLLQGDVGSGKTVV-AQLAILDNYEAG  132 (264)
T ss_dssp             HHHHHHHHHHHSSSCCCCEEECCSSSSHHHH-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhccCcceeeeeccccccccHH-HHHHHHHHHhcc
Confidence            35677888887665  678999999999954 333333333444

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=91.04  E-value=0.025  Score=47.18  Aligned_cols=32  Identities=19%  Similarity=0.307  Sum_probs=26.3

Q ss_pred             HHHHHHHHhCCEEEEEccCCCCccchhhhhhh
Q psy2071          68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g   99 (302)
                      -|....|-+|+.++|+|+.|+|||||+..+.-
T Consensus        58 ID~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          58 IDAMIPVGRGQRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             TTTTSCCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred             EeccccccCCceEeeccCCCCChHHHHHHHHh
Confidence            34566788999999999999999999876543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.01  E-value=0.032  Score=46.49  Aligned_cols=21  Identities=24%  Similarity=0.267  Sum_probs=18.8

Q ss_pred             CEEEEEccCCCCccchhhhhh
Q psy2071          78 QCIVLVGETGSGKTTQIPQWC   98 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~   98 (302)
                      ..++|+|..|||||||+..|+
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            368999999999999998885

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=90.97  E-value=0.031  Score=46.48  Aligned_cols=22  Identities=23%  Similarity=0.176  Sum_probs=19.8

Q ss_pred             EEEEEccCCCCccchhhhhhhc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~  100 (302)
                      -+||+|-.-+|||||++.+++-
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999854

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.83  E-value=0.036  Score=43.67  Aligned_cols=25  Identities=32%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             hCCEEEEEccCCCCccchhhhhhhc
Q psy2071          76 QNQCIVLVGETGSGKTTQIPQWCVE  100 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll~~i~g~  100 (302)
                      ....+.|+|+.|.|||+++.-++-.
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHH
Confidence            4457899999999999998776543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.74  E-value=0.033  Score=43.94  Aligned_cols=23  Identities=30%  Similarity=0.331  Sum_probs=20.5

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|.-.+|||||+..|+|..
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhh
Confidence            48999999999999999998754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=90.64  E-value=0.059  Score=46.09  Aligned_cols=26  Identities=31%  Similarity=0.183  Sum_probs=21.5

Q ss_pred             EEEEEccCCCCccchhhhhhhccccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSKS  104 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~~  104 (302)
                      .+.|=|+=||||||+++.+.-.+...
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~   33 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGG   33 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccC
Confidence            37789999999999999998765543

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=90.36  E-value=0.068  Score=45.61  Aligned_cols=25  Identities=32%  Similarity=0.413  Sum_probs=21.0

Q ss_pred             EEEEEccCCCCccchhhhhhhcccc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEYSK  103 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~~~  103 (302)
                      .++|-|+=||||||+++.+.-.+..
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4789999999999999998765543

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=90.08  E-value=0.12  Score=48.70  Aligned_cols=89  Identities=21%  Similarity=0.332  Sum_probs=50.4

Q ss_pred             ccchhhhhhhhhhcccccccccccc-cccCCCCCCCC-CChhhHHHHH--hhcCCC--hhHHHHHHHHH---HHhCCEEE
Q psy2071          11 PYITKKNREERLATVNASVSTSIAS-NLQVNPFTGYP-YTPRYHELHR--KRITLP--VFEYRTEFMTL---LAQNQCIV   81 (302)
Q Consensus        11 ~~~~~k~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~l~~--~r~~lp--~~~~~~~i~~~---i~~g~i~~   81 (302)
                      +.+...+++.|=.  ....|+.... =+..||+...+ |...+.+..+  .+..+|  +|.+.+.-...   =...+.+.
T Consensus        18 e~~vl~~L~~Ry~--~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHif~vA~~Ay~~m~~~~~~Q~Ii   95 (710)
T d1br2a2          18 EASVLHNLRERYF--SGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSIL   95 (710)
T ss_dssp             HHHHHHHHHHHHH--TTCCEEECSSSEEEECCSSCCTTCCHHHHHHTTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHHHHc--CCCceeeECCEEEEECCCCCCCCCCHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHhCCCcEEE
Confidence            3344444555543  3345655443 23468987654 4444444332  223343  45544333222   24578999


Q ss_pred             EEccCCCCccchhhhhhhcc
Q psy2071          82 LVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        82 liG~nGsGKSTll~~i~g~~  101 (302)
                      |.|++|||||+-.+.++-.+
T Consensus        96 isGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          96 CTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             EECSTTSSHHHHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHHHH
Confidence            99999999999887776544

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.06  E-value=0.31  Score=42.22  Aligned_cols=43  Identities=14%  Similarity=0.163  Sum_probs=27.5

Q ss_pred             cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHH
Q psy2071         156 KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIK  203 (302)
Q Consensus       156 ~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~  203 (302)
                      ...|.-+-++..--.||......|-++|   |+...  ...++..+..
T Consensus       156 ~~tT~~ey~~~e~d~al~rrF~~v~v~e---p~~~~--~~~il~~~~~  198 (387)
T d1qvra2         156 GATTLDEYREIEKDPALERRFQPVYVDE---PTVEE--TISILRGLKE  198 (387)
T ss_dssp             EEECHHHHHHHTTCTTTCSCCCCEEECC---CCHHH--HHHHHHHHHH
T ss_pred             eecCHHHHHHhcccHHHHHhcccccCCC---CcHHH--HHHHHHHHHH
Confidence            3345555555555678999999999999   76432  2244444443

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=89.60  E-value=0.043  Score=45.98  Aligned_cols=18  Identities=28%  Similarity=0.525  Sum_probs=14.5

Q ss_pred             CCEEEEEccCCCCccchh
Q psy2071          77 NQCIVLVGETGSGKTTQI   94 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll   94 (302)
                      +..+.|.|+.||||||.+
T Consensus        24 ~g~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          24 EGPLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             SSCEEEEECTTSCHHHHH
T ss_pred             CCCEEEEecCCccHHHHH
Confidence            345778899999999865

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=89.26  E-value=0.05  Score=45.10  Aligned_cols=18  Identities=33%  Similarity=0.453  Sum_probs=14.7

Q ss_pred             CCEEEEEccCCCCccchh
Q psy2071          77 NQCIVLVGETGSGKTTQI   94 (302)
Q Consensus        77 g~i~~liG~nGsGKSTll   94 (302)
                      ...+.|+|+.||||||.+
T Consensus        14 ~~~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          14 TGPCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             SSEEEECCCTTSCHHHHH
T ss_pred             CCCEEEEeeCCccHHHHH
Confidence            445788999999999864

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.24  E-value=0.056  Score=45.54  Aligned_cols=20  Identities=35%  Similarity=0.539  Sum_probs=17.8

Q ss_pred             HhCCEEEEEccCCCCccchh
Q psy2071          75 AQNQCIVLVGETGSGKTTQI   94 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll   94 (302)
                      +.|++.++.|-+|+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            36889999999999999985

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=89.19  E-value=0.059  Score=42.54  Aligned_cols=36  Identities=17%  Similarity=0.258  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++.+..-+++-.++++.||.++|||++...|+..+
T Consensus        42 ~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          42 ALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             HHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            456666677788899999999999999988877664

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=89.16  E-value=0.13  Score=48.52  Aligned_cols=74  Identities=22%  Similarity=0.294  Sum_probs=44.8

Q ss_pred             ccccccc-cccCCCCCCCC-CChhhHHHHHh--hcCCC--hhHHHHHHHHH---HHhCCEEEEEccCCCCccchhhhhhh
Q psy2071          29 VSTSIAS-NLQVNPFTGYP-YTPRYHELHRK--RITLP--VFEYRTEFMTL---LAQNQCIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        29 ~~~~~~~-~~~~~~~~~~~-~~~~~~~l~~~--r~~lp--~~~~~~~i~~~---i~~g~i~~liG~nGsGKSTll~~i~g   99 (302)
                      .|+...+ =+..||+...+ |+..+.+..+.  +..+|  +|.+.+.-...   -..++.+.|.|++|||||+-.+.++-
T Consensus        37 iYT~~G~iLiaiNP~~~~~~y~~~~~~~y~~~~~~~~~PHif~vA~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il~  116 (730)
T d1w7ja2          37 IYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMR  116 (730)
T ss_dssp             CEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeeeECCEEEEECCCCCCCCCCHHHHHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3554333 24479987654 45555444432  23344  55544333222   34678999999999999998888766


Q ss_pred             ccc
Q psy2071         100 EYS  102 (302)
Q Consensus       100 ~~~  102 (302)
                      .+.
T Consensus       117 ~l~  119 (730)
T d1w7ja2         117 YFA  119 (730)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=89.05  E-value=0.054  Score=42.62  Aligned_cols=23  Identities=22%  Similarity=0.186  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++++|.-++|||||+..|.+..
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHH
Confidence            48999999999999999987654

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.95  E-value=0.058  Score=45.60  Aligned_cols=19  Identities=37%  Similarity=0.571  Sum_probs=17.3

Q ss_pred             hCCEEEEEccCCCCccchh
Q psy2071          76 QNQCIVLVGETGSGKTTQI   94 (302)
Q Consensus        76 ~g~i~~liG~nGsGKSTll   94 (302)
                      .|++..+.|-+|+|||||-
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            5889999999999999984

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.91  E-value=0.16  Score=41.27  Aligned_cols=36  Identities=14%  Similarity=0.138  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      +.+.+......+.-+.|.|+.|+||+++-+.|....
T Consensus        12 ~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          12 ILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             HHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            455666667778889999999999999998886543

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=88.29  E-value=0.065  Score=45.41  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.1

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ++.++||+|+|||.+.+.++-.+
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHh
Confidence            67889999999999999988655

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=88.16  E-value=0.065  Score=45.70  Aligned_cols=23  Identities=26%  Similarity=0.229  Sum_probs=18.8

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .|+|-|+=||||||+++.+.-.+
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC--
T ss_pred             EEEEECCcCCCHHHHHHHHHHHh
Confidence            37889999999999999987544

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.50  E-value=0.043  Score=45.89  Aligned_cols=38  Identities=13%  Similarity=0.156  Sum_probs=29.8

Q ss_pred             CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhh
Q psy2071          61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC   98 (302)
Q Consensus        61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~   98 (302)
                      ++..-..-|..+.+-+|+.++|+|+.|+||||++-.++
T Consensus        52 l~TGIraID~l~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          52 MQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             CCCSCHHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             cccCceEEecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence            33333456677888999999999999999999976554

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.48  E-value=0.084  Score=44.61  Aligned_cols=20  Identities=40%  Similarity=0.556  Sum_probs=17.9

Q ss_pred             HhCCEEEEEccCCCCccchh
Q psy2071          75 AQNQCIVLVGETGSGKTTQI   94 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll   94 (302)
                      +.|++..+.|-+|+|||||-
T Consensus        12 ~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            36889999999999999995

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=87.34  E-value=0.082  Score=42.28  Aligned_cols=21  Identities=19%  Similarity=0.485  Sum_probs=18.4

Q ss_pred             EEEEEccCCCCccchhhhhhh
Q psy2071          79 CIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g   99 (302)
                      .++++|.-++|||||+..|+.
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHHH
Confidence            489999999999999988754

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=85.62  E-value=0.12  Score=41.42  Aligned_cols=20  Identities=25%  Similarity=0.360  Sum_probs=18.1

Q ss_pred             EEEEccCCCCccchhhhhhh
Q psy2071          80 IVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        80 ~~liG~nGsGKSTll~~i~g   99 (302)
                      ++++|.-.+|||||+..|+.
T Consensus        12 i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            68999999999999999854

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=84.46  E-value=0.16  Score=41.78  Aligned_cols=27  Identities=22%  Similarity=0.249  Sum_probs=23.0

Q ss_pred             HhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          75 AQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        75 ~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .+-.++.|.||.++||||++..|+.++
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            445688999999999999999988765

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=83.46  E-value=0.17  Score=41.62  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.5

Q ss_pred             EEEEEccCCCCccchhhhhhhcc
Q psy2071          79 CIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .++|+|-+-+|||||++.+.|..
T Consensus       114 ~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         114 RALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEEecCccchhhhhhhhhccc
Confidence            38999999999999999998753

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.01  E-value=0.36  Score=37.85  Aligned_cols=37  Identities=27%  Similarity=0.364  Sum_probs=25.8

Q ss_pred             CCEEEEE-ccCCCCccchhhhhhhcccccCC-CEEEeecC
Q psy2071          77 NQCIVLV-GETGSGKTTQIPQWCVEYSKSVG-AKAVACTQ  114 (302)
Q Consensus        77 g~i~~li-G~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~  114 (302)
                      |.++++. +.-|+||||+--.++..+.- .| .+.+...+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~-~g~~VlliD~D   40 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGD-RGRKVLAVDGD   40 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHh-CCCCEEEEeCC
Confidence            5678888 67899999998777766653 44 55554443

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=82.70  E-value=0.17  Score=48.31  Aligned_cols=64  Identities=31%  Similarity=0.509  Sum_probs=38.2

Q ss_pred             cCCCCCCCC-CChhhHHHHHh--hcCCC--hhHHHHHH---HHHHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          38 QVNPFTGYP-YTPRYHELHRK--RITLP--VFEYRTEF---MTLLAQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        38 ~~~~~~~~~-~~~~~~~l~~~--r~~lp--~~~~~~~i---~~~i~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      ..||+...+ |...+.+..+.  +..+|  +|.+.+.-   ...-...+.+.|.|++|||||+-.+.++-.+
T Consensus        76 avNPyk~l~ly~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2          76 TVNPYKWLPVYNPKVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             EECCSSCCGGGCTTHHHHTTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EECCCCCCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            358886554 34444333322  23343  44443222   2223567899999999999999888776544

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.64  E-value=0.18  Score=42.98  Aligned_cols=21  Identities=14%  Similarity=0.276  Sum_probs=18.9

Q ss_pred             CEEEEEccCCCCccchhhhhh
Q psy2071          78 QCIVLVGETGSGKTTQIPQWC   98 (302)
Q Consensus        78 ~i~~liG~nGsGKSTll~~i~   98 (302)
                      ..++|+|.-|+|||||+..|+
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHH
Confidence            359999999999999998885

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=81.38  E-value=0.19  Score=47.90  Aligned_cols=63  Identities=27%  Similarity=0.467  Sum_probs=36.8

Q ss_pred             CCCCCCCC-CChhhHHHHHh--hcCCC--hhHHHHHHH-HH--HHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071          39 VNPFTGYP-YTPRYHELHRK--RITLP--VFEYRTEFM-TL--LAQNQCIVLVGETGSGKTTQIPQWCVEY  101 (302)
Q Consensus        39 ~~~~~~~~-~~~~~~~l~~~--r~~lp--~~~~~~~i~-~~--i~~g~i~~liG~nGsGKSTll~~i~g~~  101 (302)
                      .||+...+ |...+.+..+.  +..+|  +|.+.+.-. ..  -..++.+.|.|++|||||.-.+.++-.+
T Consensus        75 vNP~k~l~iy~~~~~~~y~~~~~~~~~PHiyavA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2          75 VNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             ECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            58886554 33433333322  22333  444432222 22  2457899999999999999877765544

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.22  E-value=0.22  Score=40.23  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=18.4

Q ss_pred             EEEEEccCCCCccchhhhhhh
Q psy2071          79 CIVLVGETGSGKTTQIPQWCV   99 (302)
Q Consensus        79 i~~liG~nGsGKSTll~~i~g   99 (302)
                      .++++|.-++|||||+..|+.
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~   28 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIY   28 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            489999999999999988754

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=81.15  E-value=0.18  Score=39.31  Aligned_cols=28  Identities=21%  Similarity=0.299  Sum_probs=21.2

Q ss_pred             HHHHHHHHHhCCEEEEEccCCCCccchh
Q psy2071          67 RTEFMTLLAQNQCIVLVGETGSGKTTQI   94 (302)
Q Consensus        67 ~~~i~~~i~~g~i~~liG~nGsGKSTll   94 (302)
                      .......+-.|+-+.++-|+|||||...
T Consensus        30 Q~~ai~~~l~g~~vlv~apTGsGKT~~~   57 (206)
T d1oywa2          30 QEEIIDTVLSGRDCLVVMPTGGGKSLCY   57 (206)
T ss_dssp             HHHHHHHHHTTCCEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEcCCCCCCcchh
Confidence            3444456677888999999999998653