Psyllid ID: psy2111

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60---
Protein Sequence
MGEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSLQQA
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHcccccccEEEEEEEcHHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHccccccccEEEEEEEcHHHHHHHccHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MGEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRyeryherfpqakalvaplkpsndrryslqqa
Flexible Loop (DISEMBL)
mgevgwekkrrayrtlhgawfnsklvTVKYLRYERYHErfpqakalvaplkpsndrryslqqa
Low Complexity Region (SEG)
MGEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSLQQA
Disordered region (IsUnstruct)
********KRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALV****************
Disordered Region (DISOPRED)
*******KKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKA******************
Disordered Region (DISEMBL)
MGEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKP***********
Disordered Region (DISPRO)
**EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALV****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSLQQA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	63	2.2.26 [Sep-21-2011]
Q9WU40	921	Inner nuclear membrane pr	yes	N/A	0.793	0.054	0.6	5e-12
Q9Y2U8	911	Inner nuclear membrane pr	yes	N/A	0.793	0.054	0.6	6e-12

>sp|Q9WU40|MAN1_MOUSE Inner nuclear membrane protein Man1 OS=Mus musculus GN=Lemd3 PE=1 SV=2

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 37/50 (74%)

Query: 11  RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
           +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKP+N    SL
Sbjct: 856 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCNTPLKPANKHMNSL 905

Can function as a specific repressor of TGF-beta, activin, and BMP signaling through its interaction with the R-SMAD proteins. Antagonizes TGF-beta-induced cell proliferation arrest.
Mus musculus (taxid: 10090)

>sp|Q9Y2U8|MAN1_HUMAN Inner nuclear membrane protein Man1 OS=Homo sapiens GN=LEMD3 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 37/50 (74%)

Query: 11  RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
           +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKPSN    S+
Sbjct: 846 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTSNTPLKPSNKHMNSM 895

Can function as a specific repressor of TGF-beta, activin, and BMP signaling through its interaction with the R-SMAD proteins. Antagonizes TGF-beta-induced cell proliferation arrest.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	63
307204655	834	Inner nuclear membrane protein Man1 [Har	0.873	0.065	0.654	3e-14
383855184	822	PREDICTED: inner nuclear membrane protei	0.873	0.066	0.636	3e-14
307189393	231	Inner nuclear membrane protein Man1 [Cam	0.793	0.216	0.72	3e-14
332026251	832	Inner nuclear membrane protein Man1 [Acr	0.873	0.066	0.654	5e-14
322787987	824	hypothetical protein SINV_07462 [Solenop	0.873	0.066	0.654	6e-14
350417932	826	PREDICTED: inner nuclear membrane protei	0.873	0.066	0.618	2e-13
380019524	656	PREDICTED: uncharacterized protein LOC10	0.873	0.083	0.618	5e-13
241577756	660	LEM domain-containing protein, putative	0.904	0.086	0.578	9e-12
328702358	597	PREDICTED: inner nuclear membrane protei	0.809	0.085	0.607	2e-11
242009110	788	conserved hypothetical protein [Pediculu	0.793	0.063	0.64	3e-11

>gi|307204655|gb|EFN83277.1| Inner nuclear membrane protein Man1 [Harpegnathos saltator]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query: 7   EKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSLQ 61
           E   +AYR LHG WF+  LVTVKYLR ERYHERFP A   V PLKPSN++R S+Q
Sbjct: 769 EDAGKAYRALHGCWFDGNLVTVKYLRLERYHERFPDAARCVTPLKPSNNQRLSMQ 823

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855184|ref|XP_003703097.1| PREDICTED: inner nuclear membrane protein Man1-like [Megachile rotundata]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 41/55 (74%)

Query: 7   EKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSLQ 61
           E   +AYR LHG WF+  LVTVKYLR ERYHERFP A+    PLKPSN++R S+Q
Sbjct: 765 EDAGKAYRALHGCWFDGHLVTVKYLRLERYHERFPDARRCTTPLKPSNNQRLSMQ 819

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189393|gb|EFN73803.1| Inner nuclear membrane protein Man1 [Camponotus floridanus]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 40/50 (80%)

Query: 12  AYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSLQ 61
           AYR LHG WF+ KLVTVKYLR ERYHERFP A   + PLKPSN++R SLQ
Sbjct: 171 AYRALHGCWFDGKLVTVKYLRLERYHERFPDAARCITPLKPSNNQRLSLQ 220

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026251|gb|EGI66390.1| Inner nuclear membrane protein Man1 [Acromyrmex echinatior]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query: 7   EKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSLQ 61
           E   +AYR LHG WF+  LVTVKYLR ERYHERFP A   V PLKPSN++R S+Q
Sbjct: 767 EDAGKAYRALHGCWFDGNLVTVKYLRLERYHERFPDAARCVTPLKPSNNQRLSMQ 821

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787987|gb|EFZ13828.1| hypothetical protein SINV_07462 [Solenopsis invicta]

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query: 7   EKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSLQ 61
           E   +AYR LHG WF+  LVTVKYLR ERYHERFP A   V PLKPSN++R S+Q
Sbjct: 759 EDAGKAYRALHGCWFDGNLVTVKYLRLERYHERFPDAARCVTPLKPSNNQRLSMQ 813

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417932|ref|XP_003491651.1| PREDICTED: inner nuclear membrane protein Man1-like [Bombus impatiens]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 41/55 (74%)

Query: 7   EKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSLQ 61
           E   +AYR LHG WF+  LVTVKYLR ERY+ERFP A+    PLKPSN++R S+Q
Sbjct: 769 EDAGKAYRALHGCWFDGHLVTVKYLRLERYYERFPDARRCTTPLKPSNNQRLSMQ 823

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019524|ref|XP_003693654.1| PREDICTED: uncharacterized protein LOC100863894 [Apis florea]

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 41/55 (74%)

Query: 7   EKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSLQ 61
           E   +AYR LHG WF+  LVTVKYLR ERY+ERFP A+    PLKPSN++R S+Q
Sbjct: 599 EDAGKAYRALHGCWFDGHLVTVKYLRLERYYERFPDARRCTTPLKPSNNQRLSMQ 653

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241577756|ref|XP_002403644.1| LEM domain-containing protein, putative [Ixodes scapularis] gi|215500245|gb|EEC09739.1| LEM domain-containing protein, putative [Ixodes scapularis]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 41/57 (71%)

Query: 7   EKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSLQQA 63
           E   +AYR LHG+WF+  L+TVKYLR ERYHERFP+++    PLKPSN  R SL  +
Sbjct: 596 EAAGQAYRALHGSWFDGNLITVKYLRLERYHERFPESQYCREPLKPSNSLRLSLDAS 652

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702358|ref|XP_001952027.2| PREDICTED: inner nuclear membrane protein Man1-like [Acyrthosiphon pisum]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 11  RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSLQ 61
           +AYR LHG W++ KLVTVK+LR ERYH+RFP A ++  PL PSN+ + SLQ
Sbjct: 547 KAYRQLHGFWYDGKLVTVKFLRLERYHQRFPDAVSMTIPLTPSNNEKRSLQ 597

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009110|ref|XP_002425335.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212509120|gb|EEB12597.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/50 (64%), Positives = 38/50 (76%)

Query: 12  AYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSLQ 61
           AYR LHG+WF+  L+TVKYLR ERYHERFP +     PL+PSN+ R SLQ
Sbjct: 732 AYRQLHGSWFDGALITVKYLRLERYHERFPDSTYARTPLRPSNNLRLSLQ 781

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	63
UNIPROTKB|F1NHX3	406	LEMD3 "Uncharacterized protein	0.793	0.123	0.6	6.2e-12
UNIPROTKB|F1NZN4	436	LEMD3 "Uncharacterized protein	0.793	0.114	0.6	7.3e-12
UNIPROTKB|J9NVV1	615	LEMD3 "Uncharacterized protein	0.793	0.081	0.6	1.3e-11
UNIPROTKB|F1PZA4	708	LEMD3 "Uncharacterized protein	0.793	0.070	0.6	1.7e-11
UNIPROTKB|E1BIJ4	913	LEMD3 "Uncharacterized protein	0.793	0.054	0.6	2.4e-11
ZFIN|ZDB-GENE-030131-490	841	lemd3 "LEM domain containing 3	0.888	0.066	0.535	2.7e-11
UNIPROTKB|Q9Y2U8	911	LEMD3 "Inner nuclear membrane	0.793	0.054	0.6	3e-11
MGI|MGI:3580376	921	Lemd3 "LEM domain containing 3	0.793	0.054	0.6	3.1e-11
UNIPROTKB|F1LWZ8	902	Lemd3 "Protein Lemd3" [Rattus	0.793	0.055	0.58	6.3e-11
RGD|1596822	923	Lemd3 "LEM domain containing 3	0.793	0.054	0.58	6.5e-11

UNIPROTKB|F1NHX3 LEMD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 168 (64.2 bits), Expect = 6.2e-12, P = 6.2e-12
 Identities = 30/50 (60%), Positives = 37/50 (74%)

Query:    11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
             +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKPSN    S+
Sbjct:   341 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCNTPLKPSNKHMNSM 390

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005639 "integral to nuclear inner membrane" evidence=IEA

UNIPROTKB|F1NZN4 LEMD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 168 (64.2 bits), Expect = 7.3e-12, P = 7.3e-12
 Identities = 30/50 (60%), Positives = 37/50 (74%)

Query:    11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
             +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKPSN    S+
Sbjct:   371 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCNTPLKPSNKHMNSM 420

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005639 "integral to nuclear inner membrane" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030514 "negative regulation of BMP signaling pathway" evidence=IEA

GO:0032926 "negative regulation of activin receptor signaling pathway" evidence=IEA

GO:0035914 "skeletal muscle cell differentiation" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

UNIPROTKB|J9NVV1 LEMD3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 168 (64.2 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 30/50 (60%), Positives = 37/50 (74%)

Query:    11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
             +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKPSN    S+
Sbjct:   550 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCNTPLKPSNKHMNSM 599

GO:0005639 "integral to nuclear inner membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1PZA4 LEMD3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 168 (64.2 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 30/50 (60%), Positives = 37/50 (74%)

Query:    11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
             +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKPSN    S+
Sbjct:   643 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCNTPLKPSNKHMNSM 692

GO:0005639 "integral to nuclear inner membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E1BIJ4 LEMD3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 168 (64.2 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 30/50 (60%), Positives = 37/50 (74%)

Query:    11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
             +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKPSN    S+
Sbjct:   848 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCNTPLKPSNKHMNSM 897

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0035914 "skeletal muscle cell differentiation" evidence=IEA

GO:0032926 "negative regulation of activin receptor signaling pathway" evidence=IEA

GO:0030514 "negative regulation of BMP signaling pathway" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0005639 "integral to nuclear inner membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-030131-490 lemd3 "LEM domain containing 3" [Danio rerio (taxid:7955)]

 Score = 167 (63.8 bits), Expect = 2.7e-11, P = 2.7e-11
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query:     7 EKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSLQQ 62
             E   +A++ LHG+WF+ KLVTVKYLR +RYH+RFPQA     PLKPS+    S+ +
Sbjct:   771 EHSGKAFKALHGSWFDGKLVTVKYLRLDRYHQRFPQALGSNTPLKPSSSSMNSMSR 826

GO:0005639 "integral to nuclear inner membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q9Y2U8 LEMD3 "Inner nuclear membrane protein Man1" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 30/50 (60%), Positives = 37/50 (74%)

Query:    11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
             +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKPSN    S+
Sbjct:   846 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTSNTPLKPSNKHMNSM 895

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005639 "integral to nuclear inner membrane" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0035914 "skeletal muscle cell differentiation" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IDA

GO:0032926 "negative regulation of activin receptor signaling pathway" evidence=IDA

GO:0030514 "negative regulation of BMP signaling pathway" evidence=IDA

GO:0005637 "nuclear inner membrane" evidence=IDA

GO:0016020 "membrane" evidence=TAS

GO:0016021 "integral to membrane" evidence=IDA

MGI|MGI:3580376 Lemd3 "LEM domain containing 3" [Mus musculus (taxid:10090)]

 Score = 167 (63.8 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 30/50 (60%), Positives = 37/50 (74%)

Query:    11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
             +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKP+N    SL
Sbjct:   856 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCNTPLKPANKHMNSL 905

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005637 "nuclear inner membrane" evidence=ISO

GO:0005639 "integral to nuclear inner membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=ISO

GO:0030514 "negative regulation of BMP signaling pathway" evidence=ISO

GO:0032926 "negative regulation of activin receptor signaling pathway" evidence=ISO

GO:0035914 "skeletal muscle cell differentiation" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=IMP

UNIPROTKB|F1LWZ8 Lemd3 "Protein Lemd3" [Rattus norvegicus (taxid:10116)]

 Score = 164 (62.8 bits), Expect = 6.3e-11, P = 6.3e-11
 Identities = 29/50 (58%), Positives = 37/50 (74%)

Query:    11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
             +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKPS+    S+
Sbjct:   837 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCSTPLKPSDKHMNSM 886

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005639 "integral to nuclear inner membrane" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030514 "negative regulation of BMP signaling pathway" evidence=IEA

GO:0032926 "negative regulation of activin receptor signaling pathway" evidence=IEA

GO:0035914 "skeletal muscle cell differentiation" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

RGD|1596822 Lemd3 "LEM domain containing 3" [Rattus norvegicus (taxid:10116)]

 Score = 164 (62.8 bits), Expect = 6.5e-11, P = 6.5e-11
 Identities = 29/50 (58%), Positives = 37/50 (74%)

Query:    11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
             +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKPS+    S+
Sbjct:   858 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCSTPLKPSDKHMNSM 907

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005635 "nuclear envelope" evidence=ISO

GO:0005637 "nuclear inner membrane" evidence=ISO

GO:0005639 "integral to nuclear inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=ISO

GO:0030514 "negative regulation of BMP signaling pathway" evidence=ISO

GO:0032926 "negative regulation of activin receptor signaling pathway" evidence=ISO

GO:0035914 "skeletal muscle cell differentiation" evidence=ISO

GO:0051726 "regulation of cell cycle" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9WU40	MAN1_MOUSE	No assigned EC number	0.6	0.7936	0.0542	yes	N/A
Q9Y2U8	MAN1_HUMAN	No assigned EC number	0.6	0.7936	0.0548	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	63
cd12286	92	cd12286, RRM_Man1, RNA recognition motif in inner	2e-14

>gnl|CDD|240732 cd12286, RRM_Man1, RNA recognition motif in inner nuclear membrane protein Man1 (Man1) and similar proteins

 Score = 60.8 bits (148), Expect = 2e-14
 Identities = 21/31 (67%), Positives = 26/31 (83%)

Query: 11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFP 41
          +A++ LHG WF+ +LVTVKYLR ERYH RFP
Sbjct: 62 KAFKALHGWWFDGRLVTVKYLRLERYHSRFP 92

This subfamily corresponds to the RRM of Man1, also termed LEM domain-containing protein 3 (LEMD3), an integral protein of the inner nuclear membrane that binds to nuclear lamins and emerin, thus playing a role in nuclear organization. It is part of a protein complex essential for chromatin organization and cell division. It also functions as an important negative regulator for the transforming growth factor (TGF) beta/activin/Nodal signaling pathway by directly interacting with chromatin-associated proteins and transcriptional regulators, including the R-Smads, Smad1, Smad2, and Smad3. Moreover, Man1 is a unique type of left-right (LR) signaling regulator that acts on the inner nuclear membrane. Man1 plays a crucial role in angiogenesis. The vascular remodeling can be regulated at the inner nuclear membrane through the interaction between Man1 and Smads. Man1 contains an N-terminal LEM domain, two putative transmembrane domains, a MAN1-Src1p C-terminal (MSC) domain, and a C-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The LEM domain interacts with the DNA and chromatin-binding protein Barrier-to-Autointegration Factor, and is also necessary for efficient localization of MAN1 in the inner nuclear membrane. Research has indicated that C-terminal nucleoplasmic region of Man1 exhibits a DNA binding winged helix domain and is responsible for both DNA- and Smad-binding. . Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	63
KOG0147|consensus	549		99.79
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.13
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	98.91
KOG2202|consensus	260		98.75
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	98.62
KOG1548|consensus	382		98.48
KOG0120|consensus	500		98.41
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	98.4
smart00361	70	RRM_1 RNA recognition motif.	98.24
KOG1996|consensus	378		97.79
KOG0124|consensus	544		97.59
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	97.48
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	96.82
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	96.74
smart00360	71	RRM RNA recognition motif.	96.51
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	96.4
smart00362	72	RRM_2 RNA recognition motif.	96.04
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	95.33
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	95.31
KOG0148|consensus	321		95.11
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	94.6
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	93.26
KOG4208|consensus	214		92.94
COG0724	306	RNA-binding proteins (RRM domain) [General functio	92.43
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	91.82
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	91.74
KOG4212|consensus	608		91.2
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	91.05
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	90.11
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	89.96
KOG0107|consensus	195		89.42
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	88.94
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	88.67
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	88.26
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	85.75
KOG0123|consensus	369		84.13
KOG0131|consensus	203		83.33
COG5175	480	MOT2 Transcriptional repressor [Transcription]	83.13
PLN03120	260	nucleic acid binding protein; Provisional	82.4
KOG0108|consensus	435		82.18

>KOG0147|consensus

Probab=99.79  E-value=7e-20  Score=141.79  Aligned_cols=54  Identities=35%  Similarity=0.658  Sum_probs=51.6

Q ss_pred             CCCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhhCcCcccCCcccccCC
Q psy2111           1 MGEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSN   54 (63)
Q Consensus         1 ~kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~FP~a~~a~~pL~ps~   54 (63)
                      +||+|+++|..|+++||||||+||+|+|.|+|++.||.+||++..+...|.++.
T Consensus       495 vrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~~FP~~~~~~~~~~~~~  548 (549)
T KOG0147|consen  495 VRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHSKFPDSKAAPLLFHTNE  548 (549)
T ss_pred             EecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhhhCCCcccceeeeeccC
Confidence            489999999999999999999999999999999999999999999999988764

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.13  E-value=4.8e-11  Score=86.56  Aligned_cols=41  Identities=17%  Similarity=0.341  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhhCcC
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQ   42 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~FP~   42 (63)
                      +|.+.|+|..|++.||||||+||.|+|+|++++.|...||.
T Consensus       416 ~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~~~~~~~  456 (457)
T TIGR01622       416 KFSSVDAALAAFQALNGRYFGGKMITAAFVVNDVYDMSCLP  456 (457)
T ss_pred             EECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHHHHhhcCC
Confidence            68899999999999999999999999999999999999985

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=98.91  E-value=7.9e-10  Score=86.99  Aligned_cols=37  Identities=16%  Similarity=0.164  Sum_probs=35.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHE   38 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~   38 (63)
                      ++.++++|.+|++.||||||+||+|.|+|.+.+.|+.
T Consensus       571 ~F~~~~~A~~A~~~LnGR~F~GR~V~a~~yd~~~f~~  607 (612)
T TIGR01645       571 EFSDSMEVDRAKAALDGRFFGGRTVVAEAYDQILFDH  607 (612)
T ss_pred             EECCHHHHHHHHHHhcCCeECCeEEEEEEcCHHHhhc
Confidence            6889999999999999999999999999999999975

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG2202|consensus

Probab=98.75  E-value=6e-09  Score=75.62  Aligned_cols=38  Identities=16%  Similarity=0.288  Sum_probs=35.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER   39 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~   39 (63)
                      ++-++|+|++|++.||||||+|++|.|+++|++++...
T Consensus       116 ~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea  153 (260)
T KOG2202|consen  116 KFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREA  153 (260)
T ss_pred             hcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhh
Confidence            56789999999999999999999999999999998764

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=98.62  E-value=2.5e-08  Score=73.19  Aligned_cols=37  Identities=16%  Similarity=0.312  Sum_probs=35.1

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHE   38 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~   38 (63)
                      .|.++++|.+|+..||||||+||.|.++|++.+.|..
T Consensus       470 ~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~~~~  506 (509)
T TIGR01642       470 EYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDCYKA  506 (509)
T ss_pred             EECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHHhhc
Confidence            5789999999999999999999999999999999975

Members of this subfamily are found in plants, metazoa and fungi.

>KOG1548|consensus

Probab=98.48  E-value=7.9e-08  Score=72.66  Aligned_cols=32  Identities=19%  Similarity=0.351  Sum_probs=28.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|..|++.||||||+||+|+|+...-
T Consensus       320 ~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG  351 (382)
T KOG1548|consen  320 SFRNNEEADQCIQTMDGRWFDGRQLTASIWDG  351 (382)
T ss_pred             EeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence            46789999999999999999999999987643

>KOG0120|consensus

Probab=98.41  E-value=1.9e-07  Score=72.59  Aligned_cols=41  Identities=27%  Similarity=0.378  Sum_probs=38.8

Q ss_pred             CCCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhhCc
Q psy2111           1 MGEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFP   41 (63)
Q Consensus         1 ~kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~FP   41 (63)
                      ++|.|+++|++|+.+|+||=|+||.|.+.|++++.||.++.
T Consensus       459 Vefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY~~r~~  499 (500)
T KOG0120|consen  459 VEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKYHAREF  499 (500)
T ss_pred             EEecChHHHHHHHHHccCceeCCcEEEEEecCHHHhhcccc
Confidence            36899999999999999999999999999999999999875

>PF13893 RRM_5: RNA recognition motif

Probab=98.40  E-value=2.8e-07  Score=50.38  Aligned_cols=30  Identities=27%  Similarity=0.393  Sum_probs=27.6

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      .+.+.++|..|++.|||++|+||.|.++|.
T Consensus        27 ~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a   56 (56)
T PF13893_consen   27 EFASVEDAQKAIEQLNGRQFNGRPLKVSYA   56 (56)
T ss_dssp             EESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred             EECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence            357999999999999999999999999984

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>smart00361 RRM_1 RNA recognition motif

Probab=98.24  E-value=8.6e-07  Score=50.92  Aligned_cols=28  Identities=25%  Similarity=0.328  Sum_probs=25.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEE
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVK   29 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Ae   29 (63)
                      .+.+.++|.+|++.||||||+||.|++.
T Consensus        43 ~f~~~~dA~~A~~~l~g~~~~gr~l~~~   70 (70)
T smart00361       43 TFERSEDAARAIVDLNGRYFDGRTVKAE   70 (70)
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence            3578999999999999999999999873

>KOG1996|consensus

Probab=97.79  E-value=1.6e-05  Score=59.91  Aligned_cols=37  Identities=19%  Similarity=0.349  Sum_probs=34.4

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER   39 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~   39 (63)
                      +..+++|.+|+=.||||||+||.+.|-|+.++.|..+
T Consensus       336 F~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekfs~~  372 (378)
T KOG1996|consen  336 FERVESAIKAVVDLNGRYFGGRVVSACFYNLEKFSNL  372 (378)
T ss_pred             eccHHHHHHHHHhcCCceecceeeeheeccHHhhhhh
Confidence            5678999999999999999999999999999999764

>KOG0124|consensus

Probab=97.59  E-value=2.8e-05  Score=60.30  Aligned_cols=36  Identities=22%  Similarity=0.309  Sum_probs=31.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHH
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYH   37 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~   37 (63)
                      +++...++.+|.++|+||||+||.|.||.+...+|-
T Consensus       503 efS~~~e~~rak~ALdGRfFgGr~VvAE~YDQ~~FD  538 (544)
T KOG0124|consen  503 EFSIASETHRAKQALDGRFFGGRKVVAEVYDQERFD  538 (544)
T ss_pred             eechhhHHHHHHHhhccceecCceeehhhhhhhccc
Confidence            456677889999999999999999999999887764

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=97.48  E-value=9.3e-05  Score=51.86  Aligned_cols=32  Identities=13%  Similarity=0.278  Sum_probs=29.4

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      +.+.++|..|++.|||.+|+||.|++.|....
T Consensus       318 F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~  349 (352)
T TIGR01661       318 MTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK  349 (352)
T ss_pred             ECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence            57899999999999999999999999998654

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=96.82  E-value=0.0012  Score=34.76  Aligned_cols=28  Identities=18%  Similarity=0.261  Sum_probs=25.8

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKY   30 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey   30 (63)
                      +.+.++|..|++.+||.+|+|+.|++.|
T Consensus        47 f~s~~~a~~a~~~~~~~~~~~~~~~v~~   74 (74)
T cd00590          47 FEDEEDAEKALEALNGKELGGRPLRVEF   74 (74)
T ss_pred             ECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence            5789999999999999999999999875

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>PF14259 RRM_6: RNA recognition motif (a

Probab=96.74  E-value=0.0015  Score=36.18  Aligned_cols=26  Identities=19%  Similarity=0.206  Sum_probs=23.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeE
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVT   27 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~   27 (63)
                      .+.|+++|..|++.+||.+|+||.|.
T Consensus        45 ~f~~~~~a~~al~~~~~~~~~g~~l~   70 (70)
T PF14259_consen   45 EFSSEEDAKRALELLNGKEIDGRKLR   70 (70)
T ss_dssp             EESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             EeCCHHHHHHHHHHCCCcEECCEEcC
Confidence            46899999999999999999999873

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>smart00360 RRM RNA recognition motif

Probab=96.51  E-value=0.002  Score=33.53  Aligned_cols=28  Identities=21%  Similarity=0.244  Sum_probs=24.9

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEE
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVK   29 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Ae   29 (63)
                      .+.+.++|..|++.|||..|+|+.|.++
T Consensus        44 ~f~~~~~a~~a~~~~~~~~~~~~~~~v~   71 (71)
T smart00360       44 EFESEEDAEKALEALNGKELDGRPLKVK   71 (71)
T ss_pred             EeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence            3678999999999999999999998763

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=96.40  E-value=0.0028  Score=47.83  Aligned_cols=32  Identities=22%  Similarity=0.187  Sum_probs=29.0

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||++|+||.|.+.+-..
T Consensus       332 ~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~  363 (562)
T TIGR01628       332 CFSNPEEANRAVTEMHGRMLGGKPLYVALAQR  363 (562)
T ss_pred             EeCCHHHHHHHHHHhcCCeeCCceeEEEeccC
Confidence            46899999999999999999999999998653

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>smart00362 RRM_2 RNA recognition motif

Probab=96.04  E-value=0.007  Score=31.57  Aligned_cols=27  Identities=19%  Similarity=0.225  Sum_probs=24.3

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEE
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVK   29 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Ae   29 (63)
                      +.+.++|..|++.|||..|+|+.|+++
T Consensus        46 f~~~~~a~~a~~~~~~~~~~~~~i~v~   72 (72)
T smart00362       46 FESEEDAEKAIEALNGTKLGGRPLRVE   72 (72)
T ss_pred             eCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence            568899999999999999999998863

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=95.33  E-value=0.021  Score=37.24  Aligned_cols=30  Identities=13%  Similarity=0.046  Sum_probs=27.7

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.|+|..|++.|||..++||.|.+++-.
T Consensus        83 F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~  112 (144)
T PLN03134         83 FNDEGAATAAISEMDGKELNGRHIRVNPAN  112 (144)
T ss_pred             ECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence            578999999999999999999999999864

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=95.31  E-value=0.014  Score=40.94  Aligned_cols=31  Identities=29%  Similarity=0.404  Sum_probs=28.1

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.++++|.+|++.|||.++.||.|.++|-.
T Consensus        51 ~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~   81 (352)
T TIGR01661        51 NYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR   81 (352)
T ss_pred             EECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence            3678999999999999999999999999864

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>KOG0148|consensus

Probab=95.11  E-value=0.017  Score=43.31  Aligned_cols=29  Identities=14%  Similarity=0.388  Sum_probs=26.0

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      +..-++|+.||+.|||-|.++|.|....-
T Consensus       111 f~~k~dAEnAI~~MnGqWlG~R~IRTNWA  139 (321)
T KOG0148|consen  111 FPNKEDAENAIQQMNGQWLGRRTIRTNWA  139 (321)
T ss_pred             ccchHHHHHHHHHhCCeeeccceeecccc
Confidence            56789999999999999999999998754

>PF00076 RRM_1: RNA recognition motif

Probab=94.60  E-value=0.03  Score=30.04  Aligned_cols=26  Identities=19%  Similarity=0.202  Sum_probs=23.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeE
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVT   27 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~   27 (63)
                      .+.+.++|.+|++.|||--++|+.|.
T Consensus        45 ~F~~~~~a~~a~~~l~g~~~~~~~ir   70 (70)
T PF00076_consen   45 EFESEEDAEKALEELNGKKINGRKIR   70 (70)
T ss_dssp             EESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             EEcCHHHHHHHHHHcCCCEECccCcC
Confidence            46789999999999999999999884

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=93.26  E-value=0.096  Score=41.60  Aligned_cols=32  Identities=16%  Similarity=0.108  Sum_probs=29.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .|.+.|+|.+|++.|||.-|+||.|.+++...
T Consensus       275 eF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp  306 (578)
T TIGR01648       275 HFEDREDAVKAMDELNGKELEGSEIEVTLAKP  306 (578)
T ss_pred             EeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence            47899999999999999999999999998854

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG4208|consensus

Probab=92.94  E-value=0.11  Score=37.21  Aligned_cols=33  Identities=15%  Similarity=0.044  Sum_probs=31.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      -+.|+|.|..|..+||+=.|-|+++.|.|||.+
T Consensus        98 EFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe  130 (214)
T KOG4208|consen   98 EFESEEVAKIAAETMNNYLLMEHLLECHVMPPE  130 (214)
T ss_pred             EeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence            368999999999999999999999999999998

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=92.43  E-value=0.12  Score=32.50  Aligned_cols=32  Identities=16%  Similarity=0.110  Sum_probs=29.1

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|..|+..|||-+|.||.|.+.+...
T Consensus       163 ~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~  194 (306)
T COG0724         163 EFESEESAEKAIEELNGKELEGRPLRVQKAQP  194 (306)
T ss_pred             EecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence            35789999999999999999999999999764

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=91.82  E-value=0.19  Score=36.69  Aligned_cols=31  Identities=16%  Similarity=0.217  Sum_probs=28.2

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||-.+.||.|.+.|..
T Consensus       234 ~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~  264 (457)
T TIGR01622       234 QFHDAEEAKEALEVMNGFELAGRPIKVGYAQ  264 (457)
T ss_pred             EECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence            3578999999999999999999999999954

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=91.74  E-value=0.17  Score=37.42  Aligned_cols=30  Identities=27%  Similarity=0.303  Sum_probs=27.6

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.++|+|.+|+..|||..+.||.|.++|..
T Consensus       156 F~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~  185 (346)
T TIGR01659       156 FGSEADSQRAIKNLNGITVRNKRLKVSYAR  185 (346)
T ss_pred             EccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence            578999999999999999999999998854

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>KOG4212|consensus

Probab=91.20  E-value=0.2  Score=40.02  Aligned_cols=30  Identities=20%  Similarity=0.334  Sum_probs=28.3

Q ss_pred             CCCCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111           1 MGEVGWEKKRRAYRTLHGAWFNSKLVTVKY   30 (63)
Q Consensus         1 ~kc~s~e~A~~A~~~LhGRWF~GR~I~Aey   30 (63)
                      +|+.++|+|+.|+..|+|--.+||.|.+.|
T Consensus       578 VrF~s~edAEra~a~Mngs~l~Gr~I~V~y  607 (608)
T KOG4212|consen  578 VRFFSPEDAERACALMNGSRLDGRNIKVTY  607 (608)
T ss_pred             EEecCHHHHHHHHHHhccCcccCceeeeee
Confidence            378899999999999999999999999987

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=91.05  E-value=0.26  Score=36.41  Aligned_cols=30  Identities=13%  Similarity=-0.069  Sum_probs=27.7

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|..|+..|||-.++|+.|.+++..
T Consensus       344 f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~  373 (509)
T TIGR01642       344 YKDPSVTDVAIAALNGKDTGDNKLHVQRAC  373 (509)
T ss_pred             ECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence            578999999999999999999999999864

Members of this subfamily are found in plants, metazoa and fungi.

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=90.11  E-value=0.23  Score=31.49  Aligned_cols=33  Identities=15%  Similarity=0.092  Sum_probs=25.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      ++.+.|.|..|++.|+|=--=|+.|++.|.|..
T Consensus        45 rF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~   77 (90)
T PF11608_consen   45 RFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN   77 (90)
T ss_dssp             EESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred             EeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence            678999999999999999999999999999865

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=89.96  E-value=0.35  Score=36.52  Aligned_cols=31  Identities=16%  Similarity=0.050  Sum_probs=27.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCce------eEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKL------VTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~------I~Aey~p   32 (63)
                      .+.+.++|..|+..|||..++|+-      |.+.|..
T Consensus       442 eF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~  478 (481)
T TIGR01649       442 EWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFST  478 (481)
T ss_pred             EcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEecc
Confidence            468999999999999999999995      8888764

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>KOG0107|consensus

Probab=89.42  E-value=0.3  Score=34.60  Aligned_cols=31  Identities=16%  Similarity=-0.018  Sum_probs=28.4

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      +.++-+|..|++.|+|+=|.|..|+||+..-
T Consensus        54 Fed~RDA~DAvr~LDG~~~cG~r~rVE~S~G   84 (195)
T KOG0107|consen   54 FEDPRDAEDAVRYLDGKDICGSRIRVELSTG   84 (195)
T ss_pred             ccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence            6788899999999999999999999998754

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=88.94  E-value=0.51  Score=35.67  Aligned_cols=32  Identities=16%  Similarity=0.014  Sum_probs=28.7

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      +.+.++|..|++.|||.=+.||.|.+++...+
T Consensus       320 f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~  351 (481)
T TIGR01649       320 MADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ  351 (481)
T ss_pred             ECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence            57899999999999999999999999987543

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=88.67  E-value=0.37  Score=36.52  Aligned_cols=29  Identities=24%  Similarity=0.152  Sum_probs=26.1

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKY   30 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey   30 (63)
                      .+.+.|+|.+|++.|||.+++|+.|.+..
T Consensus       135 ~F~~~e~A~~Ai~~lng~~~~~~~i~v~~  163 (562)
T TIGR01628       135 HFEKEESAKAAIQKVNGMLLNDKEVYVGR  163 (562)
T ss_pred             EECCHHHHHHHHHHhcccEecCceEEEec
Confidence            46789999999999999999999998854

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=88.26  E-value=0.36  Score=38.79  Aligned_cols=27  Identities=15%  Similarity=0.118  Sum_probs=25.6

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEE
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVK   29 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Ae   29 (63)
                      +.+.++|..|++.|||..++||.|.+.
T Consensus       156 F~s~e~A~~Ai~~lnG~~i~GR~IkV~  182 (612)
T TIGR01645       156 YEVPEAAQLALEQMNGQMLGGRNIKVG  182 (612)
T ss_pred             eCcHHHHHHHHHhcCCeEEecceeeec
Confidence            678999999999999999999999997

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=85.75  E-value=0.85  Score=33.77  Aligned_cols=32  Identities=16%  Similarity=0.066  Sum_probs=27.0

Q ss_pred             CCCCHHHHHHHHHHHhccccCC--ceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNS--KLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~G--R~I~Aey~p~   33 (63)
                      .+.+.|+|.+|++.|||.-+.|  +.|++.+...
T Consensus       241 ~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~  274 (346)
T TIGR01659       241 RFNKREEAQEAISALNNVIPEGGSQPLTVRLAEE  274 (346)
T ss_pred             EECCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence            3678999999999999999977  6888887654

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>KOG0123|consensus

Probab=84.13  E-value=1.2  Score=33.41  Aligned_cols=30  Identities=23%  Similarity=0.277  Sum_probs=26.3

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.++++|.+|++.|||..+.|+.|-+.--.
T Consensus       122 f~~e~~a~~ai~~~ng~ll~~kki~vg~~~  151 (369)
T KOG0123|consen  122 FESEESAKKAIEKLNGMLLNGKKIYVGLFE  151 (369)
T ss_pred             eCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence            578999999999999999999999875443

>KOG0131|consensus

Probab=83.33  E-value=1.3  Score=31.59  Aligned_cols=32  Identities=19%  Similarity=0.351  Sum_probs=28.6

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      .++.|.+.+|+.+|||-.-..|.|+++|--.+
T Consensus       146 ~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~  177 (203)
T KOG0131|consen  146 YASFEASDAAIGSMNGQYLCNRPITVSYAFKK  177 (203)
T ss_pred             chhHHHHHHHHHHhccchhcCCceEEEEEEec
Confidence            46889999999999999999999999996544

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=83.13  E-value=1.2  Score=34.85  Aligned_cols=41  Identities=12%  Similarity=0.283  Sum_probs=33.1

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhhCcCcc
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAK   44 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~FP~a~   44 (63)
                      ..+.|+|..|+....|...|||.|.|.|=. +.|...|-+-.
T Consensus       172 y~~kedAarcIa~vDgs~~DGr~lkatYGT-TKYCtsYLRn~  212 (480)
T COG5175         172 YSTKEDAARCIAEVDGSLLDGRVLKATYGT-TKYCTSYLRNA  212 (480)
T ss_pred             ecchHHHHHHHHHhccccccCceEeeecCc-hHHHHHHHcCC
Confidence            457899999999999999999999999854 55666554433

>PLN03120 nucleic acid binding protein; Provisional

Probab=82.40  E-value=1.7  Score=31.80  Aligned_cols=29  Identities=21%  Similarity=0.040  Sum_probs=25.8

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.++++|..|+. |||.-+.||.|.++..+
T Consensus        50 F~d~eaAe~All-LnG~~l~gr~V~Vt~a~   78 (260)
T PLN03120         50 FKDPQGAETALL-LSGATIVDQSVTITPAE   78 (260)
T ss_pred             eCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence            578999999995 99999999999998744

>KOG0108|consensus

Probab=82.18  E-value=1.4  Score=34.14  Aligned_cols=38  Identities=34%  Similarity=0.406  Sum_probs=31.9

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhhC
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERF   40 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~F   40 (63)
                      +.+.|+|..|++.|||+=|.||.+.++|-....=+.+.
T Consensus        67 ~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~~~~~  104 (435)
T KOG0108|consen   67 FTDEETAERAIRNLNGAEFNGRKLRVNYASNRKNAERS  104 (435)
T ss_pred             cCchhhHHHHHHhcCCcccCCceEEeecccccchhHHH
Confidence            45789999999999999999999999997765554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	63
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	1e-13
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	9e-04

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A Length = 114

 Score = 58.9 bits (143), Expect = 1e-13
 Identities = 16/44 (36%), Positives = 20/44 (45%)

Query: 11  RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSN 54
            A   LHG WF  K++T  Y+    YH  FP +      L PS 
Sbjct: 70  AAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSR 113

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A Length = 105

 Score = 33.6 bits (77), Expect = 9e-04
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 10  RRAYRTLHGAWFNSKLVTVKYLRYERYHER 39
           ++A + L G  F +++V  KY   + YH R
Sbjct: 73  QKAMQGLTGRKFANRVVVTKYCDPDSYHRR 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	63
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	99.81
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	99.2
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.19
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.18
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.03
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	98.68
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	98.04
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	97.62
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	97.56
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	97.53
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	97.49
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	97.48
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	97.47
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	97.46
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	97.46
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	97.44
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	97.41
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	97.41
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	97.4
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	97.39
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	97.39
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	97.36
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	97.36
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	97.35
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	97.31
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	97.29
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	97.29
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	97.28
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	97.28
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	97.28
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	97.28
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	97.27
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	97.27
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	97.27
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	97.26
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	97.22
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	97.21
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	97.21
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	97.2
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	97.2
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	97.19
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	97.18
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	97.17
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	97.17
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	97.17
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	97.17
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	97.16
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	97.16
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	97.16
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	97.15
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	97.15
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	97.14
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	97.14
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	97.14
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	97.13
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	97.13
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	97.13
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	97.13
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	97.12
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	97.12
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	97.12
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	97.12
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	97.12
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	97.11
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	97.1
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	97.1
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	97.1
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	97.09
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	97.08
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	97.08
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	97.07
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	97.06
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	97.06
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	97.06
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	97.05
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	97.04
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	97.04
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	97.04
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	97.03
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	97.03
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	97.03
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	97.03
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	97.02
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	97.02
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	97.01
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	97.01
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	97.01
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	97.01
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	97.0
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	96.96
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	96.96
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	96.93
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	96.92
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	96.89
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	96.88
1x5p_A	97	Negative elongation factor E; structure genomics,	96.88
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	96.86
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	96.85
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	96.85
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	96.83
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	96.81
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	96.81
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	96.77
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	96.76
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	96.75
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	96.75
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	96.74
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	96.73
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	96.73
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	96.71
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	96.7
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	96.68
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	96.65
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	96.64
2div_A	99	TRNA selenocysteine associated protein; structural	96.63
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	96.63
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	96.59
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	96.58
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	96.57
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	96.57
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	96.57
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	96.55
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	96.55
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	96.54
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	96.52
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	96.51
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	96.5
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	96.48
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	96.44
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	96.42
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	96.41
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	96.38
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	96.38
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	96.37
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	96.36
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	96.35
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	95.35
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	96.35
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	96.33
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	96.31
1x5o_A	114	RNA binding motif, single-stranded interacting pro	96.29
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	96.29
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	96.28
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	96.25
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	96.24
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	96.24
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	96.18
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	96.16
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	96.13
1x4e_A	85	RNA binding motif, single-stranded interacting pro	96.09
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	96.06
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	96.06
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	96.03
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	95.96
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	95.94
2dis_A	109	Unnamed protein product; structural genomics, RRM	95.94
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	95.91
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	95.91
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	95.9
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	95.9
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	95.9
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	95.89
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	95.84
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	95.73
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	95.62
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	95.57
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	95.56
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	95.48
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	95.4
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	95.35
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	95.33
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	95.28
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	95.23
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	95.22
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	94.91
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	94.91
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	94.87
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	94.8
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	94.78
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	94.68
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	94.66
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	94.58
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	94.54
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	94.51
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	94.34
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	94.23
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	93.96
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	93.1
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	93.05
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	92.71
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	92.52
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	92.34
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	92.18
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	91.94
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	91.93
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	91.91
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	91.59
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	91.07
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	90.74
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	90.58
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	88.36
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	86.15
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	85.36
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	82.24
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	80.61
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	80.55

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=99.81  E-value=1.2e-20  Score=118.18  Aligned_cols=54  Identities=30%  Similarity=0.522  Sum_probs=52.2

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhhCcCcccCCcccccCCc
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSND   55 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~FP~a~~a~~pL~ps~~   55 (63)
                      ++.+.++|.+|++.||||||+||.|.|+|.+++.|+++||++.++++||+|||.
T Consensus        61 ~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~~fp~a~~~~~~l~p~~~  114 (114)
T 3s6e_A           61 KCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR  114 (114)
T ss_dssp             ECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHHHCGGGSSCCSCCCCSCC
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHHhCccccccCccCCCCCC
Confidence            578999999999999999999999999999999999999999999999999984

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=99.20  E-value=8e-12  Score=78.14  Aligned_cols=38  Identities=21%  Similarity=0.387  Sum_probs=35.6

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER   39 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~   39 (63)
                      ++.++++|.+|++.||||||+||.|.|+|.+.+.|+..
T Consensus        77 ~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~f~~~  114 (118)
T 3ue2_A           77 EFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNS  114 (118)
T ss_dssp             EESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHTT
T ss_pred             EECCHHHHHHHHHHHCCCEECCcEEEEEEcChHhcccc
Confidence            47899999999999999999999999999999999864

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.19  E-value=8.9e-12  Score=81.77  Aligned_cols=38  Identities=21%  Similarity=0.387  Sum_probs=36.1

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER   39 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~   39 (63)
                      ++.+.++|.+|++.||||||+||.|+|+|+++++|+.+
T Consensus       181 ~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f~~~  218 (222)
T 3dxb_A          181 EFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNS  218 (222)
T ss_dssp             EESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHHHTT
T ss_pred             EECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHhhhc
Confidence            46899999999999999999999999999999999986

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.18  E-value=1.2e-11  Score=75.27  Aligned_cols=38  Identities=26%  Similarity=0.378  Sum_probs=35.6

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER   39 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~   39 (63)
                      ++.++++|.+|++.||||||+||.|.|+|.+.+.|+.+
T Consensus        65 ~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f~~~  102 (105)
T 3v4m_A           65 EFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR  102 (105)
T ss_dssp             EESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHTT
T ss_pred             EECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHHhhc
Confidence            46899999999999999999999999999999999864

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.03  E-value=1.3e-10  Score=70.90  Aligned_cols=38  Identities=16%  Similarity=0.295  Sum_probs=35.6

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER   39 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~   39 (63)
                      ++.+.++|.+|++.||||||+||.|.++|.+.+.|..+
T Consensus        62 ~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~~f~~~   99 (105)
T 2pe8_A           62 EFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVL   99 (105)
T ss_dssp             EESSHHHHHHHHHHHTTCEETTEECEEEECCHHHHHTT
T ss_pred             EECCHHHHHHHHHHHCCCEECCcEEEEEEcCHHHhhhh
Confidence            46899999999999999999999999999999999875

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=98.68  E-value=6e-09  Score=63.01  Aligned_cols=31  Identities=19%  Similarity=0.261  Sum_probs=29.0

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.||||||+||.|.++|.|
T Consensus        74 ~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp  104 (104)
T 1jmt_A           74 KFRREEDAEKAVIDLNNRWFNGQPIHAELSP  104 (104)
T ss_dssp             EESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred             EECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence            4679999999999999999999999999987

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.04  E-value=1.6e-06  Score=51.82  Aligned_cols=32  Identities=22%  Similarity=0.306  Sum_probs=29.1

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||++|+||.|.++|...
T Consensus        70 ~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~  101 (112)
T 2dit_A           70 SFRDPEEADYCIQTLDGRWFGGRQITAQAWDG  101 (112)
T ss_dssp             ECSCHHHHHHHHHHSTTCEETTEECEEEECCS
T ss_pred             EECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence            46789999999999999999999999999644

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.62  E-value=4.7e-05  Score=45.51  Aligned_cols=37  Identities=14%  Similarity=0.134  Sum_probs=33.2

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER   39 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~   39 (63)
                      +.+.++|.+|++.|||..|+||.|.++|.+...|...
T Consensus        53 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~   89 (111)
T 1whx_A           53 FLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAA   89 (111)
T ss_dssp             ESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTTCCC
T ss_pred             eCCHHHHHHHHHHhCCCEECCeEEEEEECCCCccCCC
Confidence            5789999999999999999999999999998776543

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=97.56  E-value=7.4e-05  Score=45.86  Aligned_cols=31  Identities=13%  Similarity=0.121  Sum_probs=28.6

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||++++||.|.++|..
T Consensus       142 ~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~  172 (175)
T 1fje_B          142 EFKSEADAEKNLEEKQGAEIDGRSVSLYYTG  172 (175)
T ss_dssp             ECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred             EECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence            4679999999999999999999999999864

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=97.53  E-value=7.4e-05  Score=41.52  Aligned_cols=30  Identities=10%  Similarity=-0.037  Sum_probs=27.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++.
T Consensus        55 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   84 (85)
T 3mdf_A           55 EFELAEDAAAAIDNMNESELFGRTIRVNLA   84 (85)
T ss_dssp             EESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             EECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence            367899999999999999999999999874

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=97.49  E-value=8.1e-05  Score=43.87  Aligned_cols=30  Identities=37%  Similarity=0.453  Sum_probs=27.7

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++.|||..++||.|.++|..
T Consensus        68 f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak   97 (99)
T 4fxv_A           68 YVTAKDAERAINTLNGLRLQSKTIKVSYAR   97 (99)
T ss_dssp             ESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             ECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            578999999999999999999999999863

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=97.48  E-value=5.6e-05  Score=45.39  Aligned_cols=30  Identities=10%  Similarity=0.251  Sum_probs=27.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      .+.+.++|.+|++.|||+.++||.|.++|.
T Consensus       135 ~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a  164 (166)
T 3md3_A          135 SFTSQDDAQNAMDSMQGQDLNGRPLRINWA  164 (166)
T ss_dssp             EESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred             EeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence            367899999999999999999999999985

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=97.47  E-value=9.5e-05  Score=41.18  Aligned_cols=31  Identities=10%  Similarity=0.145  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..++||.|.+++..
T Consensus        53 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   83 (88)
T 4a8x_A           53 EFENPDEAEKALKHMDGGQIDGQEITATAVL   83 (88)
T ss_dssp             EESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             EEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence            3678999999999999999999999999874

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=97.46  E-value=0.0001  Score=40.78  Aligned_cols=31  Identities=10%  Similarity=0.209  Sum_probs=28.3

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      +.+.++|.+|++.|||..++||.|.+++...
T Consensus        50 f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~   80 (83)
T 3md1_A           50 FTSQDDAQNAMDSMQGQDLNGRPLRINWAAK   80 (83)
T ss_dssp             ESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             ECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence            6789999999999999999999999998653

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.46  E-value=0.00012  Score=42.12  Aligned_cols=32  Identities=9%  Similarity=-0.039  Sum_probs=29.1

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++...
T Consensus        60 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   91 (102)
T 2cqb_A           60 EFELAEDAAAAIDNMNESELFGRTIRVNLAKP   91 (102)
T ss_dssp             CCSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             EECCHHHHHHHHHHhCCCEECCcEEEEEeCCC
Confidence            47899999999999999999999999998653

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.44  E-value=0.0001  Score=41.70  Aligned_cols=31  Identities=10%  Similarity=0.013  Sum_probs=28.0

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..|+||.|.++|..
T Consensus        63 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   93 (95)
T 2cqc_A           63 YFENVDDAKEAKERANGMELDGRRIRVSGPS   93 (95)
T ss_dssp             EESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence            3678999999999999999999999999853

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.41  E-value=0.0001  Score=43.71  Aligned_cols=31  Identities=10%  Similarity=0.063  Sum_probs=28.4

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      +.+.++|.+|++.|||..|+||.|.+++...
T Consensus        70 f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~  100 (111)
T 2cpi_A           70 YIRSEDALRAIQCVNNVVVDGRTLKASLGTT  100 (111)
T ss_dssp             ESSHHHHHHHHHHHTTEEETTEEEEEESCCC
T ss_pred             ECcHHHHHHHHHHhCCCEECCEEEEEEeccc
Confidence            5789999999999999999999999998653

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=97.41  E-value=0.00013  Score=43.88  Aligned_cols=37  Identities=5%  Similarity=-0.009  Sum_probs=32.1

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER   39 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~   39 (63)
                      +.+.++|.+|++.|||..++||.|.+++.+...=+.+
T Consensus        55 f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~~~~~   91 (110)
T 3s8s_A           55 FTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQQRMK   91 (110)
T ss_dssp             ESSHHHHHHHHHHHTTCEETTEECEEEECSTTHHHHH
T ss_pred             ECCHHHHHHHHHHhCCCEECCeEEEEEECCCCcHHHH
Confidence            5789999999999999999999999999876554443

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.40  E-value=0.00013  Score=41.34  Aligned_cols=29  Identities=3%  Similarity=0.108  Sum_probs=27.1

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      +.+.++|.+|++.|||..|+||.|.++|.
T Consensus        65 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   93 (94)
T 2e5h_A           65 FLDKDSAQNCTRAINNKQLFGRVIKASIA   93 (94)
T ss_dssp             ESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred             ECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence            57899999999999999999999999984

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.39  E-value=0.00017  Score=41.52  Aligned_cols=32  Identities=9%  Similarity=0.101  Sum_probs=29.1

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++...
T Consensus        60 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   91 (102)
T 1x5s_A           60 TFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK   91 (102)
T ss_dssp             ECSSHHHHHHHHHHHTTCCTTSCCCEEEEEEC
T ss_pred             EECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            46899999999999999999999999999753

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=97.39  E-value=0.00015  Score=41.10  Aligned_cols=34  Identities=18%  Similarity=0.155  Sum_probs=30.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYER   35 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~   35 (63)
                      .+.+.++|.+|++.|||.-|+||.|.+++.+...
T Consensus        46 ~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~   79 (88)
T 1wg1_A           46 TLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA   79 (88)
T ss_dssp             CCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred             EECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence            4678999999999999999999999999976543

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=97.36  E-value=0.00016  Score=40.27  Aligned_cols=31  Identities=10%  Similarity=0.276  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..++||.|.+++..
T Consensus        54 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   84 (87)
T 3bs9_A           54 SFFNKWDAENAIQQMGGQWLGGRQIRTNWAT   84 (87)
T ss_dssp             EESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             EECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence            3678999999999999999999999999864

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=97.36  E-value=8.3e-05  Score=46.78  Aligned_cols=33  Identities=6%  Similarity=-0.116  Sum_probs=29.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      .+.+.++|.+|++.|||+.|+||.|.++|....
T Consensus       173 ~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~  205 (216)
T 2qfj_A          173 EYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP  205 (216)
T ss_dssp             EESSHHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred             EecCHHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence            467899999999999999999999999986543

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=97.35  E-value=6e-05  Score=45.90  Aligned_cols=30  Identities=20%  Similarity=0.152  Sum_probs=27.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      .+.+.++|.+|++.|||.+|+||.|.++|.
T Consensus       142 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A  171 (172)
T 2g4b_A          142 EYVDINVTDQAIAGLNGMQLGDKKLLVQRA  171 (172)
T ss_dssp             EESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             EeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence            357899999999999999999999999874

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.31  E-value=0.0002  Score=41.35  Aligned_cols=32  Identities=16%  Similarity=0.088  Sum_probs=29.0

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+|+.|.++|...
T Consensus        61 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   92 (103)
T 2d9p_A           61 CFSSPEEATKAVTEMNGRIVATKPLYVALAQR   92 (103)
T ss_dssp             EESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred             EECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence            36789999999999999999999999999754

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=97.29  E-value=0.00022  Score=41.29  Aligned_cols=31  Identities=6%  Similarity=0.110  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..++||.|.++|..
T Consensus        76 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~  106 (107)
T 3ulh_A           76 HFERKADALKAMKQYNGVPLDGRPMNIQLVT  106 (107)
T ss_dssp             EESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             EECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence            3678999999999999999999999999864

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=97.29  E-value=0.00021  Score=40.90  Aligned_cols=33  Identities=21%  Similarity=0.244  Sum_probs=29.7

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechhh
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYER   35 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~   35 (63)
                      +.+.++|.+|++.|||..|+||.|.++|.....
T Consensus        51 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~   83 (96)
T 2x1f_A           51 FRDLESSASAVRNLNGYQLGSRFLKCGYSSNSD   83 (96)
T ss_dssp             ESSHHHHHHHHHHHTTCEETTEECEEEECSCSS
T ss_pred             ECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCC
Confidence            578999999999999999999999999976543

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.28  E-value=0.00021  Score=41.08  Aligned_cols=34  Identities=24%  Similarity=0.238  Sum_probs=30.0

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYER   35 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~   35 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++.....
T Consensus        56 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   89 (104)
T 1p1t_A           56 EYQDQETALSAMRNLNGREFSGRALRVDNAASEK   89 (104)
T ss_dssp             ECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred             EECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence            4689999999999999999999999999976443

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=97.28  E-value=0.00026  Score=40.66  Aligned_cols=30  Identities=13%  Similarity=0.109  Sum_probs=27.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++.
T Consensus        69 ~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A   98 (99)
T 2la6_A           69 SFDDPPSAKAAIDWFDGKEFSGNPIKVSFA   98 (99)
T ss_dssp             EBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred             EECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence            367899999999999999999999999874

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.28  E-value=0.00023  Score=40.67  Aligned_cols=32  Identities=19%  Similarity=0.200  Sum_probs=28.9

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      +.+.++|.+|++.|||..|+||.|.+++....
T Consensus        57 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   88 (99)
T 1whw_A           57 FMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK   88 (99)
T ss_dssp             ESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred             ECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence            57899999999999999999999999987543

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.28  E-value=0.00024  Score=40.95  Aligned_cols=30  Identities=20%  Similarity=0.105  Sum_probs=27.7

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++.|||..++||.|.+++..
T Consensus        59 f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~   88 (96)
T 2dgx_A           59 MENLQDAIGAVNSLHRYKIGSKKILVSLAT   88 (96)
T ss_dssp             ESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             ECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence            578999999999999999999999999864

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.27  E-value=0.00023  Score=40.34  Aligned_cols=32  Identities=22%  Similarity=0.122  Sum_probs=28.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..++||.|.+++...
T Consensus        53 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   84 (95)
T 2dnz_A           53 TFSDSECARRALEQLNGFELAGRPMRVGHVTE   84 (95)
T ss_dssp             EESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred             EECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence            35789999999999999999999999998643

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.27  E-value=0.00028  Score=40.56  Aligned_cols=31  Identities=16%  Similarity=0.152  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++..
T Consensus        62 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   92 (97)
T 2e5j_A           62 HYPDSAAAQQAVSCLQGLRLGTDTLRVALAR   92 (97)
T ss_dssp             ECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred             EECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence            3678999999999999999999999999864

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=97.27  E-value=0.00015  Score=43.80  Aligned_cols=29  Identities=14%  Similarity=0.115  Sum_probs=26.6

Q ss_pred             CCCCHHHHHHHHHHHhccccCC--ceeEEEE
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNS--KLVTVKY   30 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~G--R~I~Aey   30 (63)
                      .+.+.++|.+|++.|||+.|+|  +.|.++|
T Consensus       137 ~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~  167 (168)
T 1b7f_A          137 RYNKREEAQEAISALNNVIPEGGSQPLSVRL  167 (168)
T ss_dssp             EESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             EECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence            3578999999999999999988  9999987

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.26  E-value=0.00028  Score=40.56  Aligned_cols=31  Identities=13%  Similarity=0.140  Sum_probs=28.6

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..++||.|.++|..
T Consensus        60 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~   90 (102)
T 2fc8_A           60 DFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK   90 (102)
T ss_dssp             ECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence            3679999999999999999999999999964

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=97.22  E-value=0.00027  Score=42.10  Aligned_cols=31  Identities=13%  Similarity=0.171  Sum_probs=28.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..|+|+.|.++|..
T Consensus        70 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~  100 (126)
T 3ex7_B           70 EYETYKEAQAAMEGLNGQDLMGQPISVDWCF  100 (126)
T ss_dssp             EESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred             EECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence            3678999999999999999999999999874

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=97.21  E-value=0.00026  Score=42.42  Aligned_cols=29  Identities=21%  Similarity=0.150  Sum_probs=25.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCce--eEEEE
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKL--VTVKY   30 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~--I~Aey   30 (63)
                      .+.+.++|.+|++.|||++|+||.  |+++|
T Consensus       136 ~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~  166 (167)
T 1fxl_A          136 RFDKRIEAEEAIKGLNGQKPSGATEPITVKF  166 (167)
T ss_dssp             EESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             EeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence            357899999999999999999986  88776

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=97.21  E-value=0.00029  Score=40.03  Aligned_cols=32  Identities=19%  Similarity=0.198  Sum_probs=28.9

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+||.|.++|...
T Consensus        57 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   88 (97)
T 1nu4_A           57 IFKEVSSATNALRSMQGFPFYDKPMRIQYAKT   88 (97)
T ss_dssp             EESSHHHHHHHHHHHTTCEETTEECEEEECSS
T ss_pred             EeCCHHHHHHHHHHhCCCEECCcEEEEEEccC
Confidence            36789999999999999999999999998754

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=97.20  E-value=0.00025  Score=41.65  Aligned_cols=32  Identities=9%  Similarity=0.249  Sum_probs=28.9

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+||.|.++|...
T Consensus        63 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   94 (115)
T 2dgo_A           63 SFFNKWDAENAIQQMGGQWLGGRQIRTNWATR   94 (115)
T ss_dssp             EESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence            36789999999999999999999999999654

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.20  E-value=0.00032  Score=39.76  Aligned_cols=31  Identities=26%  Similarity=0.236  Sum_probs=28.7

Q ss_pred             CCCCHHHHHHHHHHHhc-cccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHG-AWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhG-RWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.||| ..++||.|.+++..
T Consensus        50 ~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~   81 (93)
T 2cqh_A           50 DYPDQNWAIRAIETLSGKVELHGKIMEVDYSV   81 (93)
T ss_dssp             CCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred             EECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence            47899999999999999 99999999999875

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=97.19  E-value=0.00025  Score=40.14  Aligned_cols=30  Identities=13%  Similarity=-0.026  Sum_probs=27.5

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++.|||..|+||.|.+++..
T Consensus        64 f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~   93 (95)
T 2ek1_A           64 FESRDEATAAVIDLNDRPIGSRKVKLSGPS   93 (95)
T ss_dssp             ESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             ECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence            578999999999999999999999998753

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=97.18  E-value=0.00017  Score=45.26  Aligned_cols=32  Identities=16%  Similarity=0.114  Sum_probs=29.1

Q ss_pred             CCCCHHHHHHHHHHHhccccC-CceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFN-SKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~-GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||+.++ ||.|.++|...
T Consensus       164 ~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~  196 (198)
T 1qm9_A          164 QMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS  196 (198)
T ss_dssp             ECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred             EeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence            468999999999999999999 99999999653

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=97.17  E-value=0.00019  Score=46.33  Aligned_cols=31  Identities=23%  Similarity=0.234  Sum_probs=28.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..++||.|.+++..
T Consensus       149 ~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~  179 (213)
T 4f02_A          149 HFETQEAAERAIEKMNGMLLNDRKVFVGRFK  179 (213)
T ss_dssp             EESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            4678999999999999999999999999864

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.17  E-value=0.0003  Score=39.91  Aligned_cols=31  Identities=16%  Similarity=0.359  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..++||.|.+++..
T Consensus        54 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   84 (96)
T 1x5t_A           54 NFASFDASDAAIEAMNGQYLCNRPITVSYAF   84 (96)
T ss_dssp             EBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred             EECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence            3679999999999999999999999999964

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.17  E-value=0.00029  Score=40.62  Aligned_cols=32  Identities=16%  Similarity=0.198  Sum_probs=28.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+||.|.++|...
T Consensus        63 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   94 (103)
T 2cq0_A           63 SFHRREDAARAIAGVSGFGYDHLILNVEWAKP   94 (103)
T ss_dssp             EESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred             EECCHHHHHHHHHHcCCCeeCCcEEEEEECCC
Confidence            36789999999999999999999999999643

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.17  E-value=0.00033  Score=40.42  Aligned_cols=31  Identities=19%  Similarity=0.171  Sum_probs=28.3

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      +.+.++|.+|++.|||..|+||.|.+++...
T Consensus        62 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   92 (103)
T 2cq3_A           62 FENSADADRAREKLHGTVVEGRKIEVNNATA   92 (103)
T ss_dssp             ESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred             ECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence            5789999999999999999999999998643

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.16  E-value=0.00034  Score=39.79  Aligned_cols=32  Identities=22%  Similarity=0.281  Sum_probs=29.1

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      +.+.++|.+|++.|||..++||.|.++|....
T Consensus        61 f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~   92 (96)
T 2e44_A           61 YSSKDQARQALDKLNGFQLENFTLKVAYIPDE   92 (96)
T ss_dssp             ESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred             ECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence            57899999999999999999999999997653

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.16  E-value=0.00038  Score=39.48  Aligned_cols=31  Identities=23%  Similarity=0.127  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..|.||.|.+++..
T Consensus        50 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   80 (92)
T 2dgt_A           50 HMERAEDAVEAIRGLDNTEFQGKRMHVQLST   80 (92)
T ss_dssp             EESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred             EECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence            3678999999999999999999999999874

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.16  E-value=0.00039  Score=39.95  Aligned_cols=32  Identities=6%  Similarity=0.087  Sum_probs=29.0

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|.||.|.+++...
T Consensus        59 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   90 (101)
T 2fc9_A           59 EFASFEDAKEALNSCNKREIEGRAIRLELQGP   90 (101)
T ss_dssp             ECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred             EECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence            36799999999999999999999999999654

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=97.15  E-value=0.00023  Score=40.49  Aligned_cols=33  Identities=9%  Similarity=-0.088  Sum_probs=27.1

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      .+.+.++|.+|++.|||.-|+||.|.+++....
T Consensus        51 ~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~   83 (90)
T 3p5t_L           51 GVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL   83 (90)
T ss_dssp             CC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred             EECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence            467999999999999999999999999886543

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.15  E-value=0.00039  Score=40.09  Aligned_cols=32  Identities=16%  Similarity=0.087  Sum_probs=29.0

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..+.||.|.++|...
T Consensus        61 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   92 (103)
T 2cqi_A           61 EFYEHRDAAAALAAMNGRKILGKEVKVNWATT   92 (103)
T ss_dssp             EESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             EECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence            36789999999999999999999999999654

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=97.14  E-value=0.00035  Score=41.10  Aligned_cols=32  Identities=16%  Similarity=0.082  Sum_probs=29.0

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+||.|.++|...
T Consensus        73 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~  104 (115)
T 2cpz_A           73 SYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS  104 (115)
T ss_dssp             ECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             EECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence            46899999999999999999999999998653

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=97.14  E-value=0.00054  Score=40.18  Aligned_cols=35  Identities=17%  Similarity=0.145  Sum_probs=31.1

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechhhHH
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYH   37 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~   37 (63)
                      +.+.++|.+|++.|||..|+||.|.++|.....-.
T Consensus        54 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~   88 (115)
T 3lqv_A           54 YEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF   88 (115)
T ss_dssp             ESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT
T ss_pred             ECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh
Confidence            57899999999999999999999999998765443

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.14  E-value=0.00025  Score=40.47  Aligned_cols=32  Identities=16%  Similarity=0.158  Sum_probs=28.6

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++...
T Consensus        56 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   87 (98)
T 2cpf_A           56 EYKKPEQAQKALKQLQGHTVDGHKLEVRISER   87 (98)
T ss_dssp             EESSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred             EECCHHHHHHHHHHhCCCeeCCeEEEEEEccC
Confidence            36789999999999999999999999998643

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.13  E-value=0.00038  Score=39.37  Aligned_cols=32  Identities=16%  Similarity=0.063  Sum_probs=28.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++...
T Consensus        49 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   80 (90)
T 2dnp_A           49 HMEKEADAKAAIAQLNGKEVKGKRINVELSTK   80 (90)
T ss_dssp             EESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred             EECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence            35789999999999999999999999999643

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.13  E-value=0.00041  Score=40.03  Aligned_cols=32  Identities=9%  Similarity=0.288  Sum_probs=28.8

Q ss_pred             CCCCHHHHHHHHHHH-hccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTL-HGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~L-hGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.| ||..|+||.|.++|...
T Consensus        64 ~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~   96 (107)
T 2cph_A           64 DFITKQDAKKAFNALCHSTHLYGRRLVLEWADS   96 (107)
T ss_dssp             EESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred             EECCHHHHHHHHHHhccCCeECCCEEEEEeCCC
Confidence            357899999999999 99999999999999754

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.13  E-value=0.00034  Score=39.92  Aligned_cols=31  Identities=13%  Similarity=-0.019  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||.-|+||.|.+++..
T Consensus        63 ~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~   93 (98)
T 2cqp_A           63 AFESRDEATAAVIDLNDRPIGSRKVKLVLGS   93 (98)
T ss_dssp             EESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred             EECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence            3578999999999999999999999999864

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.13  E-value=0.00047  Score=39.53  Aligned_cols=31  Identities=10%  Similarity=0.087  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++..
T Consensus        64 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   94 (100)
T 2do4_A           64 EYENESQASQAVMKMDGMTIKENIIKVAISN   94 (100)
T ss_dssp             EESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            3678999999999999999999999999864

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=97.12  E-value=0.00041  Score=40.07  Aligned_cols=31  Identities=13%  Similarity=0.171  Sum_probs=28.1

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++..
T Consensus        71 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~  101 (106)
T 1p27_B           71 EYETYKEAQAAMEGLNGQDLMGQPISVDWCF  101 (106)
T ss_dssp             EESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred             EECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence            3678999999999999999999999999853

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.12  E-value=0.00032  Score=40.46  Aligned_cols=32  Identities=13%  Similarity=-0.025  Sum_probs=28.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++...
T Consensus        63 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   94 (105)
T 1x5u_A           63 EFLSEEDADYAIKIMDMIKLYGKPIRVNKASA   94 (105)
T ss_dssp             EESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred             EECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence            35789999999999999999999999998643

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.12  E-value=0.00037  Score=40.80  Aligned_cols=32  Identities=16%  Similarity=0.072  Sum_probs=28.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|.||.|.+++...
T Consensus        71 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  102 (113)
T 2cpe_A           71 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLARK  102 (113)
T ss_dssp             EBSSHHHHHHHHHHHTTCEETTEECEEECSSC
T ss_pred             EECCHHHHHHHHHHcCCCccCCCEEEEEECCC
Confidence            36799999999999999999999999998653

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=97.12  E-value=0.00046  Score=39.66  Aligned_cols=33  Identities=18%  Similarity=-0.007  Sum_probs=29.9

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      .+.+.++|.+|++.|||..++|+.|.+++....
T Consensus        43 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   75 (101)
T 2hvz_A           43 EFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM   75 (101)
T ss_dssp             ECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred             EECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence            468999999999999999999999999997654

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=97.12  E-value=0.00042  Score=40.39  Aligned_cols=31  Identities=6%  Similarity=0.168  Sum_probs=28.2

Q ss_pred             CCCHHHHHHHHHHHhccccCC-ceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNS-KLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~G-R~I~Aey~p~   33 (63)
                      +.+.++|.+|++.|||..|+| |.|.+++...
T Consensus        61 f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~   92 (100)
T 3ns6_A           61 CGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD   92 (100)
T ss_dssp             ESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred             ECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence            578999999999999999999 9999998743

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.11  E-value=0.00036  Score=40.11  Aligned_cols=31  Identities=16%  Similarity=0.191  Sum_probs=28.3

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      +.+.++|.+|++.|||..|+||.|.++|...
T Consensus        58 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   88 (99)
T 2cpd_A           58 FSNREDAVEAMKALNGKVLDGSPIEVTLAKP   88 (99)
T ss_dssp             ESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred             eCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence            5789999999999999999999999998643

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=97.10  E-value=0.00027  Score=40.04  Aligned_cols=31  Identities=16%  Similarity=-0.027  Sum_probs=27.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++..
T Consensus        63 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   93 (95)
T 2ywk_A           63 CFKHPESVSYAIALLNGIRLYGRPINVSGPS   93 (95)
T ss_dssp             EESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             EECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence            3578999999999999999999999998753

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.10  E-value=0.0003  Score=43.60  Aligned_cols=33  Identities=9%  Similarity=0.090  Sum_probs=29.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      .+.++|+|..|++.|||..+.||.|++.|-+..
T Consensus        52 ~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~   84 (96)
T 2diu_A           52 RFINQDSAERAQKRMENEDVFGNRIIVSFTPKN   84 (96)
T ss_dssp             EESSHHHHHHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred             EECCHHHHHHHHHHhcCCccCCceEEEEecCCC
Confidence            467999999999999999999999999997643

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.10  E-value=0.00039  Score=39.95  Aligned_cols=32  Identities=13%  Similarity=-0.041  Sum_probs=28.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+||.|.++|...
T Consensus        57 ~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~   88 (99)
T 2cpj_A           57 RLETRTLAEIAKVELDNMPLRGKQLRVRFACH   88 (99)
T ss_dssp             ECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred             EECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence            36789999999999999999999999999643

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=97.09  E-value=0.00036  Score=42.53  Aligned_cols=34  Identities=9%  Similarity=0.020  Sum_probs=30.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYER   35 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~   35 (63)
                      ++.+.++|.+|++.|||.-+.||.|.|++-...+
T Consensus        49 ey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~~   82 (89)
T 2wbr_A           49 KYTTREEANKAQMALNNCVLANTTIFAESPSENE   82 (89)
T ss_dssp             EESSHHHHHHHHHHHTTEEETTEEEEEECCCHHH
T ss_pred             EECCHHHHHHHHHHhcCCEECCcEEEEEECCHHH
Confidence            4679999999999999999999999999986554

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=97.08  E-value=0.0005  Score=39.82  Aligned_cols=32  Identities=6%  Similarity=0.088  Sum_probs=29.1

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..++|+.|.+++...
T Consensus        51 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   82 (103)
T 2dgu_A           51 HFDERDGAVKAMEEMNGKDLEGENIEIVFAKP   82 (103)
T ss_dssp             EESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             EeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence            36789999999999999999999999999754

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.08  E-value=0.00036  Score=40.70  Aligned_cols=32  Identities=13%  Similarity=0.004  Sum_probs=28.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+||.|.++|...
T Consensus        67 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   98 (109)
T 1x4a_A           67 EFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS   98 (109)
T ss_dssp             EESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             EECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence            35789999999999999999999999998644

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=97.07  E-value=0.00046  Score=45.63  Aligned_cols=35  Identities=11%  Similarity=-0.024  Sum_probs=31.2

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhH
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERY   36 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y   36 (63)
                      .+.+.++|.+|++.|||++|+||.|.+.|......
T Consensus       232 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~  266 (284)
T 3smz_A          232 EYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP  266 (284)
T ss_dssp             ECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred             EeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence            46899999999999999999999999999876543

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=97.06  E-value=0.00047  Score=40.06  Aligned_cols=30  Identities=10%  Similarity=-0.189  Sum_probs=27.8

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++.|||..|+||.|.++|..
T Consensus        64 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~   93 (97)
T 2xnq_A           64 FDNPQSVRDAIEXESQEMNFGKKLILEVSS   93 (97)
T ss_dssp             ESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred             ECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence            578999999999999999999999999864

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=97.06  E-value=0.00049  Score=39.11  Aligned_cols=31  Identities=13%  Similarity=0.121  Sum_probs=28.2

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||.-++||.|.+++..
T Consensus        59 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   89 (96)
T 1fjc_A           59 EFKSEADAEKNLEEKQGAEIDGRSVSLYYTG   89 (96)
T ss_dssp             EESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred             EECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence            3678999999999999999999999999864

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=97.06  E-value=0.00038  Score=43.31  Aligned_cols=35  Identities=9%  Similarity=0.099  Sum_probs=30.5

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechhhHH
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYH   37 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~   37 (63)
                      +.+.++|..|++.|||..|.||.|.++|.......
T Consensus        79 F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~  113 (127)
T 2a3j_A           79 FATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQ  113 (127)
T ss_dssp             ESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHH
T ss_pred             ECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchh
Confidence            57899999999999999999999999997654433

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=97.05  E-value=0.0003  Score=39.62  Aligned_cols=31  Identities=23%  Similarity=0.216  Sum_probs=28.1

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++..
T Consensus        54 ~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~   84 (92)
T 2dgv_A           54 KFESPEVAERACRMMNGMKLSGREIDVRIDR   84 (92)
T ss_dssp             EESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred             EECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence            3578999999999999999999999998864

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=97.04  E-value=0.00049  Score=41.28  Aligned_cols=33  Identities=12%  Similarity=0.123  Sum_probs=29.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++....
T Consensus        54 ~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   86 (116)
T 2fy1_A           54 TFENPADAKNAAKDMNGKSLHGKAIKVEQAKKP   86 (116)
T ss_dssp             ECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCS
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence            367999999999999999999999999997643

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=97.04  E-value=0.00049  Score=41.02  Aligned_cols=31  Identities=23%  Similarity=0.234  Sum_probs=28.2

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.|+|.+|++.|||..++||.|.+++..
T Consensus        51 ~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~   81 (115)
T 4f25_A           51 HFETQEAAERAIEKMNGMLLNDRKVFVGRFK   81 (115)
T ss_dssp             EESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred             EECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence            3678999999999999999999999999864

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.04  E-value=0.00051  Score=40.12  Aligned_cols=32  Identities=13%  Similarity=-0.015  Sum_probs=28.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++...
T Consensus        62 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   93 (114)
T 2do0_A           62 TFEQSIEAVQAISMFNGQLLFDRPMHVKMDER   93 (114)
T ss_dssp             EESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred             EECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence            35789999999999999999999999999643

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=97.03  E-value=0.00054  Score=41.42  Aligned_cols=32  Identities=16%  Similarity=0.000  Sum_probs=28.9

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..++||.|.+++...
T Consensus        90 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  121 (139)
T 1u6f_A           90 KFQSGSSAQQAIAGLNGFNILNKRLKVALAAS  121 (139)
T ss_dssp             EESSHHHHHHHHHHTTTEECSSCEEEEEESSC
T ss_pred             EECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            36789999999999999999999999998654

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=97.03  E-value=0.00048  Score=40.93  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=28.9

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+||.|.++|...
T Consensus        71 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  102 (108)
T 2jvo_A           71 EFEEAESAAKAIEEVHGKSFANQPLEVVYSKL  102 (108)
T ss_dssp             ECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred             EECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence            36799999999999999999999999998654

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.03  E-value=0.00057  Score=39.98  Aligned_cols=32  Identities=13%  Similarity=0.125  Sum_probs=29.0

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..++||.|.++|...
T Consensus        73 ~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~  104 (115)
T 2cpx_A           73 TFPNKEIAWQALHLVNGYKLYGKILVIEFGKN  104 (115)
T ss_dssp             ECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred             EECCHHHHHHHHHHhCCCEeCCcEEEEEEccC
Confidence            36799999999999999999999999999654

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=97.03  E-value=0.00043  Score=41.06  Aligned_cols=31  Identities=16%  Similarity=0.115  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++..
T Consensus        74 ~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~  104 (108)
T 2jrs_A           74 TFSDSECAKKALEQLNGFELAGRPMKVGHVT  104 (108)
T ss_dssp             EESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred             EECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence            3678999999999999999999999999864

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=97.02  E-value=0.00068  Score=40.44  Aligned_cols=32  Identities=6%  Similarity=0.091  Sum_probs=29.2

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++...
T Consensus        82 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  113 (124)
T 2kt5_A           82 HFERRADALKAMKQYKGVPLDGRPMDIQLVAS  113 (124)
T ss_dssp             EESSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred             EECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence            35789999999999999999999999999764

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.02  E-value=0.00027  Score=40.77  Aligned_cols=32  Identities=19%  Similarity=0.232  Sum_probs=28.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++...
T Consensus        61 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   92 (103)
T 2dnm_A           61 RFHDRRDAQDAEAAMDGAELDGRELRVQVARY   92 (103)
T ss_dssp             EESSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred             EECCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence            35788999999999999999999999999753

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.01  E-value=0.00052  Score=38.77  Aligned_cols=32  Identities=16%  Similarity=0.041  Sum_probs=28.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||.-++||.|.+++...
T Consensus        48 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   79 (90)
T 2dnq_A           48 HIEDKTAAEDAIRNLHHYKLHGVNINVEASKN   79 (90)
T ss_dssp             EESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred             EECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence            36789999999999999999999999998643

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=97.01  E-value=0.00056  Score=39.85  Aligned_cols=31  Identities=16%  Similarity=0.101  Sum_probs=28.2

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..++||.|.++|..
T Consensus        74 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~  104 (110)
T 1oo0_B           74 EYETHKQALAAKEALNGAEIMGQTIQVDWCF  104 (110)
T ss_dssp             EESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred             EECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence            3678999999999999999999999999864

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=97.01  E-value=0.00037  Score=46.01  Aligned_cols=30  Identities=10%  Similarity=0.045  Sum_probs=28.0

Q ss_pred             CCCCHHHHHHHHHHHhccccC-CceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFN-SKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~-GR~I~Aey~   31 (63)
                      .+.+.++|.+|++.|||+.|+ ||.|.++|.
T Consensus       250 ~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a  280 (282)
T 3pgw_A          250 EFDNEVQAGAARDALQGFKITQNNAMKISFA  280 (282)
T ss_pred             EeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence            468999999999999999999 999999985

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.01  E-value=0.00045  Score=40.80  Aligned_cols=31  Identities=19%  Similarity=0.183  Sum_probs=28.2

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++..
T Consensus        75 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~  105 (109)
T 2err_A           75 TFENSADADRAREKLHGTVVEGRKIEVNNAT  105 (109)
T ss_dssp             ECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence            3678999999999999999999999999864

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.00  E-value=0.00048  Score=40.27  Aligned_cols=32  Identities=13%  Similarity=0.098  Sum_probs=28.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+||.|.++|...
T Consensus        67 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   98 (109)
T 1x4g_A           67 RFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE   98 (109)
T ss_dssp             EESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             EECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence            36789999999999999999999999998644

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=96.96  E-value=0.0003  Score=43.63  Aligned_cols=31  Identities=19%  Similarity=0.145  Sum_probs=28.0

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||.+|+||.|.++|..
T Consensus       162 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~  192 (198)
T 2yh0_A          162 EYVDINVTDQAIAGLNGMQLGDKKLLVQRAS  192 (198)
T ss_dssp             EESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred             EECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence            3578899999999999999999999999864

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=96.96  E-value=0.00048  Score=41.24  Aligned_cols=28  Identities=11%  Similarity=-0.016  Sum_probs=26.4

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKY   30 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey   30 (63)
                      +.+.++|.+|++.|||..|+||.|.++|
T Consensus       112 f~~~~~a~~A~~~l~g~~~~g~~l~v~~  139 (140)
T 2ku7_A          112 FELAEDAAAAIDNMNESELFGRTIRVNL  139 (140)
T ss_dssp             ESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred             ECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence            5789999999999999999999999986

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=96.93  E-value=0.0007  Score=41.30  Aligned_cols=30  Identities=20%  Similarity=0.058  Sum_probs=27.7

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++.|||.-|+||.|.+++..
T Consensus        74 F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~  103 (111)
T 2jvr_A           74 FPSEEILVEALERLNNIEFRGSVITVERDD  103 (111)
T ss_dssp             ESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred             ECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence            578999999999999999999999999864

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=96.92  E-value=0.00071  Score=39.98  Aligned_cols=31  Identities=10%  Similarity=0.110  Sum_probs=27.4

Q ss_pred             CCCCHHHHHHHHHHHhcc----ccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGA----WFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGR----WF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||.    .++||.|.++|-.
T Consensus        59 ~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak   93 (95)
T 2lkz_A           59 QLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK   93 (95)
T ss_dssp             ECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred             EECCHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence            367899999999999997    6999999999853

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=96.89  E-value=0.00091  Score=38.21  Aligned_cols=30  Identities=10%  Similarity=0.196  Sum_probs=27.8

Q ss_pred             CCCHHHHHHHHHHHhccccC--CceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFN--SKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~--GR~I~Aey~p   32 (63)
                      +.+.++|.+|++.|||.-++  ||.|.++|..
T Consensus        60 f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~   91 (97)
T 1why_A           60 YESLDAAQAACAKMRGFPLGGPDRRLRVDFAK   91 (97)
T ss_dssp             ESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred             ECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence            57899999999999999999  9999999864

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.88  E-value=0.00049  Score=38.19  Aligned_cols=30  Identities=13%  Similarity=0.013  Sum_probs=27.2

Q ss_pred             CCCCHHHHHHHHHHH-hccccCCceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTL-HGAWFNSKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~L-hGRWF~GR~I~Aey~   31 (63)
                      .+.+.++|.+|++.| ||..++|+.|.++|.
T Consensus        54 ~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a   84 (85)
T 2ytc_A           54 QFATRQAAEVAAEKSFNKLIVNGRRLNVKWG   84 (85)
T ss_dssp             EESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred             EECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence            357899999999999 999999999999874

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.88  E-value=0.00052  Score=39.35  Aligned_cols=32  Identities=22%  Similarity=0.174  Sum_probs=28.8

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      +.+.++|.+|++.|||.-|+||.|.++|....
T Consensus        56 f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~   87 (97)
T 1x5p_A           56 YEKMESADQAVAELNGTQVESVQLKVNIARKQ   87 (97)
T ss_dssp             ESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred             ECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence            57899999999999999999999999986543

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=96.86  E-value=0.00059  Score=44.44  Aligned_cols=32  Identities=16%  Similarity=0.114  Sum_probs=29.0

Q ss_pred             CCCCHHHHHHHHHHHhccccC-CceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFN-SKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~-GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||+.++ ||.|.++|...
T Consensus       195 ~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~  227 (229)
T 2adc_A          195 QMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS  227 (229)
T ss_dssp             EESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred             EECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence            467899999999999999999 99999999653

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=96.85  E-value=0.00058  Score=39.21  Aligned_cols=31  Identities=10%  Similarity=-0.170  Sum_probs=28.5

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      +.+.++|.+|++.|||..|.||.|.+++...
T Consensus        52 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   82 (96)
T 2kvi_A           52 FDNPQSVRDAIECESQEMNFGKKLILEVSSS   82 (96)
T ss_dssp             ESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred             ECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence            5789999999999999999999999999743

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=96.85  E-value=0.00091  Score=44.17  Aligned_cols=58  Identities=16%  Similarity=0.213  Sum_probs=38.1

Q ss_pred             CCCHHHHHHHHHHHhccccCC--ceeEEEEechhhHHhhCcC--cccCCcccccCCcccccc
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNS--KLVTVKYLRYERYHERFPQ--AKALVAPLKPSNDRRYSL   60 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~G--R~I~Aey~p~~~Y~~~FP~--a~~a~~pL~ps~~~~~s~   60 (63)
                      +.+.++|..|++.|||+-+.|  |.|.++|.......-++-+  +..-+.|-.|+.....++
T Consensus        91 F~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l~vk~nn~rsrDyt~p~lp~~~~~~~~  152 (164)
T 1sjr_A           91 YADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL  152 (164)
T ss_dssp             ESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSCCCCCCSSSEEESSCSCCCCCC-----
T ss_pred             ECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcccccccCCCCccccCCCCCCCCCCCCc
Confidence            578999999999999999955  9999999987754444432  233344444554444333

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=96.83  E-value=0.00031  Score=41.43  Aligned_cols=29  Identities=14%  Similarity=0.103  Sum_probs=26.7

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      +.+.++|.+|++.|||..|+||.|.++|-
T Consensus        89 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a  117 (118)
T 2khc_A           89 FDNPDSAQVAIKAMNGFQVGTKRLKVQLK  117 (118)
T ss_dssp             EESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred             ECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence            56889999999999999999999999874

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=96.81  E-value=0.0012  Score=40.23  Aligned_cols=31  Identities=19%  Similarity=0.246  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..|+||.|.++|..
T Consensus        98 ~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~  128 (143)
T 3egn_A           98 GLPNEKAAAKALKEANGYVLFGKPMVVQFAR  128 (143)
T ss_dssp             ECSSHHHHHHHHHHHTTBEETTEECEEEECC
T ss_pred             EeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence            3678999999999999999999999999874

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=96.81  E-value=0.0011  Score=38.25  Aligned_cols=31  Identities=19%  Similarity=0.060  Sum_probs=27.9

Q ss_pred             CCCHHHHHHHHHHHhcccc---CCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGAWF---NSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF---~GR~I~Aey~p~   33 (63)
                      +.+.++|.+|++.|||..+   .||.|.++|...
T Consensus        62 f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~   95 (106)
T 2dgp_A           62 YCERESALKAQSALHEQKTLPGMNRPIQVKPADS   95 (106)
T ss_dssp             ESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred             ECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence            5789999999999999987   999999998754

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=96.77  E-value=0.00025  Score=39.53  Aligned_cols=26  Identities=12%  Similarity=0.042  Sum_probs=23.8

Q ss_pred             CCCHHHHHHHHHHHhccccCCc-eeEE
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSK-LVTV   28 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR-~I~A   28 (63)
                      +.+.++|.+|++.|||..|+|| .|.+
T Consensus        54 f~~~~~A~~Ai~~lng~~~~g~~~l~V   80 (81)
T 2krb_A           54 YASPAHAVDAVKNADGYKLDKQHTFRV   80 (81)
T ss_dssp             ESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred             ECCHHHHHHHHHHhcCcccCCceeEEe
Confidence            5789999999999999999999 8864

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=96.76  E-value=0.0011  Score=38.05  Aligned_cols=30  Identities=13%  Similarity=0.052  Sum_probs=27.0

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++ |||..++||.|.+++..
T Consensus        64 ~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~   93 (101)
T 1fj7_A           64 DFESAEDLEKALE-LTGLKVFGNEIKLEKPK   93 (101)
T ss_dssp             EESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred             EECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence            3578999999999 99999999999999864

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=96.75  E-value=0.00055  Score=45.40  Aligned_cols=30  Identities=10%  Similarity=0.123  Sum_probs=27.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|+ .|||++|+||.|.+.|..
T Consensus       260 ~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~  289 (292)
T 2ghp_A          260 VFENKDSAERAL-QMNRSLLGNREISVSLAD  289 (292)
T ss_dssp             EESSHHHHHHHG-GGTTEEETTEEEEEEECC
T ss_pred             EeCCHHHHHHHH-HhcCCEECCcEEEEEEec
Confidence            367899999999 999999999999999864

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.75  E-value=0.0012  Score=37.12  Aligned_cols=31  Identities=10%  Similarity=0.119  Sum_probs=27.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++ |||.-++||.|.+++...
T Consensus        56 ~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~   86 (91)
T 2dgw_A           56 DFSNEEEVKQALK-CNREYMGGRYIEVFREKS   86 (91)
T ss_dssp             ECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred             EECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence            3679999999999 999999999999998653

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=96.74  E-value=0.00065  Score=41.68  Aligned_cols=32  Identities=9%  Similarity=0.071  Sum_probs=28.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+||.|.++|...
T Consensus        94 ~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~  125 (129)
T 2kxn_B           94 YFENVDDAKEAKERANGMELDGRRIRVDFSIT  125 (129)
T ss_dssp             EESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence            35789999999999999999999999988643

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=96.73  E-value=0.00081  Score=39.34  Aligned_cols=31  Identities=10%  Similarity=0.019  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||.-|+|+.|.+++..
T Consensus        68 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~   98 (110)
T 1wf1_A           68 QYSNERHARAAVLGENGRVLAGQTLDINMAG   98 (110)
T ss_dssp             ECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred             EECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence            3678999999999999999999999999964

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.71  E-value=0.0015  Score=39.18  Aligned_cols=37  Identities=5%  Similarity=-0.104  Sum_probs=32.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER   39 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~   39 (63)
                      .+.+.++|.+|++ |||..++||.|.+.+.....+...
T Consensus        67 ~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~~~~  103 (118)
T 2db1_A           67 ELESEDDVKLALK-KDRESMGHRYIEVFKSHRTEMDWV  103 (118)
T ss_dssp             EBSSHHHHHHHGG-GTTEEETTEEEEEEEECHHHHHHH
T ss_pred             EECCHHHHHHHHh-cCCCeECCeEEEEEECCHHHHHHH
Confidence            3678999999999 999999999999999988876544

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.70  E-value=0.001  Score=39.84  Aligned_cols=36  Identities=11%  Similarity=0.099  Sum_probs=31.9

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHE   38 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~   38 (63)
                      .+.+.++|.+|++ |||..++||.|.+++.....+..
T Consensus        73 ~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~~~  108 (124)
T 1wel_A           73 EFRNEADYKAALC-RHKQYMGNRFIQVHPITKKGMLE  108 (124)
T ss_dssp             EBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHHHHH
T ss_pred             EECCHHHHHHHHH-hCCCeECCcEEEEEECCHHHHHH
Confidence            3678999999999 99999999999999998877654

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=96.68  E-value=0.0013  Score=43.12  Aligned_cols=30  Identities=13%  Similarity=0.051  Sum_probs=28.2

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|..|++.|||..+.||.|.++|..
T Consensus        49 f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~   78 (205)
T 3tyt_A           49 MADGYAVDRAITHLNNNFMFGQKMNVCVSK   78 (205)
T ss_dssp             ESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred             ECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence            578999999999999999999999999975

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=96.65  E-value=0.0016  Score=37.45  Aligned_cols=32  Identities=19%  Similarity=0.181  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCC---ceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNS---KLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~G---R~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||.-+.|   |.|.++|...
T Consensus        62 ~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~   96 (105)
T 2dnh_A           62 KFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADT   96 (105)
T ss_dssp             EESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCS
T ss_pred             EeCCHHHHHHHHHHHcCCccCCCCCccEEEEECcc
Confidence            3578999999999999999888   9999998754

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=96.64  E-value=0.00072  Score=38.81  Aligned_cols=30  Identities=10%  Similarity=-0.040  Sum_probs=27.2

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      .+.+.++|.+|++.|||.-|+||.|.+++-
T Consensus        69 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a   98 (101)
T 2la4_A           69 KYDTHEQAAVCIVALANFPFQGRNLRTGWG   98 (101)
T ss_dssp             ECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred             EECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence            367899999999999999999999998774

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.63  E-value=0.00098  Score=37.99  Aligned_cols=31  Identities=6%  Similarity=0.142  Sum_probs=27.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCce----eEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKL----VTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~----I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..++||.    |.++|..
T Consensus        58 ~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~   92 (99)
T 2div_A           58 EFADLATAEKCLHKINGKPLPGATPAKRFKLNYAT   92 (99)
T ss_dssp             ECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETT
T ss_pred             EeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecC
Confidence            367999999999999999999999    8888753

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=96.63  E-value=0.0011  Score=38.33  Aligned_cols=32  Identities=9%  Similarity=0.078  Sum_probs=28.8

Q ss_pred             CCCCHHHHHHHHHHHh------ccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLH------GAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~Lh------GRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.||      |..++||.|.+++...
T Consensus        63 ~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~  100 (111)
T 1x4h_A           63 QFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVT  100 (111)
T ss_dssp             EESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCC
T ss_pred             EECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCC
Confidence            3578999999999999      9999999999998754

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.59  E-value=0.0018  Score=36.99  Aligned_cols=31  Identities=19%  Similarity=-0.063  Sum_probs=27.6

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++ |||..|+||.|.+++...
T Consensus        58 ~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~   88 (99)
T 2dgs_A           58 TFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEP   88 (99)
T ss_dssp             EESSHHHHHHHHH-HCCCBSSSCBCEEEECCC
T ss_pred             EECCHHHHHHHHH-hCCCEECCeEEEEEECCC
Confidence            3678999999999 999999999999998653

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=96.58  E-value=0.0017  Score=39.86  Aligned_cols=31  Identities=19%  Similarity=0.029  Sum_probs=28.2

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..++||.|.++|..
T Consensus       116 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~  146 (150)
T 2i2y_A          116 EFEDPRDAADAVRELDGRTLCGCRVRVELSN  146 (150)
T ss_dssp             EESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred             EECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence            3578999999999999999999999999864

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.57  E-value=0.00062  Score=39.17  Aligned_cols=30  Identities=23%  Similarity=0.150  Sum_probs=27.6

Q ss_pred             CCCHHHHHHHHHHHhccc-cCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAW-FNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRW-F~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++.|||.. ++||.|.+++..
T Consensus        58 f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~   88 (104)
T 2dhg_A           58 FTDELEQKRALTECQGAVGLGSKPVRLSVAI   88 (104)
T ss_dssp             ESCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred             ECCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence            678999999999999999 999999998864

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=96.57  E-value=0.0016  Score=40.16  Aligned_cols=32  Identities=9%  Similarity=0.197  Sum_probs=29.2

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|+|+.|.+++...
T Consensus        87 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  118 (156)
T 1h2v_Z           87 EYYSRADAENAMRYINGTRLDDRIIRTDWDAG  118 (156)
T ss_dssp             EESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred             EECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            36789999999999999999999999999863

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=96.57  E-value=0.0017  Score=37.34  Aligned_cols=31  Identities=13%  Similarity=0.052  Sum_probs=26.7

Q ss_pred             CCCCHHHHHHHHHHH-hccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTL-HGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~L-hGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.| ||-.++||.|.++|..
T Consensus        50 ~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~   81 (91)
T 2lxi_A           50 EFSHLQDATRWMEANQHSLNILGQKVSMHYSD   81 (91)
T ss_dssp             ECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred             EecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence            368999999999988 5668999999999864

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=96.55  E-value=0.0012  Score=38.68  Aligned_cols=37  Identities=14%  Similarity=0.129  Sum_probs=31.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER   39 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~   39 (63)
                      .+.+.++|.+|++ |||..++||.|.+.+.....+...
T Consensus        61 ~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~~~~~~   97 (107)
T 2lmi_A           61 EMESEQDVQKALE-KHRMYMGQRYVEVYEINNEDVDAL   97 (107)
T ss_dssp             EBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHHHHHHH
T ss_pred             EECCHHHHHHHHH-hCcceeCCeEEEEEECCHHHHHHH
Confidence            3678999999999 999999999999999887665543

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=96.55  E-value=0.00076  Score=39.46  Aligned_cols=30  Identities=10%  Similarity=0.066  Sum_probs=27.3

Q ss_pred             CCCHHHHHHHHHHHhccccCCc-eeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSK-LVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR-~I~Aey~p   32 (63)
                      +.+.++|.+|++.|||.-|+|| .|.+++..
T Consensus        68 f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~   98 (105)
T 2nlw_A           68 YASPAHAVDAVKNADGYKLDKQHTFRVNLFT   98 (105)
T ss_dssp             ECSSSHHHHHHHHCSSEECSTTCEEEEECSC
T ss_pred             ECCHHHHHHHHHHhCCcccCCCceEEEEEcc
Confidence            5688999999999999999999 99998864

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=96.54  E-value=0.00058  Score=40.79  Aligned_cols=36  Identities=25%  Similarity=0.149  Sum_probs=29.8

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechhhHHh
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHE   38 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~   38 (63)
                      +.+.++|.+|++.|||.-|+||.|.+.|+.+..-..
T Consensus        58 f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~   93 (115)
T 3beg_B           58 FVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP   93 (115)
T ss_dssp             ESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred             ECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence            578999999999999999999997777776665443

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=96.52  E-value=0.0021  Score=40.86  Aligned_cols=40  Identities=8%  Similarity=0.111  Sum_probs=34.7

Q ss_pred             CCCHHHHHHHHHHHhccccCC--ceeEEEEechhhHHhhCcC
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNS--KLVTVKYLRYERYHERFPQ   42 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~G--R~I~Aey~p~~~Y~~~FP~   42 (63)
                      +.++++|.+|++.|||+=|.|  +.|.++|......+-++-+
T Consensus        73 f~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~v~~n~  114 (130)
T 3zzy_A           73 YADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNN  114 (130)
T ss_dssp             ESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCCCCCCS
T ss_pred             ECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCceeEEecC
Confidence            478999999999999999988  9999999988876666654

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=96.51  E-value=0.002  Score=39.53  Aligned_cols=32  Identities=19%  Similarity=0.257  Sum_probs=28.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||.-++||.|.+++...
T Consensus       118 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  149 (158)
T 2kn4_A          118 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARY  149 (158)
T ss_dssp             EESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred             EECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            35789999999999999999999999998643

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=96.50  E-value=0.0018  Score=39.08  Aligned_cols=29  Identities=10%  Similarity=-0.005  Sum_probs=26.5

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++ |||..|+||.|.++|..
T Consensus       136 f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~  164 (167)
T 2cjk_A          136 YDSADAVDRVCQ-NKFIDFKDRKIEIKRAE  164 (167)
T ss_dssp             ESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred             ECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence            578999999998 89999999999999864

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=96.48  E-value=0.0028  Score=39.79  Aligned_cols=35  Identities=6%  Similarity=-0.059  Sum_probs=30.9

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHH
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYH   37 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~   37 (63)
                      .+.+.++|.+|++ |||..++||.|.+.+.......
T Consensus        94 ~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~e~~  128 (136)
T 2hgl_A           94 ELGSEDDVKMALK-KDRESMGHRYIEVFKSHRTEMD  128 (136)
T ss_dssp             ECSSHHHHHHHHT-TTEEESSSSEEEEEECCHHHHH
T ss_pred             EECCHHHHHHHHh-cCCCEECCEEEEEEECChHHHH
Confidence            3679999999999 9999999999999998766654

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=96.44  E-value=0.0014  Score=36.49  Aligned_cols=29  Identities=21%  Similarity=0.194  Sum_probs=26.5

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|+ .|||..|+||.|.+++..
T Consensus        55 f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~   83 (89)
T 3ucg_A           55 FSDKESVRTSL-ALDESLFRGRQIKVIPKR   83 (89)
T ss_dssp             ESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred             ECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence            57899999999 999999999999999864

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.42  E-value=0.0024  Score=36.84  Aligned_cols=30  Identities=13%  Similarity=0.043  Sum_probs=27.5

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      +.+.++|.+|+ .|||.-|+||.|.+++...
T Consensus        64 f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~   93 (104)
T 1wi8_A           64 FEDLDSLLSAL-SLNEESLGNKRIRVDVADQ   93 (104)
T ss_dssp             ESSHHHHHHHH-GGGTCEETTEECEEEECCC
T ss_pred             ECCHHHHHHHH-hcCCCEeCCcEEEEEEccC
Confidence            57899999999 9999999999999999754

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=96.41  E-value=0.0015  Score=35.46  Aligned_cols=28  Identities=18%  Similarity=0.072  Sum_probs=25.1

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKY   30 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey   30 (63)
                      .+.+.++|.+|++ |||.-++||.|.+++
T Consensus        47 ~f~~~~~a~~a~~-~~~~~~~g~~l~v~~   74 (75)
T 2mss_A           47 TFESEDIVEKVCE-IHFHEINNKMVECKK   74 (75)
T ss_dssp             ECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred             EECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence            3678999999998 999999999999875

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=96.38  E-value=0.0019  Score=39.70  Aligned_cols=31  Identities=16%  Similarity=0.182  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..++||.|.+++..
T Consensus        95 ~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~  125 (135)
T 2lea_A           95 RFHDKRDAEDAMDAMDGAVLDGRELRVQMAR  125 (135)
T ss_dssp             ECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred             EECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence            3679999999999999999999999999864

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=96.38  E-value=0.0022  Score=40.71  Aligned_cols=33  Identities=15%  Similarity=0.121  Sum_probs=29.8

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechhh
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYER   35 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~   35 (63)
                      +.+.++|.+|++.|||..|+||.|.+++.....
T Consensus       106 f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~~  138 (156)
T 3n9u_C          106 VASENSVHKLLELLPGKVLNGEKVDVRPATRQN  138 (156)
T ss_dssp             ESCHHHHHHHHHHSTTCEETTEECEEEECCHHH
T ss_pred             ECCHHHHHHHHHHcCCCEECCeEeEEEEcCCCc
Confidence            578999999999999999999999999986543

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.37  E-value=0.002  Score=37.11  Aligned_cols=29  Identities=17%  Similarity=0.171  Sum_probs=26.9

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|+ .|||..++||.|.+++..
T Consensus        63 f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~   91 (103)
T 2dng_A           63 FDEVDSLKEAL-TYDGALLGDRSLRVDIAE   91 (103)
T ss_dssp             ESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred             ECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence            57899999999 999999999999999964

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.36  E-value=0.0014  Score=38.59  Aligned_cols=30  Identities=10%  Similarity=0.068  Sum_probs=27.2

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.||| .|+||.|.+++..
T Consensus        65 ~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~   94 (116)
T 2cqd_A           65 TMADRAAAERACKDPNP-IIDGRKANVNLAY   94 (116)
T ss_dssp             EESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred             EECCHHHHHHHHHhCCC-cCCCEEEEEEEcc
Confidence            36789999999999999 8999999999964

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=96.35  E-value=0.002  Score=41.50  Aligned_cols=33  Identities=6%  Similarity=0.105  Sum_probs=29.6

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      .+.+.++|.+|++.|||..|+|+.|.++|....
T Consensus       135 ~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~  167 (177)
T 2f3j_A          135 HFERRADALKAMKQYKGVPLDGRPMDIQLVASQ  167 (177)
T ss_dssp             EESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred             EeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence            357899999999999999999999999997654

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=95.35  E-value=0.00058  Score=40.31  Aligned_cols=33  Identities=12%  Similarity=0.083  Sum_probs=29.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      .+.+.++|.+|++.|||.-|+||.|.+++....
T Consensus        63 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   95 (116)
T 2lcw_A           63 SFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRR   95 (116)
Confidence            467899999999999999999999999987543

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=96.35  E-value=0.0031  Score=37.86  Aligned_cols=31  Identities=26%  Similarity=0.268  Sum_probs=28.5

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      +.+.++|.+|++.|||..++||.|.+++...
T Consensus        52 f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~   82 (168)
T 1b7f_A           52 FTSEMDSQRAIKVLNGITVRNKRLKVSYARP   82 (168)
T ss_dssp             ESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             ECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence            5789999999999999999999999998763

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=96.33  E-value=0.0016  Score=37.70  Aligned_cols=29  Identities=10%  Similarity=0.059  Sum_probs=26.5

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|+ .|||.-|+||.|.+++..
T Consensus        68 f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~   96 (100)
T 2j76_E           68 FEDLDSLLSAL-SLNEESLGNRRIRVDVAD   96 (100)
T ss_dssp             ECCHHHHHHHH-HTTTCCBTTBCCCCEECC
T ss_pred             ECCHHHHHHHH-hcCCCEECCeEEEEEecc
Confidence            57899999999 999999999999998864

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=96.31  E-value=0.0021  Score=35.54  Aligned_cols=26  Identities=12%  Similarity=0.279  Sum_probs=24.4

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEE
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVK   29 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Ae   29 (63)
                      +.+.++|.+|+ .|||.-|+||.|.++
T Consensus        60 f~~~~~a~~A~-~l~g~~~~g~~l~V~   85 (87)
T 2hzc_A           60 FRSVDETTQAM-AFDGIIFQGQSLKIR   85 (87)
T ss_dssp             ESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred             cCCHHHHHHHH-hcCCCEECCeEEEEe
Confidence            57899999999 999999999999986

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.29  E-value=0.0037  Score=36.47  Aligned_cols=30  Identities=13%  Similarity=0.159  Sum_probs=26.5

Q ss_pred             CCCHHHHHHHHHHHhcccc--------CCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWF--------NSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF--------~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++.|||..+        .||.|.++|..
T Consensus        73 f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~  110 (114)
T 1x5o_A           73 MESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG  110 (114)
T ss_dssp             ESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred             ECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence            5789999999999999999        57889988864

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=96.29  E-value=0.0023  Score=46.79  Aligned_cols=32  Identities=19%  Similarity=0.109  Sum_probs=29.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .|.+.++|.+|++.|||.+|+|+.|.|+|...
T Consensus       150 ~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~  181 (437)
T 3pgw_S          150 EYEHERDMHSAYKHADGKKIDGRRVLVDVERG  181 (437)
T ss_pred             eeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence            46789999999999999999999999999864

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.28  E-value=0.0026  Score=39.53  Aligned_cols=31  Identities=23%  Similarity=0.293  Sum_probs=27.6

Q ss_pred             CCCCHHHHHHHHHHHhcccc-----CCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWF-----NSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF-----~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||+-+     .|+.|.+.|..
T Consensus        69 ~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~  104 (114)
T 2cq2_A           69 RYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE  104 (114)
T ss_dssp             EESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEES
T ss_pred             EECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecc
Confidence            36789999999999999988     79999999864

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=96.25  E-value=0.0035  Score=39.26  Aligned_cols=31  Identities=16%  Similarity=0.098  Sum_probs=28.2

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      +.+.++|.+|++.|||..|.|+.|.++|...
T Consensus       121 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  151 (165)
T 1rk8_A          121 YETHKQALAAKEALNGAEIMGQTIQVDWCFV  151 (165)
T ss_dssp             ESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred             ECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence            5789999999999999999999999998643

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=96.24  E-value=0.0038  Score=37.16  Aligned_cols=31  Identities=16%  Similarity=0.177  Sum_probs=28.3

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      +.+.++|.+|++.|||..+.|+.|.+++...
T Consensus        48 f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~   78 (166)
T 3md3_A           48 YHQSHDANIALQTLNGKQIENNIVKINWAFQ   78 (166)
T ss_dssp             ESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             eCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence            5789999999999999999999999998743

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.24  E-value=0.0035  Score=39.13  Aligned_cols=34  Identities=21%  Similarity=0.150  Sum_probs=29.3

Q ss_pred             CCCHHHHHHHHHHHhccccCC--ceeEEEEechhhH
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNS--KLVTVKYLRYERY   36 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~G--R~I~Aey~p~~~Y   36 (63)
                      +.+.++|..|++.|||.-+.|  +.|.++|.....-
T Consensus        69 f~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l  104 (124)
T 2e5i_A           69 FESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL  104 (124)
T ss_dssp             ESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred             ECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence            578999999999999999987  6999999866543

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=96.18  E-value=0.0012  Score=36.96  Aligned_cols=30  Identities=13%  Similarity=-0.022  Sum_probs=26.0

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      +.+.+ |.+|+..|||.-++||.|.+++...
T Consensus        50 f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~   79 (90)
T 2ki2_A           50 MQEES-VSEAIAKLDNTDFMGRTIRVTEANP   79 (90)
T ss_dssp             ECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred             ECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence            56788 9999999999999999999998654

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=96.16  E-value=0.0048  Score=37.52  Aligned_cols=30  Identities=10%  Similarity=-0.063  Sum_probs=27.0

Q ss_pred             CCCHHHHHHHHHHHhcc--ccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGA--WFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGR--WF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++.|||.  .+.||.|.++|..
T Consensus        64 f~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~   95 (100)
T 3r27_A           64 FEDVLGACNAVNYAADNQIYIAGHPAFVNYST   95 (100)
T ss_dssp             ESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred             ECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence            57899999999999998  5899999999975

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=96.13  E-value=0.0033  Score=36.74  Aligned_cols=31  Identities=29%  Similarity=0.143  Sum_probs=28.1

Q ss_pred             CCCHHHHHHHHHHHhccccCC-----ceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNS-----KLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~G-----R~I~Aey~p~   33 (63)
                      +.+.++|.+|++.|||.-|+|     |.|.+++-..
T Consensus        57 f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~   92 (108)
T 1x4c_A           57 FVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP   92 (108)
T ss_dssp             ESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred             ECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence            578999999999999999999     9999998654

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.09  E-value=0.00088  Score=37.22  Aligned_cols=27  Identities=7%  Similarity=0.016  Sum_probs=24.5

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEE
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVK   29 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Ae   29 (63)
                      +.+.++|.+|++.|||.-++||.|.+.
T Consensus        54 f~~~~~a~~A~~~l~g~~~~g~~~~~~   80 (85)
T 1x4e_A           54 FDSPSAAQKAVTALKASGVQAQMAKQS   80 (85)
T ss_dssp             ESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred             ECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence            578999999999999999999998654

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=96.06  E-value=0.0055  Score=36.52  Aligned_cols=31  Identities=26%  Similarity=0.371  Sum_probs=28.5

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      +.+.++|.+|++.|||.-+.|+.|.+++...
T Consensus        51 f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~   81 (167)
T 1fxl_A           51 YIDPKDAEKAINTLNGLRLQTKTIKVSYARP   81 (167)
T ss_dssp             ESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             ECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence            5789999999999999999999999998763

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=96.06  E-value=0.0037  Score=36.93  Aligned_cols=30  Identities=13%  Similarity=0.078  Sum_probs=27.1

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|+ .|||..|+||.|.+++..
T Consensus        84 ~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~  113 (124)
T 2jwn_A           84 EFAERNSVDAAV-AMDETVFRGRTIKVLPKR  113 (124)
T ss_dssp             EESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred             EECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence            367899999999 899999999999999864

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.03  E-value=0.0031  Score=36.92  Aligned_cols=32  Identities=16%  Similarity=0.041  Sum_probs=28.4

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechhh
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYER   35 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~   35 (63)
                      +.+.++|.+|+ .|||.-|+||.|.+++.....
T Consensus        74 f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~  105 (114)
T 2cq4_A           74 FCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEK  105 (114)
T ss_dssp             ESCGGGHHHHH-HHTTEEETTEEEEEEEHHHHH
T ss_pred             eCcHHHHHHHH-HcCCCEeCCeEEEEEecCCCc
Confidence            56889999999 999999999999999976544

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.96  E-value=0.007  Score=35.72  Aligned_cols=38  Identities=18%  Similarity=0.108  Sum_probs=32.9

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhhC
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERF   40 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~F   40 (63)
                      .+.+.++|.+|++. ||..|+||.|.+++......+...
T Consensus        63 ~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~~~~~~  100 (114)
T 2cpy_A           63 QFKNEDDARKSERL-HRKKLNGREAFVHVVTLEDMREIE  100 (114)
T ss_dssp             ECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHHHHHHH
T ss_pred             EECCHHHHHHHHHh-CCCccCCeEEEEEECCHHHHHHHH
Confidence            36799999999998 999999999999999887766543

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.94  E-value=0.0062  Score=36.63  Aligned_cols=30  Identities=17%  Similarity=0.009  Sum_probs=26.8

Q ss_pred             CCCHHHHHHHHHHHhcc--ccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGA--WFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGR--WF~GR~I~Aey~p   32 (63)
                      +.+.++|..|++.|||.  -+.||.|.++|..
T Consensus        59 f~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~   90 (102)
T 1x4d_A           59 MATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ   90 (102)
T ss_dssp             ESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred             ECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence            57899999999999985  4999999999975

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.94  E-value=0.0042  Score=35.86  Aligned_cols=31  Identities=13%  Similarity=0.019  Sum_probs=27.4

Q ss_pred             CCCHHHHHHHHHHHh--ccccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLH--GAWFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~Lh--GRWF~GR~I~Aey~p~   33 (63)
                      +.+.++|.+|++.||  |.-++||.|.++|...
T Consensus        59 f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~   91 (109)
T 2dis_A           59 YESHRAAAMARRKLMPGRIQLWGHQIAVDWAEP   91 (109)
T ss_dssp             ESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCS
T ss_pred             ecCHHHHHHHHHHhhCCCceecCCeEEEEEcCC
Confidence            578999999999996  5899999999999753

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.91  E-value=0.0067  Score=36.21  Aligned_cols=31  Identities=3%  Similarity=0.013  Sum_probs=27.3

Q ss_pred             CCCHHHHHHHHHHHhcc--ccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGA--WFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGR--WF~GR~I~Aey~p~   33 (63)
                      +.+.++|.+|++.|||.  .++||.|.++|...
T Consensus        58 f~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~   90 (104)
T 1wex_A           58 FENIDSAKECVTFAADVPVYIAGQQAFFNYSTS   90 (104)
T ss_dssp             ESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred             ECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence            57899999999999875  59999999999753

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.91  E-value=0.011  Score=35.66  Aligned_cols=36  Identities=8%  Similarity=-0.033  Sum_probs=31.1

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHE   38 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~   38 (63)
                      .+.+.++|.+|+ .|||..++||.|.+.......|..
T Consensus        62 ~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~~~~~   97 (109)
T 2dnn_A           62 KFLSPQDTFEAL-KRNRMLMIQRYVEVSPATERQWVA   97 (109)
T ss_dssp             ECSSHHHHHHHH-HTTTEEETTEEEEEEECCHHHHHH
T ss_pred             EECCHHHHHHHH-hcCCCeECCeEEEEEECCccchhh
Confidence            467899999999 799999999999998887776643

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=95.90  E-value=0.006  Score=38.09  Aligned_cols=33  Identities=12%  Similarity=0.148  Sum_probs=29.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      .+.+.++|.+|++.|||..|.||.|.+++....
T Consensus        47 ~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~   79 (198)
T 1qm9_A           47 QMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ   79 (198)
T ss_dssp             ECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred             EECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence            367899999999999999999999999997643

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.90  E-value=0.0069  Score=36.06  Aligned_cols=30  Identities=7%  Similarity=0.015  Sum_probs=26.6

Q ss_pred             CCCHHHHHHHHHHHh--ccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLH--GAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~Lh--GRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++.||  |..+.||.|.++|..
T Consensus        58 f~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~   89 (101)
T 2cq1_A           58 LATEEAAITMVNYYSAVTPHLRNQPIYIQYSN   89 (101)
T ss_dssp             ESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred             ECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence            578999999999886  678999999999975

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=95.90  E-value=0.005  Score=37.09  Aligned_cols=30  Identities=20%  Similarity=0.135  Sum_probs=25.2

Q ss_pred             CCCCHHHHHHHHHHHhccccC---CceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFN---SKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~---GR~I~Aey~   31 (63)
                      .+.+.++|.+|++.|||+-+.   ||.|.++|-
T Consensus       142 ~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a  174 (175)
T 3nmr_A          142 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA  174 (175)
T ss_dssp             EESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred             EECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence            467899999999999997554   499999874

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=95.89  E-value=0.0053  Score=40.40  Aligned_cols=33  Identities=18%  Similarity=0.219  Sum_probs=29.6

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      .+.+.++|.+|++.|||..+.||.|.++|....
T Consensus        58 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   90 (282)
T 3pgw_A           58 IFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD   90 (282)
T ss_pred             EECCHHHHHHHHHHhcCCeeCCcEEEEEEeccC
Confidence            467899999999999999999999999998543

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.84  E-value=0.0037  Score=38.65  Aligned_cols=42  Identities=10%  Similarity=0.007  Sum_probs=35.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhhCcCcc
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAK   44 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~FP~a~   44 (63)
                      .+.+.++|.+|++. ||..++||.|.+..............+.
T Consensus        74 ~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~e~~~~~~~~~  115 (123)
T 2dha_A           74 LFACEEYAQNALRK-HKDLLGKRYIELFRSTAAEVQQVLNRFS  115 (123)
T ss_dssp             CCSSHHHHHHHHTT-TTEESSSCEECCEEECHHHHHHHHHHHT
T ss_pred             EECCHHHHHHHHHh-CCCeeCCeEEEEEECCHHHHHHHHHhcc
Confidence            47899999999997 9999999999999988887777654433

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.73  E-value=0.011  Score=36.71  Aligned_cols=30  Identities=3%  Similarity=-0.012  Sum_probs=27.0

Q ss_pred             CCCHHHHHHHHHHHhc--cccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHG--AWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhG--RWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++.|+|  ..++||.|.++|..
T Consensus        74 F~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~  105 (119)
T 2ad9_A           74 MNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN  105 (119)
T ss_dssp             CSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred             ECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence            6789999999999985  69999999999964

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=95.62  E-value=0.0083  Score=38.93  Aligned_cols=32  Identities=13%  Similarity=0.134  Sum_probs=29.0

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||..|.||.|.+++...
T Consensus        78 ~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~  109 (229)
T 2adc_A           78 QMADGNQAQLAMSHLNGHKLHGKPIRITLSKH  109 (229)
T ss_dssp             EESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred             EECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence            35789999999999999999999999998754

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=95.57  E-value=0.011  Score=38.83  Aligned_cols=33  Identities=15%  Similarity=0.113  Sum_probs=29.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      .+.+.++|.+|++.|||..++||.|.+++....
T Consensus       143 ~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~  175 (284)
T 3smz_A          143 EYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG  175 (284)
T ss_dssp             EESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred             EECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence            357899999999999999999999999998654

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.56  E-value=0.007  Score=35.19  Aligned_cols=33  Identities=9%  Similarity=0.067  Sum_probs=28.9

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechhhH
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERY   36 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y   36 (63)
                      +.+.++|.+|++. ||..++||.|.+.+.....+
T Consensus        64 F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~   96 (104)
T 1wg5_A           64 FASQEIAEKALKK-HKERIGHRYIEIFKSSRAEV   96 (104)
T ss_dssp             ESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTTS
T ss_pred             ECCHHHHHHHHHh-CcchhCCcEEEEEECCHHHH
Confidence            5789999999998 99999999999988765544

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.48  E-value=0.014  Score=35.87  Aligned_cols=30  Identities=17%  Similarity=0.179  Sum_probs=26.5

Q ss_pred             CCCHHHHHHHHHHHhc--cccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHG--AWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhG--RWF~GR~I~Aey~p   32 (63)
                      +.+.++|..|++.|||  ..|+||.|.++|..
T Consensus        69 f~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~  100 (112)
T 1x4f_A           69 METREDAMAMVDHCLKKALWFQGRCVKVDLSE  100 (112)
T ss_dssp             CSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred             ECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence            6789999999999975  57999999999964

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.40  E-value=0.007  Score=32.66  Aligned_cols=28  Identities=11%  Similarity=-0.019  Sum_probs=25.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKY   30 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey   30 (63)
                      .+.+.++|.+|++.|| ..++||.|.+++
T Consensus        48 ~f~~~~~a~~a~~~~~-~~~~g~~l~v~~   75 (77)
T 1uaw_A           48 TFMDQAGVDKVLAQSR-HELDSKTIDPKV   75 (77)
T ss_dssp             CCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred             EEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence            4678999999999999 999999999886

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=95.35  E-value=0.015  Score=38.36  Aligned_cols=33  Identities=15%  Similarity=0.041  Sum_probs=29.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      .+.+.++|.+|++.|||..++|+.|.+++....
T Consensus       165 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~  197 (292)
T 2ghp_A          165 DVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL  197 (292)
T ss_dssp             ECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             EECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence            367899999999999999999999999987543

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=95.33  E-value=0.013  Score=35.57  Aligned_cols=31  Identities=13%  Similarity=0.003  Sum_probs=27.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|+ .|||..+.||.|.+++...
T Consensus        60 ~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~   90 (175)
T 1fje_B           60 DFESAEDLEKAL-ELTGLKVFGNEIKLEKPKG   90 (175)
T ss_dssp             EESSHHHHHHHH-HGGGEEETTEEEEEECCCC
T ss_pred             EECCHHHHHHHH-hcCCCEeCCeEEEEecCCC
Confidence            367899999999 5999999999999998753

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=95.28  E-value=0.0052  Score=37.10  Aligned_cols=30  Identities=10%  Similarity=0.135  Sum_probs=27.0

Q ss_pred             CCCHHHHHHHHHHHhcc----ccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGA----WFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGR----WF~GR~I~Aey~p~   33 (63)
                      +.+. +|.+|++.|||.    .++||.|.++|...
T Consensus        74 f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~  107 (131)
T 2m2b_A           74 LSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKG  107 (131)
T ss_dssp             CCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred             ECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCC
Confidence            5678 999999999999    99999999998754

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.23  E-value=0.0023  Score=36.36  Aligned_cols=28  Identities=4%  Similarity=-0.115  Sum_probs=25.4

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      +.+.++|.+|+. |||.-|+||.|.+++-
T Consensus        52 f~~~~~a~~ai~-l~g~~~~g~~l~V~~a   79 (94)
T 2e5g_A           52 MGDVGAREAVLS-QSQHSLGGHRLRVRPR   79 (94)
T ss_dssp             ESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred             ECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence            578999999999 9999999999999744

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=95.22  E-value=0.013  Score=36.60  Aligned_cols=30  Identities=10%  Similarity=-0.006  Sum_probs=26.2

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++.|||..++||.|.+++..
T Consensus        77 f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~  106 (216)
T 2qfj_A           77 YEVPEAAQLALEQMNSVMLGGRNIKVGRPS  106 (216)
T ss_dssp             ESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred             eCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence            578999999999999999999999997643

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=94.91  E-value=0.0099  Score=36.62  Aligned_cols=30  Identities=10%  Similarity=0.194  Sum_probs=26.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|+ .|||..|.||.|.+++..
T Consensus        57 ~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~   86 (198)
T 2yh0_A           57 EFRSVDETTQAM-AFDGIIFQGQSLKIRRPH   86 (198)
T ss_dssp             EESCSHHHHHHG-GGTTEEETTEEEEEECCC
T ss_pred             EeCCHHHHHHHH-HhcCCEEcCceEEEeCCC
Confidence            367899999999 899999999999998754

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=94.91  E-value=0.0076  Score=40.23  Aligned_cols=33  Identities=6%  Similarity=-0.102  Sum_probs=29.8

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechhh
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYER   35 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~   35 (63)
                      +.+.++|.+|++.|||.-|+||.|.+++.....
T Consensus       119 f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~~  151 (229)
T 3q2s_C          119 VGSEASSKKLMDLLPKRELHGQNPVVTPVNKQF  151 (229)
T ss_dssp             ESCTTHHHHHHTTSTTSCBTTBCCEEEECCHHH
T ss_pred             ECCHHHHHHHHHHcCCCeECCEEeEEEECCCCc
Confidence            578899999999999999999999999976554

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.87  E-value=0.015  Score=33.99  Aligned_cols=30  Identities=10%  Similarity=-0.032  Sum_probs=27.0

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++. ||..|+||.|.+++..
T Consensus        75 ~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~  104 (116)
T 1x4b_A           75 TFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV  104 (116)
T ss_dssp             ECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred             EeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence            36789999999999 9999999999999864

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.80  E-value=0.0093  Score=36.43  Aligned_cols=30  Identities=3%  Similarity=-0.028  Sum_probs=26.3

Q ss_pred             CCCHHHHHHHHHHHh--ccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLH--GAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~Lh--GRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++.|+  |..++||.|.++|..
T Consensus        59 F~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~   90 (105)
T 1sjq_A           59 MNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN   90 (105)
T ss_dssp             ESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred             ECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence            578999999999997  489999999998864

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.78  E-value=0.014  Score=34.51  Aligned_cols=29  Identities=7%  Similarity=0.053  Sum_probs=25.9

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|+. +||.-|+||.|.+++-.
T Consensus        59 F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~   87 (103)
T 1s79_A           59 FDSIESAKKFVE-TPGQKYKETDLLILFKD   87 (103)
T ss_dssp             ESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred             ECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence            578999999999 99999999999998543

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=94.68  E-value=0.019  Score=35.26  Aligned_cols=32  Identities=6%  Similarity=-0.157  Sum_probs=26.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      .+.+.++|.+|+.. ||..|+||.|.+.+....
T Consensus       152 ~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k  183 (196)
T 1l3k_A          152 TFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSK  183 (196)
T ss_dssp             EESSHHHHHHHHHC-SCCEETTEECEEEECC--
T ss_pred             EECCHHHHHHHHHh-CCcEECCEEEEEEecCCh
Confidence            36789999999987 899999999999986543

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=94.66  E-value=0.027  Score=36.10  Aligned_cols=33  Identities=15%  Similarity=0.061  Sum_probs=29.1

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechhh
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYER   35 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~   35 (63)
                      +.+.++|.+|++.|||..+.||.|.+.+.....
T Consensus        64 F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~   96 (213)
T 4f02_A           64 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDP   96 (213)
T ss_dssp             ESSHHHHHHHHHHHTTCEETTEECEEEECCCCT
T ss_pred             eCCHHHHHHHHHHhhhhhcCCcccccccccccc
Confidence            578999999999999999999999998875443

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=94.58  E-value=0.017  Score=39.84  Aligned_cols=32  Identities=9%  Similarity=-0.087  Sum_probs=28.2

Q ss_pred             CCCCHHHHHHHHHHHhcccc------------CCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWF------------NSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF------------~GR~I~Aey~p~   33 (63)
                      .+.+.++|..|+++|||..+            +||.|.+++-..
T Consensus       185 ~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~  228 (240)
T 3u1l_A          185 KFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANE  228 (240)
T ss_dssp             EESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred             EeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccC
Confidence            35789999999999999999            999999999753

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.54  E-value=0.018  Score=33.66  Aligned_cols=30  Identities=13%  Similarity=-0.033  Sum_probs=25.9

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|+ .+||..++||.|.+....
T Consensus        61 ~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~   90 (102)
T 1wez_A           61 EFATHEDAVAAM-AKDKANMQHRYVELFLNS   90 (102)
T ss_dssp             ECSSSHHHHHHH-TTSSCCSSSSCCEEEEEC
T ss_pred             EECCHHHHHHHH-HhCCCeECCcEEEEEECC
Confidence            367899999999 479999999999997654

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=94.51  E-value=0.019  Score=34.61  Aligned_cols=29  Identities=10%  Similarity=0.194  Sum_probs=26.1

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      .+.+.++|.+|+ .|||..++||.|.+++.
T Consensus        57 ~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~   85 (172)
T 2g4b_A           57 EFRSVDETTQAM-AFDGIIFQGQSLKIRRP   85 (172)
T ss_dssp             EESSHHHHHHHG-GGTTCEETTEECEEECC
T ss_pred             EeCCHHHHHHHH-HhCCcEecCceeeecCC
Confidence            367899999999 99999999999999864

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=94.34  E-value=0.04  Score=36.39  Aligned_cols=31  Identities=13%  Similarity=0.157  Sum_probs=28.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|+..|||.-+.||.|.+.+..
T Consensus        64 ~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~   94 (261)
T 3sde_A           64 RLESRTLAEIAKAELDGTILKSRPLRIRFAT   94 (261)
T ss_dssp             ECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence            4689999999999999999999999999864

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.23  E-value=0.0088  Score=34.34  Aligned_cols=29  Identities=3%  Similarity=-0.176  Sum_probs=26.2

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++. ||..|+||.|.+++..
T Consensus        65 f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~   93 (105)
T 2dh8_A           65 FKDPNCVGTVLAS-RPHTLDGRNIDPKPCT   93 (105)
T ss_dssp             ESSTTHHHHHHHH-CSEEETTEEEBCCCSC
T ss_pred             ECCHHHHHHHHHh-CCCeECCEEEEEEEcc
Confidence            5788999999999 9999999999998754

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=93.96  E-value=0.033  Score=30.71  Aligned_cols=27  Identities=4%  Similarity=0.016  Sum_probs=23.3

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKY   30 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey   30 (63)
                      +.+.++|.+|++. +|.-++||.|.+++
T Consensus        60 f~~~~~a~~A~~~-~~~~~~g~~i~v~~   86 (87)
T 3s7r_A           60 FKDAASVEKVLDQ-KEHRLDGRVIDPKK   86 (87)
T ss_dssp             ESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred             ECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence            5789999999965 77789999999875

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=93.10  E-value=0.036  Score=29.65  Aligned_cols=27  Identities=7%  Similarity=-0.130  Sum_probs=24.1

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKY   30 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey   30 (63)
                      +.+.++|.+|++. ||.-++||.|.+++
T Consensus        48 f~~~~~a~~Ai~~-~~~~~~g~~l~v~~   74 (75)
T 1iqt_A           48 FKEEEPVKKIMEK-KYHNVGLSKCEIKV   74 (75)
T ss_dssp             CSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred             ECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence            5789999999995 99999999998875

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.05  E-value=0.07  Score=32.84  Aligned_cols=28  Identities=7%  Similarity=-0.018  Sum_probs=25.3

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      +.+.++|.+|++ |||-=++||.|++++-
T Consensus        65 F~d~~sAl~AI~-ldG~~v~Gr~L~V~~k   92 (95)
T 1ufw_A           65 FADSHSALSVLD-VDGMKVKGRAVKISGP   92 (95)
T ss_dssp             CSCSHHHHHHHH-GGGSEETTEEEEEECC
T ss_pred             EcChHHHHHHHh-cCCeeeCCeEEEEecc
Confidence            568899999999 9999999999999863

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=92.71  E-value=0.074  Score=31.10  Aligned_cols=29  Identities=10%  Similarity=-0.056  Sum_probs=25.6

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++.++ .-|+||.|.+++..
T Consensus        74 f~~~~~A~~Ai~~~~-~~l~g~~l~V~~a~  102 (109)
T 2rs2_A           74 FMDQAGVDKVLAQSR-HELDSKTIDPKVAF  102 (109)
T ss_dssp             ESSHHHHHHHHHSSC-EEETTEEEEEEECC
T ss_pred             ECCHHHHHHHHHHCC-CcCCCEEEEEEEcc
Confidence            578999999999974 99999999999864

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=92.52  E-value=0.024  Score=35.59  Aligned_cols=31  Identities=10%  Similarity=-0.037  Sum_probs=26.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|+ .|||..++||.|.+.....
T Consensus        92 ~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~  122 (139)
T 2hgn_A           92 EFATHEEAVAAM-SKDRANMQHRYIELFLNST  122 (139)
T ss_dssp             ECSHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred             EeCCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence            367899999999 8999999999999877654

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=92.34  E-value=0.11  Score=34.32  Aligned_cols=34  Identities=18%  Similarity=0.137  Sum_probs=27.8

Q ss_pred             CCCCHHHHHHHHHHH-hccccC---CceeEEEEechhh
Q psy2111           2 GEVGWEKKRRAYRTL-HGAWFN---SKLVTVKYLRYER   35 (63)
Q Consensus         2 kc~s~e~A~~A~~~L-hGRWF~---GR~I~Aey~p~~~   35 (63)
                      .+.+.++|.+|++.| +|.++.   ||.|.+++.....
T Consensus       143 ~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~  180 (261)
T 3sde_A          143 EFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD  180 (261)
T ss_dssp             EESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred             EeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence            367899999999999 556665   9999999987543

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.18  E-value=0.11  Score=30.44  Aligned_cols=28  Identities=7%  Similarity=-0.275  Sum_probs=22.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      .+.+.++|.+|++.||+  ++|+.|.+...
T Consensus        58 ~f~~~~~a~~Ai~~~~~--~~G~~~~~~~~   85 (114)
T 2dnl_A           58 LFQEESSVQALIDACLE--EDGKLYLCVSS   85 (114)
T ss_dssp             CCSSHHHHHHHHHHSEE--ETTEEEEEECC
T ss_pred             EECCHHHHHHHHHhhhh--cCCcEEEeccC
Confidence            46799999999999976  77877776543

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.94  E-value=0.12  Score=29.25  Aligned_cols=30  Identities=7%  Similarity=0.083  Sum_probs=25.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++  +|..++||.|.+++...
T Consensus        63 ~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~   92 (103)
T 2cqg_A           63 RFTEYETQVKVMS--QRHMIDGRWCDCKLPNS   92 (103)
T ss_dssp             EESSHHHHHHHHH--SCEEETTEEEEEECCCT
T ss_pred             EECCHHHHHHHHH--cCCeeCCeEEEEEecCC
Confidence            3578999999999  46799999999998654

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.93  E-value=0.083  Score=32.17  Aligned_cols=29  Identities=10%  Similarity=0.064  Sum_probs=25.9

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++ |||-=++||.|++++-.
T Consensus        56 F~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt   84 (91)
T 2dnr_A           56 FLEGSSALNVLS-LNGKELLNRTITIALKS   84 (91)
T ss_dssp             ESSHHHHHHGGG-GTTCEETTEEEEEEECC
T ss_pred             ECChHHHHHHHh-cCCeEeCCeEEEEEeCC
Confidence            468899999999 99999999999998754

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=91.91  E-value=0.036  Score=34.44  Aligned_cols=34  Identities=15%  Similarity=0.058  Sum_probs=28.1

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhH
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERY   36 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y   36 (63)
                      .+.+.++|.+|++. ||..++||.|.+........
T Consensus        90 ~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~~~e~  123 (126)
T 2hgm_A           90 QFASQELAEKALGK-HKERIGHRYIEVFKSSQEEV  123 (126)
T ss_dssp             EESSTTHHHHHHTT-TTCCBTTBCCCCEEECHHHH
T ss_pred             EECCHHHHHHHHHH-CCCEECCEEEEEEECCHHHh
Confidence            35789999999985 88999999999988765543

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=91.59  E-value=0.15  Score=33.03  Aligned_cols=28  Identities=11%  Similarity=-0.101  Sum_probs=23.9

Q ss_pred             CCCHHHHHHHHHHHhccccCCc----eeEEEE
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSK----LVTVKY   30 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR----~I~Aey   30 (63)
                      +.+.++|.+|+..|||.-++|+    ++++++
T Consensus       172 f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~  203 (205)
T 3tyt_A          172 WDSKSDALETLGFLNHYQMKNPNGPYPYTLKL  203 (205)
T ss_dssp             CSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred             eCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence            6789999999999999999998    455544

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.07  E-value=0.12  Score=30.79  Aligned_cols=29  Identities=10%  Similarity=0.055  Sum_probs=24.8

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      +.+.++|..|++.++|  +.||.|.++|...
T Consensus        61 F~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~   89 (100)
T 2d9o_A           61 FATVKAAELAVQNEVG--LVDNPLKISWLEG   89 (100)
T ss_dssp             ESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred             ECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence            5689999999999888  7899999998643

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=90.74  E-value=0.17  Score=30.89  Aligned_cols=31  Identities=13%  Similarity=-0.007  Sum_probs=26.8

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      +.+.++|.+|++. +|..++||.|.+++....
T Consensus        62 f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~   92 (196)
T 1l3k_A           62 YATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR   92 (196)
T ss_dssp             ESSHHHHHHHHHT-CSCEETTEECEEEECCC-
T ss_pred             eCCHHHHHHHHhc-CCCEECCEEeeeecccCc
Confidence            5789999999987 999999999999987543

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=90.58  E-value=0.11  Score=31.53  Aligned_cols=30  Identities=7%  Similarity=0.008  Sum_probs=26.4

Q ss_pred             CCCHHHHHHHHHHH-hccccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTL-HGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~L-hGRWF~GR~I~Aey~p~   33 (63)
                      +.+.++|.+|++.| ||..++| .|.+.+...
T Consensus        20 ~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~   50 (150)
T 2i2y_A           20 AVDAATAEKVFKQYANDNGVDG-EWTYDDATK   50 (150)
T ss_dssp             CSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred             ecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence            67899999999999 9999999 998886543

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=88.36  E-value=0.58  Score=27.76  Aligned_cols=31  Identities=13%  Similarity=-0.039  Sum_probs=23.8

Q ss_pred             CCCCHHHHHHHHHHHhccccC---CceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFN---SKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~---GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||.-+.   ++.|.+.+..
T Consensus        53 ~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~   86 (175)
T 3nmr_A           53 TFYTRKAALEAQNALHNMKVLPGMHHPIQMKPAD   86 (175)
T ss_dssp             EESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECG
T ss_pred             EECCHHHHHHHHHHhcCcEEccCCccceEEcccc
Confidence            367899999999999997654   5666666544

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=86.15  E-value=0.45  Score=30.64  Aligned_cols=27  Identities=7%  Similarity=0.010  Sum_probs=23.5

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKY   30 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey   30 (63)
                      +.+.++|.+|+..+++ -|+||.|.+..
T Consensus       157 F~~~e~A~~A~~~~~~-~~~Gr~l~V~~  183 (193)
T 2voo_A          157 FDSIESAKKFVETPGQ-KYKETDLLILF  183 (193)
T ss_dssp             ESSHHHHHHHHHCTTC-EETTEECEEEE
T ss_pred             ECCHHHHHHHHHhCCC-eECCEEEEEEE
Confidence            5789999999988876 89999999874

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=85.36  E-value=0.62  Score=33.51  Aligned_cols=30  Identities=23%  Similarity=0.301  Sum_probs=24.7

Q ss_pred             CCCCHHHHHHHHHHHhcccc---CCc--eeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWF---NSK--LVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF---~GR--~I~Aey~   31 (63)
                      .|.+.|+|.+|++.|||.-+   .|+  .|...|+
T Consensus        62 ~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~   96 (345)
T 3tht_A           62 RYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV   96 (345)
T ss_dssp             EESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEC
T ss_pred             EECCHHHHHHHHHHhCCCccccccCCceEEEEEEe
Confidence            36899999999999999987   355  5777777

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=82.24  E-value=0.2  Score=28.32  Aligned_cols=28  Identities=7%  Similarity=-0.118  Sum_probs=23.6

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++  ||.-++|+.|.+.+.-
T Consensus        57 f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~   84 (102)
T 2xs2_A           57 FYNDVDVQKIVE--SQINFHGKKLKLGPAI   84 (102)
T ss_dssp             ESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred             ECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence            467889999999  9999999999976654

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=80.61  E-value=1.2  Score=28.90  Aligned_cols=26  Identities=15%  Similarity=0.045  Sum_probs=22.9

Q ss_pred             HHHHHH--HHhccccCCceeEEEEechh
Q psy2111           9 KRRAYR--TLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         9 A~~A~~--~LhGRWF~GR~I~Aey~p~~   34 (63)
                      |.+|+.  .|+|.-++||.|.+++=+..
T Consensus        69 A~kAi~~~~lng~~I~Gr~irV~ln~~g   96 (136)
T 2j8a_A           69 AFSAVRKHESSGCFIMGFKFEVILNKHS   96 (136)
T ss_dssp             HHHHHHHTTTTCEEETTEEEEEEECCTT
T ss_pred             HHHHHHHhhhcCCeecCcEEEEEECccc
Confidence            889999  89999999999999976543

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=80.55  E-value=1.6  Score=27.86  Aligned_cols=30  Identities=13%  Similarity=0.144  Sum_probs=27.0

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.|..+|++|.=+|||-=|+||.|.+--+.
T Consensus        69 f~d~~~AgKasLaL~G~ef~gr~Lr~gTv~   98 (117)
T 2l9w_A           69 FRDSKFAAKMLMILNGSQFQGKVIRSGTIN   98 (117)
T ss_dssp             CSCHHHHHHHHHHHSSEEETTEEEEEECHH
T ss_pred             EccchhhHHHHhhcCCeeecCeEEEecCHH
Confidence            678999999999999999999999987554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	63
d1o0pa_	104	d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit	1e-04

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 1e-04
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 10  RRAYRTLHGAWFNSKLVTVKYLRYERYHER 39
           ++A + L G  F +++V  KY   + YH R
Sbjct: 72  QKAMQGLTGRKFANRVVVTKYCDPDSYHRR 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	63
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.33
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	98.93
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	98.87
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	97.85
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	97.68
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	97.65
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	97.65
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	97.64
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	97.58
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	97.56
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	97.54
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	97.47
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	97.46
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	97.45
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	97.43
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	97.43
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	97.41
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	97.38
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	97.38
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	97.35
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	97.34
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	97.33
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	97.32
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	97.29
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	97.29
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	97.28
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	97.28
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	97.28
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	97.26
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	97.26
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	97.25
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	97.2
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	97.18
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	97.17
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	97.15
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	97.12
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	97.0
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	96.99
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	96.97
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	96.95
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	96.95
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	96.94
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	96.94
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	96.89
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	96.88
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	96.87
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	96.87
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	96.86
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	96.76
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	96.74
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	96.74
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	96.66
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	96.61
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	96.59
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	96.42
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	96.3
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	96.26
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	96.25
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	96.23
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	95.99
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	95.88
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	95.8
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	95.7
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	95.56
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	95.55
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	95.55
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	95.53
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	95.22
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	95.17
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	95.05
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	94.67
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	94.4
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	94.23
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	94.07
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	93.51
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	93.48
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	93.12
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	92.05
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	91.24
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	91.21
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	90.81
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	90.57
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	89.84
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	87.11
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	84.69
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	82.91

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.7e-13  Score=81.13  Aligned_cols=38  Identities=26%  Similarity=0.378  Sum_probs=36.2

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER   39 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~   39 (63)
                      +|.++++|.+|++.||||||+||.|.|+|++.+.|+++
T Consensus        64 ~f~~~e~A~~A~~~l~Gr~f~gR~v~v~f~~~~~y~~~  101 (104)
T d1o0pa_          64 EFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR  101 (104)
T ss_dssp             EESCHHHHHHHHHHHSSCCSSSSCCEEEEECHHHHHHT
T ss_pred             EECCHHHHHHHHHHHCCCEECCeEEEEEEcCHHHhhhc
Confidence            58899999999999999999999999999999999875

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.1e-10  Score=69.17  Aligned_cols=35  Identities=23%  Similarity=0.363  Sum_probs=31.6

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEe-chhhH
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL-RYERY   36 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~-p~~~Y   36 (63)
                      +|.++++|.+|++.||||||+||.|.|+|. +.+.|
T Consensus        63 ~f~~~e~A~~A~~~lng~~~~gr~i~v~~~~g~~~~   98 (99)
T d2dita1          63 SFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDY   98 (99)
T ss_dssp             ECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCS
T ss_pred             EECCHHHHHHHHHHhCCcEECCEEEEEEEeCCcCCC
Confidence            588999999999999999999999999985 66655

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.9e-10  Score=68.07  Aligned_cols=31  Identities=19%  Similarity=0.261  Sum_probs=29.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.||||||+||.|.++|.|
T Consensus        74 ~f~~~~~A~~Ai~~lng~~~~gr~i~v~~sP  104 (104)
T d1jmta_          74 KFRREEDAEKAVIDLNNRWFNGQPIHAELSP  104 (104)
T ss_dssp             EESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred             EEechhHHHHHHHHHCCCEECCEEEEEEECC
Confidence            4789999999999999999999999999987

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=7e-06  Score=45.37  Aligned_cols=31  Identities=16%  Similarity=0.107  Sum_probs=28.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.|+|.+|++.|||.+|+||.|.++|..
T Consensus        49 ~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a~   79 (81)
T d2ghpa1          49 DVTSKEDARYCVEKLNGLKIEGYTLVTKVSN   79 (81)
T ss_dssp             ECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence            4679999999999999999999999999864

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=1.6e-05  Score=43.92  Aligned_cols=30  Identities=7%  Similarity=0.129  Sum_probs=27.8

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|..|++.|||..++||.|.+++..
T Consensus        48 f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a~   77 (78)
T d1no8a_          48 FERKADALKAMKQYNGVPLDGRPMNIQLVT   77 (78)
T ss_dssp             ESCHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             ECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            578999999999999999999999999864

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=8.5e-06  Score=47.27  Aligned_cols=31  Identities=13%  Similarity=0.104  Sum_probs=28.5

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      +.+.++|.+|++.|||.+|.||.|.+++...
T Consensus        57 f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~   87 (98)
T d1wf2a_          57 YVNERNARAAVAGEDGRMIAGQVLDINLAAE   87 (98)
T ss_dssp             ESSHHHHHHHHHTTTTCEETTEECEEEETTS
T ss_pred             ECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            6789999999999999999999999999643

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.65  E-value=1.8e-05  Score=43.61  Aligned_cols=31  Identities=26%  Similarity=0.303  Sum_probs=28.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..++||.|.++|..
T Consensus        50 ~f~~~~~A~~ai~~lng~~~~g~~l~v~~a~   80 (82)
T d1b7fa1          50 DFTSEMDSQRAIKVLNGITVRNKRLKVSYAR   80 (82)
T ss_dssp             EESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            3679999999999999999999999999864

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=6.5e-06  Score=45.73  Aligned_cols=31  Identities=16%  Similarity=0.069  Sum_probs=28.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.++++|..|++.|||.+++||.|.++|..
T Consensus        48 ~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a~   78 (80)
T d1cvja1          48 NFQQPADAERALDTMNFDVIKGKPVRIMWSQ   78 (80)
T ss_dssp             EESSHHHHHHHHTTSTTCEETTEECEEEECC
T ss_pred             EECCHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence            4689999999999999999999999999863

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=2.5e-05  Score=44.31  Aligned_cols=27  Identities=11%  Similarity=0.151  Sum_probs=25.1

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEE
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVK   29 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Ae   29 (63)
                      +.+.|+|.+|++.|||..|+||.|.|.
T Consensus        63 f~~~~~A~~Ai~~lng~~~~gr~lkvS   89 (89)
T d2cpia1          63 YIRSEDALRAIQCVNNVVVDGRTLKAS   89 (89)
T ss_dssp             ESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             cccchhHHHHHHHhCCCEECCEEEEEC
Confidence            578999999999999999999999874

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=3.5e-05  Score=43.37  Aligned_cols=31  Identities=10%  Similarity=-0.007  Sum_probs=28.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||.+++||.|.+++..
T Consensus        53 ~f~~~~~A~~ai~~l~~~~i~g~~l~v~~a~   83 (89)
T d2cqba1          53 EFELAEDAAAAIDNMNESELFGRTIRVNLAK   83 (89)
T ss_dssp             CCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             EECCHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence            5789999999999999999999999999864

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=3.4e-05  Score=42.86  Aligned_cols=31  Identities=26%  Similarity=0.249  Sum_probs=28.2

Q ss_pred             CCCCHHHHHHHHHHHhccc-cCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAW-FNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRW-F~GR~I~Aey~p   32 (63)
                      .+.+.++|..|++.|||+. ++||.|.++|..
T Consensus        43 ~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~   74 (80)
T d2cqha1          43 DYPDQNWAIRAIETLSGKVELHGKIMEVDYSV   74 (80)
T ss_dssp             CCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred             EECCHHHHHHHHHHhCCCeEECCEEEEEEEcC
Confidence            4689999999999999997 999999999854

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=4.2e-05  Score=44.17  Aligned_cols=31  Identities=16%  Similarity=0.105  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|..|++.|||.+|+||.|.++|-.
T Consensus        66 ~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a~   96 (102)
T d2cpza1          66 SYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR   96 (102)
T ss_dssp             ECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             EeCCHHHHHHHHHHhCCCEECCEEEEEEEeC
Confidence            4689999999999999999999999999854

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=2.7e-05  Score=43.91  Aligned_cols=31  Identities=16%  Similarity=0.237  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||.+|+||.|.++|..
T Consensus        56 ~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ak   86 (90)
T d2cq0a1          56 SFHRREDAARAIAGVSGFGYDHLILNVEWAK   86 (90)
T ss_dssp             EESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEEEeee
Confidence            4678999999999999999999999999864

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=3.7e-05  Score=44.06  Aligned_cols=40  Identities=13%  Similarity=0.085  Sum_probs=34.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhhCc
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFP   41 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~FP   41 (63)
                      .+.+.++|.+|++.|||.-|.||.|.++|-+...+.....
T Consensus        52 ~f~~~~~A~~A~~~lng~~~~gr~l~v~~a~~~~~~~~~~   91 (111)
T d1whxa_          52 EFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQ   91 (111)
T ss_dssp             EESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTTCCCCC
T ss_pred             EEcCHHHHHHHHHHHcCCccCCCeEEEEECCCCccccccc
Confidence            3578999999999999999999999999998876665443

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=7.1e-05  Score=41.30  Aligned_cols=31  Identities=23%  Similarity=0.172  Sum_probs=28.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|..|++.|||.+++|+.|.++|..
T Consensus        45 ~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~   75 (79)
T d2bz2a1          45 TYEKMESADQAVAELNGTQVESVQLKVNIAR   75 (79)
T ss_dssp             ECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred             EEcccHHHHHHHHHhCCCEECCEEEEEEEec
Confidence            3678999999999999999999999999874

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=3.8e-05  Score=43.66  Aligned_cols=31  Identities=13%  Similarity=0.144  Sum_probs=28.6

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|..|++.|||..|.||.|.++|..
T Consensus        66 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ak   96 (102)
T d2cpxa1          66 TFPNKEIAWQALHLVNGYKLYGKILVIEFGK   96 (102)
T ss_dssp             ECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred             EeccHHHHHHHHHHhCCCEECCEEEEEEeCC
Confidence            4689999999999999999999999999864

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=3.5e-05  Score=42.24  Aligned_cols=31  Identities=26%  Similarity=0.409  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.++++|..|++.|||..|+||.|.++|..
T Consensus        50 ~f~~~~~a~~a~~~l~g~~~~g~~l~v~~Ak   80 (82)
T d1fxla1          50 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR   80 (82)
T ss_dssp             EESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            3679999999999999999999999999854

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=4.5e-05  Score=43.07  Aligned_cols=31  Identities=19%  Similarity=0.224  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|..|++.|||..|+|+.|.++|..
T Consensus        52 ~F~~~~~A~~A~~~~~~~~~~g~~l~v~~ak   82 (91)
T d1nu4a_          52 IFKEVSSATNALRSMQGFPFYDKPMRIQYAK   82 (91)
T ss_dssp             EESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEEEEeC
Confidence            4679999999999999999999999999863

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=97.38  E-value=6.4e-05  Score=42.75  Aligned_cols=31  Identities=13%  Similarity=0.121  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..++||.|.++|..
T Consensus        59 ~f~~~~~A~~A~~~l~~~~~~gr~i~V~~a~   89 (96)
T d1fjca_          59 EFKSEADAEKNLEEKQGAEIDGRSVSLYYTG   89 (96)
T ss_dssp             EESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred             EeCCHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence            3678999999999999999999999999864

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=2.9e-05  Score=45.62  Aligned_cols=31  Identities=16%  Similarity=0.023  Sum_probs=28.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..|.||.|.++|..
T Consensus        52 ~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~   82 (104)
T d1weya_          52 NFSNPLSAADARLRLHKTEFLGKEMKLYFAQ   82 (104)
T ss_dssp             ECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred             EECCHHHHHHHHHHhcccccCCCEeEEeecc
Confidence            3678999999999999999999999999974

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=9.7e-05  Score=40.64  Aligned_cols=32  Identities=16%  Similarity=0.208  Sum_probs=29.3

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      +.+.++|.+|++.|||.=|.||.|.+++.+.+
T Consensus        40 f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~d   71 (75)
T d1wi6a1          40 LLNGEQAEAAINTFHQSRLRERELSVQLQPTD   71 (75)
T ss_dssp             ESSHHHHHHHHHHHTTEESSSCEEEEEECCST
T ss_pred             ECCHHHHHHHHHHhCCccCCCCEEEEEEeCCC
Confidence            57899999999999999999999999998754

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=5.3e-05  Score=42.83  Aligned_cols=31  Identities=16%  Similarity=0.097  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++-.
T Consensus        64 ~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~a~   94 (101)
T d2cpea1          64 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR   94 (101)
T ss_dssp             EBSSHHHHHHHHHHHTTCEETTEECEEECSS
T ss_pred             EecCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            4679999999999999999999999999864

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=2.3e-05  Score=44.08  Aligned_cols=33  Identities=27%  Similarity=0.222  Sum_probs=29.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      .+.+.++|.+|++.|||..|.||.|.++|+...
T Consensus        41 ~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~~~~~   73 (87)
T d3begb1          41 EFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK   73 (87)
T ss_dssp             EESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred             EeCCHHHHHHHHHHhCCCEECCcEeEEeEEecC
Confidence            367899999999999999999999999887543

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=7.7e-05  Score=42.37  Aligned_cols=30  Identities=13%  Similarity=0.006  Sum_probs=27.6

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|..|++.|||.+++||.|.+++..
T Consensus        58 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A~   87 (93)
T d1x5ua1          58 FLSEEDADYAIKIMDMIKLYGKPIRVNKAS   87 (93)
T ss_dssp             ESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred             ECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence            578999999999999999999999998854

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=5.8e-05  Score=41.61  Aligned_cols=30  Identities=17%  Similarity=0.407  Sum_probs=27.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      .+.+.++|..|++.|||..++||.|.+++.
T Consensus        47 ~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a   76 (83)
T d1x5ta1          47 NFASFDASDAAIEAMNGQYLCNRPITVSYA   76 (83)
T ss_dssp             EBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred             EECCHHHHHHHHHhCCCcEECCEEEEEEEe
Confidence            468999999999999999999999999984

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=9.5e-05  Score=41.88  Aligned_cols=31  Identities=19%  Similarity=0.183  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.|||..|+||.|.+++-.
T Consensus        57 ~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~A~   87 (93)
T d2cq3a1          57 TFENSADADRAREKLHGTVVEGRKIEVNNAT   87 (93)
T ss_dssp             EESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence            3678999999999999999999999999854

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.28  E-value=6.7e-05  Score=42.17  Aligned_cols=30  Identities=17%  Similarity=0.140  Sum_probs=27.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      .+.+.++|.+|++.|||.-++||.|.++|-
T Consensus        55 ~f~~~~~A~~A~~~lng~~l~g~~l~V~~a   84 (88)
T d1rk8a_          55 EYETHKQALAAKEALNGAEIMGQTIQVDWC   84 (88)
T ss_dssp             EESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred             EECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence            467999999999999999999999999985

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=6.2e-05  Score=42.34  Aligned_cols=31  Identities=13%  Similarity=-0.019  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|..|++.|||.-|+||.|.++|-+
T Consensus        50 ~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A~   80 (86)
T d2cpja1          50 RLETRTLAEIAKVELDNMPLRGKQLRVRFAC   80 (86)
T ss_dssp             ECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            4678999999999999999999999999854

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00013  Score=41.08  Aligned_cols=32  Identities=19%  Similarity=0.143  Sum_probs=29.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|.+|++.|||.=|.||.|.++|.+.
T Consensus        46 ~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~~   77 (88)
T d1wg1a_          46 TLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT   77 (88)
T ss_dssp             CCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            46789999999999999999999999999864

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.26  E-value=7.2e-05  Score=44.74  Aligned_cols=31  Identities=16%  Similarity=0.021  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|..|++.|||.+|+||.|.++|..
T Consensus        90 ~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~  120 (139)
T d1u6fa1          90 KFQSGSSAQQAIAGLNGFNILNKRLKVALAA  120 (139)
T ss_dssp             EESSHHHHHHHHHHTTTEECSSCEEEEEESS
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            3678999999999999999999999999964

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00013  Score=42.20  Aligned_cols=32  Identities=16%  Similarity=0.112  Sum_probs=29.3

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      +.+.++|..|++.|||..|+||.|.++|....
T Consensus        53 f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~   84 (114)
T d2f9da1          53 YEDIFDAKNACDHLSGFNVCNRYLVVLYYNAN   84 (114)
T ss_dssp             ESSHHHHHHHHHHHTTCEETTEECEEEECCHH
T ss_pred             ECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            57899999999999999999999999997654

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00011  Score=41.67  Aligned_cols=31  Identities=13%  Similarity=0.024  Sum_probs=28.0

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.|+|..|++.|||-.|.||.|.++|-.
T Consensus        59 ~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a~   89 (95)
T d1x4aa1          59 EFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR   89 (95)
T ss_dssp             EESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEEEecc
Confidence            3678999999999999999999999999743

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.00011  Score=41.84  Aligned_cols=33  Identities=12%  Similarity=0.316  Sum_probs=29.2

Q ss_pred             CCCCHHHHHHHHHHH-hccccCCceeEEEEechh
Q psy2111           2 GEVGWEKKRRAYRTL-HGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         2 kc~s~e~A~~A~~~L-hGRWF~GR~I~Aey~p~~   34 (63)
                      .+.+.++|.+|++.| ||.-|+||.|.++|...+
T Consensus        57 ~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~A~~~   90 (94)
T d2cpha1          57 DFITKQDAKKAFNALCHSTHLYGRRLVLEWADSE   90 (94)
T ss_dssp             EESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCC
T ss_pred             EECCHHHHHHHHHHccCCcEECCEEEEEEEcCCC
Confidence            467999999999999 899999999999997543

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=9.2e-05  Score=41.10  Aligned_cols=30  Identities=17%  Similarity=0.186  Sum_probs=27.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      .+.++++|..|++.|||..++||.|.++|.
T Consensus        50 ~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~a   79 (86)
T d2cpda1          50 HFSNREDAVEAMKALNGKVLDGSPIEVTLA   79 (86)
T ss_dssp             EESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred             EeCCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence            367899999999999999999999999985

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=9.9e-05  Score=40.72  Aligned_cols=27  Identities=11%  Similarity=0.094  Sum_probs=24.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEE
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTV   28 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~A   28 (63)
                      .+.+.++|..|++.|||.-|+||.|.+
T Consensus        57 ~f~~~~~A~~Ai~~l~g~~~~gr~i~V   83 (83)
T d2cqca1          57 YFENVDDAKEAKERANGMELDGRRIRV   83 (83)
T ss_dssp             EESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             EECCHHHHHHHHHHcCCCEECCEEeEC
Confidence            467999999999999999999999975

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00016  Score=41.31  Aligned_cols=30  Identities=13%  Similarity=0.179  Sum_probs=28.1

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.++++|.+|++.|||.-|.||.|.++|..
T Consensus        47 f~~~~~A~~ai~~lng~~l~g~~l~v~~s~   76 (109)
T d2adca1          47 MADGNQAQLAMSHLNGHKLHGKPIRITLSK   76 (109)
T ss_dssp             ESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred             ECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            578999999999999999999999999964

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00027  Score=40.35  Aligned_cols=32  Identities=22%  Similarity=0.187  Sum_probs=29.0

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|..|++.|||..|+||.|.+++...
T Consensus        56 ~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a~~   87 (104)
T d1p1ta_          56 EYQDQETALSAMRNLNGREFSGRALRVDNAAS   87 (104)
T ss_dssp             ECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred             EECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            46899999999999999999999999998643

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.00026  Score=39.09  Aligned_cols=29  Identities=14%  Similarity=0.032  Sum_probs=26.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKY   30 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey   30 (63)
                      .|.+.|+|.+|++.|||.-++||.|.+++
T Consensus        57 ~f~~~e~a~~Ai~~l~~~~l~gr~i~v~l   85 (86)
T d2cqpa1          57 AFESRDEATAAVIDLNDRPIGSRKVKLVL   85 (86)
T ss_dssp             EESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred             EEcCcHHHHHHHHHcCCCEECCEEEEEEE
Confidence            36899999999999999999999999875

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00035  Score=39.81  Aligned_cols=35  Identities=20%  Similarity=0.193  Sum_probs=30.2

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHH
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYH   37 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~   37 (63)
                      .|.|.++|.+|++ |||..|+||.|.++........
T Consensus        56 ~F~s~~~a~~Al~-~n~~~i~gr~i~V~~~~~~~~~   90 (103)
T d2cpya1          56 QFKNEDDARKSER-LHRKKLNGREAFVHVVTLEDMR   90 (103)
T ss_dssp             ECSSHHHHHHHGG-GCSEEETTEEEEEEEECHHHHH
T ss_pred             EECCHHHHHHHHh-cCCCeECCcEEEEEECCHHHhh
Confidence            4789999999996 9999999999999988655444

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.95  E-value=0.00013  Score=42.00  Aligned_cols=33  Identities=24%  Similarity=0.198  Sum_probs=29.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE   34 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~   34 (63)
                      .+.+.|+|.+|++.|||.=|+||.|.+.|+.+.
T Consensus        56 ~f~~~~~a~~Ai~~lng~~~~g~~i~v~~~~~~   88 (98)
T d1wg4a_          56 EYLRKEDMEYALRKLDDTKFRSHEGETSYIRVY   88 (98)
T ss_dssp             EESSHHHHHHHHHHHSSEEEECTTSCEEEEEEE
T ss_pred             EECCHHHHHHHHHHhCCCEeCCeEEEEEEEecC
Confidence            367999999999999999999999999998653

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00022  Score=39.66  Aligned_cols=29  Identities=21%  Similarity=0.139  Sum_probs=25.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCc--eeEEEE
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSK--LVTVKY   30 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR--~I~Aey   30 (63)
                      .+.+.++|.+|++.|||..+.|+  .|.++|
T Consensus        54 ~f~~~~~a~~Ai~~lng~~~~G~~~~i~V~~   84 (85)
T d1fxla2          54 RFDKRIEAEEAIKGLNGQKPSGATEPITVKF   84 (85)
T ss_dssp             EESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             EEcCHHHHHHHHHHhCCCEeCCCCEEEEEEe
Confidence            35789999999999999999985  488876

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00038  Score=38.96  Aligned_cols=30  Identities=17%  Similarity=0.116  Sum_probs=27.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      .+.+.++|..|++.|||..+.||.|.+.|.
T Consensus        54 ~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a   83 (90)
T d2cqia1          54 EFYEHRDAAAALAAMNGRKILGKEVKVNWA   83 (90)
T ss_dssp             EESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             EECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence            367899999999999999999999999986

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00042  Score=38.46  Aligned_cols=31  Identities=10%  Similarity=0.127  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.++++|..|++.|||.-|+||.|.+++..
T Consensus        53 ~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a~   83 (90)
T d1x5sa1          53 TFENIDDAKDAMMAMNGKSVDGRQIRVDQAG   83 (90)
T ss_dssp             ECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred             EECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence            3679999999999999999999999999864

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.00042  Score=39.26  Aligned_cols=32  Identities=19%  Similarity=0.176  Sum_probs=28.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      .+.+.++|..|++.|||.-|+||.|.+++-..
T Consensus        56 ~f~~~~~a~~A~~~l~g~~~~gr~i~V~~a~~   87 (99)
T d1whwa_          56 TFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTI   87 (99)
T ss_dssp             EESSHHHHHHHHHHTTTEESSSCEEEEEECCC
T ss_pred             EECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            36789999999999999999999999987553

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00022  Score=40.75  Aligned_cols=30  Identities=13%  Similarity=0.105  Sum_probs=27.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      .+.+.++|.+|++.|||.-++||.|.++|-
T Consensus        60 ~f~~~~~A~~Ai~~l~~~~i~g~~l~v~~a   89 (96)
T d1x4ga1          60 RFSTHESAAHAIVSVNGTTIEGHVVKCYWG   89 (96)
T ss_dssp             EESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            357899999999999999999999999984

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.87  E-value=0.00028  Score=38.84  Aligned_cols=29  Identities=17%  Similarity=0.200  Sum_probs=27.1

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      +.+.++|.+|++.|||.-++||.|.+++.
T Consensus        50 f~~~~~A~~A~~~~~~~~~~g~~i~V~~a   78 (85)
T d2cpfa1          50 YKKPEQAQKALKQLQGHTVDGHKLEVRIS   78 (85)
T ss_dssp             ESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred             ECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            57899999999999999999999999875

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.00027  Score=39.41  Aligned_cols=29  Identities=10%  Similarity=0.182  Sum_probs=26.0

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++ |||..|+||.|.+++..
T Consensus        55 f~~~~~a~~Al~-~n~~~~~gr~l~V~~a~   83 (86)
T d2ghpa3          55 FENKDSAERALQ-MNRSLLGNREISVSLAD   83 (86)
T ss_dssp             ESSHHHHHHHGG-GTTEEETTEEEEEEECC
T ss_pred             ECCHHHHHHHHh-cCCCEECCEEEEEEEcC
Confidence            578999999996 99999999999999853

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.86  E-value=0.00045  Score=38.16  Aligned_cols=29  Identities=14%  Similarity=0.115  Sum_probs=26.0

Q ss_pred             CCCCHHHHHHHHHHHhccccCC--ceeEEEE
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNS--KLVTVKY   30 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~G--R~I~Aey   30 (63)
                      .+.+.++|..|++.|||..+.|  |.|.++|
T Consensus        54 ~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~~   84 (85)
T d1b7fa2          54 RYNKREEAQEAISALNNVIPEGGSQPLSVRL   84 (85)
T ss_dssp             EESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             EECCHHHHHHHHHHHCCCEeCCCCeEEEEEE
Confidence            3678999999999999999987  8899886

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00022  Score=39.91  Aligned_cols=30  Identities=23%  Similarity=0.257  Sum_probs=27.9

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|.+|++.|||.-++||.|.+++..
T Consensus        55 f~~~~~A~~Ai~~l~g~~~~g~~i~V~~a~   84 (89)
T d1cvja2          55 FETQEAAERAIEKMNGMLLNDRKVFVGRFK   84 (89)
T ss_dssp             ESCHHHHHHHTTSSSEEEETTEEEEEEECC
T ss_pred             ECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence            678999999999999999999999999864

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00057  Score=38.55  Aligned_cols=31  Identities=10%  Similarity=0.246  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|..|++.|||.-++||.|.++|-+
T Consensus        55 ~f~~~~~A~~Ai~~l~g~~~~gr~i~V~~a~   85 (93)
T d1h2vz_          55 EYYSRADAENAMRYINGTRLDDRIIRTDWDA   85 (93)
T ss_dssp             EESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            3578999999999999999999999999964

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00027  Score=39.36  Aligned_cols=31  Identities=19%  Similarity=0.142  Sum_probs=28.2

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~   33 (63)
                      +.++++|..|++.|||..++||.|.+++...
T Consensus        50 f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~~   80 (85)
T d2u2fa_          50 YVDINVTDQAIAGLNGMQLGDKKLLVQRASV   80 (85)
T ss_dssp             ESSSHHHHHHHHTSSSCCCSSSCCEEEECCC
T ss_pred             ECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            5688999999999999999999999998753

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.66  E-value=0.00073  Score=36.01  Aligned_cols=28  Identities=18%  Similarity=0.072  Sum_probs=24.9

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKY   30 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey   30 (63)
                      .+.+.|+|.+|++ |||.-|+||.|.++.
T Consensus        47 ~F~~~~~a~~al~-~~~~~l~gr~i~V~~   74 (75)
T d2msta_          47 TFESEDIVEKVCE-IHFHEINNKMVECKK   74 (75)
T ss_dssp             ECSCHHHHHHHHH-CSSCCBTTBCCEEEE
T ss_pred             EECCHHHHHHHHh-cCCCEECCeEEEEEE
Confidence            3678999999997 999999999999874

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00034  Score=37.41  Aligned_cols=25  Identities=8%  Similarity=0.036  Sum_probs=23.0

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeE
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVT   27 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~   27 (63)
                      +.+.++|.+|++.|||+-|+||+|.
T Consensus        47 f~~~~~A~~Ai~~lng~~~~Gr~~k   71 (72)
T d1x4ea1          47 FDSPSAAQKAVTALKASGVQAQMAK   71 (72)
T ss_dssp             ESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred             ECCHHHHHHHHHHhCCCEECCEECc
Confidence            5789999999999999999999873

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.59  E-value=0.00094  Score=37.79  Aligned_cols=31  Identities=10%  Similarity=0.178  Sum_probs=27.2

Q ss_pred             CCCCHHHHHHHHHHHhccccCC--ceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNS--KLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~G--R~I~Aey~p   32 (63)
                      .+.+.|+|..|++.|||..++|  +.|.++|..
T Consensus        59 ~f~~~~~A~~A~~~l~~~~i~g~~~~l~v~~ak   91 (97)
T d1whya_          59 QYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK   91 (97)
T ss_dssp             EESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred             ccCCHHHHHHHHHHhCCCEeCCCceEEEEEeCC
Confidence            3578999999999999999987  489999864

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.00079  Score=38.47  Aligned_cols=33  Identities=9%  Similarity=0.046  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYER   35 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~   35 (63)
                      .+.++|+|.+|++ |||..|+||.|.+.......
T Consensus        63 ~F~~~e~a~~a~~-~~~~~i~gR~i~V~~~~~~~   95 (104)
T d1wg5a_          63 QFASQEIAEKALK-KHKERIGHRYIEIFKSSRAE   95 (104)
T ss_dssp             EESSHHHHHHHHT-TTTCCSSSSCCEEEEECTTT
T ss_pred             EeCCHHHHHHHHh-hCCCEEcceEEEEEECCHHH
Confidence            4689999999886 99999999999998876554

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0005  Score=39.27  Aligned_cols=27  Identities=11%  Similarity=0.047  Sum_probs=24.2

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEE
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVK   29 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Ae   29 (63)
                      +.+.++|.+|++.|||+.+.||.+.+.
T Consensus        66 f~~~~~A~~Ai~~lng~~i~gr~~~v~   92 (101)
T d1x5oa1          66 MESTEKCEAVIGHFNGKFIKTPPGVSA   92 (101)
T ss_dssp             ESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred             eCCHHHHHHHHHHhCCCEECCcCCccC
Confidence            578999999999999999999987654

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.26  E-value=0.0021  Score=35.25  Aligned_cols=30  Identities=10%  Similarity=0.102  Sum_probs=25.9

Q ss_pred             CCCHHHHHHHHHHHhcccc-CCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWF-NSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF-~GR~I~Aey~p   32 (63)
                      +.+.++|..|++.|||.=| +|+.|.++|..
T Consensus        52 f~~~~~A~~A~~~l~g~~~~~~~~i~v~~ak   82 (83)
T d2b0ga1          52 FTTELQSNAAKEALQGFKITPTHAMKITFAK   82 (83)
T ss_dssp             ESSHHHHHHHHHHHTTCBSSTTCBCEEEECC
T ss_pred             cCCHHHHHHHHHHhCCcEeCCCcEEEEEEec
Confidence            5789999999999999666 68999999853

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.002  Score=35.46  Aligned_cols=30  Identities=17%  Similarity=0.159  Sum_probs=26.6

Q ss_pred             CCCHHHHHHHHHHHhcccc-CCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWF-NSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF-~GR~I~Aey~p   32 (63)
                      +.+.++|.+|+..|||.=+ +||.|.++|..
T Consensus        55 f~~~~~A~~A~~~l~~~~i~~g~~l~v~~sk   85 (88)
T d2adca2          55 MGSVEEAVQALIDLHNHDLGENHHLRVSFSK   85 (88)
T ss_dssp             ESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred             ECCHHHHHHHHHhccCCEecCCCEEEEEeCC
Confidence            5789999999999999755 79999999874

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=96.23  E-value=0.0012  Score=37.21  Aligned_cols=29  Identities=14%  Similarity=0.023  Sum_probs=26.0

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      .+.+.|+|.+|++ |||..++||.|.+++-
T Consensus        60 ~F~~~e~a~~Al~-~~g~~~~g~~i~V~~a   88 (91)
T d1fjeb1          60 DFESAEDLEKALE-LTGLKVFGNEIKLEKP   88 (91)
T ss_dssp             EESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred             eeCCHHHHHHHHh-cCCcEECCEEEEEEec
Confidence            3678999999996 9999999999999874

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0015  Score=37.26  Aligned_cols=30  Identities=13%  Similarity=-0.046  Sum_probs=26.3

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++ |||..++||.|.+.+..
T Consensus        61 eF~~~~~a~~Al~-~~~~~i~gR~I~V~~s~   90 (102)
T d1weza_          61 EFATHEDAVAAMA-KDKANMQHRYVELFLNS   90 (102)
T ss_dssp             ECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred             EECCHHHHHHHHH-cCCCEECCEEEEEEEcC
Confidence            3678999999986 89999999999998755

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.88  E-value=0.0036  Score=35.02  Aligned_cols=30  Identities=20%  Similarity=0.024  Sum_probs=26.6

Q ss_pred             CCCHHHHHHHHHHH--hccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTL--HGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~L--hGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|..|++.|  ||-.++||.|.+.|..
T Consensus        52 f~~~~~A~~A~~~l~~~~~~~~gr~l~V~~s~   83 (89)
T d1x4da1          52 MATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ   83 (89)
T ss_dssp             ESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred             EcchhhHHHHHHHHhhCCCccCCceEEEEECC
Confidence            57899999999976  6889999999999974

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.80  E-value=0.0038  Score=34.47  Aligned_cols=29  Identities=10%  Similarity=0.142  Sum_probs=26.0

Q ss_pred             CCCHHHHHHHHHHHh------ccccCCceeEEEEe
Q psy2111           3 EVGWEKKRRAYRTLH------GAWFNSKLVTVKYL   31 (63)
Q Consensus         3 c~s~e~A~~A~~~Lh------GRWF~GR~I~Aey~   31 (63)
                      +.+.++|.+|++.||      |..++||.|.+++.
T Consensus        57 F~~~~~a~~ai~~l~~~~~~~g~~~~gr~l~v~~a   91 (98)
T d1x4ha1          57 FMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLA   91 (98)
T ss_dssp             ESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECC
T ss_pred             EcCHHHHHHHHHHcccccccCCcEECCEEEEEEEC
Confidence            678999999999986      78899999999975

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.70  E-value=0.0057  Score=34.71  Aligned_cols=30  Identities=17%  Similarity=0.206  Sum_probs=26.7

Q ss_pred             CCCHHHHHHHHH--HHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYR--TLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~--~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.++|..|++  .+||-.|+||.|.++|..
T Consensus        62 f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s~   93 (99)
T d1x4fa1          62 METREDAMAMVDHCLKKALWFQGRCVKVDLSE   93 (99)
T ss_dssp             CSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred             ecchHHHHHHHHHHhcCCceECCEEEEEEEcC
Confidence            578999999998  578889999999999874

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0041  Score=35.91  Aligned_cols=36  Identities=11%  Similarity=0.099  Sum_probs=30.6

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHh
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHE   38 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~   38 (63)
                      .|.+.|+|.+|++ |||.-++||.|.+.......+..
T Consensus        66 eF~~~e~a~~al~-~~~~~i~gR~i~V~~~~~~~~~~  101 (112)
T d1wela1          66 EFRNEADYKAALC-RHKQYMGNRFIQVHPITKKGMLE  101 (112)
T ss_dssp             EBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHHHHH
T ss_pred             EECCHHHHHHHHH-cCCCcCCCEEEEEEEcChHHHHH
Confidence            3678999998886 99999999999999887776644

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0041  Score=35.01  Aligned_cols=30  Identities=13%  Similarity=0.053  Sum_probs=24.9

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.|+|.+|+ .|||..|+||.|.+++..
T Consensus        63 ~f~~~e~a~~~~-~~~~~~~~gr~l~V~~a~   92 (104)
T d1wi8a_          63 EFEDLDSLLSAL-SLNEESLGNKRIRVDVAD   92 (104)
T ss_dssp             EESSHHHHHHHH-GGGTCEETTEECEEEECC
T ss_pred             EECCHHHHHHHH-HcCCCEECCEEEEEEECC
Confidence            367899997665 699999999999998853

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0024  Score=36.44  Aligned_cols=30  Identities=10%  Similarity=0.068  Sum_probs=26.4

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.|+|.+|++.+|| .++||.|.+++..
T Consensus        58 ~f~~~~~A~~Ai~~~~~-~l~Gr~l~V~~a~   87 (103)
T d2cqda1          58 TMADRAAAERACKDPNP-IIDGRKANVNLAY   87 (103)
T ss_dssp             EESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred             EECCHHHHHHHHHHCCC-cCCCEEEEEEEcC
Confidence            46799999999999998 6899999998754

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.53  E-value=0.0041  Score=33.71  Aligned_cols=28  Identities=14%  Similarity=0.021  Sum_probs=24.8

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      +.+.++|.+|+ .|||.-|+||.|.++.+
T Consensus        47 F~~~~~a~~Al-~~~~~~i~g~~i~V~~~   74 (75)
T d2ghpa2          47 FARYDGALAAI-TKTHKVVGQNEIIVSHL   74 (75)
T ss_dssp             ESSHHHHHHHH-TTTTCEETTEECEEEEC
T ss_pred             EcchHHhHHHH-HhcCcEECCEEEEEEEC
Confidence            57899999998 48999999999999864

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0044  Score=35.50  Aligned_cols=29  Identities=14%  Similarity=-0.001  Sum_probs=25.8

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.+.|+|.+|+. |||.-|+||.|.+++..
T Consensus        67 F~~~e~a~~A~~-l~g~~~~G~~l~V~~a~   95 (101)
T d2cq4a1          67 FCEIQSVPLAIG-LTGQRLLGVPIIVQASQ   95 (101)
T ss_dssp             ESCGGGHHHHHH-HTTEEETTEEEEEEEHH
T ss_pred             ECCHHHHHHHHH-HCCCEECCEEEEEEECC
Confidence            578899999995 99999999999999854

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.005  Score=33.20  Aligned_cols=27  Identities=15%  Similarity=-0.004  Sum_probs=23.7

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEE
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVK   29 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Ae   29 (63)
                      .+.+.++|.+|++ +||-.++||.|.++
T Consensus        47 ~f~~~~~a~~Al~-~~~~~l~Gr~i~V~   73 (75)
T d1hd0a_          47 LFKESESVDKVMD-QKEHKLNGKVIDPK   73 (75)
T ss_dssp             EESSHHHHHHHHH-TCCCCBTTBCCEEC
T ss_pred             EECCHHHHHHHHh-cCCCEECCCEEEee
Confidence            3679999999997 79999999999874

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.012  Score=33.49  Aligned_cols=33  Identities=9%  Similarity=0.068  Sum_probs=28.1

Q ss_pred             CCCHHHHHHHHHHHhcccc--CCceeEEEEechhh
Q psy2111           3 EVGWEKKRRAYRTLHGAWF--NSKLVTVKYLRYER   35 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF--~GR~I~Aey~p~~~   35 (63)
                      +.+.|+|..|++.|||+=+  .|+.|.+.|.....
T Consensus        52 f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~~s~~~~   86 (108)
T d2adba1          52 YADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS   86 (108)
T ss_dssp             ESCHHHHHHHHHHHHSCCSSTTCCCCEEEECSSCS
T ss_pred             ECCHHHHHHHHHHHCCCEeccCCcEEEEEecCCcc
Confidence            5789999999999999976  68999999876543

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.67  E-value=0.0055  Score=34.20  Aligned_cols=29  Identities=21%  Similarity=0.193  Sum_probs=24.1

Q ss_pred             CCCCHHHHHHHHHHHhccccCCc-eeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSK-LVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR-~I~Aey~   31 (63)
                      ++.+.++|.+|++ |||.=|+|| +|.+.--
T Consensus        45 ~f~~~~~A~~Al~-~nG~~~~g~~~vgV~~~   74 (81)
T d1wwha1          45 RYQSKLQARKALS-KDGRIFGESIMIGVKPC   74 (81)
T ss_dssp             EESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred             EEcccHHHHHHHh-cCCCeECCcEEEEEEeC
Confidence            4789999999996 999999998 5666543

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.018  Score=31.47  Aligned_cols=31  Identities=6%  Similarity=-0.009  Sum_probs=26.1

Q ss_pred             CCCHHHHHHHHHHHh--ccccCCceeEEEEech
Q psy2111           3 EVGWEKKRRAYRTLH--GAWFNSKLVTVKYLRY   33 (63)
Q Consensus         3 c~s~e~A~~A~~~Lh--GRWF~GR~I~Aey~p~   33 (63)
                      +.+.|+|..|++.|+  +.-++||.|.++|...
T Consensus        51 f~~~e~A~~a~~~~~~~~~~~~g~~l~v~~sk~   83 (88)
T d2cq1a1          51 LATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH   83 (88)
T ss_dssp             ESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred             eCCHHHHHHHHHHHccCCCccCCCEEEEEECCC
Confidence            468999999999765  6789999999999753

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.23  E-value=0.013  Score=32.56  Aligned_cols=30  Identities=13%  Similarity=0.049  Sum_probs=25.9

Q ss_pred             CCCCHHHHHHHHHHHhcccc--CCceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWF--NSKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF--~GR~I~Aey~   31 (63)
                      .+.+.++|..|++.|++-.|  +||.|.++|-
T Consensus        51 ~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~~A   82 (96)
T d2disa1          51 EYESHRAAAMARRKLMPGRIQLWGHQIAVDWA   82 (96)
T ss_dssp             EESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred             EEcCHHHHHHHHHHHcCCCeEECCEEEEEEEc
Confidence            36789999999999987665  6999999986

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.07  E-value=0.012  Score=31.91  Aligned_cols=28  Identities=11%  Similarity=-0.034  Sum_probs=24.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKY   30 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey   30 (63)
                      .+.+.++|.+|++ +||--++||.|.++.
T Consensus        48 ~f~~~~~a~~al~-~~~~~i~Gr~i~V~~   75 (77)
T d1uawa_          48 TFMDQAGVDKVLA-QSRHELDSKTIDPKV   75 (77)
T ss_dssp             CCCCTTHHHHHHH-TTTCCCSSCCCEEEE
T ss_pred             EECCHHHHHHHHH-cCCCEECCeEEEEEE
Confidence            4678999999997 699999999999874

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.51  E-value=0.034  Score=31.30  Aligned_cols=30  Identities=3%  Similarity=0.035  Sum_probs=25.9

Q ss_pred             CCCHHHHHHHHHHHhcc--ccCCceeEEEEec
Q psy2111           3 EVGWEKKRRAYRTLHGA--WFNSKLVTVKYLR   32 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGR--WF~GR~I~Aey~p   32 (63)
                      +.++|+|..|++.||+.  .++|+.|.+.|..
T Consensus        58 f~~~e~A~~ai~~~~~~~~~~~g~~l~v~~s~   89 (104)
T d1wexa_          58 FENIDSAKECVTFAADVPVYIAGQQAFFNYST   89 (104)
T ss_dssp             ESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred             eCCHHHHHHHHHHHcCCCcEEeeEEEEEEEcC
Confidence            57899999999999765  5789999999874

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.48  E-value=0.026  Score=29.97  Aligned_cols=27  Identities=7%  Similarity=-0.143  Sum_probs=23.3

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKY   30 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey   30 (63)
                      +.++|+|.+|++ |||.=++||.|.++.
T Consensus        51 f~~~e~~~~al~-~~~~~l~Gr~i~V~~   77 (79)
T d1l3ka2          51 FDDHDSVDKIVI-QKYHTVNGHNCEVRK   77 (79)
T ss_dssp             ESSHHHHHHHHH-CSCCEETTEECEEEE
T ss_pred             EcCHHHHHHHHH-hCCCEECCEEEEEEE
Confidence            568898888885 899999999999874

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.023  Score=31.68  Aligned_cols=29  Identities=10%  Similarity=0.158  Sum_probs=24.5

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      .+.+.++|.+|++.+|  .++||.|.+++..
T Consensus        56 ~f~~~~~a~~al~~~~--~l~Gr~i~v~~a~   84 (90)
T d2cqga1          56 RFTEYETQVKVMSQRH--MIDGRWCDCKLPN   84 (90)
T ss_dssp             EESSHHHHHHHHHSCE--EETTEEEEEECCC
T ss_pred             EECCHHHHHHHHhcCC--ccCCEEeEEEeCC
Confidence            3678999999999766  7999999998753

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.05  E-value=0.047  Score=29.71  Aligned_cols=27  Identities=15%  Similarity=0.027  Sum_probs=23.4

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKY   30 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey   30 (63)
                      +.+.++|.+|++ ++|-.++||.|.++-
T Consensus        55 f~~~~~a~~ai~-~~~~~i~Gr~i~V~~   81 (84)
T d1l3ka1          55 YATVEEVDAAMN-ARPHKVDGRVVEPKR   81 (84)
T ss_dssp             ESSHHHHHHHHH-TCSCEETTEECEEEE
T ss_pred             EcCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence            578999999997 588999999998863

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.079  Score=29.96  Aligned_cols=23  Identities=30%  Similarity=0.299  Sum_probs=19.0

Q ss_pred             CCCCHHHHHHHHHHHhcccc-CCc
Q psy2111           2 GEVGWEKKRRAYRTLHGAWF-NSK   24 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF-~GR   24 (63)
                      .+.+.|+|..|++.|||+.. +|+
T Consensus        62 ~f~~~e~A~~A~~~lng~~i~~~~   85 (101)
T d2cq2a1          62 RYRTTEESKRAYVTLNGKEVVDDL   85 (101)
T ss_dssp             EESSHHHHHHHHHHTTTCEEECTT
T ss_pred             EECCHHHHHHHHHHhCCCCCCCCC
Confidence            36789999999999999876 443

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.21  E-value=0.077  Score=30.20  Aligned_cols=31  Identities=19%  Similarity=0.091  Sum_probs=28.2

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR   32 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p   32 (63)
                      +.++.++|.-|+..||-|=+++|-|.+.|..
T Consensus        41 ~v~~~q~A~~~v~~LhR~KiG~KRI~Vs~~~   71 (73)
T d2dgxa1          41 QMENLQDAIGAVNSLHRYKIGSKKILVSLAT   71 (73)
T ss_dssp             EESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             EcCCHHHHHHHHHHHHHHhcCCeEEEEEEec
Confidence            4578999999999999999999999999863

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.06  Score=29.30  Aligned_cols=28  Identities=7%  Similarity=0.058  Sum_probs=24.8

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      +.+.|+|.+|++ +||-=|.||.|.+++-
T Consensus        54 f~~~e~a~~al~-~~~~~~~g~~l~v~~~   81 (85)
T d1zh5a2          54 FDSIESAKKFVE-TPGQKYKETDLLILFK   81 (85)
T ss_dssp             ESCHHHHHHHHT-CCCCEETTEECEEEEG
T ss_pred             EcCHHHHHHHHH-HCCCEECCEEEEEEEc
Confidence            578999999996 6999999999999863

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.57  E-value=0.0034  Score=34.63  Aligned_cols=26  Identities=12%  Similarity=0.263  Sum_probs=23.0

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEE
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVK   29 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Ae   29 (63)
                      +.|.|+|.+|++ |||.-|.||.|.++
T Consensus        55 f~~~e~a~~a~~-l~g~~~~Gr~l~V~   80 (90)
T d1u2fa_          55 FRSVDETTQAMA-FDGIIFQGQSLKIR   80 (90)
T ss_dssp             ESSCTTTTTGGG-GSSCCSSSSCCCCB
T ss_pred             eCCHHHHHHHHh-hCCcEECCEEEEEC
Confidence            578899999985 99999999999984

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.84  E-value=0.092  Score=29.75  Aligned_cols=28  Identities=11%  Similarity=-0.019  Sum_probs=24.2

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      +.+.++|.+|++ +||--|+||.|.+++.
T Consensus        69 f~~~~~a~~al~-~~~~~l~G~~i~V~~a   96 (103)
T d1x4ba1          69 FSSMAEVDAAMA-ARPHSIDGRVVEPKRA   96 (103)
T ss_dssp             CSSHHHHHHHHT-SCSEEETTEEEEEECC
T ss_pred             ECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence            578999999986 6888999999999874

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.11  E-value=0.073  Score=28.59  Aligned_cols=27  Identities=7%  Similarity=-0.130  Sum_probs=22.7

Q ss_pred             CCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111           3 EVGWEKKRRAYRTLHGAWFNSKLVTVKY   30 (63)
Q Consensus         3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey   30 (63)
                      +.+.++|.+|++. ++..++||.|.++.
T Consensus        48 f~~~~~a~~al~~-~~~~i~g~~i~vk~   74 (75)
T d1x0fa1          48 FKEEEPVKKIMEK-KYHNVGLSKCEIKV   74 (75)
T ss_dssp             ESSSHHHHHHTTC-SSCCBTTBCCEEEC
T ss_pred             ECCHHHHHHHHhh-CCCEECCEEeEEEE
Confidence            5788999999975 77899999998864

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.69  E-value=0.27  Score=28.77  Aligned_cols=29  Identities=7%  Similarity=-0.159  Sum_probs=24.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      .+.+.++|.+|++ ++|--++|+.|.+.+-
T Consensus       145 ~f~~~e~A~~Al~-~~~~~~~G~~i~V~~A  173 (183)
T d1u1qa_         145 TFDDHDSVDKIVI-QKYHTVNGHNCEVRKA  173 (183)
T ss_dssp             EESCHHHHHHHHT-SSCEEETTEEEEEEEC
T ss_pred             EECCHHHHHHHHH-hCCCeECCEEEEEEec
Confidence            3678999999997 6777899999999873

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.91  E-value=0.25  Score=26.69  Aligned_cols=28  Identities=4%  Similarity=-0.152  Sum_probs=23.8

Q ss_pred             CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111           2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL   31 (63)
Q Consensus         2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~   31 (63)
                      .+.+.++|..|+.  +|--++||.|.+++.
T Consensus        48 ~f~~~~~a~~a~~--~~~~i~g~~l~v~~a   75 (88)
T d1wf0a_          48 TFADDQIAQSLCG--EDLIIKGISVHISNA   75 (88)
T ss_dssp             ECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred             EECCHHHHHHHHh--CCCEECCEEeEEEeC
Confidence            3678999999986  777899999999875