Psyllid ID: psy2130

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
Protein Sequence
GPNISALEKEIGPDRFPPNERYFGLVNGKTCKEKEDRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRDSTDARTMNSNDCRVNGS
Secondary Structure (PSIPRED)
cccccHHHHHHccccccccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEEEEEcEEEEEccccccccccccEEccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccEEEcEEEEccccccccccccccccccccEEEEEEEEEccccccccEEEEEEEEccEEEEEEccccEEEcHHHHHHHHccccccccccccEEEEEEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHcHHcccccccEEEEEccccccHHHHHHEcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHccEEEEEEEEEEEccccccccccccEEEEEccccccHHHHHHHcccccHccccccccHHHcccccccccccccHHHHHccccccccccccccEEccccccccHHHHHHHHccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHEEEcccccEEEEEHHHHHHHHHcccccEEEEEEEcccEEEEcccccccccccEEEEEEEEEEEEcccccccEEEEEEEEcccEEEEcccccccccHHHHHHHHcccccccccccEEEEEEEEEcccccccccccccEEEccc
Coil and Loop (DISEMBL)
GPNISALEkeigpdrfppneryfglvngktckekedrieksqpfweqtslqdkislgweCSLILEldlcssdefdnyMQQDAHEFLNFLINHINEvilserpqsnaksklsapdggggdnhsssgfeeptwVHEIFQGILTsetkclncetvsskdedffdlqvdikqntsitqclrgfsstetlcsdnkfkcdncasyqeaqgpnisalekeigpdrfppneryfglvnfgntcysnsvlqalyfckpFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHkkkvgsiapKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLfhlsddavnpdrMYNLVAVVIHcgsgpnrghYISIVKSHdfwllfdddvvdkidqstiedffgltsdhqkssetgYILFYQsrdstdartmnsndcrvngs
Flexible Loop (DISEMBL)
gpnisalekeigpdrfppneryFGLVNGKTCKEKEDRIeksqpfweqtslqdKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIathkkkvgsiapkkFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFfgltsdhqkssetGYILFYQsrdstdartmnsndcrvngs
Low Complexity Region (SEG)
GPNISALEKEIGPDRFPPNERYFGLVNGKTCKEKEDRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPdggggdnhsssgFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHdfwllfdddvvdKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRDSTDARTMNSNDCRVNGS
Disordered region (IsUnstruct)
*********************YFGLVNGK**************FWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVIL******************************PTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQ******************FPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSD******TGYILFY*********************
Disordered Region (DISOPRED)
*****AL*KEIGPDRFPPNERYFGLVNGKTCKEKEDRIEKSQPFWE****************ILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVI********************************TWVHEIFQGILTSETKCLNCET*SSKDEDFFDL***************GFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTS**QKSSETGYILF**********************
Disordered Region (DISEMBL)
GPNISALEKEIGPDRFPPNERYFGLVNGKTCKEKEDRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERP**********************GFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRDSTDARTMNSNDCRVNGS
Disordered Region (DISPRO)
*****ALEKEIGPDRFPPNERYFGLVNGKTCKEKEDRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQ************************EPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASY************K*IGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRD*****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GPNISALEKEIGPDRFPPNERYFGLVNGKTCKEKEDRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRDSTDARTMNSNDCRVNGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	470	2.2.26 [Sep-21-2011]
A5D9H7	369	Ubiquitin carboxyl-termin	yes	N/A	0.268	0.341	0.795	5e-57
O75317	370	Ubiquitin carboxyl-termin	yes	N/A	0.268	0.340	0.795	5e-57
Q52KZ6	370	Ubiquitin carboxyl-termin	N/A	N/A	0.268	0.340	0.795	6e-57
Q5M981	370	Ubiquitin carboxyl-termin	N/A	N/A	0.268	0.340	0.795	6e-57
Q9D9M2	370	Ubiquitin carboxyl-termin	yes	N/A	0.197	0.251	0.787	1e-56
A4FUN7	371	Ubiquitin carboxyl-termin	no	N/A	0.268	0.339	0.755	3e-55
C0HB46	372	Ubiquitin carboxyl-termin	N/A	N/A	0.206	0.260	0.755	4e-55
Q5RBQ4	366	Ubiquitin carboxyl-termin	no	N/A	0.270	0.346	0.757	7e-55
P62069	366	Ubiquitin carboxyl-termin	no	N/A	0.270	0.346	0.757	7e-55
P62068	366	Ubiquitin carboxyl-termin	no	N/A	0.270	0.346	0.757	7e-55

>sp|A5D9H7|UBP12_BOVIN Ubiquitin carboxyl-terminal hydrolase 12 OS=Bos taurus GN=USP12 PE=2 SV=1

 Score =  222 bits (566), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 101/127 (79%), Positives = 117/127 (92%)

Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLV 386
           K MKVKKLPMILALHLKRFKYMD+++R+ K+S+RVVFPLELRLF+ S DA NPDRMY+LV
Sbjct: 243 KRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMYDLV 302

Query: 387 AVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYI 446
           AVV+HCGSGPNRGHYI+IVKSHDFWLLFDDD+V+KID   IE+F+GLTSD  K+SE+GYI
Sbjct: 303 AVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYI 362

Query: 447 LFYQSRD 453
           LFYQSRD
Sbjct: 363 LFYQSRD 369

Deubiquitinating enzyme. Has almost no deubiquitinating activity by itself and requires the interaction with WDR48 to have a high activity. Not involved in deubiquitination of monoubiquitinated FANCD2.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|O75317|UBP12_HUMAN Ubiquitin carboxyl-terminal hydrolase 12 OS=Homo sapiens GN=USP12 PE=1 SV=2

 Score =  222 bits (565), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 101/127 (79%), Positives = 117/127 (92%)

Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLV 386
           K MKVKKLPMILALHLKRFKYMD+++R+ K+S+RVVFPLELRLF+ S DA NPDRMY+LV
Sbjct: 244 KRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMYDLV 303

Query: 387 AVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYI 446
           AVV+HCGSGPNRGHYI+IVKSHDFWLLFDDD+V+KID   IE+F+GLTSD  K+SE+GYI
Sbjct: 304 AVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYI 363

Query: 447 LFYQSRD 453
           LFYQSRD
Sbjct: 364 LFYQSRD 370

Deubiquitinating enzyme. Has almost no deubiquitinating activity by itself and requires the interaction with WDR48 to have a high activity. Not involved in deubiquitination of monoubiquitinated FANCD2.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q52KZ6|UB12A_XENLA Ubiquitin carboxyl-terminal hydrolase 12-A OS=Xenopus laevis GN=usp12-a PE=2 SV=1

 Score =  222 bits (565), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 101/127 (79%), Positives = 117/127 (92%)

Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLV 386
           K MKVKKLPMILALHLKRFKYMD+++R+ K+S+RVVFPLELRLF+ S DA NPDRMY+LV
Sbjct: 244 KRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMYDLV 303

Query: 387 AVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYI 446
           AVV+HCGSGPNRGHYI+IVKSHDFWLLFDDD+V+KID   IE+F+GLTSD  K+SE+GYI
Sbjct: 304 AVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYI 363

Query: 447 LFYQSRD 453
           LFYQSRD
Sbjct: 364 LFYQSRD 370

Deubiquitinating enzyme. Has almost no deubiquitinating activity by itself and requires the interaction with wdr48 to have a high activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5M981|UB12B_XENLA Ubiquitin carboxyl-terminal hydrolase 12-B OS=Xenopus laevis GN=usp12-b PE=2 SV=2

 Score =  222 bits (565), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 101/127 (79%), Positives = 117/127 (92%)

Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLV 386
           K MKVKKLPMILALHLKRFKYMD+++R+ K+S+RVVFPLELRLF+ S DA NPDRMY+LV
Sbjct: 244 KRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMYDLV 303

Query: 387 AVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYI 446
           AVV+HCGSGPNRGHYI+IVKSHDFWLLFDDD+V+KID   IE+F+GLTSD  K+SE+GYI
Sbjct: 304 AVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYI 363

Query: 447 LFYQSRD 453
           LFYQSRD
Sbjct: 364 LFYQSRD 370

Deubiquitinating enzyme. Has almost no deubiquitinating activity by itself and requires the interaction with wdr48 to have a high activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9D9M2|UBP12_MOUSE Ubiquitin carboxyl-terminal hydrolase 12 OS=Mus musculus GN=Usp12 PE=2 SV=2

 Score =  221 bits (562), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 100/127 (78%), Positives = 117/127 (92%)

Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLV 386
           K MKVKKLP+ILALHLKRFKYMD+++R+ K+S+RVVFPLELRLF+ S DA NPDRMY+LV
Sbjct: 244 KRMKVKKLPLILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMYDLV 303

Query: 387 AVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYI 446
           AVV+HCGSGPNRGHYI+IVKSHDFWLLFDDD+V+KID   IE+F+GLTSD  K+SE+GYI
Sbjct: 304 AVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYI 363

Query: 447 LFYQSRD 453
           LFYQSRD
Sbjct: 364 LFYQSRD 370

Deubiquitinating enzyme. Has almost no deubiquitinating activity by itself and requires the interaction with WDR48 to have a high activity. Not involved in deubiquitination of monoubiquitinated FANCD2.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|A4FUN7|UBP12_DANRE Ubiquitin carboxyl-terminal hydrolase 12A OS=Danio rerio GN=usp12a PE=2 SV=1

 Score =  216 bits (550), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 96/127 (75%), Positives = 116/127 (91%)

Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLV 386
           K M+VKKLPMILALHLKRFKYM+++ R+ K+S+RVVFPLELRLF+ S DA NP+R+Y+LV
Sbjct: 245 KRMRVKKLPMILALHLKRFKYMEQLQRYTKLSYRVVFPLELRLFNTSGDATNPERLYDLV 304

Query: 387 AVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYI 446
           AVV+HCGSGPNRGHYI+IVKSHDFWLLFDDD+V+KID   IE+F+GLTS+  K+SE+GYI
Sbjct: 305 AVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSEISKNSESGYI 364

Query: 447 LFYQSRD 453
           LFYQSRD
Sbjct: 365 LFYQSRD 371

Deubiquitinating enzyme. Has almost no deubiquitinating activity by itself and requires the interaction with wdr48 to have a high activity.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|C0HB46|UBP12_SALSA Ubiquitin carboxyl-terminal hydrolase 12 OS=Salmo salar GN=usp12 PE=2 SV=1

 Score =  216 bits (549), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 96/127 (75%), Positives = 116/127 (91%)

Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLV 386
           K M+VKKLPMILALHLKRFKYM+++ R+ K+S+RVVFPLELRLF+ S DA NP+R+Y+LV
Sbjct: 246 KRMRVKKLPMILALHLKRFKYMEQLQRYTKLSYRVVFPLELRLFNTSGDATNPERLYDLV 305

Query: 387 AVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYI 446
           AVV+HCGSGPNRGHYI+IVKSHDFWLLFDDD+V+KID   IE+F+GLTS+  K+SE+GYI
Sbjct: 306 AVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSEISKNSESGYI 365

Query: 447 LFYQSRD 453
           LFYQSRD
Sbjct: 366 LFYQSRD 372

Deubiquitinating enzyme. Has almost no deubiquitinating activity by itself and requires the interaction with wdr48 to have a high activity.

Salmo salar (taxid: 8030)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5RBQ4|UBP46_PONAB Ubiquitin carboxyl-terminal hydrolase 46 OS=Pongo abelii GN=USP46 PE=2 SV=1

 Score =  215 bits (547), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 97/128 (75%), Positives = 117/128 (91%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNL 385
           +K M+VKKLPMILALHLKRFKYM++++R+ K+S+RVVFPLELRLF+ S DAVN DRMY+L
Sbjct: 239 QKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDL 298

Query: 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
           VAVV+HCGSGPNRGHYI+IVKSH FWLLFDDD+V+KID   IE+F+GLTSD  K+SE+GY
Sbjct: 299 VAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGY 358

Query: 446 ILFYQSRD 453
           ILFYQSR+
Sbjct: 359 ILFYQSRE 366

Deubiquitinating enzyme that plays a role in behavior, possibly by regulating GABA action. May act by mediating the deubiquitination of GAD1/GAD67. Has almost no deubiquitinating activity by itself and requires the interaction with WDR48 to have a high activity. Not involved in deubiquitination of monoubiquitinated FANCD2.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|P62069|UBP46_MOUSE Ubiquitin carboxyl-terminal hydrolase 46 OS=Mus musculus GN=Usp46 PE=1 SV=1

 Score =  215 bits (547), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 97/128 (75%), Positives = 117/128 (91%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNL 385
           +K M+VKKLPMILALHLKRFKYM++++R+ K+S+RVVFPLELRLF+ S DAVN DRMY+L
Sbjct: 239 QKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDL 298

Query: 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
           VAVV+HCGSGPNRGHYI+IVKSH FWLLFDDD+V+KID   IE+F+GLTSD  K+SE+GY
Sbjct: 299 VAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGY 358

Query: 446 ILFYQSRD 453
           ILFYQSR+
Sbjct: 359 ILFYQSRE 366

Deubiquitinating enzyme that plays a role in behavior, possibly by regulating GABA action. May act by mediating the deubiquitination of GAD1/GAD67. Has almost no deubiquitinating activity by itself and requires the interaction with WDR48 to have a high activity. Not involved in deubiquitination of monoubiquitinated FANCD2.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|P62068|UBP46_HUMAN Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo sapiens GN=USP46 PE=1 SV=1

 Score =  215 bits (547), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 97/128 (75%), Positives = 117/128 (91%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNL 385
           +K M+VKKLPMILALHLKRFKYM++++R+ K+S+RVVFPLELRLF+ S DAVN DRMY+L
Sbjct: 239 QKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDL 298

Query: 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
           VAVV+HCGSGPNRGHYI+IVKSH FWLLFDDD+V+KID   IE+F+GLTSD  K+SE+GY
Sbjct: 299 VAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGY 358

Query: 446 ILFYQSRD 453
           ILFYQSR+
Sbjct: 359 ILFYQSRE 366

Deubiquitinating enzyme that plays a role in behavior, possibly by regulating GABA action. May act by mediating the deubiquitination of GAD1/GAD67. Has almost no deubiquitinating activity by itself and requires the interaction with WDR48 to have a high activity. Not involved in deubiquitination of monoubiquitinated FANCD2.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
344237274	262	Ubiquitin carboxyl-terminal hydrolase 12	0.527	0.946	0.674	1e-96
328698286	385	PREDICTED: ubiquitin carboxyl-terminal h	0.202	0.246	0.885	3e-64
242006825	344	ubiquitin carboxyl-terminal hydrolase, p	0.227	0.311	0.869	4e-61
403182891	666	AAEL017004-PA [Aedes aegypti]	0.189	0.133	0.853	6e-61
189236253	354	PREDICTED: similar to conserved hypothet	0.231	0.307	0.868	2e-60
270005509	366	hypothetical protein TcasGA2_TC007573 [T	0.210	0.270	0.868	2e-60
170031964	380	conserved hypothetical protein [Culex qu	0.172	0.213	0.853	2e-60
357614773	377	hypothetical protein KGM_20368 [Danaus p	0.202	0.251	0.846	3e-60
332019434	470	Ubiquitin carboxyl-terminal hydrolase 46	0.195	0.195	0.853	4e-60
322790247	355	hypothetical protein SINV_08745 [Solenop	0.2	0.264	0.853	7e-60

>gi|344237274|gb|EGV93377.1| Ubiquitin carboxyl-terminal hydrolase 12 [Cricetulus griseus]

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 178/264 (67%), Positives = 209/264 (79%), Gaps = 16/264 (6%)

Query: 204 GPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKK 263
           G N SALEKEIGP++FP NE YFGLVNFGNTCY NSVLQALYFC+PFR++VL YK++ +K
Sbjct: 1   GANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQPRK 60

Query: 264 NKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKD--------------EFDNYM 309
            KE LL+CLADLFH+IAT KKKVG I PKKFITRLRKE                + D+Y 
Sbjct: 61  -KENLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENGNSSSSRVLLLMCPWKVDHYY 119

Query: 310 QQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRL 369
                      +  +  + MKVKKLPMILALHLKRFKYMD+++R+ K+S+RVVFPLELRL
Sbjct: 120 CGANDRSTIITVEQMKHR-MKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRL 178

Query: 370 FHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIED 429
           F+ S DA NPDRMY+LVAVV+HCGSGPNRGHYI+IVKSHDFWLLFDDD+V+KID   IE+
Sbjct: 179 FNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEE 238

Query: 430 FFGLTSDHQKSSETGYILFYQSRD 453
           F+GLTSD  K+SE+GYILFYQSRD
Sbjct: 239 FYGLTSDISKNSESGYILFYQSRD 262

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328698286|ref|XP_001952840.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 46-like [Acyrthosiphon pisum]

 Score =  252 bits (643), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 116/131 (88%), Positives = 126/131 (96%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNL 385
           +KCM+VKKLPMILALHLKRFKYM++ NRH+KVSHRVVFPLELRLF+ SDDAVNPDRMYNL
Sbjct: 240 QKCMRVKKLPMILALHLKRFKYMEQFNRHIKVSHRVVFPLELRLFNTSDDAVNPDRMYNL 299

Query: 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
           VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDD+VDKIDQS IEDF+GLTSD QKSSETGY
Sbjct: 300 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDMVDKIDQSAIEDFYGLTSDLQKSSETGY 359

Query: 446 ILFYQSRDSTD 456
           ILFYQSRD+ +
Sbjct: 360 ILFYQSRDAAE 370

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006825|ref|XP_002424245.1| ubiquitin carboxyl-terminal hydrolase, putative [Pediculus humanus corporis] gi|212507614|gb|EEB11507.1| ubiquitin carboxyl-terminal hydrolase, putative [Pediculus humanus corporis]

 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 113/130 (86%), Positives = 123/130 (94%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNL 385
           +K M+VKKLPMILALHLKRFKYM++ NRH+KVSHRVVFPLELRLF+ SDDAVNPDR+Y+L
Sbjct: 214 QKRMRVKKLPMILALHLKRFKYMEQYNRHIKVSHRVVFPLELRLFNTSDDAVNPDRLYDL 273

Query: 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
           VAVVIHCGSGPNRGHYISIVKSH FWLLFDDD+VDKID STIEDF+GLTSD QKSSETGY
Sbjct: 274 VAVVIHCGSGPNRGHYISIVKSHGFWLLFDDDMVDKIDASTIEDFYGLTSDIQKSSETGY 333

Query: 446 ILFYQSRDST 455
           ILFYQSRD T
Sbjct: 334 ILFYQSRDVT 343

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403182891|gb|EJY57700.1| AAEL017004-PA [Aedes aegypti]

 Score =  241 bits (615), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 111/130 (85%), Positives = 124/130 (95%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNL 385
           +K M+VKKLPMILALHLKRFKYM++ NRH+KVSHRVVFPLELRLF+ SDDAVNPDR+Y+L
Sbjct: 537 QKRMRVKKLPMILALHLKRFKYMEQYNRHIKVSHRVVFPLELRLFNTSDDAVNPDRLYDL 596

Query: 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
           +AVVIHCGSGPNRGHYISIVKSH FWLLFDDD+VDKI+ STIEDF+GLTSD QKSSETGY
Sbjct: 597 MAVVIHCGSGPNRGHYISIVKSHGFWLLFDDDMVDKIEASTIEDFYGLTSDIQKSSETGY 656

Query: 446 ILFYQSRDST 455
           ILFYQSRD+T
Sbjct: 657 ILFYQSRDAT 666

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236253|ref|XP_974193.2| PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum]

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/129 (86%), Positives = 122/129 (94%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNL 385
           +K M+VKKLPMILALHLKRFKYM++ NRH+KVSHRVVFPLELRLF+ SDDAVNPDR+Y+L
Sbjct: 225 QKRMRVKKLPMILALHLKRFKYMEQYNRHIKVSHRVVFPLELRLFNTSDDAVNPDRLYDL 284

Query: 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
           VAVVIHCGSGPNRGHYISIVKSH FWLLFDDD VDKID STIEDF+GLTSD QKSSETGY
Sbjct: 285 VAVVIHCGSGPNRGHYISIVKSHGFWLLFDDDQVDKIDASTIEDFYGLTSDTQKSSETGY 344

Query: 446 ILFYQSRDS 454
           ILFYQSR+S
Sbjct: 345 ILFYQSRES 353

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005509|gb|EFA01957.1| hypothetical protein TcasGA2_TC007573 [Tribolium castaneum]

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/129 (86%), Positives = 122/129 (94%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNL 385
           +K M+VKKLPMILALHLKRFKYM++ NRH+KVSHRVVFPLELRLF+ SDDAVNPDR+Y+L
Sbjct: 237 QKRMRVKKLPMILALHLKRFKYMEQYNRHIKVSHRVVFPLELRLFNTSDDAVNPDRLYDL 296

Query: 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
           VAVVIHCGSGPNRGHYISIVKSH FWLLFDDD VDKID STIEDF+GLTSD QKSSETGY
Sbjct: 297 VAVVIHCGSGPNRGHYISIVKSHGFWLLFDDDQVDKIDASTIEDFYGLTSDTQKSSETGY 356

Query: 446 ILFYQSRDS 454
           ILFYQSR+S
Sbjct: 357 ILFYQSRES 365

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170031964|ref|XP_001843853.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167871433|gb|EDS34816.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/130 (85%), Positives = 124/130 (95%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNL 385
           +K M+VKKLPMILALHLKRFKYM++ NRH+KVSHRVVFPLELRLF+ SDDAVNPDR+Y+L
Sbjct: 251 QKRMRVKKLPMILALHLKRFKYMEQYNRHIKVSHRVVFPLELRLFNTSDDAVNPDRLYDL 310

Query: 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
           +AVVIHCGSGPNRGHYISIVKSH FWLLFDDD+VDKI+ STIEDF+GLTSD QKSSETGY
Sbjct: 311 MAVVIHCGSGPNRGHYISIVKSHGFWLLFDDDMVDKIEASTIEDFYGLTSDIQKSSETGY 370

Query: 446 ILFYQSRDST 455
           ILFYQSRD+T
Sbjct: 371 ILFYQSRDAT 380

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357614773|gb|EHJ69266.1| hypothetical protein KGM_20368 [Danaus plexippus]

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 110/130 (84%), Positives = 123/130 (94%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNL 385
           +K M+VKKLP+ILALHLKRFKYM++ NRH+KVSHRVVFPLELRLF+ SDDAVNPDR+Y+L
Sbjct: 247 QKRMRVKKLPLILALHLKRFKYMEQYNRHIKVSHRVVFPLELRLFNTSDDAVNPDRLYDL 306

Query: 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
           VAVV+HCGSGPNRGHYISIVKSH FWLLFDDD+VDKID S IEDF+GLTSD QKSSETGY
Sbjct: 307 VAVVVHCGSGPNRGHYISIVKSHGFWLLFDDDMVDKIDASAIEDFYGLTSDIQKSSETGY 366

Query: 446 ILFYQSRDST 455
           ILFYQSRD+T
Sbjct: 367 ILFYQSRDAT 376

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019434|gb|EGI59918.1| Ubiquitin carboxyl-terminal hydrolase 46 [Acromyrmex echinatior]

 Score =  238 bits (607), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/130 (85%), Positives = 123/130 (94%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNL 385
           +K M+VKKLPMILALHLKRFKY+++ NRH+KVSHRVVFPLELRLF+ SDDAVNPDR+Y+L
Sbjct: 341 QKRMRVKKLPMILALHLKRFKYVEQYNRHIKVSHRVVFPLELRLFNTSDDAVNPDRLYDL 400

Query: 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
           VAVVIHCGSGPNRGHYISIVKSH FWLLFDDD+VDKID STIEDF+GLTSD QKSSETGY
Sbjct: 401 VAVVIHCGSGPNRGHYISIVKSHGFWLLFDDDMVDKIDASTIEDFYGLTSDIQKSSETGY 460

Query: 446 ILFYQSRDST 455
           ILFYQSRD +
Sbjct: 461 ILFYQSRDCS 470

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790247|gb|EFZ15246.1| hypothetical protein SINV_08745 [Solenopsis invicta]

 Score =  238 bits (606), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 111/130 (85%), Positives = 123/130 (94%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNL 385
           +K M+VKKLPMILALHLKRFKY+++ NRH+KVSHRVVFPLELRLF+ SDDAVNPDR+Y+L
Sbjct: 226 QKRMRVKKLPMILALHLKRFKYVEQYNRHIKVSHRVVFPLELRLFNTSDDAVNPDRLYDL 285

Query: 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
           VAVVIHCGSGPNRGHYISIVKSH FWLLFDDD+VDKID STIEDF+GLTSD QKSSETGY
Sbjct: 286 VAVVIHCGSGPNRGHYISIVKSHGFWLLFDDDMVDKIDASTIEDFYGLTSDIQKSSETGY 345

Query: 446 ILFYQSRDST 455
           ILFYQSRD +
Sbjct: 346 ILFYQSRDCS 355

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
FB|FBgn0039025	424	Usp12-46 "Ubiquitin-specific p	0.261	0.290	0.878	9.1e-109
UNIPROTKB|E2RG22	370	USP12 "Ubiquitin carboxyl-term	0.274	0.348	0.723	1.1e-95
UNIPROTKB|A5D9H7	369	USP12 "Ubiquitin carboxyl-term	0.274	0.349	0.723	8.8e-96
UNIPROTKB|O75317	370	USP12 "Ubiquitin carboxyl-term	0.274	0.348	0.723	8.8e-96
RGD|1308045	354	Usp12 "ubiquitin specific pept	0.274	0.364	0.730	3.3e-96
UNIPROTKB|Q52KZ6	370	usp12-a "Ubiquitin carboxyl-te	0.274	0.348	0.715	2.3e-95
UNIPROTKB|F1P2L3	375	USP12 "Ubiquitin carboxyl-term	0.274	0.344	0.730	4.2e-96
UNIPROTKB|Q5M981	370	usp12-b "Ubiquitin carboxyl-te	0.274	0.348	0.715	2.3e-95
UNIPROTKB|F1RTK0	374	USP12 "Ubiquitin carboxyl-term	0.312	0.393	0.651	1.1e-95
MGI|MGI:1270128	370	Usp12 "ubiquitin specific pept	0.274	0.348	0.723	2.3e-95

FB|FBgn0039025 Usp12-46 "Ubiquitin-specific protease 12/46 ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 581 (209.6 bits), Expect = 9.1e-109, Sum P(2) = 9.1e-109
 Identities = 108/123 (87%), Positives = 116/123 (94%)

Query:   204 GPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKK 263
             G N+S LE+EIG D FPPNE YFGLVNFGNTCYSNSVLQALYFCKPFR++VLEYKAKNK+
Sbjct:     2 GANVSQLEREIGSDLFPPNEHYFGLVNFGNTCYSNSVLQALYFCKPFREKVLEYKAKNKR 61

Query:   264 NKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINH 323
              KETLLSCLADLF++IAT KKKVGSIAPKKFITRLRKEK+EFDNYMQQDAHEFLNFLINH
Sbjct:    62 PKETLLSCLADLFYSIATQKKKVGSIAPKKFITRLRKEKEEFDNYMQQDAHEFLNFLINH 121

Query:   324 INE 326
             INE
Sbjct:   122 INE 124

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IGI;IMP

UNIPROTKB|E2RG22 USP12 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)]

 Score = 497 (180.0 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
 Identities = 94/130 (72%), Positives = 110/130 (84%)

Query:   204 GPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKK 263
             G N SALEKEIGP++FP NE YFGLVNFGNTCY NSVLQALYFC+PFR++VL YK++ +K
Sbjct:    17 GANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQPRK 76

Query:   264 NKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINH 323
              KE LL+CLADLFH+IAT KKKVG I PKKFITRLRKE + FDNYMQQDAHEFLN+L+N 
Sbjct:    77 -KENLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNT 135

Query:   324 INEKCMKVKK 333
             I +   + +K
Sbjct:   136 IADILQEERK 145

GO:0016579 "protein deubiquitination" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|A5D9H7 USP12 "Ubiquitin carboxyl-terminal hydrolase 12" [Bos taurus (taxid:9913)]

 Score = 498 (180.4 bits), Expect = 8.8e-96, Sum P(2) = 8.8e-96
 Identities = 94/130 (72%), Positives = 111/130 (85%)

Query:   204 GPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKK 263
             G N SALEKEIGP++FP NE YFGLVNFGNTCY NSVLQALYFC+PFR++VL YK++ +K
Sbjct:    17 GANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQPRK 76

Query:   264 NKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINH 323
              KE+LL+CLADLFH+IAT KKKVG I PKKFITRLRKE + FDNYMQQDAHEFLN+L+N 
Sbjct:    77 -KESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNT 135

Query:   324 INEKCMKVKK 333
             I +   + +K
Sbjct:   136 IADILQEERK 145

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISS

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0016579 "protein deubiquitination" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|O75317 USP12 "Ubiquitin carboxyl-terminal hydrolase 12" [Homo sapiens (taxid:9606)]

 Score = 498 (180.4 bits), Expect = 8.8e-96, Sum P(2) = 8.8e-96
 Identities = 94/130 (72%), Positives = 111/130 (85%)

Query:   204 GPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKK 263
             G N SALEKEIGP++FP NE YFGLVNFGNTCY NSVLQALYFC+PFR++VL YK++ +K
Sbjct:    17 GANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQPRK 76

Query:   264 NKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINH 323
              KE+LL+CLADLFH+IAT KKKVG I PKKFITRLRKE + FDNYMQQDAHEFLN+L+N 
Sbjct:    77 -KESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNT 135

Query:   324 INEKCMKVKK 333
             I +   + +K
Sbjct:   136 IADILQEERK 145

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=NAS

GO:0004221 "ubiquitin thiolesterase activity" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0016579 "protein deubiquitination" evidence=IDA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IMP

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

RGD|1308045 Usp12 "ubiquitin specific peptidase 12" [Rattus norvegicus (taxid:10116)]

 Score = 502 (181.8 bits), Expect = 3.3e-96, Sum P(2) = 3.3e-96
 Identities = 95/130 (73%), Positives = 111/130 (85%)

Query:   204 GPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKK 263
             G N SALEKEIGP++FP NE YFGLVNFGNTCY NSVLQALYFC+PFRD+VL YK++ +K
Sbjct:     1 GANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFCRPFRDKVLAYKSQPRK 60

Query:   264 NKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINH 323
              KE+LL+CLADLFH+IAT KKKVG I PKKFITRLRKE + FDNYMQQDAHEFLN+L+N 
Sbjct:    61 -KESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNT 119

Query:   324 INEKCMKVKK 333
             I +   + +K
Sbjct:   120 IADILQEERK 129

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISO

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA;ISO

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=ISO

UNIPROTKB|Q52KZ6 usp12-a "Ubiquitin carboxyl-terminal hydrolase 12-A" [Xenopus laevis (taxid:8355)]

 Score = 494 (179.0 bits), Expect = 2.3e-95, Sum P(2) = 2.3e-95
 Identities = 93/130 (71%), Positives = 110/130 (84%)

Query:   204 GPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKK 263
             G N SALEKEIGP++FP NE YFGLVNFGNTCY NSVLQALYFC+PFR++VL YK++ +K
Sbjct:    17 GANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQPRK 76

Query:   264 NKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINH 323
              KE LL+CL+DLFH+IAT KKKVG I PKKFITRLRKE + FDNYMQQDAHEFLN+L+N 
Sbjct:    77 -KENLLTCLSDLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNT 135

Query:   324 INEKCMKVKK 333
             I +   + +K
Sbjct:   136 IADILQEERK 145

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISS

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0016579 "protein deubiquitination" evidence=ISS

UNIPROTKB|F1P2L3 USP12 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)]

 Score = 501 (181.4 bits), Expect = 4.2e-96, Sum P(2) = 4.2e-96
 Identities = 95/130 (73%), Positives = 110/130 (84%)

Query:   204 GPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKK 263
             G N SALEKEIGP++FP NE YFGLVNFGNTCY NSVLQALYFC+PFRD+VL YK++ +K
Sbjct:    23 GANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFCRPFRDKVLAYKSQPRK 82

Query:   264 NKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINH 323
              KE LL+CLADLFH+IAT KKKVG I PKKFITRLRKE + FDNYMQQDAHEFLN+L+N 
Sbjct:    83 -KENLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNT 141

Query:   324 INEKCMKVKK 333
             I +   + +K
Sbjct:   142 IADILQEERK 151

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IEA

UNIPROTKB|Q5M981 usp12-b "Ubiquitin carboxyl-terminal hydrolase 12-B" [Xenopus laevis (taxid:8355)]

 Score = 494 (179.0 bits), Expect = 2.3e-95, Sum P(2) = 2.3e-95
 Identities = 93/130 (71%), Positives = 110/130 (84%)

Query:   204 GPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKK 263
             G N SALEKEIGP++FP NE YFGLVNFGNTCY NSVLQALYFC+PFR++VL YK++ +K
Sbjct:    17 GANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQPRK 76

Query:   264 NKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINH 323
              KE LL+CL+DLFH+IAT KKKVG I PKKFITRLRKE + FDNYMQQDAHEFLN+L+N 
Sbjct:    77 -KENLLTCLSDLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNT 135

Query:   324 INEKCMKVKK 333
             I +   + +K
Sbjct:   136 IADILQEERK 145

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISS

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0016579 "protein deubiquitination" evidence=ISS

UNIPROTKB|F1RTK0 USP12 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)]

 Score = 502 (181.8 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
 Identities = 99/152 (65%), Positives = 120/152 (78%)

Query:   183 ETLCSDNKFK-CDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVL 241
             E +C  ++ + C    SY    G N SALEKEIGP++FP NE YFGLVNFGNTCY NSVL
Sbjct:     2 EVVCVLSRVQLCKAAVSYF---GANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVL 58

Query:   242 QALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKE 301
             QALYFC+PFR++VL YK++ +K KE+LL+CLADLFH+IAT KKKVG I PKKFITRLRKE
Sbjct:    59 QALYFCRPFREKVLAYKSQPRK-KESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKE 117

Query:   302 KDEFDNYMQQDAHEFLNFLINHINEKCMKVKK 333
              + FDNYMQQDAHEFLN+L+N I +   + +K
Sbjct:   118 NELFDNYMQQDAHEFLNYLLNTIADILQEERK 149

GO:0016579 "protein deubiquitination" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

MGI|MGI:1270128 Usp12 "ubiquitin specific peptidase 12" [Mus musculus (taxid:10090)]

 Score = 497 (180.0 bits), Expect = 2.3e-95, Sum P(2) = 2.3e-95
 Identities = 94/130 (72%), Positives = 110/130 (84%)

Query:   204 GPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKK 263
             G N SALEKEIGP++FP NE YFGLVNFGNTCY NSVLQALYFC+PFR++VL YK++ +K
Sbjct:    17 GANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQPRK 76

Query:   264 NKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINH 323
              KE LL+CLADLFH+IAT KKKVG I PKKFITRLRKE + FDNYMQQDAHEFLN+L+N 
Sbjct:    77 -KENLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNT 135

Query:   324 INEKCMKVKK 333
             I +   + +K
Sbjct:   136 IADILQEERK 145

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISO

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISO

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	0.921
3rd Layer	3.4.19.12	0.914

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	470
cd02663	300	cd02663, Peptidase_C19G, A subfamily of Peptidase	2e-64
cd02663	300	cd02663, Peptidase_C19G, A subfamily of Peptidase	1e-58
cd02663	300	cd02663, Peptidase_C19G, A subfamily of Peptidase	2e-38
cd02257	255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	1e-36
pfam00443	313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	7e-31
pfam00443	313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	2e-27
pfam00443	313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	6e-24
cd02661	304	cd02661, Peptidase_C19E, A subfamily of Peptidase	2e-21
cd02257	255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	3e-19
cd02659	334	cd02659, peptidase_C19C, A subfamily of Peptidase	6e-19
cd02674	230	cd02674, Peptidase_C19R, A subfamily of peptidase	2e-18
cd02661	304	cd02661, Peptidase_C19E, A subfamily of Peptidase	2e-17
cd02660	328	cd02660, Peptidase_C19D, A subfamily of Peptidase	4e-16
cd02662	240	cd02662, Peptidase_C19F, A subfamily of Peptidase	1e-15
cd02657	305	cd02657, Peptidase_C19A, A subfamily of Peptidase	9e-15
cd02671	332	cd02671, Peptidase_C19O, A subfamily of Peptidase	1e-14
cd02674	230	cd02674, Peptidase_C19R, A subfamily of peptidase	5e-14
cd02660	328	cd02660, Peptidase_C19D, A subfamily of Peptidase	1e-13
cd02657	305	cd02657, Peptidase_C19A, A subfamily of Peptidase	1e-13
cd02667	279	cd02667, Peptidase_C19K, A subfamily of Peptidase	1e-13
cd02659	334	cd02659, peptidase_C19C, A subfamily of Peptidase	5e-13
cd02668	324	cd02668, Peptidase_C19L, A subfamily of Peptidase	8e-13
cd02659	334	cd02659, peptidase_C19C, A subfamily of Peptidase	3e-12
cd02661	304	cd02661, Peptidase_C19E, A subfamily of Peptidase	5e-12
cd02668	324	cd02668, Peptidase_C19L, A subfamily of Peptidase	9e-12
cd02664	327	cd02664, Peptidase_C19H, A subfamily of Peptidase	1e-11
cd02671	332	cd02671, Peptidase_C19O, A subfamily of Peptidase	4e-11
cd02667	279	cd02667, Peptidase_C19K, A subfamily of Peptidase	4e-11
cd02664	327	cd02664, Peptidase_C19H, A subfamily of Peptidase	4e-11
cd02671	332	cd02671, Peptidase_C19O, A subfamily of Peptidase	9e-11
cd02673	245	cd02673, Peptidase_C19Q, A subfamily of Peptidase	9e-11
COG5560	823	COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po	1e-10
COG5533	415	COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos	2e-10
cd02660	328	cd02660, Peptidase_C19D, A subfamily of Peptidase	5e-10
cd02658	311	cd02658, Peptidase_C19B, A subfamily of Peptidase	5e-10
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	5e-09
cd02668	324	cd02668, Peptidase_C19L, A subfamily of Peptidase	1e-08
COG5560	823	COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po	2e-08
COG5207	749	COG5207, UBP14, Isopeptidase T [Posttranslational	4e-08
COG5533	415	COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos	5e-08
pfam13423	296	pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr	7e-08
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	8e-08
cd02669	440	cd02669, Peptidase_C19M, A subfamily of Peptidase	1e-07
cd02664	327	cd02664, Peptidase_C19H, A subfamily of Peptidase	2e-07
COG5533	415	COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos	8e-07
cd02666	343	cd02666, Peptidase_C19J, A subfamily of Peptidase	8e-07
cd02658	311	cd02658, Peptidase_C19B, A subfamily of Peptidase	1e-05
pfam13423	296	pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr	3e-05
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	9e-05
COG5560	823	COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po	3e-04
cd02674	230	cd02674, Peptidase_C19R, A subfamily of peptidase	4e-04
cd02665	228	cd02665, Peptidase_C19I, A subfamily of Peptidase	4e-04
cd02662	240	cd02662, Peptidase_C19F, A subfamily of Peptidase	7e-04
cd02669	440	cd02669, Peptidase_C19M, A subfamily of Peptidase	7e-04

>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19

 Score =  209 bits (534), Expect = 2e-64
 Identities = 80/125 (64%), Positives = 101/125 (80%), Gaps = 4/125 (3%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNL 385
           EK MK+KKLP ILALHLKRFKY +++NR++K+ +RVVFPLELRLF+ +DDA NPDR+Y L
Sbjct: 180 EKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDDAENPDRLYEL 239

Query: 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
           VAVV+H G GPN GHY+SIVKSH  WLLFDD+ V+KID++ +E+FFG       +  T Y
Sbjct: 240 VAVVVHIGGGPNHGHYVSIVKSHGGWLLFDDETVEKIDENAVEEFFG----DSPNQATAY 295

Query: 446 ILFYQ 450
           +LFYQ
Sbjct: 296 VLFYQ 300

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 300

>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19

 Score =  194 bits (496), Expect = 1e-58
 Identities = 84/159 (52%), Positives = 103/159 (64%), Gaps = 20/159 (12%)

Query: 74  FDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVH 133
           FDNYM QDAHEFLNFL+N I E++ +ER          A      +N++     +PTWVH
Sbjct: 60  FDNYMHQDAHEFLNFLLNEIAEILDAER------KAEKANRKLNNNNNAEP---QPTWVH 110

Query: 134 EIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKC 193
           EIFQGILT+ET+CL CETVSS+DE F DL +D++QNTSIT CLR FS+TETLC  NKF C
Sbjct: 111 EIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQNTSITSCLRQFSATETLCGRNKFYC 170

Query: 194 DNCASYQEAQG-------PNISALEKEIGPDRFPPNERY 225
           D C S QEA+        P I AL  +    RF  +E+ 
Sbjct: 171 DECCSLQEAEKRMKIKKLPKILALHLK----RFKYDEQL 205

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 300

>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19

 Score =  140 bits (356), Expect = 2e-38
 Identities = 59/107 (55%), Positives = 69/107 (64%), Gaps = 19/107 (17%)

Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKV 286
           GL NFGNTCY NSVLQALYF                   E LL+CL DLF +I+  KK+ 
Sbjct: 1   GLENFGNTCYCNSVLQALYF-------------------ENLLTCLKDLFESISEQKKRT 41

Query: 287 GSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKK 333
           G I+PKKFITRL++E + FDNYM QDAHEFLNFL+N I E     +K
Sbjct: 42  GVISPKKFITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAERK 88

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 300

>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases

 Score =  134 bits (340), Expect = 1e-36
 Identities = 77/263 (29%), Positives = 121/263 (46%), Gaps = 47/263 (17%)

Query: 227 GLVNFGNTCYSNSVLQALY--------FCKPFRDRV---LEYKAKNKKNKETLLSCLADL 275
           GL N GNTCY NSVLQAL+        F     D++   L+  +K   +  +L S + DL
Sbjct: 1   GLNNLGNTCYLNSVLQALFSEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDL 60

Query: 276 FH-----NIATHKKKVGSIAPKKFIT---RLRKEKDE-------FDNYMQQDAHEFLNFL 320
           F       I   +    S++ +  +     L  +           + + +++  E  N  
Sbjct: 61  FGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEGDNCY 120

Query: 321 INHIN-----EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHL--- 372
                      K +K+KKLP +L +HLKRF + ++     K++ +V FPLEL L      
Sbjct: 121 KCEKKKKQEATKRLKIKKLPPVLIIHLKRFSF-NEDGTKEKLNTKVSFPLELDLSPYLSE 179

Query: 373 ---SDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDF--WLLFDDDVVDKIDQSTI 427
                D+ N    Y LVAVV+H G+  + GHY++ VK      W  F+DD V ++ +  +
Sbjct: 180 GEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEV 239

Query: 428 EDFFGLTSDHQKSSETGYILFYQ 450
            +F  L+S       + YILFY+
Sbjct: 240 LEFGSLSS-------SAYILFYE 255

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 255

>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase

 Score =  120 bits (304), Expect = 7e-31
 Identities = 50/118 (42%), Positives = 65/118 (55%), Gaps = 3/118 (2%)

Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYK---AKNKKNKETLLSCLADLFHNIAT 281
             GL N GNTCY NSVLQAL+   P RD +L+          +   L   LADLFH + +
Sbjct: 3   PTGLANLGNTCYMNSVLQALFSIPPLRDYLLQNSSELINPLGSLNQLPRALADLFHALQS 62

Query: 282 HKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILA 339
              K  S++PK F+  L K   +F  YMQQDAHEFL FL++ ++E    +KK     A
Sbjct: 63  PNSKNASVSPKNFLQALGKISPQFSGYMQQDAHEFLLFLLDQLHEDLNSLKKRKSHAA 120

Length = 313

>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase

 Score =  111 bits (279), Expect = 2e-27
 Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 18/130 (13%)

Query: 325 NEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAV---NPDR 381
             K + + +LP +L +HLKRF          K+S RV FPLEL L    ++ +    P  
Sbjct: 197 AIKKLDISRLPPVLIIHLKRF-EDFNRETEKKISDRVEFPLELDLSSYLEEELEGEEPPT 255

Query: 382 MYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQK 439
            Y LVAVV+H GS  + GHYI+ +K    + W+ FDD+ V  + +  +            
Sbjct: 256 KYELVAVVVHSGSSLSGGHYIAYIKKREKNKWVKFDDEKVSVVTEEEVL----------- 304

Query: 440 SSETGYILFY 449
              + YILFY
Sbjct: 305 -RSSAYILFY 313

Length = 313

>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase

 Score =  101 bits (253), Expect = 6e-24
 Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 27/153 (17%)

Query: 70  SSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEP 129
            S +F  YMQQDAHEFL FL++ ++E + S + + +                     E  
Sbjct: 82  ISPQFSGYMQQDAHEFLLFLLDQLHEDLNSLKKRKSHA------------------AENE 123

Query: 130 TWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRG-FSSTETLCSD 188
           + + ++FQG L S  KCL C+  SS  E F DL + I+ ++S+ + L G F   E L  +
Sbjct: 124 SLITKLFQGQLESRLKCLKCKKESSTPEPFSDLSLPIEDSSSVLKLLTGNFLKLEELEKE 183

Query: 189 NKFKCDNCASYQEAQGPNISALEKEIGPDRFPP 221
            K+ C  C   Q A         K++   R PP
Sbjct: 184 EKYYCPKCGGKQNAI--------KKLDISRLPP 208

Length = 313

>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19

 Score = 93.9 bits (234), Expect = 2e-21
 Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 15/130 (11%)

Query: 74  FDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVH 133
           F    Q+DAHEFL +L++ + +  L    +  A    S                  T V 
Sbjct: 81  FRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQET---------------TLVQ 125

Query: 134 EIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKC 193
           +IF G L S+ KCLNC+ VS+  + F DL +DIK   S+   L  F+  E L  +NK+KC
Sbjct: 126 QIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGADSLEDALEQFTKPEQLDGENKYKC 185

Query: 194 DNCASYQEAQ 203
           + C    +A 
Sbjct: 186 ERCKKKVKAS 195

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304

>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases

 Score = 86.8 bits (215), Expect = 3e-19
 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 23/131 (17%)

Query: 77  YMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIF 136
             QQDAHEFL FL++ ++E +     +++  S                     + +H++F
Sbjct: 20  SEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSS------------------LKSLIHDLF 61

Query: 137 QGILTSETKCLNC--ETVSSKDEDFFDLQVDIKQ--NTSITQCLRGFSSTETLCSDNKFK 192
            G L S   CL C  E+VS++ E F  L + +K     S+  CL  F   E L  DN +K
Sbjct: 62  GGKLESTIVCLECGHESVSTEPELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEGDNCYK 121

Query: 193 CDNCASYQEAQ 203
           C+     QEA 
Sbjct: 122 CEKK-KKQEAT 131

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 255

>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19

 Score = 87.3 bits (217), Expect = 6e-19
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 26/152 (17%)

Query: 326 EKCMKVKKLPMILALHLKRFKY-MDKMNRHVKVSHRVVFPLEL-----------RLFHLS 373
           EK +  KKLP +L L LKRF++  + M R +K++ R  FPLEL           +    S
Sbjct: 184 EKGVCFKKLPPVLTLQLKRFEFDFETMMR-IKINDRFEFPLELDMEPYTEKGLAKKEGDS 242

Query: 374 DDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTI-EDF 430
           +   +   +Y L  V++H G     GHY S +K      W  F+DDVV   D +   E+ 
Sbjct: 243 EKKDSESYIYELHGVLVHSGDAHG-GHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEEC 301

Query: 431 FG---------LTSDHQKSSETGYILFYQSRD 453
           FG               K +   Y+LFY+ + 
Sbjct: 302 FGGEETQKTYDSGPRAFKRTTNAYMLFYERKS 333

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 334

>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19

 Score = 83.9 bits (208), Expect = 2e-18
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 21/129 (16%)

Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLE---LRLFHLSDDAVNPDRMY 383
           K + + +LP +L +HLKRF +     R  K++  V FPL    L  +  +     P + Y
Sbjct: 118 KKLTISRLPKVLIIHLKRFSFSRGSTR--KLTTPVTFPLNDLDLTPYVDTRSFTGPFK-Y 174

Query: 384 NLVAVVIHCGSGPNRGHYISIVKSHDF--WLLFDDDVVDKIDQSTIEDFFGLTSDHQKSS 441
           +L AVV H GS  N GHY +  K+++   W  FDD  V K+ +S++             S
Sbjct: 175 DLYAVVNHYGSL-NGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVV------------S 221

Query: 442 ETGYILFYQ 450
            + YILFY+
Sbjct: 222 SSAYILFYE 230

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 230

>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 23/128 (17%)

Query: 326 EKCMKVKKLPMILALHLKRFK--YMDKMNRHVKVSHRVVFPLELRLF-HLSDDAVNPDRM 382
            K + + + P +L +HLKRF      K+N+ +       FP  L L  ++S     P + 
Sbjct: 195 SKQLTIHRAPNVLTIHLKRFSNFRGGKINKQIS------FPETLDLSPYMSQPNDGPLK- 247

Query: 383 YNLVAVVIHCGSGPNRGHYISIVK-SHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSS 441
           Y L AV++H G  P+ GHY   VK S+  W   DD    K+   +IE            S
Sbjct: 248 YKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDD---SKVSPVSIETVL---------S 295

Query: 442 ETGYILFY 449
           +  YILFY
Sbjct: 296 QKAYILFY 303

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304

>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19

 Score = 79.0 bits (195), Expect = 4e-16
 Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 26/134 (19%)

Query: 327 KCMKVKKLPMILALHLKRFKY-MDKMNRHVKVSHRVVFPLELRL---------FHLSDDA 376
           K + +KKLP +L   LKRF++ ++K +R  K+   V FPLEL +              ++
Sbjct: 209 KQLSIKKLPPVLCFQLKRFEHSLNKTSR--KIDTYVQFPLELNMTPYTSSSIGDTQDSNS 266

Query: 377 VNPDRMYNLVAVVIHCGSGPNRGHYISIVKSH-DFWLLFDDDVVDKIDQSTIEDFFGLTS 435
           ++PD  Y+L AVV+H G+  + GHY +  +     W  FDD ++ ++ +  +        
Sbjct: 267 LDPDYTYDLFAVVVHKGT-LDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLK------ 319

Query: 436 DHQKSSETGYILFY 449
                    Y+LFY
Sbjct: 320 ------SQAYLLFY 327

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 328

>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19

 Score = 75.9 bits (187), Expect = 1e-15
 Identities = 53/208 (25%), Positives = 76/208 (36%), Gaps = 41/208 (19%)

Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKV 286
           GLVN GNTC+ NSVLQAL       + + E+  +   +   L   L +    +       
Sbjct: 1   GLVNLGNTCFMNSVLQALASLPSLIEYLEEFLEQQ--DAHELFQVLLETLEQLLKFPFD- 57

Query: 287 GSIAPKKFITRLRKEKDEFDNYMQQDAHEF------------LNFLINHINE-------K 327
           G +A    I  L+  +     Y                    L   ++           K
Sbjct: 58  GLLA--SRIVCLQCGESSKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDDYK 115

Query: 328 CM----KVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMY 383
           C      + +LP IL +HL R  + D      K S +V FP  L           P  +Y
Sbjct: 116 CDRCQTVIVRLPQILCIHLSRSVF-DGRGTSTKNSCKVSFPERL-----------PKVLY 163

Query: 384 NLVAVVIHCGSGPNRGHYISIVKSHDFW 411
            L AVV+H GS  + GHY+   +   F 
Sbjct: 164 RLRAVVVHYGS-HSSGHYVCYRRKPLFS 190

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 240

>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19

 Score = 74.3 bits (183), Expect = 9e-15
 Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 12/110 (10%)

Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKET---LLSCLADLFHNIATHK 283
           GL N GNTCY NS LQ L      RD +  Y    +   ++   L + L DLF  +    
Sbjct: 1   GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTM---D 57

Query: 284 KKVGSIAPKKFITRLRK------EKDEFDNYMQQDAHEFLNFLINHINEK 327
           KK   + P +F+  LR       EK     Y QQDA E  + L++ +++K
Sbjct: 58  KKQEPVPPIEFLQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQK 107

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 305

>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19

 Score = 74.2 bits (182), Expect = 1e-14
 Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 13/128 (10%)

Query: 326 EKCMKVKKLPMILALHLKRF----KYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDR 381
           E+ +   KLP ++ +HLK F       D      KV+  ++ PL+L L   S    N   
Sbjct: 213 ERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTKPKNDV- 271

Query: 382 MYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSS 441
            Y L AVV+H G+  + GHY + V+    WLLFDD    ++  +  +DF    S +  S+
Sbjct: 272 -YRLFAVVMHSGATISSGHYTAYVR----WLLFDD---SEVKVTEEKDFLEALSPNTSST 323

Query: 442 ETGYILFY 449
            T Y+LFY
Sbjct: 324 STPYLLFY 331

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 332

>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19

 Score = 71.2 bits (175), Expect = 5e-14
 Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 41/132 (31%)

Query: 78  MQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQ 137
            QQDA EFL FL++ ++ +I            L                         FQ
Sbjct: 21  DQQDAQEFLLFLLDGLHSII----------VDL-------------------------FQ 45

Query: 138 GILTSETKCLNCETVSSKDEDFFDLQVDIKQNT------SITQCLRGFSSTETLCSDNKF 191
           G L S   CL C   S+  E F  L + I   +      ++  CLR F+  ETL  DN +
Sbjct: 46  GQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAW 105

Query: 192 KCDNCASYQEAQ 203
           KC  C   ++A 
Sbjct: 106 KCPKCKKKRKAT 117

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 230

>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 34/141 (24%)

Query: 77  YMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIF 136
           Y QQDAHEF  FL++ ++                     GG  N ++        +H+ F
Sbjct: 86  YSQQDAHEFFQFLLDQLHT------------------HYGGDKNEANDESHCNCIIHQTF 127

Query: 137 QGILTSETKCLNCETVSSKDEDFFDLQVDIKQNT---------------SITQCLRGFSS 181
            G L S   C  C  VS+  + F DL +DI   +               +++ CL  F+ 
Sbjct: 128 SGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTR 187

Query: 182 TETLCSDNKFKCDNCASYQEA 202
            E L     +KC  C S QEA
Sbjct: 188 PEKLGDFA-YKCSGCGSTQEA 207

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 328

>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 11/122 (9%)

Query: 330 KVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVV 389
           ++ +LP  L +   RF +   + +  K+  +V FP EL L+    +   P   Y LVAV+
Sbjct: 192 RISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLY----ELCTPSGYYELVAVI 247

Query: 390 IHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYIL 447
            H G   + GHY++ V+      W+ FDDD V ++ +  I    G    H       YIL
Sbjct: 248 THQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWH-----IAYIL 302

Query: 448 FY 449
            Y
Sbjct: 303 LY 304

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 305

>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 70/286 (24%), Positives = 104/286 (36%), Gaps = 69/286 (24%)

Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLE---------------YKAKNKKNKETLLSC 271
           GL N GNTC+ N+V+Q L      R+ + E               +K   +++   LL  
Sbjct: 1   GLSNLGNTCFFNAVMQNLSQTPALRELLSETPKELFSQVCRKAPQFKGYQQQDSHELLRY 60

Query: 272 LAD-------------LFHNIATHKKKVGSIAPKKF----ITRLRKEKDEF--DNYMQQD 312
           L D             L   I        S+  + F    + R  + K E   ++ ++Q 
Sbjct: 61  LLDGLRTFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQF 120

Query: 313 AHEFLNFLINHI-NEKCMKVKK------LPMILALHLKRFK-----YMDKMNRHVKVSHR 360
               +    N    E C K KK      LP +L +HLKRF+      + K++RHV     
Sbjct: 121 TEVEILEGNNKFACENCTKAKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVS---- 176

Query: 361 VVFPLELRLFHLSDDAVNPDR-----MYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFD 415
             FP  L L    D   N        +Y L  VV H G+    GHY++ VK         
Sbjct: 177 --FPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTM-RSGHYVAYVKVRPPQQRLS 233

Query: 416 DDVVDKIDQSTIED-----FFGLTSDHQKSSET------GYILFYQ 450
           D    K             ++   SD ++ S         Y+LFY+
Sbjct: 234 DLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 279

>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19

 Score = 69.6 bits (171), Expect = 5e-13
 Identities = 32/131 (24%), Positives = 48/131 (36%), Gaps = 26/131 (19%)

Query: 72  DEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTW 131
           D  + + Q D  EF   L                   KL              G  +   
Sbjct: 79  DSLNTFEQHDVQEFFRVLF-----------------DKL---------EEKLKGTGQEGL 112

Query: 132 VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKF 191
           +  +F G L +   C  C   S ++E F DLQV +K   ++ + L  +   ETL  DNK+
Sbjct: 113 IKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVKGKKNLEESLDAYVQGETLEGDNKY 172

Query: 192 KCDNCASYQEA 202
            C+ C    +A
Sbjct: 173 FCEKCGKKVDA 183

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 334

>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19

 Score = 69.0 bits (169), Expect = 8e-13
 Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 31/149 (20%)

Query: 73  EFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWV 132
             D   QQDA EF    ++ + E  LS+    + K                        V
Sbjct: 82  GLDTGQQQDAQEFSKLFLSLL-EAKLSKSKNPDLK----------------------NIV 118

Query: 133 HEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFK 192
            ++F+G  +  T+C  C   SS    F++L++ +K + ++ +C+  F   E L  DN++ 
Sbjct: 119 QDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKGHKTLEECIDEFLKEEQLTGDNQYF 178

Query: 193 CDNCASYQEAQGPNISALEKEIGPDRFPP 221
           C++C S  +A         + I     PP
Sbjct: 179 CESCNSKTDAT--------RRIRLTTLPP 199

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 324

>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 224 RYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSC-LADLFHNIATH 282
            Y GL N G TCY NS+LQ LY    FR+ V         +    +   L  LF  +   
Sbjct: 1   GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLS 60

Query: 283 KKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMK 330
           +  V     +          D  + + Q D  EF   L + + E+ +K
Sbjct: 61  ESPV--KTTELTDKTRSFGWDSLNTFEQHDVQEFFRVLFDKL-EEKLK 105

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 334

>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19

 Score = 66.1 bits (162), Expect = 5e-12
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKA-KNKKNKETLLSCLADLFHNIATHKKK 285
           GL N GNTC+ NSVLQ L    P  + +L  +  K+  N+   + C  +     A     
Sbjct: 3   GLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERA-LASS 61

Query: 286 VGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLIN 322
               AP+ F + L++    F    Q+DAHEFL +L++
Sbjct: 62  GPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLD 98

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304

>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19

 Score = 65.5 bits (160), Expect = 9e-12
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 15/136 (11%)

Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLV 386
           + +++  LP  L   L RF +  K     K++  + FP  L +     ++     +Y L 
Sbjct: 190 RRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLAESDEGSYVYELS 249

Query: 387 AVVIHCGSGPNRGHYISIVK--SHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQK----- 439
            V+IH G     GHYI+ +K      W  F+D+ V+++    ++   G + D  K     
Sbjct: 250 GVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKL--GNSEDPAKPRKSE 307

Query: 440 ------SSETGYILFY 449
                 SS T Y+L Y
Sbjct: 308 IKKGTHSSRTAYMLVY 323

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 324

>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 43/166 (25%), Positives = 56/166 (33%), Gaps = 46/166 (27%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRL-----FHLSDDAVNPD 380
           EK MKV   P  L L L RF Y  K +   K+   V     L L        S+  +   
Sbjct: 167 EKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVESKSSESPLEKK 226

Query: 381 RM--------------YNLVAVVIHCGSGPNRGHYISIVKS------------------- 407
                           Y L AVV+H G     GHY +  +                    
Sbjct: 227 EEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEE 286

Query: 408 ---HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ 450
                 W LF+D  V     S+ E    +TS  +   +T YILFY+
Sbjct: 287 NDESKNWYLFNDSRV---TFSSFESVQNVTS--RFPKDTPYILFYE 327

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 327

>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19

 Score = 63.8 bits (155), Expect = 4e-11
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 8/102 (7%)

Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRV--LEYKAKNKKNKETLLSCLADLFHNIATHKK 284
           GL N GNTCY NSVLQ LYFC  F+  +  L     + +  ++      + +++      
Sbjct: 26  GLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQLQSSFLLNPEKYNDEL---- 81

Query: 285 KVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326
              + AP++ +  LR+    ++ Y+Q DA E L  ++ +I E
Sbjct: 82  --ANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQE 121

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 332

>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 43/134 (32%), Positives = 55/134 (41%), Gaps = 41/134 (30%)

Query: 73  EFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWV 132
           +F  Y QQD+HE L +L++ +   I S                                 
Sbjct: 45  QFKGYQQQDSHELLRYLLDGLRTFIDS--------------------------------- 71

Query: 133 HEIFQGILTSETKCLNCETVSSKDEDFFDLQ----VDIKQNTSITQCLRGFSSTETLCSD 188
             IF G LTS   C +C TVS   E F DL      +IK   SI  CL+ F+  E L  +
Sbjct: 72  --IFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGN 129

Query: 189 NKFKCDNC--ASYQ 200
           NKF C+NC  A  Q
Sbjct: 130 NKFACENCTKAKKQ 143

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 279

>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19

 Score = 64.1 bits (156), Expect = 4e-11
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKV 286
           GL+N GNTCY NSVLQAL+  K FR +VL        + ++++  L  L  ++   +++ 
Sbjct: 1   GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDSQSVMKKLQLLQAHLMHTQRRA 60

Query: 287 GSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHI 324
            +  P  F+   R     F    QQD  E+L +L++ +
Sbjct: 61  EA-PPDYFLEASRPPW--FTPGSQQDCSEYLRYLLDRL 95

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 327

>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19

 Score = 62.6 bits (152), Expect = 9e-11
 Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 54/148 (36%)

Query: 74  FDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVH 133
           ++ Y+Q DA E L  ++ +I E+                                   V 
Sbjct: 100 YEGYLQHDAQEVLQCILGNIQEL-----------------------------------VE 124

Query: 134 EIFQGILTSETKCLNCETVSSKDEDFFDLQVDIK-------------------QNTSITQ 174
           + FQG L   T+CL CET + + EDF D+ V ++                   +  ++  
Sbjct: 125 KDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKW 184

Query: 175 CLRGFSSTETLCSDNKFKCDNCASYQEA 202
            +  F+S E +  ++K+ C+NC  Y EA
Sbjct: 185 AISQFASVERIVGEDKYFCENCHHYTEA 212

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 332

>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19

 Score = 61.8 bits (150), Expect = 9e-11
 Identities = 53/266 (19%), Positives = 91/266 (34%), Gaps = 67/266 (25%)

Query: 228 LVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKE----TLLSCLADLFHNIATHK 283
           LVN GN+CY NS +QAL           E+   ++++      TLL  + D+     T+ 
Sbjct: 2   LVNTGNSCYFNSTMQALSSIGKINT---EFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNV 58

Query: 284 KKVG--------------SIAPKKFITRLRKEKDEFD------------NYMQQDAHEFL 317
                             +I           E++  D                 +     
Sbjct: 59  PPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNKLDIDELLISN 118

Query: 318 NFLINHINEKCMKVK-----------KLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLE 366
               + I + C   K             P  L+++LKR+K     + ++K +  ++    
Sbjct: 119 FKTWSPIEKDCSSCKCESAISSERIMTFPECLSINLKRYKLRIATSDYLKKNEEIMKKYC 178

Query: 367 LRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS---HDFWLLFDDDVVDKID 423
                        D  Y+LVAV+ H G  P  GHYI+  K       WL   DD +  + 
Sbjct: 179 GT-----------DAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVS 227

Query: 424 QSTIEDFFGLTSDHQKSSETGYILFY 449
           ++ +            +  +GY++FY
Sbjct: 228 KNDVS---------TNARSSGYLIFY 244

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 245

>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 9/116 (7%)

Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLL-------SCLADLFHNI 279
           GL N GNTCY NS LQ L      RD  L  + +   N+E  L       S  ADL   +
Sbjct: 267 GLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQL 326

Query: 280 ATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLP 335
             +   + +  P  F   +    +EF  Y QQD+ EF+ FL++ ++E   ++ K P
Sbjct: 327 --YDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKP 380

Length = 823

>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 48/184 (26%), Positives = 65/184 (35%), Gaps = 20/184 (10%)

Query: 217 DRFPPNERYFGLVNFGNTCYSNSVLQALYFCK----PFRDRVLEYKAKNKKNKETLLSCL 272
           D  PPN    GL N GNTCY N  LQ L          + R           +    S  
Sbjct: 67  DNLPPN----GLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNA 122

Query: 273 ADLF----HNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKC 328
              F         H  K  SI+P+ FI  L      F   MQQD+ EFL F ++ ++E  
Sbjct: 123 FKQFIALYETPGCHGPK--SISPRNFIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDL 180

Query: 329 MKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAV 388
              K    IL L    F+ + +       SH      E  L   S+ ++     +     
Sbjct: 181 NGNKSRSPILELK-DEFEEVREELPLSHFSH-----HEWNLHLRSNKSLVAKTFFGQDKS 234

Query: 389 VIHC 392
            + C
Sbjct: 235 RLQC 238

Length = 415

>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLA----DLFHNIATH 282
           GL+N G TC+ N +LQAL      R+  L  +        +  SCL+    ++F      
Sbjct: 2   GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYS 61

Query: 283 KKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLP 335
             +     P   +    K       Y QQDAHEF  FL++ ++      K   
Sbjct: 62  GDRSPYG-PINLLYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA 113

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 328

>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 16/120 (13%)

Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAK---NKKNKETLLSC-LADLFHNIATH 282
           GL N GN+CY NSVLQ L+    F+ R  + + K   +  +    L+C L  L   + + 
Sbjct: 1   GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSG 60

Query: 283 KKKVGS------------IAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMK 330
           +    +            I P  F   + K   EF    QQDA EFL  LI+ ++ +  K
Sbjct: 61  RYSKPASLKSENDPYQVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFK 120

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 311

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 10/108 (9%)

Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKK 284
           Y GL N G TCY NS+LQ+L+F   FR  V      + + ++++   L  LF+N+ T ++
Sbjct: 193 YVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPRGRDSVALALQRLFYNLQTGEE 252

Query: 285 KVGSIAPKKFITRLRKEK--DEFDNYMQQDAHEFLNFLINHINEKCMK 330
            V +       T L +    D  D++MQ D  EF   L +++ EK M+
Sbjct: 253 PVDT-------TELTRSFGWDSDDSFMQHDIQEFNRVLQDNL-EKSMR 292

Length = 1089

>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 18/112 (16%)

Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEY-----------KAKNKKNKETLLSCLADL 275
           GL N G TCY NS LQ  +    FR  V E                    +T++  L  +
Sbjct: 1   GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLI 60

Query: 276 FHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEK 327
           F  +    + V  + P  F+  L       D   QQDA EF    ++ +  K
Sbjct: 61  FAQLQFGNRSV--VDPSGFVKALG-----LDTGQQQDAQEFSKLFLSLLEAK 105

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 324

>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 18/129 (13%)

Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPL-ELRLFHLSDDAVNPDRMYNL 385
           K M++ +LPMIL +HLKRF  +       K+   V +P+ +L L  +     +P  +Y+L
Sbjct: 709 KQMELWRLPMILIIHLKRFSSVRSFRD--KIDDLVEYPIDDLDLSGVEYMVDDPRLIYDL 766

Query: 386 VAVVIHCGSGPNRGHYISIVK--SHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSET 443
            AV  H G G + GHY +  +  +++ W LFDD  + ++D                 + +
Sbjct: 767 YAVDNHYG-GLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDS------------VTSS 813

Query: 444 GYILFYQSR 452
            Y+LFY+ +
Sbjct: 814 AYVLFYRRK 822

Length = 823

>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

 Score = 55.5 bits (133), Expect = 4e-08
 Identities = 53/221 (23%), Positives = 87/221 (39%), Gaps = 19/221 (8%)

Query: 115 GGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQ 174
           G  G+ H+ S +EE      +    L+ E   + C       E       +     S+T 
Sbjct: 202 GAEGNGHALSHYEETQHPLAVKLPSLSKEDCDIYC--YLCDSEIRSRYNSNEN---SVTI 256

Query: 175 CLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPN--ERYFGLVNFG 232
                 +     ++ K    +    Q  Q  N   LEK+  P+    +    Y GL+N G
Sbjct: 257 DFGI--NIADGKTEEK----SLRKLQSEQNANWEFLEKKRAPESKGESVPSPYVGLINLG 310

Query: 233 NTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKK------V 286
           N+CY +SV+Q+L      ++     +       +  L CL      + +  K+      V
Sbjct: 311 NSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYV 370

Query: 287 GSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEK 327
             I+P  F   + ++  EF  + QQDAHEFL FL+  I + 
Sbjct: 371 NGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKG 411

Length = 749

>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 54.6 bits (131), Expect = 5e-08
 Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 27/133 (20%)

Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPD------ 380
           K M++  LP +L +H+ RF         V    ++  P   +     +  V         
Sbjct: 298 KRMEILVLPDVLIIHISRFHIS------VMGRKKIDTPQGWKNTASVEVNVTLLFNNGIG 351

Query: 381 ---RMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDH 437
              R Y+L+ VV H G+  N GHY S VK    W ++DD  V K  ++T           
Sbjct: 352 YIPRKYSLLGVVCHNGT-LNGGHYFSEVKRSGTWNVYDDSQVRKGSRTT----------- 399

Query: 438 QKSSETGYILFYQ 450
             S  + YILFY 
Sbjct: 400 SGSHPSSYILFYT 412

Length = 415

>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase

 Score = 53.6 bits (129), Expect = 7e-08
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 14/102 (13%)

Query: 330 KVKKLPMILALHLKRFKYMDKMNRHVKVSH-RVVFPLELRLFH-LSDDA------VNPDR 381
            VK LP IL + LKR+      N +    +  V  PLE+RL H + DD       ++ + 
Sbjct: 197 HVKSLPPILGICLKRYNVTP--NGNWSRLNTFVDIPLEIRLPHFIQDDEMVNEGPLSGNF 254

Query: 382 MYNLVAVVIHCGSGPNRGHYISIV----KSHDFWLLFDDDVV 419
            Y L  VV H G   + GH +S +       D W LF+D +V
Sbjct: 255 KYELQGVVCHIGDSTHSGHLVSFIRVAPSEDDQWYLFNDFLV 296

Length = 296

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 54.5 bits (131), Expect = 8e-08
 Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 20/134 (14%)

Query: 306 DNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPL 365
           + +  QDA + + F            + LP +L L LKRF+Y  + +  VK++ R  FPL
Sbjct: 362 EKHGLQDAKKGVIF------------ESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPL 409

Query: 366 ELRLF-HLSDDAV---NPDRMYNLVAVVIHCGSGPNRGHYISIVKSH--DFWLLFDDDVV 419
           E+ L   L  DA    N D +Y L  V++H G     GHY +++K      W  FDD  V
Sbjct: 410 EIDLLPFLDRDADKSENSDAVYVLYGVLVHSGDLHE-GHYYALLKPEKDGRWYKFDDTRV 468

Query: 420 DKI-DQSTIEDFFG 432
            +  ++  +E+ FG
Sbjct: 469 TRATEKEVLEENFG 482

Length = 1089

>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 11/127 (8%)

Query: 207 ISALEKEIGPDRFPPNERYF----GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYK--AK 260
           IS L+++    R    + Y     GL N  N  Y+N ++QAL   KP R+  L Y+    
Sbjct: 97  ISDLDRDPKLSRDLDGKPYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYEN 156

Query: 261 NKKNKETLLSCLADLFHNIATHKKKVGSIAPKKF---ITRLRKEKDEFDNYMQQDAHEFL 317
            K  K  L+  L++L   I   +   G ++P +    ++++ K+K  F    Q D  EFL
Sbjct: 157 IKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKK--FSITEQSDPVEFL 214

Query: 318 NFLINHI 324
           ++L+N +
Sbjct: 215 SWLLNTL 221

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 440

>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 38/125 (30%)

Query: 79  QQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQG 138
           QQD  E+L +L++ ++                                   T + ++F G
Sbjct: 81  QQDCSEYLRYLLDRLH-----------------------------------TLIEKMFGG 105

Query: 139 ILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCAS 198
            L++  +CLNC + S++ E F DL +      S+   L  F S E L  DN++ C+ CAS
Sbjct: 106 KLSTTIRCLNCNSTSARTERFRDLDLSF---PSVQDLLNYFLSPEKLTGDNQYYCEKCAS 162

Query: 199 YQEAQ 203
            Q+A+
Sbjct: 163 LQDAE 167

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 327

>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 50.8 bits (121), Expect = 8e-07
 Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 15/152 (9%)

Query: 66  LDLCSS--DEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSS 123
           +D+ S     F   MQQD+ EFL F ++ ++E +   + +S    +L        +    
Sbjct: 147 IDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPIL-ELKDEFEEVREELPL 205

Query: 124 SGFEEPTW----------VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQ--NTS 171
           S F    W          V + F G   S  +C  C   S+    F  L V   +     
Sbjct: 206 SHFSHHEWNLHLRSNKSLVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLG 265

Query: 172 ITQCLRGFSSTETLCSDNKFKCDNCASYQEAQ 203
           + +C+  F   E L   + ++C  C   + ++
Sbjct: 266 LQECIDRFYEEEKLEGKDAWRCPKCGRKESSR 297

Length = 415

>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEY---KAKNKKNKET 267
           GL N GNTCY NS+LQ  +  KP RD VL +   KA+   +  T
Sbjct: 3   GLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPT 46

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 343

>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 28/128 (21%)

Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLV 386
           K    K  P  L +++KRF+ + +     K+   +  P EL           P + Y L+
Sbjct: 208 KTTGFKTFPDYLVINMKRFQ-LLENWVPKKLDVPIDVPEELG----------PGK-YELI 255

Query: 387 AVVIHCGSGPNRGHYISIVK----SHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSE 442
           A + H G+  + GHY++ +K        W+LF+D   +K+  S                +
Sbjct: 256 AFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFND---EKVVASQDPPEM---------KK 303

Query: 443 TGYILFYQ 450
            GYI FYQ
Sbjct: 304 LGYIYFYQ 311

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 311

>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSC-LADLFHNIATHKKK 285
           GL N G  CY N++LQ ++F  P  + +L + A     KE  L C L  LF  +     +
Sbjct: 2   GLENNGPNCYLNALLQLMFFIPPLFNAILRHSADC--PKENCLLCELGFLFDMLDKSTGQ 59

Query: 286 VGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHIN 325
                    +       +     +QQD  E   F++  ++
Sbjct: 60  NCQAT--NLLRTFSGIPEAAALGLQQDIQEANRFILEQLS 97

Length = 296

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 44.9 bits (106), Expect = 9e-05
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 27/132 (20%)

Query: 72  DEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTW 131
           D  D++MQ D  EF        N V+     +S   + +                     
Sbjct: 266 DSDDSFMQHDIQEF--------NRVLQDNLEKSMRGTVVENA------------------ 299

Query: 132 VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKF 191
           ++ IF G + S  KC+N    S++ EDF+D+Q+++K   ++ +  R +   ETL  DN++
Sbjct: 300 LNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKGMKNLQESFRRYIQVETLDGDNRY 359

Query: 192 KCDNCASYQEAQ 203
             +     Q+A+
Sbjct: 360 NAEK-HGLQDAK 370

Length = 1089

>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 18/102 (17%)

Query: 73  EFDNYMQQDAHEFLNFLINHINEVI--LSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPT 130
           EF  Y QQD+ EF+ FL++ ++E +  + ++P +      S PD   GD+       +  
Sbjct: 349 EFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYT------SKPDLSPGDDVVVKKKAKEC 402

Query: 131 W----------VHEIFQGILTSETKCLNCETVSSKDEDFFDL 162
           W          + ++FQG+  S   C  C +VS   + F DL
Sbjct: 403 WWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDL 444

Length = 823

>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 13/18 (72%), Positives = 14/18 (77%)

Query: 227 GLVNFGNTCYSNSVLQAL 244
           GL N GNTCY NS+LQ L
Sbjct: 1   GLRNLGNTCYMNSILQCL 18

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 230

>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 22/120 (18%)

Query: 333 KLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHC 392
           +LP +L   L RF++     R  K+  ++ FP  ++        V     Y L AV++H 
Sbjct: 127 ELPPVLTFELSRFEF--NQGRPEKIHDKLEFPQIIQ-------QVP----YELHAVLVHE 173

Query: 393 GSGPNRGHYISIV--KSHDFWLLFDDDVVDKIDQSTIE-DFFGLTSDHQKSSETGYILFY 449
           G   N GHY + +  +S   W  ++D  V +     +E D FG   +      + Y L Y
Sbjct: 174 GQA-NAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRN-----PSAYCLMY 227

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 228

>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 33/141 (23%), Positives = 42/141 (29%), Gaps = 49/141 (34%)

Query: 68  LCSSDEFDNYM-----QQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHS 122
           L S      Y+     QQDAHE    L+  +                             
Sbjct: 18  LASLPSLIEYLEEFLEQQDAHELFQVLLETL---------------------------EQ 50

Query: 123 SSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDL------QVDIKQNTSITQCL 176
              F  P      F G+L S   CL C   S    + F +             T++  CL
Sbjct: 51  LLKF--P------FDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSGSGTTLEHCL 102

Query: 177 RGFSSTETLCSDNKFKCDNCA 197
             F STE    D  +KCD C 
Sbjct: 103 DDFLSTEI-IDD--YKCDRCQ 120

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 240

>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 10/100 (10%)

Query: 330 KVKKLPMILALHLKRFKYMDKMNRHVKVSHRVV-FPLELRLF----HLSDDAVNPDRMYN 384
            + +LP  L  H+KRF    K N   + +  +V FP++        H    ++N    YN
Sbjct: 328 LISRLPKYLIFHIKRF---SKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYN 384

Query: 385 LVAVVIHCGSGPNRGHYISIV--KSHDFWLLFDDDVVDKI 422
           LVA ++H G+    G +   +  KS + W    D  V ++
Sbjct: 385 LVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEV 424

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 440

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	470
cd02663	300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	100.0
KOG1865|consensus	545		100.0
cd02671	332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	100.0
cd02668	324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	100.0
cd02664	327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	100.0
cd02667	279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	100.0
cd02660	328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	100.0
cd02659	334	peptidase_C19C A subfamily of Peptidase C19. Pepti	100.0
cd02657	305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	100.0
cd02661	304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	100.0
COG5560	823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	100.0
COG5533	415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	100.0
cd02658	311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	100.0
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	100.0
cd02662	240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	100.0
KOG1868|consensus	653		100.0
cd02674	230	Peptidase_C19R A subfamily of peptidase C19. Pepti	100.0
cd02673	245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	100.0
KOG1866|consensus	944		100.0
cd02665	228	Peptidase_C19I A subfamily of Peptidase C19. Pepti	100.0
KOG0944|consensus	763		100.0
KOG4598|consensus	1203		100.0
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	100.0
KOG1867|consensus	492		100.0
KOG1873|consensus	877		100.0
cd02257	255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	100.0
PF00443	269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	100.0
KOG1870|consensus	842		100.0
cd02666	343	Peptidase_C19J A subfamily of Peptidase C19. Pepti	100.0
KOG1864|consensus	587		100.0
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	100.0
cd02672	268	Peptidase_C19P A subfamily of Peptidase C19. Pepti	100.0
KOG1863|consensus	1093		100.0
cd02670	241	Peptidase_C19N A subfamily of Peptidase C19. Pepti	99.97
PF13423	295	UCH_1: Ubiquitin carboxyl-terminal hydrolase	99.97
KOG1871|consensus	420		99.96
KOG1872|consensus	473		99.94
KOG2026|consensus	442		99.87
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	99.75
cd02658	311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	99.65
KOG1275|consensus	1118		99.63
cd02657	305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	99.62
cd02666	343	Peptidase_C19J A subfamily of Peptidase C19. Pepti	99.61
cd02660	328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	99.6
cd02671	332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	99.6
PF00443	269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	99.59
cd02663	300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	99.59
cd02668	324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	99.58
cd02661	304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	99.56
cd02664	327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	99.53
cd02659	334	peptidase_C19C A subfamily of Peptidase C19. Pepti	99.53
KOG0944|consensus	763		99.53
COG5560	823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	99.49
KOG1865|consensus	545		99.48
cd02667	279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	99.47
COG5533	415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	99.44
KOG1873|consensus	877		99.29
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	99.24
cd02662	240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	99.23
KOG1864|consensus	587		99.21
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.12
KOG1863|consensus	1093		99.11
KOG1868|consensus	653		99.01
KOG2026|consensus	442		98.87
KOG1866|consensus	944		98.86
KOG1871|consensus	420		98.68
PF13423	295	UCH_1: Ubiquitin carboxyl-terminal hydrolase	98.66
KOG1867|consensus	492		98.56
cd02674	230	Peptidase_C19R A subfamily of peptidase C19. Pepti	98.54
KOG1872|consensus	473		98.53
cd02673	245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	98.42
KOG1870|consensus	842		98.4
cd02665	228	Peptidase_C19I A subfamily of Peptidase C19. Pepti	98.28
cd02257	255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	98.25
KOG3556|consensus	724		98.02
cd02672	268	Peptidase_C19P A subfamily of Peptidase C19. Pepti	97.62
PF15499	275	Peptidase_C98: Ubiquitin-specific peptidase-like,	97.52
PF05408	193	Peptidase_C28: Foot-and-mouth virus L-proteinase;	97.43
KOG1887|consensus	806		96.89
cd02670	241	Peptidase_C19N A subfamily of Peptidase C19. Pepti	96.79
KOG4598|consensus	1203		94.99
KOG1275|consensus	1118		91.93
PF08715	320	Viral_protease: Papain like viral protease; InterP	91.41

>cd02663 Peptidase_C19G A subfamily of Peptidase C19

Probab=100.00  E-value=2.3e-60  Score=463.44  Aligned_cols=289  Identities=58%  Similarity=0.961  Sum_probs=247.3

Q ss_pred             cccc-CCchhhhh--hhhccchHH-------HHHhhhcCCc-cchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHH
Q psy2130          24 GLVN-GKTCKEKE--DRIEKSQPF-------WEQTSLQDKI-SLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINH   92 (470)
Q Consensus        24 GL~N-GNtCy~Ns--Q~L~~~~~f-------~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~   92 (470)
                      ||.| ||||||||  |||++ ..+       |..+..+... ....+..|+++|+ ...+.|.+++||||||||.+|||.
T Consensus         1 Gl~NlGnTCY~NsvLQ~L~~-~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~-~~~~~f~~~~QqDA~EFl~~lLd~   78 (300)
T cd02663           1 GLENFGNTCYCNSVLQALYF-ENLLTCLKDLFESISEQKKRTGVISPKKFITRLK-RENELFDNYMHQDAHEFLNFLLNE   78 (300)
T ss_pred             CccCCCcceehhHHHHHhhh-HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHH-hhcCCCCCCccccHHHHHHHHHHH
Confidence            8999 99999999  99999 444       5555544431 2344559999998 788999999999999999999999


Q ss_pred             HHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCcccccCCCcccccccCCCCCH
Q psy2130          93 INEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSI  172 (470)
Q Consensus        93 L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~~~sl  172 (470)
                      ||+++...........         ............++|.++|+|++.++++|..|++++.+.|+|++|+|+||+..+|
T Consensus        79 l~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~Lsl~i~~~~sl  149 (300)
T cd02663          79 IAEILDAERKAEKANR---------KLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQNTSI  149 (300)
T ss_pred             HHHHHHHHhhcccccc---------cccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEeccCCCCcCCH
Confidence            9999986543322110         0011122334567899999999999999999999999999999999999999999


Q ss_pred             HHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHH
Q psy2130         173 TQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRD  252 (470)
Q Consensus       173 ~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~  252 (470)
                      ++||+.|+++|.++++++|.|++|+.+..+.                                                 
T Consensus       150 ~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~-------------------------------------------------  180 (300)
T cd02663         150 TSCLRQFSATETLCGRNKFYCDECCSLQEAE-------------------------------------------------  180 (300)
T ss_pred             HHHHHHhhcccccCCCCcEECCCCCCceeEE-------------------------------------------------
Confidence            9999999999999999999999999988887                                                 


Q ss_pred             HHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhc
Q psy2130         253 RVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVK  332 (470)
Q Consensus       253 ~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~  332 (470)
                                                                                                ++..|.
T Consensus       181 --------------------------------------------------------------------------k~~~i~  186 (300)
T cd02663         181 --------------------------------------------------------------------------KRMKIK  186 (300)
T ss_pred             --------------------------------------------------------------------------EEEEec
Confidence                                                                                      888999


Q ss_pred             CCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEecCCcEE
Q psy2130         333 KLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWL  412 (470)
Q Consensus       333 ~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~~~W~  412 (470)
                      ++|++|+|||+||.++...++..|+...|.||++|++..+.+........|+|+|||+|.|.+.++|||+||+|.+++|+
T Consensus       187 ~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~~~~W~  266 (300)
T cd02663         187 KLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGGWL  266 (300)
T ss_pred             cCCceeEEEEEeEEeecccCCceecCceEecCcEEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEECCCcEE
Confidence            99999999999999987665668999999999999998876555566789999999999998789999999999999999


Q ss_pred             EEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130         413 LFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ  450 (470)
Q Consensus       413 ~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~  450 (470)
                      +|||+.|+++++++|.+.+|...    ...+||||||+
T Consensus       267 ~fdD~~V~~~~~~~v~~~~~~~~----~~~~aYiLfY~  300 (300)
T cd02663         267 LFDDETVEKIDENAVEEFFGDSP----NQATAYVLFYQ  300 (300)
T ss_pred             EEcCCceEEcCHHHHHHhcCCCC----CCCceEEEEeC
Confidence            99999999999999998887542    47899999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1865|consensus

Probab=100.00  E-value=1.5e-59  Score=460.01  Aligned_cols=277  Identities=32%  Similarity=0.550  Sum_probs=244.9

Q ss_pred             CCCccccccc-CCchhhhh--hhhccchHH-----------------------HHHh---hhcCCccchhhHHHHHHhhc
Q psy2130          18 PNERYFGLVN-GKTCKEKE--DRIEKSQPF-----------------------WEQT---SLQDKISLGWECSLILELDL   68 (470)
Q Consensus        18 ~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f-----------------------~~~~---~~~~~~~~~~~~~~~~~l~~   68 (470)
                      +...++||.| |||||+||  |||.++||+                       |...   ........-.+..++..|. 
T Consensus       104 ~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~s~L~-  182 (545)
T KOG1865|consen  104 PAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHNPGHPISPSQILSNLR-  182 (545)
T ss_pred             cccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcCCCCccChHHHHHhhh-
Confidence            3556799999 99999999  999999999                       2221   1112212333448888888 


Q ss_pred             ccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccc
Q psy2130          69 CSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLN  148 (470)
Q Consensus        69 ~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~  148 (470)
                      .+...|..+.|+||||||++++|.|+.......++                  .....++.++|.++|+|.++++++|+.
T Consensus       183 ~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~------------------~~~~sq~ttlv~~iFGG~LrS~vkC~~  244 (545)
T KOG1865|consen  183 NISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQ------------------VDPRSQDTTLVHQIFGGYLRSQIKCLH  244 (545)
T ss_pred             hhcccccCCchhhHHHHHHHHHHHHHHhhcCCCcc------------------CCcccccceehhhhhccchhhceeccc
Confidence            88999999999999999999999999987622222                  122356788999999999999999999


Q ss_pred             cCCcccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCc
Q psy2130         149 CETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGL  228 (470)
Q Consensus       149 C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL  228 (470)
                      |+++|.++|+.+||+|+|....+|+++|+.|+++|.|+|+|.|+|++|++++.+.                         
T Consensus       245 C~~vS~tyE~~~dltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~-------------------------  299 (545)
T KOG1865|consen  245 CKGVSDTYEPYLDLTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPAS-------------------------  299 (545)
T ss_pred             CCCcccccccccceEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCccc-------------------------
Confidence            9999999999999999999999999999999999999999999999999999999                         


Q ss_pred             ccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCcc
Q psy2130         229 VNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNY  308 (470)
Q Consensus       229 ~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~  308 (470)
                                                                                                      
T Consensus       300 --------------------------------------------------------------------------------  299 (545)
T KOG1865|consen  300 --------------------------------------------------------------------------------  299 (545)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCCCCCCcceEEEEE
Q psy2130         309 MQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAV  388 (470)
Q Consensus       309 ~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~av  388 (470)
                                        |+++|.+.|+||+|+|+||..    ++..||.+.|.||+.|||.+|+......+..|.|+||
T Consensus       300 ------------------K~lti~raPnVLTi~LKRF~~----~~~gKI~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYav  357 (545)
T KOG1865|consen  300 ------------------KQLTIHRAPNVLTLHLKRFSN----GTGGKISKPVSFPETLDLQPYMSQPNEGSTVYKLYAV  357 (545)
T ss_pred             ------------------ceeeeecCCceEEEeeehhcc----CcccccccccCCcccccccccccCCCCCCceEEEEEE
Confidence                              999999999999999999997    3448999999999999999999977778899999999


Q ss_pred             EEeecCCCCCcEEEEEEec-CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEec
Q psy2130         389 VIHCGSGPNRGHYISIVKS-HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSR  452 (470)
Q Consensus       389 V~H~G~~~~~GHY~a~vr~-~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~  452 (470)
                      |+|.|.+.++|||++|||. +|.||.+||+.|..++.+.|            .++.||||||.|.
T Consensus       358 lVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~V------------Lsq~AYmLfY~R~  410 (545)
T KOG1865|consen  358 LVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESV------------LSQQAYILFYARK  410 (545)
T ss_pred             EEeccccccCCceEEEEEcCCCceEEccCceeeeccccce------------ecccceEEEEEee
Confidence            9999999999999999996 68999999999999999888            5899999999997

>cd02671 Peptidase_C19O A subfamily of Peptidase C19

Probab=100.00  E-value=1.4e-56  Score=439.19  Aligned_cols=271  Identities=30%  Similarity=0.546  Sum_probs=229.7

Q ss_pred             CCCCCCCCCccccccc-CCchhhhh--hhhccchHHHHHhhh----------------------cCCccchhhHHHHHHh
Q psy2130          12 GPDRFPPNERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSL----------------------QDKISLGWECSLILEL   66 (470)
Q Consensus        12 ~~~~~~~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~----------------------~~~~~~~~~~~~~~~l   66 (470)
                      |.++.+-..+++||.| ||||||||  |||+++|+|...+..                      ........+..|++++
T Consensus        14 ~~~~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~~l   93 (332)
T cd02671          14 SCEKRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQLQSSFLLNPEKYNDELANQAPRRLLNAL   93 (332)
T ss_pred             cccccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccCcHHHHHHHHHHHHHHHhhcccccCHHHHHHHH
Confidence            4456666788999999 99999999  999999999222100                      0010112244788888


Q ss_pred             hcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceec
Q psy2130          67 DLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKC  146 (470)
Q Consensus        67 ~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C  146 (470)
                      + ...+.|.++.||||||||.+|||.|++                                   +|.++|+|++.++++|
T Consensus        94 ~-~~~~~f~~~~QQDA~EFl~~LLd~L~~-----------------------------------~i~~~F~g~~~~~~~C  137 (332)
T cd02671          94 R-EVNPMYEGYLQHDAQEVLQCILGNIQE-----------------------------------LVEKDFQGQLVLRTRC  137 (332)
T ss_pred             H-HhccccCCccccCHHHHHHHHHHHHHH-----------------------------------HHHhhhceEEEEEEEe
Confidence            8 778999999999999999999999984                                   3568999999999999


Q ss_pred             cccCCcccccCCCcccccccCCC-------------------CCHHHHhccCCccccccCCCccccCCccccccccCCCc
Q psy2130         147 LNCETVSSKDEDFFDLQVDIKQN-------------------TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNI  207 (470)
Q Consensus       147 ~~C~~~s~~~~~f~~Lsl~i~~~-------------------~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~  207 (470)
                      ..|++++.+.|+|++|+|||+..                   .+|++||+.|+++|.++|+++|.|+.|+.+..+.    
T Consensus       138 ~~C~~~s~~~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~----  213 (332)
T cd02671         138 LECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAE----  213 (332)
T ss_pred             CCCCCeeceecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEE----
Confidence            99999999999999999999964                   5899999999999999999999999999998888    


Q ss_pred             cccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCC
Q psy2130         208 SALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVG  287 (470)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~  287 (470)
                                                                                                      
T Consensus       214 --------------------------------------------------------------------------------  213 (332)
T cd02671         214 --------------------------------------------------------------------------------  213 (332)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccc----cccccccceEec
Q psy2130         288 SIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKM----NRHVKVSHRVVF  363 (470)
Q Consensus       288 ~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~----~~~~K~~~~v~f  363 (470)
                                                             +...|.++|++|+|||+||.+++..    +...|+...|.|
T Consensus       214 ---------------------------------------k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~f  254 (332)
T cd02671         214 ---------------------------------------RSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLT  254 (332)
T ss_pred             ---------------------------------------EEEEEecCCCEEEEEeeeeccccccccccCCceecCccccC
Confidence                                                   8899999999999999999976431    345899999999


Q ss_pred             CcccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCc
Q psy2130         364 PLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSET  443 (470)
Q Consensus       364 p~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~  443 (470)
                      |..|++.++...  .....|+|+|||+|.|.+.++|||+||+|    |++|||+.|++++++++.+...++   .....+
T Consensus       255 p~~L~~~~~~~~--~~~~~Y~L~~VI~H~G~~~~~GHY~a~vr----W~~fdD~~V~~~~~~~~~~~~~~~---~~~~~~  325 (332)
T cd02671         255 PLKLSLEEWSTK--PKNDVYRLFAVVMHSGATISSGHYTAYVR----WLLFDDSEVKVTEEKDFLEALSPN---TSSTST  325 (332)
T ss_pred             ccccccccccCC--CCCCeEEEEEEEEEcCCCCCCCeEEEEEE----EEEEcCcceEEccHHHHHhhcCCC---CCCCCc
Confidence            999999876543  34689999999999998789999999999    999999999999999887643322   135789


Q ss_pred             EEEEEEE
Q psy2130         444 GYILFYQ  450 (470)
Q Consensus       444 aYiLfY~  450 (470)
                      ||||||+
T Consensus       326 aYiLfY~  332 (332)
T cd02671         326 PYLLFYK  332 (332)
T ss_pred             eEEEEEC
Confidence            9999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02668 Peptidase_C19L A subfamily of Peptidase C19

Probab=100.00  E-value=1.8e-55  Score=433.68  Aligned_cols=281  Identities=24%  Similarity=0.431  Sum_probs=231.1

Q ss_pred             cccc-CCchhhhh--hhhccchHHHHHhhhcCCc---------------cchhhH---HHHHHhhccc----CC------
Q psy2130          24 GLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKI---------------SLGWEC---SLILELDLCS----SD------   72 (470)
Q Consensus        24 GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~---------------~~~~~~---~~~~~l~~~~----~~------   72 (470)
                      ||.| ||||||||  |+|+++|+|...+......               ......   .++..|+...    .|      
T Consensus         1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~   80 (324)
T cd02668           1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA   80 (324)
T ss_pred             CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence            8999 99999999  9999999994443221100               001111   2222222000    00      


Q ss_pred             -CCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCC
Q psy2130          73 -EFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCET  151 (470)
Q Consensus        73 -~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~  151 (470)
                       .|..++||||+||+.+|||.||+++.....                       ....++|.++|+|++..+++|..|++
T Consensus        81 l~~~~~~QqDa~EFl~~lLd~L~~~l~~~~~-----------------------~~~~~~i~~~F~G~~~~~~~C~~C~~  137 (324)
T cd02668          81 LGLDTGQQQDAQEFSKLFLSLLEAKLSKSKN-----------------------PDLKNIVQDLFRGEYSYVTQCSKCGR  137 (324)
T ss_pred             hCCCCccccCHHHHHHHHHHHHHHHHhhccC-----------------------CcccchhhhhcceEEEEEEEeCCCCC
Confidence             267789999999999999999999863210                       12346789999999999999999999


Q ss_pred             cccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccC
Q psy2130         152 VSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNF  231 (470)
Q Consensus       152 ~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~  231 (470)
                      .+.+.++|++|+|+||...+|++||+.|+.+|.+++++.|.|++|+.+..+.                            
T Consensus       138 ~s~~~e~f~~l~l~i~~~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~----------------------------  189 (324)
T cd02668         138 ESSLPSKFYELELQLKGHKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDAT----------------------------  189 (324)
T ss_pred             ccccccccEEEEEEecccCCHHHHHHHhhCceecCCCccccCCCCCceeeeE----------------------------
Confidence            9999999999999999999999999999999999999999999999988887                            


Q ss_pred             CCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccc
Q psy2130         232 GNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQ  311 (470)
Q Consensus       232 gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~Qq  311 (470)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (324)
T cd02668         190 --------------------------------------------------------------------------------  189 (324)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCCCCCCcceEEEEEEEe
Q psy2130         312 DAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIH  391 (470)
Q Consensus       312 Da~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H  391 (470)
                                     ++..|.++|++|+|||+||.++...+...|+...|.||..|||.++..........|+|+|||+|
T Consensus       190 ---------------k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~~vI~H  254 (324)
T cd02668         190 ---------------RRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLAESDEGSYVYELSGVLIH  254 (324)
T ss_pred             ---------------EEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechhhcccccCCCcEEEEEEEEEE
Confidence                           88899999999999999999987666678999999999999999998766667789999999999


Q ss_pred             ecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhhhhcCCCC---------CCCCCCCcEEEEEEE
Q psy2130         392 CGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTS---------DHQKSSETGYILFYQ  450 (470)
Q Consensus       392 ~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~g~~~---------~~~~~~~~aYiLfY~  450 (470)
                      .|.+..+|||+||+|.  +++||+|||+.|++++++.|.+..+..+         .....+..||||||+
T Consensus       255 ~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~  324 (324)
T cd02668         255 QGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK  324 (324)
T ss_pred             cCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence            9987899999999996  4799999999999999999987555221         123468899999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02664 Peptidase_C19H A subfamily of Peptidase C19

Probab=100.00  E-value=2.9e-55  Score=431.97  Aligned_cols=257  Identities=31%  Similarity=0.522  Sum_probs=219.2

Q ss_pred             cccc-CCchhhhh--hhhccchHHHHHh-------------------------hhcCCccchhhHH-HHHHhhcccCCCC
Q psy2130          24 GLVN-GKTCKEKE--DRIEKSQPFWEQT-------------------------SLQDKISLGWECS-LILELDLCSSDEF   74 (470)
Q Consensus        24 GL~N-GNtCy~Ns--Q~L~~~~~f~~~~-------------------------~~~~~~~~~~~~~-~~~~l~~~~~~~f   74 (470)
                      ||.| ||||||||  |+|+++|+|...+                         ..... ....+.. ++++++   .+.|
T Consensus         1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~~L~~lf~~l~~~~~-~~~~~~~~~l~~~~---~~~f   76 (327)
T cd02664           1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDSQSVMKKLQLLQAHLMHTQR-RAEAPPDYFLEASR---PPWF   76 (327)
T ss_pred             CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccccCCcchHHHHHHHHHHHHhhcCC-cccCCHHHHHHHhc---cccc
Confidence            8999 99999999  9999999992222                         11111 1222223 665544   4679


Q ss_pred             CCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCccc
Q psy2130          75 DNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSS  154 (470)
Q Consensus        75 ~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~  154 (470)
                      ..+.|||||||+.+|||.|+.                                   +|.++|+|++.++++|..|++++.
T Consensus        77 ~~~~QqDa~EFl~~lLd~l~~-----------------------------------~i~~~F~G~~~~~i~C~~C~~~s~  121 (327)
T cd02664          77 TPGSQQDCSEYLRYLLDRLHT-----------------------------------LIEKMFGGKLSTTIRCLNCNSTSA  121 (327)
T ss_pred             CCCCcCCHHHHHHHHHHHHHH-----------------------------------HHHhhCcEEeEeEEEcCCCCCEec
Confidence            999999999999999999992                                   477999999999999999999999


Q ss_pred             ccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCc
Q psy2130         155 KDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNT  234 (470)
Q Consensus       155 ~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gnt  234 (470)
                      +.++|.+|+|+||   +|++||+.|+.+|.++++++|+|++|+.+..+.                               
T Consensus       122 ~~e~f~~l~L~i~---sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~-------------------------------  167 (327)
T cd02664         122 RTERFRDLDLSFP---SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAE-------------------------------  167 (327)
T ss_pred             ccccceeeecCCC---CHHHHHHHhcCeeEccCCCceeCCccCCcccee-------------------------------
Confidence            9999999999999   899999999999999999999999999988887                               


Q ss_pred             chhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHH
Q psy2130         235 CYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAH  314 (470)
Q Consensus       235 Cy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~  314 (470)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (327)
T cd02664         168 --------------------------------------------------------------------------------  167 (327)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCC-------------------
Q psy2130         315 EFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDD-------------------  375 (470)
Q Consensus       315 E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~-------------------  375 (470)
                                  +...|.++|++|+|||+||.++...+...|+...|.||+.||+..+...                   
T Consensus       168 ------------k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~  235 (327)
T cd02664         168 ------------KEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGE  235 (327)
T ss_pred             ------------EEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCcccccccccccccccccccccccc
Confidence                        8899999999999999999998876667899999999999999877521                   


Q ss_pred             CCCCCcceEEEEEEEeecCCCCCcEEEEEEecC----------------------CcEEEEeCcceeeechhhhhhhcCC
Q psy2130         376 AVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSH----------------------DFWLLFDDDVVDKIDQSTIEDFFGL  433 (470)
Q Consensus       376 ~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~----------------------~~W~~~nD~~V~~v~~~~v~~~~g~  433 (470)
                      .......|+|+|||+|.|.++++|||+||+|..                      +.|++|||+.|+++++++|..+.++
T Consensus       236 ~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~  315 (327)
T cd02664         236 LVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSR  315 (327)
T ss_pred             ccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCC
Confidence            113457899999999999878999999999963                      6899999999999999999775543


Q ss_pred             CCCCCCCCCcEEEEEEE
Q psy2130         434 TSDHQKSSETGYILFYQ  450 (470)
Q Consensus       434 ~~~~~~~~~~aYiLfY~  450 (470)
                      .     ...+||||||+
T Consensus       316 ~-----~~~~aYlLfY~  327 (327)
T cd02664         316 F-----PKDTPYILFYE  327 (327)
T ss_pred             C-----CCCCEEEEEeC
Confidence            2     46899999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02667 Peptidase_C19K A subfamily of Peptidase C19

Probab=100.00  E-value=8.4e-55  Score=419.68  Aligned_cols=244  Identities=34%  Similarity=0.589  Sum_probs=218.4

Q ss_pred             cccc-CCchhhhh--hhhccchHHHHHhhhcCCccchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhc
Q psy2130          24 GLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSE  100 (470)
Q Consensus        24 GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~  100 (470)
                      ||.| ||||||||  |+|+++|+|...+..       .+..|+..++ ...+.|.+++|||||||+.+|||.|+.     
T Consensus         1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------~P~~~~~~l~-~~~~~f~~~~QqDA~Efl~~lld~l~~-----   67 (279)
T cd02667           1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------TPKELFSQVC-RKAPQFKGYQQQDSHELLRYLLDGLRT-----   67 (279)
T ss_pred             CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-------CHHHHHHHHH-HhhHhhcCCchhhHHHHHHHHHHHHHH-----
Confidence            8999 99999999  999999998554443       4568889998 888999999999999999999999982     


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCcccccCCCcccccccCC----CCCHHHHh
Q psy2130         101 RPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQ----NTSITQCL  176 (470)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~----~~sl~~~L  176 (470)
                                                    +|.++|+|++.++++|..|++++.+.|+|.+|+||++.    ..+|++||
T Consensus        68 ------------------------------~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~~~~sL~~~L  117 (279)
T cd02667          68 ------------------------------FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESCL  117 (279)
T ss_pred             ------------------------------hhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccCCCCCHHHHH
Confidence                                          36789999999999999999999999999999999874    57999999


Q ss_pred             ccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhc
Q psy2130         177 RGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLE  256 (470)
Q Consensus       177 ~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~  256 (470)
                      +.|+.+|.+++++.|.|+.|++   +.                                                     
T Consensus       118 ~~~~~~E~l~~~~~~~C~~C~~---a~-----------------------------------------------------  141 (279)
T cd02667         118 KQFTEVEILEGNNKFACENCTK---AK-----------------------------------------------------  141 (279)
T ss_pred             HhhcCeeEecCCCcccCCccCc---ee-----------------------------------------------------
Confidence            9999999999999999999987   55                                                     


Q ss_pred             cccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCc
Q psy2130         257 YKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPM  336 (470)
Q Consensus       257 ~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~  336 (470)
                                                                                            ++..+.++|+
T Consensus       142 ----------------------------------------------------------------------k~~~i~~~P~  151 (279)
T cd02667         142 ----------------------------------------------------------------------KQYLISKLPP  151 (279)
T ss_pred             ----------------------------------------------------------------------eEeEhhhCCC
Confidence                                                                                  7788999999


Q ss_pred             eEEEEeeeeeeeccccccccccceEecCcccccccCCCC-----CCCCCcceEEEEEEEeecCCCCCcEEEEEEec----
Q psy2130         337 ILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDD-----AVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS----  407 (470)
Q Consensus       337 ~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~-----~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~----  407 (470)
                      +|+|||+||.++... ...|+...|.||..||+.+++..     .......|+|+|||+|.|.. ++|||+||+|.    
T Consensus       152 ~Lii~LkRF~~~~~~-~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~-~~GHY~a~v~~~~~~  229 (279)
T cd02667         152 VLVIHLKRFQQPRSA-NLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTM-RSGHYVAYVKVRPPQ  229 (279)
T ss_pred             eEEEEEeccccCccc-CceecCceEeCCCccchhhccCccccccccCCCceEEEEEEEEEeCCC-CCCEeEEEEEcCccc
Confidence            999999999998653 45899999999999999988765     23456899999999999995 99999999996    


Q ss_pred             -------------------CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130         408 -------------------HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ  450 (470)
Q Consensus       408 -------------------~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~  450 (470)
                                         ++.||+|||+.|++|+.++|            ...+||||||+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v------------~~~~aYiLfYe  279 (279)
T cd02667         230 QRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEV------------LKSEAYLLFYE  279 (279)
T ss_pred             cccccccccccccccCCCCCCcEEEEECCccEECCHHHh------------ccCCcEEEEeC
Confidence                               57999999999999999888            36789999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02660 Peptidase_C19D A subfamily of Peptidase C19

Probab=100.00  E-value=1.8e-53  Score=421.13  Aligned_cols=271  Identities=31%  Similarity=0.552  Sum_probs=227.7

Q ss_pred             ccccc-CCchhhhh--hhhccchHHHHHhhhc-----------------------------CCccchhhHHHHHHhhccc
Q psy2130          23 FGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQ-----------------------------DKISLGWECSLILELDLCS   70 (470)
Q Consensus        23 ~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~-----------------------------~~~~~~~~~~~~~~l~~~~   70 (470)
                      .||.| ||||||||  |||+++|+|...+...                             .......+..++.+++ ..
T Consensus         1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~-~~   79 (328)
T cd02660           1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSW-KH   79 (328)
T ss_pred             CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHH-hh
Confidence            49999 99999999  9999999993322111                             0101222337777777 77


Q ss_pred             CCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccC
Q psy2130          71 SDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCE  150 (470)
Q Consensus        71 ~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~  150 (470)
                      .+.|.++.|||||||+.+|||.||+|+........                  ......++|.++|+|++.++++|..|+
T Consensus        80 ~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~------------------~~~~~~~~i~~~F~g~~~~~~~C~~C~  141 (328)
T cd02660          80 SRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEAN------------------DESHCNCIIHQTFSGSLQSSVTCQRCG  141 (328)
T ss_pred             chhhcccccccHHHHHHHHHHHHHHHhhccccccc------------------ccccCCceeEEecccEEEeeeEcCCCC
Confidence            78899999999999999999999999865432210                  012335788999999999999999999


Q ss_pred             CcccccCCCcccccccCCC---------------CCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccC
Q psy2130         151 TVSSKDEDFFDLQVDIKQN---------------TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIG  215 (470)
Q Consensus       151 ~~s~~~~~f~~Lsl~i~~~---------------~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~  215 (470)
                      +++.+.++|++|+|++|..               .+|++||+.|+.+|.+++.+ |+|++|+.+..+.            
T Consensus       142 ~~s~~~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~------------  208 (328)
T cd02660         142 GVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEAT------------  208 (328)
T ss_pred             CccceecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceE------------
Confidence            9999999999999999975               89999999999999997766 9999999988777            


Q ss_pred             CCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHH
Q psy2130         216 PDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFI  295 (470)
Q Consensus       216 ~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~  295 (470)
                                                                                                      
T Consensus       209 --------------------------------------------------------------------------------  208 (328)
T cd02660         209 --------------------------------------------------------------------------------  208 (328)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCC
Q psy2130         296 TRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDD  375 (470)
Q Consensus       296 ~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~  375 (470)
                                                     ++..|.++|++|+|+|+||.++.. +...|+...|.||.+|||.+++..
T Consensus       209 -------------------------------~~~~i~~lP~~Lii~lkRf~~~~~-~~~~K~~~~v~fp~~Ldl~~~~~~  256 (328)
T cd02660         209 -------------------------------KQLSIKKLPPVLCFQLKRFEHSLN-KTSRKIDTYVQFPLELNMTPYTSS  256 (328)
T ss_pred             -------------------------------EEEEecCCCceeEEEEEeEEecCC-CCCcCCCcEEeCCCEechhhhccc
Confidence                                           888999999999999999999764 345799999999999999987653


Q ss_pred             ---------CCCCCcceEEEEEEEeecCCCCCcEEEEEEecC-CcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEE
Q psy2130         376 ---------AVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSH-DFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY  445 (470)
Q Consensus       376 ---------~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~-~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aY  445 (470)
                               .......|+|+|||+|.|. ..+|||++|+|.. ++|++|||+.|+++++++|            ....||
T Consensus       257 ~~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~~~~~~~~~~W~~~nD~~V~~~~~~~v------------~~~~ay  323 (328)
T cd02660         257 SIGDTQDSNSLDPDYTYDLFAVVVHKGT-LDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEV------------LKSQAY  323 (328)
T ss_pred             ccccccccccCCCCceEEEEEEEEeecc-CCCCcEEEEEECCCCcEEEEECCeeEECCHHHh------------cCCCcE
Confidence                     3345688999999999997 7899999999987 8999999999999999888            367999


Q ss_pred             EEEEE
Q psy2130         446 ILFYQ  450 (470)
Q Consensus       446 iLfY~  450 (470)
                      ||||.
T Consensus       324 il~Y~  328 (328)
T cd02660         324 LLFYH  328 (328)
T ss_pred             EEEeC
Confidence            99994

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02659 peptidase_C19C A subfamily of Peptidase C19

Probab=100.00  E-value=5.5e-53  Score=418.67  Aligned_cols=283  Identities=30%  Similarity=0.555  Sum_probs=231.7

Q ss_pred             ccccccc-CCchhhhh--hhhccchHHHHHhhhc----CCc-cchhhH---HHHHHhhc----------------ccCCC
Q psy2130          21 RYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQ----DKI-SLGWEC---SLILELDL----------------CSSDE   73 (470)
Q Consensus        21 ~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~----~~~-~~~~~~---~~~~~l~~----------------~~~~~   73 (470)
                      |++||.| ||||||||  |+|+++|+|...+...    ... ......   .++..+..                .....
T Consensus         1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (334)
T cd02659           1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSFGWDS   80 (334)
T ss_pred             CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhCCccccCcchhheeccCCCCC
Confidence            5899999 99999999  9999999994443221    000 001111   11121110                11245


Q ss_pred             CCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCcc
Q psy2130          74 FDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVS  153 (470)
Q Consensus        74 f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s  153 (470)
                      |..+.||||+||+.+||+.|++++...                          ...++|.++|+|++..+++|..|++.+
T Consensus        81 ~~~~~QqDa~Efl~~ll~~l~~~~~~~--------------------------~~~~~i~~lF~g~~~~~~~C~~C~~~s  134 (334)
T cd02659          81 LNTFEQHDVQEFFRVLFDKLEEKLKGT--------------------------GQEGLIKNLFGGKLVNYIICKECPHES  134 (334)
T ss_pred             CCcccchhHHHHHHHHHHHHHHHhccC--------------------------cccchhhhhCceEEEeEEEecCCCcee
Confidence            778899999999999999999987421                          124578999999999999999999999


Q ss_pred             cccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCC
Q psy2130         154 SKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGN  233 (470)
Q Consensus       154 ~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gn  233 (470)
                      .+.++|.+|+|++|...++++||..|+.+|.+++++.|.|++|+++..+.                              
T Consensus       135 ~~~e~f~~l~l~i~~~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~------------------------------  184 (334)
T cd02659         135 EREEYFLDLQVAVKGKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAE------------------------------  184 (334)
T ss_pred             cccccceEEEEEcCCCCCHHHHHHHhcCeeEecCCccEecCcCCCcccEE------------------------------
Confidence            99999999999999999999999999999999998999999999987777                              


Q ss_pred             cchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccH
Q psy2130         234 TCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDA  313 (470)
Q Consensus       234 tCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa  313 (470)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (334)
T cd02659         185 --------------------------------------------------------------------------------  184 (334)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC-----------CCCCcc
Q psy2130         314 HEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA-----------VNPDRM  382 (470)
Q Consensus       314 ~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~-----------~~~~~~  382 (470)
                                   +...|.++|++|+|+|+||.++...+...|+...|.||+.||+.++....           ......
T Consensus       185 -------------k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~  251 (334)
T cd02659         185 -------------KGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYI  251 (334)
T ss_pred             -------------EEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCccccccccccccccccccCCCCee
Confidence                         78889999999999999999986666668999999999999998877543           234678


Q ss_pred             eEEEEEEEeecCCCCCcEEEEEEecC--CcEEEEeCcceeeechhhhh-hhcCCCCCC---------CCCCCcEEEEEEE
Q psy2130         383 YNLVAVVIHCGSGPNRGHYISIVKSH--DFWLLFDDDVVDKIDQSTIE-DFFGLTSDH---------QKSSETGYILFYQ  450 (470)
Q Consensus       383 Y~L~avV~H~G~~~~~GHY~a~vr~~--~~W~~~nD~~V~~v~~~~v~-~~~g~~~~~---------~~~~~~aYiLfY~  450 (470)
                      |+|+|||+|.|. ..+|||++|+|..  +.|++|||+.|+++++++|. +.+|+.+..         ...+..||||||+
T Consensus       252 Y~L~~vI~H~G~-~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~  330 (334)
T cd02659         252 YELHGVLVHSGD-AHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYE  330 (334)
T ss_pred             EEEEEEEEecCC-CCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEE
Confidence            999999999997 8999999999974  89999999999999999994 677775332         1346789999999


Q ss_pred             ecC
Q psy2130         451 SRD  453 (470)
Q Consensus       451 r~~  453 (470)
                      |++
T Consensus       331 ~~~  333 (334)
T cd02659         331 RKS  333 (334)
T ss_pred             EeC
Confidence            976

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02657 Peptidase_C19A A subfamily of Peptidase C19

Probab=100.00  E-value=1.6e-52  Score=410.01  Aligned_cols=264  Identities=24%  Similarity=0.404  Sum_probs=221.5

Q ss_pred             cccc-CCchhhhh--hhhccchHHHHHhhhc--------------------------CCccchhhHHHHHHhhcccCCCC
Q psy2130          24 GLVN-GKTCKEKE--DRIEKSQPFWEQTSLQ--------------------------DKISLGWECSLILELDLCSSDEF   74 (470)
Q Consensus        24 GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~--------------------------~~~~~~~~~~~~~~l~~~~~~~f   74 (470)
                      ||.| ||||||||  |+|+++|+|...+...                          .......+..|+..++ ...+.|
T Consensus         1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~i~p~~~~~~l~-~~~~~f   79 (305)
T cd02657           1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEPVPPIEFLQLLR-MAFPQF   79 (305)
T ss_pred             CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCCcCCcHHHHHHHH-HHCcCc
Confidence            8999 99999999  9999999993222111                          0101223336777777 666777


Q ss_pred             ------CCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccc
Q psy2130          75 ------DNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLN  148 (470)
Q Consensus        75 ------~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~  148 (470)
                            .+++|||||||+..|||.|++++...                         ....++|.++|+|++.++++|..
T Consensus        80 ~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~-------------------------~~~~~~i~~~F~g~~~~~~~C~~  134 (305)
T cd02657          80 AEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA-------------------------GSKGSFIDQLFGIELETKMKCTE  134 (305)
T ss_pred             ccccCCCCccccCHHHHHHHHHHHHHHHhccc-------------------------CCCCcHHHHhhceEEEEEEEcCC
Confidence                  45599999999999999999987530                         23466899999999999999999


Q ss_pred             cC-CcccccCCCcccccccCCC---CCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCC
Q psy2130         149 CE-TVSSKDEDFFDLQVDIKQN---TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNER  224 (470)
Q Consensus       149 C~-~~s~~~~~f~~Lsl~i~~~---~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (470)
                      |+ .++.+.++|.+|+|+||..   .+|++||..++.++..     ..|+.|+......                     
T Consensus       135 C~~~~~~~~e~f~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~---------------------  188 (305)
T cd02657         135 SPDEEEVSTESEYKLQCHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYT---------------------  188 (305)
T ss_pred             CCCCCccccccceEEEeecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEE---------------------
Confidence            99 7999999999999999975   6899999998876653     4688888876665                     


Q ss_pred             ccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCc
Q psy2130         225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDE  304 (470)
Q Consensus       225 ~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~  304 (470)
                                                                                                      
T Consensus       189 --------------------------------------------------------------------------------  188 (305)
T cd02657         189 --------------------------------------------------------------------------------  188 (305)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCCCCCCcceE
Q psy2130         305 FDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYN  384 (470)
Q Consensus       305 ~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~  384 (470)
                                            +...|.++|++|+|||+||.++...+...|+...|.||.+||+.+++.    .+..|+
T Consensus       189 ----------------------k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~----~~~~Y~  242 (305)
T cd02657         189 ----------------------KTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYELCT----PSGYYE  242 (305)
T ss_pred             ----------------------EEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEecccccC----CCCcEE
Confidence                                  788999999999999999999876666789999999999999998875    457999


Q ss_pred             EEEEEEeecCCCCCcEEEEEEecC--CcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130         385 LVAVVIHCGSGPNRGHYISIVKSH--DFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ  450 (470)
Q Consensus       385 L~avV~H~G~~~~~GHY~a~vr~~--~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~  450 (470)
                      |+|||+|.|.+..+|||+||+|..  +.|+.|||+.|+++++++|.+.+|+.     ....||||||+
T Consensus       243 L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~-----~~~~aYiL~Y~  305 (305)
T cd02657         243 LVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGG-----DWHIAYILLYK  305 (305)
T ss_pred             EEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCC-----CCceEEEEEEC
Confidence            999999999878999999999986  89999999999999999998877764     35799999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02661 Peptidase_C19E A subfamily of Peptidase C19

Probab=100.00  E-value=1.4e-52  Score=410.39  Aligned_cols=273  Identities=33%  Similarity=0.540  Sum_probs=231.4

Q ss_pred             cccccc-CCchhhhh--hhhccchHHHHHhh---------------------------hcCCccchhhHHHHHHhhcccC
Q psy2130          22 YFGLVN-GKTCKEKE--DRIEKSQPFWEQTS---------------------------LQDKISLGWECSLILELDLCSS   71 (470)
Q Consensus        22 ~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~---------------------------~~~~~~~~~~~~~~~~l~~~~~   71 (470)
                      |+||.| ||||||||  |+|+++|+|...+.                           ..+. ....+..|.+++. ...
T Consensus         1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~p~~~~~~l~-~~~   78 (304)
T cd02661           1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSG-PGSAPRIFSSNLK-QIS   78 (304)
T ss_pred             CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCC-CccChHHHHHHHH-HHH
Confidence            689999 99999999  99999999932221                           1111 2222336666776 667


Q ss_pred             CCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCC
Q psy2130          72 DEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCET  151 (470)
Q Consensus        72 ~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~  151 (470)
                      +.|..+.||||+||+.+|||.|++++.........               ........++|.++|+|++.++++|..|+.
T Consensus        79 ~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~---------------~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~  143 (304)
T cd02661          79 KHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA---------------VDPSSQETTLVQQIFGGYLRSQVKCLNCKH  143 (304)
T ss_pred             HhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccc---------------cCccccCCChhhhcCCcEEeeeEEeCCCCC
Confidence            88999999999999999999999987643322110               011234567899999999999999999999


Q ss_pred             cccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccC
Q psy2130         152 VSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNF  231 (470)
Q Consensus       152 ~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~  231 (470)
                      .+.+.++|..|+|++|...+++++|+.|+.+|.+++++.|.|+.|+++..+.                            
T Consensus       144 ~s~~~e~~~~l~l~i~~~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~----------------------------  195 (304)
T cd02661         144 VSNTYDPFLDLSLDIKGADSLEDALEQFTKPEQLDGENKYKCERCKKKVKAS----------------------------  195 (304)
T ss_pred             CcCccccceeeeeecCCCCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceE----------------------------
Confidence            9999999999999999999999999999999999998999999999988777                            


Q ss_pred             CCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccc
Q psy2130         232 GNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQ  311 (470)
Q Consensus       232 gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~Qq  311 (470)
                                                                                                      
T Consensus       196 --------------------------------------------------------------------------------  195 (304)
T cd02661         196 --------------------------------------------------------------------------------  195 (304)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCCCCCCcceEEEEEEEe
Q psy2130         312 DAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIH  391 (470)
Q Consensus       312 Da~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H  391 (470)
                                     ++..|.++|++|+|+|+||.++    ...|+...|.||+.||+.++..........|+|+|||+|
T Consensus       196 ---------------~~~~i~~~P~iL~i~l~Rf~~~----~~~Ki~~~v~f~~~L~l~~~~~~~~~~~~~Y~L~~vi~H  256 (304)
T cd02661         196 ---------------KQLTIHRAPNVLTIHLKRFSNF----RGGKINKQISFPETLDLSPYMSQPNDGPLKYKLYAVLVH  256 (304)
T ss_pred             ---------------EEEEEecCCcEEEEEEeccccC----CccccCCeEecCCeechhhccccCCCCCceeeEEEEEEE
Confidence                           7788999999999999999987    237999999999999999888776667889999999999


Q ss_pred             ecCCCCCcEEEEEEec-CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130         392 CGSGPNRGHYISIVKS-HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ  450 (470)
Q Consensus       392 ~G~~~~~GHY~a~vr~-~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~  450 (470)
                      .|.+..+|||++|+|. +++|++|||+.|+++++++|            ...+||||||.
T Consensus       257 ~G~~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v------------~~~~aYil~Y~  304 (304)
T cd02661         257 SGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETV------------LSQKAYILFYI  304 (304)
T ss_pred             CCCCCCCcCCEEEEECCCCCEEEEeCCeeEECCHHHh------------cCCCcEEEEeC
Confidence            9996799999999996 78999999999999999888            36799999993

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-53  Score=419.09  Aligned_cols=293  Identities=27%  Similarity=0.482  Sum_probs=246.5

Q ss_pred             ccccccc-CCchhhhh--hhhccchHH--------------------------------HHHhhhcCCccchhhHHHHHH
Q psy2130          21 RYFGLVN-GKTCKEKE--DRIEKSQPF--------------------------------WEQTSLQDKISLGWECSLILE   65 (470)
Q Consensus        21 ~~~GL~N-GNtCy~Ns--Q~L~~~~~f--------------------------------~~~~~~~~~~~~~~~~~~~~~   65 (470)
                      |.|||.| ||||||||  |||.|++.+                                ..++..+.. ....+..|...
T Consensus       264 GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~-haf~Ps~fK~t  342 (823)
T COG5560         264 GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNL-HAFTPSGFKKT  342 (823)
T ss_pred             cccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccc-cccChHHHHHH
Confidence            6899999 99999999  999999998                                122222222 22333366666


Q ss_pred             hhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcc-cccCCCCCC-----CCCCCCCCCCCCCCchHHHHhhccc
Q psy2130          66 LDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSN-AKSKLSAPD-----GGGGDNHSSSGFEEPTWVHEIFQGI  139 (470)
Q Consensus        66 l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~s~i~~~F~g~  139 (470)
                      +. +.+..|.|+.|||++||+.+|||.|||+++...+++. .++.+++.+     ..+.+-|.-..+++.|+|.++|.|.
T Consensus       343 IG-~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgm  421 (823)
T COG5560         343 IG-SFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGM  421 (823)
T ss_pred             Hh-hhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            66 8888999999999999999999999999997644432 223333222     1234556777888999999999999


Q ss_pred             cccceeccccCCcccccCCCcccccccC----------------------------------------------------
Q psy2130         140 LTSETKCLNCETVSSKDEDFFDLQVDIK----------------------------------------------------  167 (470)
Q Consensus       140 ~~~~~~C~~C~~~s~~~~~f~~Lsl~i~----------------------------------------------------  167 (470)
                      +++++.|+.|+.+|++++||.+|+||+|                                                    
T Consensus       422 yKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v  501 (823)
T COG5560         422 YKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKV  501 (823)
T ss_pred             hhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccceeE
Confidence            9999999999999999999999999999                                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy2130         168 --------------------------------------------------------------------------------  167 (470)
Q Consensus       168 --------------------------------------------------------------------------------  167 (470)
                                                                                                      
T Consensus       502 ~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvkE  581 (823)
T COG5560         502 MCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVKE  581 (823)
T ss_pred             EEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy2130         168 --------------------------------------------------------------------------------  167 (470)
Q Consensus       168 --------------------------------------------------------------------------------  167 (470)
                                                                                                      
T Consensus       582 ~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~~  661 (823)
T COG5560         582 FEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDP  661 (823)
T ss_pred             HHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCCc
Confidence                                                                                            


Q ss_pred             -----------CCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcch
Q psy2130         168 -----------QNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCY  236 (470)
Q Consensus       168 -----------~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy  236 (470)
                                 ...||++||..|.++|.+...+.|.|+.|+...++.                                 
T Consensus       662 lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqas---------------------------------  708 (823)
T COG5560         662 LWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQAS---------------------------------  708 (823)
T ss_pred             cchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhh---------------------------------
Confidence                       247999999999999999888999999999999998                                 


Q ss_pred             hHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHH
Q psy2130         237 SNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEF  316 (470)
Q Consensus       237 ~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~  316 (470)
                                                                                                      
T Consensus       709 --------------------------------------------------------------------------------  708 (823)
T COG5560         709 --------------------------------------------------------------------------------  708 (823)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCc-ccccccCCCCCCCCCcceEEEEEEEeecCC
Q psy2130         317 LNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPL-ELRLFHLSDDAVNPDRMYNLVAVVIHCGSG  395 (470)
Q Consensus       317 ~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~-~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~  395 (470)
                                |+..++++|.+|+|||+||+....  ...|+...|+||. +|||+.+.....++...|.|+||=.|+|. 
T Consensus       709 ----------KqmelwrlP~iLiihLkRFss~rs--frdKiddlVeyPiddldLs~~~~~~~~p~liydlyavDNHygg-  775 (823)
T COG5560         709 ----------KQMELWRLPMILIIHLKRFSSVRS--FRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGG-  775 (823)
T ss_pred             ----------hhhhhhcCChheeeehhhhhhccc--chhhhhhhhccccccccccceEEeecCcceEEEeeeccccccc-
Confidence                      999999999999999999997653  3489999999998 68888776655556689999999999998 


Q ss_pred             CCCcEEEEEEec--CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEecC
Q psy2130         396 PNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRD  453 (470)
Q Consensus       396 ~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~~  453 (470)
                      ..+|||+||+|+  +++||+|||+.|++|.+++.            .+..||+|||+|+.
T Consensus       776 lsgGHYtAyarn~~n~~wy~fdDsritevdped~------------vtssaYvLFyrrk~  823 (823)
T COG5560         776 LSGGHYTAYARNFANNGWYLFDDSRITEVDPEDS------------VTSSAYVLFYRRKS  823 (823)
T ss_pred             cCCcceeeeeecccCCceEEecCccccccCcccc------------ccceeEEEEEEecC
Confidence            999999999997  78999999999999988765            48899999999974

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.2e-53  Score=381.80  Aligned_cols=299  Identities=24%  Similarity=0.315  Sum_probs=230.5

Q ss_pred             CCCCCccccccc-CCchhhhh--hhhccchHHHH-----------------------------Hhhh---cCCccchhhH
Q psy2130          16 FPPNERYFGLVN-GKTCKEKE--DRIEKSQPFWE-----------------------------QTSL---QDKISLGWEC   60 (470)
Q Consensus        16 ~~~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~-----------------------------~~~~---~~~~~~~~~~   60 (470)
                      ...+..++||+| |||||||+  |||+.+.++-.                             .+..   .-......+.
T Consensus        65 ~~dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~  144 (415)
T COG5533          65 RKDNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPR  144 (415)
T ss_pred             hhcccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchH
Confidence            334667899999 99999999  99999999811                             1100   0111222333


Q ss_pred             HHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCC---------CCCCCCCCCCCCCCCCCchH
Q psy2130          61 SLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLS---------APDGGGGDNHSSSGFEEPTW  131 (470)
Q Consensus        61 ~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~s~  131 (470)
                      +|++.+. ..++.|++..|||||||+.++||.|||+++....++.-..-..         +-..-.+-.|......+.++
T Consensus       145 nF~~i~~-~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~  223 (415)
T COG5533         145 NFIDILS-GRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSL  223 (415)
T ss_pred             HHHHHHc-cccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHH
Confidence            7899998 8999999999999999999999999999987654422111000         01111234567777888899


Q ss_pred             HHHhhccccccceeccccCCcccccCCCcccccccCC--CCCHHHHhccCCccccccCCCccccCCccccccccCCCccc
Q psy2130         132 VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQ--NTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISA  209 (470)
Q Consensus       132 i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~--~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~  209 (470)
                      |.+.|.|+..++++|..|++.|.++.+|..|.+|++.  .+-|.+|++.|.++|.+++++.|+|++|+++..++      
T Consensus       224 v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~------  297 (415)
T COG5533         224 VAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSR------  297 (415)
T ss_pred             HHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccch------
Confidence            9999999999999999999999999999999999987  45689999999999999999999999999998888      


Q ss_pred             cccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCcc
Q psy2130         210 LEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSI  289 (470)
Q Consensus       210 ~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~  289 (470)
                                                                                                      
T Consensus       298 --------------------------------------------------------------------------------  297 (415)
T COG5533         298 --------------------------------------------------------------------------------  297 (415)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceE----ecCc
Q psy2130         290 APKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRV----VFPL  365 (470)
Q Consensus       290 ~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v----~fp~  365 (470)
                                                           |+..|.++|.+|+|+|+||...-...  .|+...-    ++|-
T Consensus       298 -------------------------------------K~~~I~~lP~~LII~i~RF~i~V~~~--~kiD~p~gw~~~~~~  338 (415)
T COG5533         298 -------------------------------------KRMEILVLPDVLIIHISRFHISVMGR--KKIDTPQGWKNTASV  338 (415)
T ss_pred             -------------------------------------heEEEEecCceEEEEeeeeeEEeecc--cccCCCcchhccCCc
Confidence                                                 99999999999999999998532211  3333222    2222


Q ss_pred             cccccc-CCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcE
Q psy2130         366 ELRLFH-LSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETG  444 (470)
Q Consensus       366 ~ldl~~-~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~a  444 (470)
                      +..+.+ +.....-.+..|+|.|||||.|+ ..+|||+++|+.++.|+.|||+.|++++-..-           ....++
T Consensus       339 e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~-L~gGHY~s~v~~~~~W~~~dDs~vr~~~~~t~-----------~~~pSs  406 (415)
T COG5533         339 EVNVTLLFNNGIGYIPRKYSLLGVVCHNGT-LNGGHYFSEVKRSGTWNVYDDSQVRKGSRTTS-----------GSHPSS  406 (415)
T ss_pred             eecccccccCCCCCCccceeEEEEEeecce-ecCceeEEeeeecCceEEechhheeeccceec-----------ccCCcc
Confidence            222211 22233445689999999999998 99999999999999999999999999865321           245689


Q ss_pred             EEEEEEec
Q psy2130         445 YILFYQSR  452 (470)
Q Consensus       445 YiLfY~r~  452 (470)
                      |||||+|.
T Consensus       407 YilFY~r~  414 (415)
T COG5533         407 YILFYTRS  414 (415)
T ss_pred             eEEEEEec
Confidence            99999985

>cd02658 Peptidase_C19B A subfamily of Peptidase C19

Probab=100.00  E-value=6e-51  Score=399.90  Aligned_cols=248  Identities=25%  Similarity=0.422  Sum_probs=208.5

Q ss_pred             cccc-CCchhhhh--hhhccchHHHHHhhh----------------------------cCCc--------------cchh
Q psy2130          24 GLVN-GKTCKEKE--DRIEKSQPFWEQTSL----------------------------QDKI--------------SLGW   58 (470)
Q Consensus        24 GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~----------------------------~~~~--------------~~~~   58 (470)
                      ||.| ||||||||  |||+++|+|...+..                            ..+.              ....
T Consensus         1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~   80 (311)
T cd02658           1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK   80 (311)
T ss_pred             CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence            8999 99999999  999999999221110                            0000              0122


Q ss_pred             hHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhcc
Q psy2130          59 ECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQG  138 (470)
Q Consensus        59 ~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g  138 (470)
                      +..|+..++ ...+.|.++.|||||||+++||+.|++++...                           ..+.+.++|+|
T Consensus        81 p~~~~~~l~-~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~---------------------------~~~~~~~~f~~  132 (311)
T cd02658          81 PSMFKALIG-KGHPEFSTMRQQDALEFLLHLIDKLDRESFKN---------------------------LGLNPNDLFKF  132 (311)
T ss_pred             cHHHHHHHh-ccChhhcccccccHHHHHHHHHHHHHHhhccc---------------------------ccCCchhheEE
Confidence            337777777 78899999999999999999999999987521                           11236689999


Q ss_pred             ccccceeccccCCcccccCCCcccccccCCC--------------CCHHHHhccCCccccccCCCccccCCccccccccC
Q psy2130         139 ILTSETKCLNCETVSSKDEDFFDLQVDIKQN--------------TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQG  204 (470)
Q Consensus       139 ~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~~--------------~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~  204 (470)
                      .+.++++|..|+.++.+.++|.+|+|++|..              .+|++||+.|+.+|.+    .+.|+.|+.+..+. 
T Consensus       133 ~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i----~~~C~~C~~~~~a~-  207 (311)
T cd02658         133 MIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETI----EDFCSTCKEKTTAT-  207 (311)
T ss_pred             EeeEEEEcCCCCCEEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCcccc----cccccCCCCcccEE-
Confidence            9999999999999999999999999999853              4999999999999887    36799999988888 


Q ss_pred             CCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCC
Q psy2130         205 PNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKK  284 (470)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~  284 (470)
                                                                                                      
T Consensus       208 --------------------------------------------------------------------------------  207 (311)
T cd02658         208 --------------------------------------------------------------------------------  207 (311)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecC
Q psy2130         285 KVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFP  364 (470)
Q Consensus       285 ~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp  364 (470)
                                                                ++..|.++|++|+|+|+||.++... ...|+...|.||
T Consensus       208 ------------------------------------------k~~~i~~lP~vLii~LkRF~~~~~~-~~~Ki~~~v~~p  244 (311)
T cd02658         208 ------------------------------------------KTTGFKTFPDYLVINMKRFQLLENW-VPKKLDVPIDVP  244 (311)
T ss_pred             ------------------------------------------EEEEeecCCceEEEEeEEEEecCCC-ceEeeccccccC
Confidence                                                      8899999999999999999996432 347999999999


Q ss_pred             cccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEecC----CcEEEEeCcceeeechhhhhhhcCCCCCCCCC
Q psy2130         365 LELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSH----DFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKS  440 (470)
Q Consensus       365 ~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~----~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~  440 (470)
                      ..+           ....|+|+|||+|.|.+.++|||++|+|..    ++||+|||+.|+++++.+|            .
T Consensus       245 ~~l-----------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~------------~  301 (311)
T cd02658         245 EEL-----------GPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPE------------M  301 (311)
T ss_pred             CcC-----------CCCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECCcccc------------c
Confidence            877           346899999999999878999999999987    8999999999999998777            4


Q ss_pred             CCcEEEEEEE
Q psy2130         441 SETGYILFYQ  450 (470)
Q Consensus       441 ~~~aYiLfY~  450 (470)
                      ..+||||||+
T Consensus       302 ~~~~YilfY~  311 (311)
T cd02658         302 KKLGYIYFYQ  311 (311)
T ss_pred             CCcceEEEEC
Confidence            7899999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=100.00  E-value=6.7e-50  Score=407.25  Aligned_cols=268  Identities=21%  Similarity=0.293  Sum_probs=212.3

Q ss_pred             CCccccccc-CCchhhhh--hhhccchHHHHHhhhc---------------------------CC-ccchhhHHHHHHhh
Q psy2130          19 NERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQ---------------------------DK-ISLGWECSLILELD   67 (470)
Q Consensus        19 ~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~---------------------------~~-~~~~~~~~~~~~l~   67 (470)
                      .+|++||.| ||||||||  |||+++|+|...+...                           .. .....+..|+++++
T Consensus       116 ~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~  195 (440)
T cd02669         116 LPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVS  195 (440)
T ss_pred             cCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHH
Confidence            457999999 99999999  9999999993322211                           00 02233337778887


Q ss_pred             cccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceecc
Q psy2130          68 LCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCL  147 (470)
Q Consensus        68 ~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~  147 (470)
                      ....+.|.++.||||||||.+|||.||+++....                        ....++|.++|+|++.++++|.
T Consensus       196 ~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~------------------------~~~~~ii~~~F~G~l~~~~~c~  251 (440)
T cd02669         196 KVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK------------------------KPNSSIIHDCFQGKVQIETQKI  251 (440)
T ss_pred             hhcccccCCcccCCHHHHHHHHHHHHHHHhccCC------------------------CCCCCcceeccCceEEEEEEee
Confidence            4445689999999999999999999999885321                        2356789999999999999987


Q ss_pred             ccC---------------CcccccCCCcccccccCCCCC-----HHHHhccCCccccccCCCccccCCccccccccCCCc
Q psy2130         148 NCE---------------TVSSKDEDFFDLQVDIKQNTS-----ITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNI  207 (470)
Q Consensus       148 ~C~---------------~~s~~~~~f~~Lsl~i~~~~s-----l~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~  207 (470)
                      .|.               ..+.+.++|++|+|+||....     ...+|..+...|.+   +.|.|+.|.....+.    
T Consensus       252 ~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L---~ky~~~~c~~~~~a~----  324 (440)
T cd02669         252 KPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLL---KKYDGKTETELKDSL----  324 (440)
T ss_pred             cccccccccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHH---HhcCCccceecccce----
Confidence            654               246778999999999997421     12333344444445   458888887766666    


Q ss_pred             cccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCC
Q psy2130         208 SALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVG  287 (470)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~  287 (470)
                                                                                                      
T Consensus       325 --------------------------------------------------------------------------------  324 (440)
T cd02669         325 --------------------------------------------------------------------------------  324 (440)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcc-
Q psy2130         288 SIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLE-  366 (470)
Q Consensus       288 ~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~-  366 (470)
                                                             ++..|.++|++|+|||+||.++.  ....|+.+.|+||.. 
T Consensus       325 ---------------------------------------k~~~I~~LP~vLiihLKRF~~~~--~~~~K~~t~V~FP~~~  363 (440)
T cd02669         325 ---------------------------------------KRYLISRLPKYLIFHIKRFSKNN--FFKEKNPTIVNFPIKN  363 (440)
T ss_pred             ---------------------------------------EEEEEeeCCcEEEEEEecccCCC--CccccCCCEEECCCCc
Confidence                                                   88999999999999999999875  345899999999997 


Q ss_pred             cccccCCCC---CCCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCC
Q psy2130         367 LRLFHLSDD---AVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSS  441 (470)
Q Consensus       367 ldl~~~~~~---~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~  441 (470)
                      |||.+++..   .......|+|+|||+|.|..+.+|||+||+|+  +++||+|||+.|+++++++|            ..
T Consensus       364 LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v------------~~  431 (440)
T cd02669         364 LDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLI------------FL  431 (440)
T ss_pred             cchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHh------------cc
Confidence            899998753   23466899999999999994499999999996  58999999999999999988            57


Q ss_pred             CcEEEEEEE
Q psy2130         442 ETGYILFYQ  450 (470)
Q Consensus       442 ~~aYiLfY~  450 (470)
                      .+||||||+
T Consensus       432 ~eaYll~Y~  440 (440)
T cd02669         432 SESYIQIWE  440 (440)
T ss_pred             CCceEEEeC
Confidence            899999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02662 Peptidase_C19F A subfamily of Peptidase C19

Probab=100.00  E-value=2.6e-48  Score=365.84  Aligned_cols=209  Identities=34%  Similarity=0.638  Sum_probs=183.6

Q ss_pred             cccc-CCchhhhh--hhhccchHHHHHhhhcCCccchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhc
Q psy2130          24 GLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSE  100 (470)
Q Consensus        24 GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~  100 (470)
                      ||+| ||||||||  |+|+++|+|...+..-.                         .||||||||..||+.|+..    
T Consensus         1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~-------------------------~QqDa~EFl~~ll~~l~~~----   51 (240)
T cd02662           1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL-------------------------EQQDAHELFQVLLETLEQL----   51 (240)
T ss_pred             CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH-------------------------hhcCHHHHHHHHHHHHHHh----
Confidence            8999 99999999  99999999854332111                         7999999999999999932    


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCccc-ccCCCcccccccCCC-----CCHHH
Q psy2130         101 RPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSS-KDEDFFDLQVDIKQN-----TSITQ  174 (470)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~-~~~~f~~Lsl~i~~~-----~sl~~  174 (470)
                                                     +.++|.|++.++++|..|++++. +.|+|.+|+|+||..     .+|++
T Consensus        52 -------------------------------i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~~~~~~sl~~  100 (240)
T cd02662          52 -------------------------------LKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSGSGTTLEH  100 (240)
T ss_pred             -------------------------------ccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccCCCCCCCHHH
Confidence                                           34799999999999999999966 599999999999974     69999


Q ss_pred             HhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHH
Q psy2130         175 CLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRV  254 (470)
Q Consensus       175 ~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i  254 (470)
                      ||+.|+.+|.+   ..|.|++|      .                                                   
T Consensus       101 ~L~~~~~~E~l---~~~~C~~C------~---------------------------------------------------  120 (240)
T cd02662         101 CLDDFLSTEII---DDYKCDRC------Q---------------------------------------------------  120 (240)
T ss_pred             HHHHhcCcccc---cCcCCCCC------e---------------------------------------------------
Confidence            99999999998   45899999      2                                                   


Q ss_pred             hccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCC
Q psy2130         255 LEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKL  334 (470)
Q Consensus       255 ~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~l  334 (470)
                                                                                                ..|.++
T Consensus       121 --------------------------------------------------------------------------~~i~~l  126 (240)
T cd02662         121 --------------------------------------------------------------------------TVIVRL  126 (240)
T ss_pred             --------------------------------------------------------------------------EEeecC
Confidence                                                                                      235789


Q ss_pred             CceEEEEeeeeeeeccccccccccceEecCcccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEecC------
Q psy2130         335 PMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSH------  408 (470)
Q Consensus       335 P~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~------  408 (470)
                      |++|+|||+||.++.. +...|+...|.||+.|           ....|+|+|||+|.|. ..+|||++|+|..      
T Consensus       127 P~vLii~LkRF~~~~~-~~~~K~~~~v~fp~~l-----------~~~~Y~L~avi~H~G~-~~~GHY~~~~k~~~~~~~~  193 (240)
T cd02662         127 PQILCIHLSRSVFDGR-GTSTKNSCKVSFPERL-----------PKVLYRLRAVVVHYGS-HSSGHYVCYRRKPLFSKDK  193 (240)
T ss_pred             CcEEEEEEEEEEEcCC-CceeeeccEEECCCcc-----------CCceEEEEEEEEEecc-CCCceEEEEEeCCCccccc
Confidence            9999999999999876 5668999999999988           4568999999999998 5999999999976      


Q ss_pred             ----------------CcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130         409 ----------------DFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ  450 (470)
Q Consensus       409 ----------------~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~  450 (470)
                                      +.||+|||+.|+++++++|.           ...+||||||+
T Consensus       194 ~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~-----------~~~~aY~LfYe  240 (240)
T cd02662         194 EPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVL-----------EQKSAYMLFYE  240 (240)
T ss_pred             ccccccccccccCccCCCEEEEechheEEeCHHHHh-----------hCCCEEEEEeC
Confidence                            89999999999999998883           26799999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1868|consensus

Probab=100.00  E-value=6.7e-47  Score=388.15  Aligned_cols=302  Identities=30%  Similarity=0.419  Sum_probs=239.8

Q ss_pred             CCCccccccc-CCchhhhh--hhhccchHHH--------HH-----------------------hhhcCCccchhhHHHH
Q psy2130          18 PNERYFGLVN-GKTCKEKE--DRIEKSQPFW--------EQ-----------------------TSLQDKISLGWECSLI   63 (470)
Q Consensus        18 ~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~--------~~-----------------------~~~~~~~~~~~~~~~~   63 (470)
                      ...+++||.| |||||||+  |||+.++.|.        .+                       ...........+..|+
T Consensus       297 ~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f~  376 (653)
T KOG1868|consen  297 DVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRFI  376 (653)
T ss_pred             cccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHHH
Confidence            4568999999 99999999  9999999881        00                       0111111223344888


Q ss_pred             HHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCC---------CCCCCCCCCCCCCCCCCchHHHH
Q psy2130          64 LELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLS---------APDGGGGDNHSSSGFEEPTWVHE  134 (470)
Q Consensus        64 ~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~s~i~~  134 (470)
                      ..+. ++.+.|.++.|||||||+.++++.||+|++....+........         .......-.|........+.|.+
T Consensus       377 ~~~~-~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~  455 (653)
T KOG1868|consen  377 RVLK-RYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGD  455 (653)
T ss_pred             HHHh-hcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHH
Confidence            8888 9999999999999999999999999999987654321111110         01111122344444455566999


Q ss_pred             hhccccccceeccccCCcccccCCCcccccccCC------CCCHHHHhccCCccccccCCCccccCCccccccccCCCcc
Q psy2130         135 IFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQ------NTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNIS  208 (470)
Q Consensus       135 ~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~------~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~  208 (470)
                      +|.|++.+.++|..|++.+.++++|.+|+|+||.      .++|++|++.|++.|.+++++.|.|++|+.+.....    
T Consensus       456 lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~----  531 (653)
T KOG1868|consen  456 LFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKT----  531 (653)
T ss_pred             HHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCcccccc----
Confidence            9999999999999999999999999999999996      266999999999999999999999999998754420    


Q ss_pred             ccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCc
Q psy2130         209 ALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGS  288 (470)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~  288 (470)
                                                                                                      
T Consensus       532 --------------------------------------------------------------------------------  531 (653)
T KOG1868|consen  532 --------------------------------------------------------------------------------  531 (653)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCc-cc
Q psy2130         289 IAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPL-EL  367 (470)
Q Consensus       289 ~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~-~l  367 (470)
                                      .                     |...|+++|++|++||+||..++  +...|....|+||+ +.
T Consensus       532 ----------------l---------------------K~~~i~~lp~iLiihL~Rf~~~~--~~~~k~~~~v~~~~~~~  572 (653)
T KOG1868|consen  532 ----------------L---------------------KKLTILRLPKILIIHLKRFSSDG--NSFNKLSTGVDFPLREA  572 (653)
T ss_pred             ----------------c---------------------ceeeeecCCHHHHHHHHHhccCc--ccccccceeeccchHhh
Confidence                            0                     78899999999999999999876  34478889999998 45


Q ss_pred             ccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEE
Q psy2130         368 RLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY  445 (470)
Q Consensus       368 dl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aY  445 (470)
                      ++.+......+....|+|+|||+|.|+ ..+|||+||++.  .+.|+.|||+.|+.++..++            ....||
T Consensus       573 ~~~~~~~~~~~~~~~Y~L~aVv~H~Gt-l~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~------------~~s~aY  639 (653)
T KOG1868|consen  573 DLSPRFAEKGNNPKSYRLYAVVNHSGT-LNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDV------------GSSSAY  639 (653)
T ss_pred             hhchhccccCCCccceeeEEEEeccCc-ccCCceEEEEeecCCCceEEecCeeeeccccccc------------cCCCce
Confidence            555555555666778999999999995 999999999986  47899999999998888777            368999


Q ss_pred             EEEEEecCCCc
Q psy2130         446 ILFYQSRDSTD  456 (470)
Q Consensus       446 iLfY~r~~~~~  456 (470)
                      ||||+|.+..+
T Consensus       640 IlFY~~~~~~~  650 (653)
T KOG1868|consen  640 ILFYERLGIFE  650 (653)
T ss_pred             EEEeecCCccc
Confidence            99999987654

>cd02674 Peptidase_C19R A subfamily of peptidase C19

Probab=100.00  E-value=4.5e-46  Score=349.67  Aligned_cols=217  Identities=39%  Similarity=0.677  Sum_probs=195.5

Q ss_pred             cccc-CCchhhhh--hhhccchHHHHHhhhcCCccchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhc
Q psy2130          24 GLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSE  100 (470)
Q Consensus        24 GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~  100 (470)
                      ||.| |||||+||  |+|++                                     .||||+||+.+||+.|+      
T Consensus         1 gl~n~~~~cy~n~~~Q~l~~-------------------------------------~QqDa~Ef~~~ll~~l~------   37 (230)
T cd02674           1 GLRNLGNTCYMNSILQCLSA-------------------------------------DQQDAQEFLLFLLDGLH------   37 (230)
T ss_pred             CccccCcchhhhHHHHHHHH-------------------------------------hhhhHHHHHHHHHHHHh------
Confidence            8999 99999999  99976                                     69999999999999999      


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCcccccCCCcccccccCCC------CCHHH
Q psy2130         101 RPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQN------TSITQ  174 (470)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~~------~sl~~  174 (470)
                                                   +.+.++|+|++..+++|..|++.+.+.++|+.|+|++|..      .+|++
T Consensus        38 -----------------------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~~~~~~sl~~   88 (230)
T cd02674          38 -----------------------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVTLED   88 (230)
T ss_pred             -----------------------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccCCCCCCCHHH
Confidence                                         2377999999999999999999999999999999999964      49999


Q ss_pred             HhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHH
Q psy2130         175 CLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRV  254 (470)
Q Consensus       175 ~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i  254 (470)
                      ||+.|+.+|.+++.+.+.|++|+.+..+.                                                   
T Consensus        89 ~L~~~~~~e~~~~~~~~~C~~C~~~~~~~---------------------------------------------------  117 (230)
T cd02674          89 CLRLFTKEETLDGDNAWKCPKCKKKRKAT---------------------------------------------------  117 (230)
T ss_pred             HHHHhcCccccCCCCceeCCCCCCccceE---------------------------------------------------
Confidence            99999999999999999999999988777                                                   


Q ss_pred             hccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCC
Q psy2130         255 LEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKL  334 (470)
Q Consensus       255 ~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~l  334 (470)
                                                                                              +...+.++
T Consensus       118 ------------------------------------------------------------------------~~~~i~~l  125 (230)
T cd02674         118 ------------------------------------------------------------------------KKLTISRL  125 (230)
T ss_pred             ------------------------------------------------------------------------EEEEEecC
Confidence                                                                                    78889999


Q ss_pred             CceEEEEeeeeeeeccccccccccceEecCc-ccccccCCC-CCCCCCcceEEEEEEEeecCCCCCcEEEEEEecC--Cc
Q psy2130         335 PMILALHLKRFKYMDKMNRHVKVSHRVVFPL-ELRLFHLSD-DAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSH--DF  410 (470)
Q Consensus       335 P~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~-~ldl~~~~~-~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~--~~  410 (470)
                      |++|+|+|+||.++.  ....|+...|.||. .+|+.++.. ........|+|+|||+|.|.. .+|||++|+|..  +.
T Consensus       126 P~iLii~l~R~~~~~--~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~~-~~GHY~~~~~~~~~~~  202 (230)
T cd02674         126 PKVLIIHLKRFSFSR--GSTRKLTTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSL-NGGHYTAYCKNNETND  202 (230)
T ss_pred             ChhhEeEhhheecCC--CCcccCCceEeccccccccccccCcccCCCCceEEEEEEEEeeCCC-CCcEEEEEEECCCCCc
Confidence            999999999999976  44589999999995 588877642 233466889999999999994 999999999976  89


Q ss_pred             EEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130         411 WLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ  450 (470)
Q Consensus       411 W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~  450 (470)
                      |++|||+.|++++++++            .+.+||||||+
T Consensus       203 W~~fnD~~V~~i~~~~~------------~~~~~YlL~Y~  230 (230)
T cd02674         203 WYKFDDSRVTKVSESSV------------VSSSAYILFYE  230 (230)
T ss_pred             eEEEcCCeEEEcCHHHc------------cCCCceEEEeC
Confidence            99999999999999887            37899999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19

Probab=100.00  E-value=1.5e-45  Score=345.32  Aligned_cols=236  Identities=25%  Similarity=0.413  Sum_probs=183.9

Q ss_pred             ccc-CCchhhhh--hhhccchHHHHHhhhcCCccchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcC
Q psy2130          25 LVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSER  101 (470)
Q Consensus        25 L~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~  101 (470)
                      |.| ||.||+||  |+|.++                         + +..+.|.+++||||||||++|||.|++++....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i-------------------------~-~~~~~F~~~~QQDAhEFL~~LLd~l~~~~~~~~   55 (245)
T cd02673           2 LVNTGNSCYFNSTMQALSSI-------------------------G-KINTEFDNDDQQDAHEFLLTLLEAIDDIMQVNR   55 (245)
T ss_pred             ceecCCeeeehhHHHHHHHH-------------------------h-hhhhhcCCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence            789 99999999  998532                         2 556899999999999999999999999886543


Q ss_pred             CCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCcccccCCCcccccccCC--CCCHHHHhccC
Q psy2130         102 PQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQ--NTSITQCLRGF  179 (470)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~--~~sl~~~L~~~  179 (470)
                      +.......                ......+.++|+|++.++++|..|++++.+.++|++|+|++|.  ..++++|+..|
T Consensus        56 ~~~~~~~~----------------~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~~le~l~~~~  119 (245)
T cd02673          56 TNVPPSNI----------------EIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNKLDIDELLISNF  119 (245)
T ss_pred             ccCCCCcc----------------cccccCHhHheeeEEEeEEEecCCCCeeeeccccceeccccccCCcchHHHHHHHh
Confidence            22110000                0011124588999999999999999999999999999999997  46788999888


Q ss_pred             CccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccc
Q psy2130         180 SSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKA  259 (470)
Q Consensus       180 ~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~  259 (470)
                      .+.+.+    +|.|++|+.+ .+.                                                        
T Consensus       120 ~~~~~~----e~~C~~C~~~-~a~--------------------------------------------------------  138 (245)
T cd02673         120 KTWSPI----EKDCSSCKCE-SAI--------------------------------------------------------  138 (245)
T ss_pred             hccccc----CccCCCCCCc-cce--------------------------------------------------------
Confidence            877664    5899999875 444                                                        


Q ss_pred             ccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEE
Q psy2130         260 KNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILA  339 (470)
Q Consensus       260 ~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~  339 (470)
                                                                                         +..+|.++|++|+
T Consensus       139 -------------------------------------------------------------------k~~~i~~~P~vL~  151 (245)
T cd02673         139 -------------------------------------------------------------------SSERIMTFPECLS  151 (245)
T ss_pred             -------------------------------------------------------------------eechhhhCChhhE
Confidence                                                                               6677999999999


Q ss_pred             EEeeeeeeeccccccccccceEecCcccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEec---CCcEEEEeC
Q psy2130         340 LHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS---HDFWLLFDD  416 (470)
Q Consensus       340 i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~---~~~W~~~nD  416 (470)
                      |+|+||.+.....      ..+..+ .+++.++..    ....|+|+|||+|.|.+.++|||+||+|.   +++||.|||
T Consensus       152 i~lkRf~~~~~~~------~~~~~~-~~~~~~~~~----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD  220 (245)
T cd02673         152 INLKRYKLRIATS------DYLKKN-EEIMKKYCG----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSD  220 (245)
T ss_pred             EeeEeeeeccccc------cccccc-ccccccccC----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeC
Confidence            9999997653221      112111 234444442    45679999999999987899999999996   579999999


Q ss_pred             cceeeechhhhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130         417 DVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ  450 (470)
Q Consensus       417 ~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~  450 (470)
                      +.|+++++++|.+         ....+||||||+
T Consensus       221 ~~V~~v~~~~v~~---------~~~~~aYiLFY~  245 (245)
T cd02673         221 DEIRPVSKNDVST---------NARSSGYLIFYD  245 (245)
T ss_pred             ceeeEcCHHHHhh---------ccCCceEEEEEC
Confidence            9999999998832         125799999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1866|consensus

Probab=100.00  E-value=5.3e-47  Score=377.42  Aligned_cols=290  Identities=25%  Similarity=0.433  Sum_probs=242.9

Q ss_pred             Cccccccc-CCchhhhh--hhhccchHH------HHHh-----------------------hhcCCccchhhHHHHHHhh
Q psy2130          20 ERYFGLVN-GKTCKEKE--DRIEKSQPF------WEQT-----------------------SLQDKISLGWECSLILELD   67 (470)
Q Consensus        20 ~~~~GL~N-GNtCy~Ns--Q~L~~~~~f------~~~~-----------------------~~~~~~~~~~~~~~~~~l~   67 (470)
                      .+.|||+| |+|||||+  |-|+++|.+      +..+                       ..++- ...++..|-+.++
T Consensus        93 ~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~l-QyyVPeg~Wk~Fr  171 (944)
T KOG1866|consen   93 EGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQL-QYYVPEGFWKQFR  171 (944)
T ss_pred             cceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhh-hhhcchhHHHHhh
Confidence            46899999 99999999  999999888      1111                       11111 1111222333333


Q ss_pred             cccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceecc
Q psy2130          68 LCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCL  147 (470)
Q Consensus        68 ~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~  147 (470)
                       --+......+||||-||+..|||.+++.+++..                          .+-++...|+|....+..|.
T Consensus       172 -~~~~pln~reqhDA~eFf~sLld~~De~LKklg--------------------------~p~lf~n~f~G~ysdqKIC~  224 (944)
T KOG1866|consen  172 -LWGEPLNLREQHDALEFFNSLLDSLDEALKKLG--------------------------HPQLFSNTFGGSYSDQKICQ  224 (944)
T ss_pred             -ccCCccchHhhhhHHHHHHHHHHHHHHHHHHhC--------------------------CcHHHHHHhcCccchhhhhc
Confidence             223456778999999999999999999997542                          34568899999999999999


Q ss_pred             ccCCcccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccC
Q psy2130         148 NCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFG  227 (470)
Q Consensus       148 ~C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  227 (470)
                      .|-+.....|+|..|+|+|. ..+|++.|+.|++.|.++|.|.|+|++|..+....                        
T Consensus       225 ~CpHRY~~eE~F~~l~l~i~-~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~Tv------------------------  279 (944)
T KOG1866|consen  225 GCPHRYECEESFTTLNLDIR-HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTV------------------------  279 (944)
T ss_pred             cCCcccCccccceeeeeecc-cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhH------------------------
Confidence            99999999999999999999 88999999999999999999999999999998777                        


Q ss_pred             cccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCc
Q psy2130         228 LVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDN  307 (470)
Q Consensus       228 L~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~  307 (470)
                                                                                                      
T Consensus       280 --------------------------------------------------------------------------------  279 (944)
T KOG1866|consen  280 --------------------------------------------------------------------------------  279 (944)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC-----------
Q psy2130         308 YMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA-----------  376 (470)
Q Consensus       308 ~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~-----------  376 (470)
                                         ++..|.+||++|+|+|+||.++-..+...|.+..+.||-+|||.+++..+           
T Consensus       280 -------------------kRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYtvsg~a~~e~~~~~~  340 (944)
T KOG1866|consen  280 -------------------KRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYTVSGVAKLEGENVES  340 (944)
T ss_pred             -------------------HHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcCCceeehhhhhhccccCCc
Confidence                               99999999999999999999998877889999999999999999986332           


Q ss_pred             ------CCCCcceEEEEEEEeecCCCCCcEEEEEEec-----CCcEEEEeCcceeeechhhhh-hhcCCCC-------CC
Q psy2130         377 ------VNPDRMYNLVAVVIHCGSGPNRGHYISIVKS-----HDFWLLFDDDVVDKIDQSTIE-DFFGLTS-------DH  437 (470)
Q Consensus       377 ------~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~-----~~~W~~~nD~~V~~v~~~~v~-~~~g~~~-------~~  437 (470)
                            +..+.+|+|+||++|.|. +++|||++|++.     +++||+|||..|++++..+++ ++|||..       +.
T Consensus       341 g~~~e~s~~t~~YeLvGVlvHSGq-AsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~  419 (944)
T KOG1866|consen  341 GQQLEQSAGTTKYELVGVLVHSGQ-ASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSY  419 (944)
T ss_pred             CcccccccCcceeEEEEEEEeccc-ccCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccch
Confidence                  235678999999999999 999999999984     479999999999999998886 5888761       23


Q ss_pred             CCCCCcEEEEEEEecCCCccccCCC
Q psy2130         438 QKSSETGYILFYQSRDSTDARTMNS  462 (470)
Q Consensus       438 ~~~~~~aYiLfY~r~~~~~~~~~~~  462 (470)
                      +.++++||||||+|.+..+.+..++
T Consensus       420 rrR~WNAYmlFYer~~d~p~~~~p~  444 (944)
T KOG1866|consen  420 RRRWWNAYMLFYERMDDIPTDDEPI  444 (944)
T ss_pred             HHHhhhhHHHHHHHhcCCCcccccc
Confidence            3489999999999999988877665

>cd02665 Peptidase_C19I A subfamily of Peptidase C19

Probab=100.00  E-value=6.2e-45  Score=334.37  Aligned_cols=222  Identities=23%  Similarity=0.378  Sum_probs=185.0

Q ss_pred             cccc-CCchhhhh--hhhccchHHHHHhhhcCCccchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhc
Q psy2130          24 GLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSE  100 (470)
Q Consensus        24 GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~  100 (470)
                      ||.| ||||++|+  |+|++                                     .||||+||+..|||.|++++...
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~-------------------------------------~QQDa~Ef~~~Lld~Le~~l~~~   43 (228)
T cd02665           1 GLKNVGNTCWFSAVIQSLFS-------------------------------------QQQDVSEFTHLLLDWLEDAFQAA   43 (228)
T ss_pred             CccccCcchhHHHHHHHHHH-------------------------------------HHHHHHHHHHHHHHHHHHHhccc
Confidence            8999 99999999  99975                                     59999999999999999998632


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCcccccCCCcccccccCCCCCHHHHhccCC
Q psy2130         101 RPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFS  180 (470)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~  180 (470)
                      ....                  ....+..++|.++|+|++.+++.|  |+..+.+.|+|++|+|+|.+..+|++||+.|+
T Consensus        44 ~~~~------------------~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~~~~L~e~L~~~~  103 (228)
T cd02665          44 AEAI------------------SPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNGYGNLHECLEAAM  103 (228)
T ss_pred             cccc------------------cccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECCCCCHHHHHHHhh
Confidence            1100                  011245678999999999976665  88889999999999999999999999999999


Q ss_pred             ccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccc
Q psy2130         181 STETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAK  260 (470)
Q Consensus       181 ~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~  260 (470)
                      .+|.+++++   |.+|   ..+.                                                         
T Consensus       104 ~ee~l~~~~---~~~~---~~~~---------------------------------------------------------  120 (228)
T cd02665         104 FEGEVELLP---SDHS---VKSG---------------------------------------------------------  120 (228)
T ss_pred             hhccccccc---ccch---hhhh---------------------------------------------------------
Confidence            988886533   2222   2222                                                         


Q ss_pred             cccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEE
Q psy2130         261 NKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILAL  340 (470)
Q Consensus       261 ~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i  340 (470)
                                                                                        ++..|.++|++|+|
T Consensus       121 ------------------------------------------------------------------~~~~i~~lP~vL~i  134 (228)
T cd02665         121 ------------------------------------------------------------------QERWFTELPPVLTF  134 (228)
T ss_pred             ------------------------------------------------------------------hhhhhhhCChhhEE
Confidence                                                                              56678999999999


Q ss_pred             EeeeeeeeccccccccccceEecCcccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcc
Q psy2130         341 HLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDV  418 (470)
Q Consensus       341 ~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~  418 (470)
                      ||+||.++.  +...|+.+.|+||.+|           ....|+|+|||+|.|. +++|||++|+|+  +++|++|||+.
T Consensus       135 ~LkRF~~~~--~~~~Ki~~~v~FP~~l-----------~~~~Y~L~aVi~H~G~-~~~GHY~~~i~~~~~~~W~~fdD~~  200 (228)
T cd02665         135 ELSRFEFNQ--GRPEKIHDKLEFPQII-----------QQVPYELHAVLVHEGQ-ANAGHYWAYIYKQSRQEWEKYNDIS  200 (228)
T ss_pred             EeEeeEEcC--CccEECCEEEEeeCcc-----------CCceeEEEEEEEecCC-CCCCEEEEEEEcCCCCEEEEEECCe
Confidence            999999976  4558999999999987           2458999999999998 899999999985  58999999999


Q ss_pred             eeeechhhhh-hhcCCCCCCCCCCCcEEEEEEE
Q psy2130         419 VDKIDQSTIE-DFFGLTSDHQKSSETGYILFYQ  450 (470)
Q Consensus       419 V~~v~~~~v~-~~~g~~~~~~~~~~~aYiLfY~  450 (470)
                      |+++++++|. +.||+.     ...+||||||.
T Consensus       201 V~~~~~~~v~~~~fGg~-----~~~~AYiLfYv  228 (228)
T cd02665         201 VTESSWEEVERDSFGGG-----RNPSAYCLMYI  228 (228)
T ss_pred             eEEcCHHHHhhhccCCC-----CCCceEEEEEC
Confidence            9999999885 467764     26899999994

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0944|consensus

Probab=100.00  E-value=2.4e-43  Score=349.31  Aligned_cols=264  Identities=25%  Similarity=0.413  Sum_probs=217.8

Q ss_pred             CCCccccccc-CCchhhhh--hhhccchHH-----------------------------HHHhhhcCCcc--------ch
Q psy2130          18 PNERYFGLVN-GKTCKEKE--DRIEKSQPF-----------------------------WEQTSLQDKIS--------LG   57 (470)
Q Consensus        18 ~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f-----------------------------~~~~~~~~~~~--------~~   57 (470)
                      .+++++||+| ||+|||||  |+|++++.|                             ...+...+-..        .+
T Consensus       303 ~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qng  382 (763)
T KOG0944|consen  303 FGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNG  382 (763)
T ss_pred             cCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCC
Confidence            4678999999 99999999  999999999                             11111111111        24


Q ss_pred             hhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhc
Q psy2130          58 WECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQ  137 (470)
Q Consensus        58 ~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~  137 (470)
                      ..+..++.+.++.+|.|..++||||+|||++||+.|.+-...                            ....++++|.
T Consensus       383 IsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs----------------------------~~~nptd~fr  434 (763)
T KOG0944|consen  383 ISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRS----------------------------SLPNPTDLFR  434 (763)
T ss_pred             cCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcccc----------------------------cCCCHHHHHH
Confidence            555555555559999999999999999999999999983210                            0023679999


Q ss_pred             cccccceeccccCCcccccCCCcccccccCC------CCCHHHHhccCCccccccCCCccccCCccccccccCCCccccc
Q psy2130         138 GILTSETKCLNCETVSSKDEDFFDLQVDIKQ------NTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALE  211 (470)
Q Consensus       138 g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~------~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~  211 (470)
                      ..+..+++|..|+++++++++-..|.||||-      ..++.+||..|+.+.+    .+|.|..|+.+..++        
T Consensus       435 F~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~pq~----~df~s~ac~~K~~a~--------  502 (763)
T KOG0944|consen  435 FEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEPQV----DDFWSTACGEKKGAT--------  502 (763)
T ss_pred             hhhhhhhhhhccccccccchhheeeEeeccccccccccCCHHHHHHHhcCCcc----hhhhhHhhcCccccc--------
Confidence            9999999999999999999999999999983      5699999999999944    579999999999998        


Q ss_pred             cccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccCh
Q psy2130         212 KEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAP  291 (470)
Q Consensus       212 ~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p  291 (470)
                                                                                                      
T Consensus       503 --------------------------------------------------------------------------------  502 (763)
T KOG0944|consen  503 --------------------------------------------------------------------------------  502 (763)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCccccccc
Q psy2130         292 KKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFH  371 (470)
Q Consensus       292 ~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~  371 (470)
                                                         +...++++|.+|+|++.||.+.+  ....|+...|++|+.||++.
T Consensus       503 -----------------------------------kt~~~ksfP~yLiiqv~rf~~~d--w~pkKld~~iempe~ldls~  545 (763)
T KOG0944|consen  503 -----------------------------------KTTRFKSFPDYLIIQVGRFTLQD--WVPKKLDVSIEMPEELDLSS  545 (763)
T ss_pred             -----------------------------------cccccccCCceEEEEeeEEEecC--ceeeeeccceecchhhchhh
Confidence                                               88999999999999999999943  34589999999999999876


Q ss_pred             CCCCC---------------------------------------------------------------------------
Q psy2130         372 LSDDA---------------------------------------------------------------------------  376 (470)
Q Consensus       372 ~~~~~---------------------------------------------------------------------------  376 (470)
                      +...+                                                                           
T Consensus       546 ~rs~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~  625 (763)
T KOG0944|consen  546 YRSKGLQPGEEALPDEAPETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGN  625 (763)
T ss_pred             hhhcCCCCcccccCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCC
Confidence            53211                                                                           


Q ss_pred             ---------------------------------------------------------------------------CCCCc
Q psy2130         377 ---------------------------------------------------------------------------VNPDR  381 (470)
Q Consensus       377 ---------------------------------------------------------------------------~~~~~  381 (470)
                                                                                                 .+.+.
T Consensus       626 ~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~  705 (763)
T KOG0944|consen  626 SPKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPG  705 (763)
T ss_pred             CCccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCc
Confidence                                                                                       34567


Q ss_pred             ceEEEEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEec
Q psy2130         382 MYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSR  452 (470)
Q Consensus       382 ~Y~L~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~  452 (470)
                      .|+|.|+|+|.|+++.+|||||++|+.|+|+.|||++|- .+.+             +.+..+||+||+|.
T Consensus       706 ~Y~L~a~IsHmGts~~sGHYV~hirKegkWVlfNDeKv~-~S~~-------------ppK~lgYvY~y~R~  762 (763)
T KOG0944|consen  706 KYALFAFISHMGTSAHSGHYVCHIRKEGKWVLFNDEKVA-ASQE-------------PPKDLGYVYLYTRI  762 (763)
T ss_pred             ceeEEEEEecCCCCCCCcceEEEEeecCcEEEEcchhhh-hccC-------------ChhhcceEEEEEec
Confidence            899999999999999999999999999999999999987 3332             35889999999995

>KOG4598|consensus

Probab=100.00  E-value=3.6e-43  Score=347.06  Aligned_cols=283  Identities=27%  Similarity=0.496  Sum_probs=248.3

Q ss_pred             CCccccccc-CCchhhhh--hhhccchHHHHHhhhcCCccchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHH
Q psy2130          19 NERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINE   95 (470)
Q Consensus        19 ~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~e   95 (470)
                      +.++|||.| .-|||+|+  |+|+..+.|......+.+ ...-...+.+.+.|....   .++|||.+|+.+.++|+|+-
T Consensus        84 ~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~~-~~~et~dlt~sfgw~s~e---a~~qhdiqelcr~mfdaleh  159 (1203)
T KOG4598|consen   84 GHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSEN-DSLETKDLTQSFGWTSNE---AYDQHDVQELCRLMFDALEH  159 (1203)
T ss_pred             CcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCCc-ccccchhhHhhcCCCcch---hhhhhhHHHHHHHHHHHHHh
Confidence            468999999 99999999  999999999888888777 444556888888875544   34699999999999999987


Q ss_pred             HHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCcccccCCCcccccccCC------C
Q psy2130          96 VILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQ------N  169 (470)
Q Consensus        96 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~------~  169 (470)
                      ..+                          ..+...+|.+++.|+...-+.|+.|+..+.+.+.|.||+|+|.+      .
T Consensus       160 k~k--------------------------~t~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~pfg~~~ay  213 (1203)
T KOG4598|consen  160 KWK--------------------------GTEHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVKPFGAIHAY  213 (1203)
T ss_pred             hhc--------------------------CchHHHHHHHHhcchHHHHHHHHHcCccccccceeecccccccCCcchhhh
Confidence            543                          23346789999999999999999999999999999999999986      4


Q ss_pred             CCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchH
Q psy2130         170 TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKP  249 (470)
Q Consensus       170 ~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~  249 (470)
                      -+++++|..|+.||.++|.|+|-|++|+++..+.                                              
T Consensus       214 ~sieeal~afvqpe~ldg~nqy~ce~ck~k~dah----------------------------------------------  247 (1203)
T KOG4598|consen  214 KSVEEALTAFVQPELLDGSNQYMCENCKSKQDAH----------------------------------------------  247 (1203)
T ss_pred             hhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhh----------------------------------------------
Confidence            7899999999999999999999999999999998                                              


Q ss_pred             HHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhh
Q psy2130         250 FRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCM  329 (470)
Q Consensus       250 ~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~  329 (470)
                                                                                                   +-+
T Consensus       248 -----------------------------------------------------------------------------kgl  250 (1203)
T KOG4598|consen  248 -----------------------------------------------------------------------------KGL  250 (1203)
T ss_pred             -----------------------------------------------------------------------------cCc
Confidence                                                                                         899


Q ss_pred             hhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC---------------------------------
Q psy2130         330 KVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA---------------------------------  376 (470)
Q Consensus       330 ~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~---------------------------------  376 (470)
                      +|+.+|-+|+|||+||.|+-......|++.+++||..|||..|....                                 
T Consensus       251 ~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~  330 (1203)
T KOG4598|consen  251 RITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKR  330 (1203)
T ss_pred             eeeccceeeEEeeecccccchheeeeeecccccCcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCccc
Confidence            99999999999999999998877779999999999999987664211                                 


Q ss_pred             ---------------------------------CCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcceee
Q psy2130         377 ---------------------------------VNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDK  421 (470)
Q Consensus       377 ---------------------------------~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~  421 (470)
                                                       ..++..|+|+||.+|.|. +.+|||+||+|+  ++.||+|||.+|.-
T Consensus       331 ~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg~-a~gghy~ayik~~d~~~w~~fnd~~v~~  409 (1203)
T KOG4598|consen  331 CTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSGN-AAGGHYFAYIKNLDQDRWYVFNDTRVDF  409 (1203)
T ss_pred             CcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecCC-CCCceeeeeecccCcCceEEecCccccc
Confidence                                             345677999999999998 999999999995  78999999999999


Q ss_pred             echhhhhhhcCCC-CCCCCCCCcEEEEEEEecCCC
Q psy2130         422 IDQSTIEDFFGLT-SDHQKSSETGYILFYQSRDST  455 (470)
Q Consensus       422 v~~~~v~~~~g~~-~~~~~~~~~aYiLfY~r~~~~  455 (470)
                      +...+|+..||+. ++-...+.+||||+|+|+|.-
T Consensus       410 ~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id~k  444 (1203)
T KOG4598|consen  410 ATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRIDPK  444 (1203)
T ss_pred             cCHHHHHHhhCCCCCCccccCcchhhhhhhhcCcc
Confidence            9999999988874 444456789999999998853

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-42  Score=347.04  Aligned_cols=286  Identities=29%  Similarity=0.479  Sum_probs=238.5

Q ss_pred             CCccccccc-CCchhhhh--hhhccchHH-------------------------HHHhhhcCCccchhhHHHHHHhhccc
Q psy2130          19 NERYFGLVN-GKTCKEKE--DRIEKSQPF-------------------------WEQTSLQDKISLGWECSLILELDLCS   70 (470)
Q Consensus        19 ~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f-------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~   70 (470)
                      .+|+|||+| |.||||||  |+||++..|                         |..+..+.  .+....++.+...|  
T Consensus       190 eTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~grdSValaLQr~Fynlq~~~--~PvdTteltrsfgW--  265 (1089)
T COG5077         190 ETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPRGRDSVALALQRLFYNLQTGE--EPVDTTELTRSFGW--  265 (1089)
T ss_pred             ceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHHHhccC--CCcchHHhhhhcCc--
Confidence            468999999 99999999  999999998                         22222222  33334477777766  


Q ss_pred             CCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccC
Q psy2130          71 SDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCE  150 (470)
Q Consensus        71 ~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~  150 (470)
                       ..+....|||.|||.+.|.|.|+....                          ...-.+.+..+|-|++++-+.|.+-.
T Consensus       266 -ds~dsf~QHDiqEfnrVl~DnLEksmr--------------------------gt~VEnaln~ifVgkmksyikCvnvn  318 (1089)
T COG5077         266 -DSDDSFMQHDIQEFNRVLQDNLEKSMR--------------------------GTVVENALNGIFVGKMKSYIKCVNVN  318 (1089)
T ss_pred             -ccchHHHHHhHHHHHHHHHHHHHHhhc--------------------------CChhhhHHhHHHHHHhhceeeEEEec
Confidence             455666799999999999999998432                          12235568899999999999999999


Q ss_pred             CcccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCccc
Q psy2130         151 TVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVN  230 (470)
Q Consensus       151 ~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N  230 (470)
                      +.|.+.|.||+|.|.+....+|++.++.|.+.|.++|+|.|.|+.-|. +.|.                           
T Consensus       319 yEsarvedfwdiqlNvK~~knLqeSfr~yIqvE~l~GdN~Y~ae~~Gl-qdAk---------------------------  370 (1089)
T COG5077         319 YESARVEDFWDIQLNVKGMKNLQESFRRYIQVETLDGDNRYNAEKHGL-QDAK---------------------------  370 (1089)
T ss_pred             hhhhhHHHHHHHHhcccchhhHHHHHHHhhhheeccCCcccccccccc-hhhc---------------------------
Confidence            999999999999999999999999999999999999999999999665 4444                           


Q ss_pred             CCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCcccc
Q psy2130         231 FGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQ  310 (470)
Q Consensus       231 ~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~Q  310 (470)
                                                                                                      
T Consensus       371 --------------------------------------------------------------------------------  370 (1089)
T COG5077         371 --------------------------------------------------------------------------------  370 (1089)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC----CCCCcceEEE
Q psy2130         311 QDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA----VNPDRMYNLV  386 (470)
Q Consensus       311 qDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~----~~~~~~Y~L~  386 (470)
                                      |-.-+.++|++|.++|+||.++-......|++.+.+||+++|+.+|.+..    .+.+..|.|+
T Consensus       371 ----------------KGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~ksen~d~vY~Ly  434 (1089)
T COG5077         371 ----------------KGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLY  434 (1089)
T ss_pred             ----------------cceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccccCchhhhhcccCcEEEEE
Confidence                            67788999999999999999998888889999999999999999998754    3445899999


Q ss_pred             EEEEeecCCCCCcEEEEEEe--cCCcEEEEeCcceeeechhhh-hhhcCCCCC--CCC-------CCCcEEEEEEEecCC
Q psy2130         387 AVVIHCGSGPNRGHYISIVK--SHDFWLLFDDDVVDKIDQSTI-EDFFGLTSD--HQK-------SSETGYILFYQSRDS  454 (470)
Q Consensus       387 avV~H~G~~~~~GHY~a~vr--~~~~W~~~nD~~V~~v~~~~v-~~~~g~~~~--~~~-------~~~~aYiLfY~r~~~  454 (470)
                      ||++|.|. .+.|||+|++|  .+|.||+|||+.|+++.+.+| ++.||++..  .+.       +.-+||||+|-|++.
T Consensus       435 gVlVHsGD-l~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~  513 (1089)
T COG5077         435 GVLVHSGD-LHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSM  513 (1089)
T ss_pred             EEEEeccc-cCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhH
Confidence            99999998 99999999999  579999999999999998877 568887511  111       234679999999987


Q ss_pred             CccccC
Q psy2130         455 TDARTM  460 (470)
Q Consensus       455 ~~~~~~  460 (470)
                      .+.-..
T Consensus       514 ~ddLln  519 (1089)
T COG5077         514 LDDLLN  519 (1089)
T ss_pred             HHhhhC
Confidence            766544

>KOG1867|consensus

Probab=100.00  E-value=3.4e-41  Score=340.59  Aligned_cols=283  Identities=31%  Similarity=0.514  Sum_probs=235.2

Q ss_pred             Cccccccc-CCchhhhh--hhhccchHH----------------------------HHHhhhcCCccchhhHHHHHHhhc
Q psy2130          20 ERYFGLVN-GKTCKEKE--DRIEKSQPF----------------------------WEQTSLQDKISLGWECSLILELDL   68 (470)
Q Consensus        20 ~~~~GL~N-GNtCy~Ns--Q~L~~~~~f----------------------------~~~~~~~~~~~~~~~~~~~~~l~~   68 (470)
                      .++.||+| |+|||||+  |+|.+.+..                            +..+....+.....+..++..+| 
T Consensus       159 ~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~~-  237 (492)
T KOG1867|consen  159 LGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLVW-  237 (492)
T ss_pred             ecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHHH-
Confidence            46789999 99999999  999866555                            22222222123344447777777 


Q ss_pred             ccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccc
Q psy2130          69 CSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLN  148 (470)
Q Consensus        69 ~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~  148 (470)
                      +..+.+.+++|||||||+..+++.+|.+....++..     .          .........+++...|.|++.+.++|..
T Consensus       238 k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~-----~----------~~~~~~~c~~iv~~~F~G~L~~~v~c~~  302 (492)
T KOG1867|consen  238 KHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSL-----I----------ASQSNKQCPCIVHTIFSGTLQSDVTCQT  302 (492)
T ss_pred             HhCcccccccccchHHHHHHhccccccccccccccc-----c----------cccCCcccccccceeecceeccceeehh
Confidence            889999999999999999999999999871111110     0          0011125688999999999999999999


Q ss_pred             cCCcccccCCCcccccccCCC----------CCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCC
Q psy2130         149 CETVSSKDEDFFDLQVDIKQN----------TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDR  218 (470)
Q Consensus       149 C~~~s~~~~~f~~Lsl~i~~~----------~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~  218 (470)
                      |+..|.+.++|++|+|+||..          .++.+|+..|...|.......++|..|+.+....               
T Consensus       303 c~~~S~~~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~---------------  367 (492)
T KOG1867|consen  303 CGSKSTTYDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQEST---------------  367 (492)
T ss_pred             hcceeeeccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccc---------------
Confidence            999999999999999999852          6799999999999988778899999999998888               


Q ss_pred             CCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHH
Q psy2130         219 FPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRL  298 (470)
Q Consensus       219 ~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l  298 (470)
                                                                                                      
T Consensus       368 --------------------------------------------------------------------------------  367 (492)
T KOG1867|consen  368 --------------------------------------------------------------------------------  367 (492)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCC---
Q psy2130         299 RKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDD---  375 (470)
Q Consensus       299 ~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~---  375 (470)
                                                  ++..+.++|.++.++++||.+....... |+...|.||..+++.+++..   
T Consensus       368 ----------------------------kql~~~~lP~~l~~~lkRfe~~~~~~~~-ki~~~v~fp~~l~m~p~~~~~~~  418 (492)
T KOG1867|consen  368 ----------------------------KQLTIRKLPAVLCLHLKRFEHSATGARE-KIDSYVSFPVLLNMKPYCSSEKL  418 (492)
T ss_pred             ----------------------------cccccccCCceeeeeecccccccccccc-ccCcccccchhhcCCcccccccc
Confidence                                        9999999999999999999998765543 99999999999999987653   


Q ss_pred             --CCCCCcceEEEEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEecC
Q psy2130         376 --AVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRD  453 (470)
Q Consensus       376 --~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~~  453 (470)
                        ...++..|+|.|||+|+|. .++|||+||+|..+.|++|||+.|+.+++++|            .+..||+|||.+..
T Consensus       419 ~~~~~~~~~Y~L~AVV~H~G~-~~SGHY~aY~r~~~~~~~~dDs~v~~~s~~eV------------l~~~aylLFY~~~~  485 (492)
T KOG1867|consen  419 KSQDNPDHLYELRAVVVHHGT-VGSGHYVAYRRQSGGWFKCDDSTVTKVSEEEV------------LSSQAYLLFYTQEQ  485 (492)
T ss_pred             ccCCCCCceEEEEEEEEeccC-CCCCceEEEEEeCCCcEEEcCeEEEEeeHHHh------------hhchhhheehhHHh
Confidence              2235689999999999999 99999999999999999999999999999999            58899999998866


Q ss_pred             CC
Q psy2130         454 ST  455 (470)
Q Consensus       454 ~~  455 (470)
                      ..
T Consensus       486 ~~  487 (492)
T KOG1867|consen  486 VE  487 (492)
T ss_pred             hh
Confidence            54

>KOG1873|consensus

Probab=100.00  E-value=2.2e-41  Score=338.49  Aligned_cols=112  Identities=29%  Similarity=0.478  Sum_probs=96.9

Q ss_pred             hhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC-----CCCCcceEEEEEEEeecCCCCCcEE
Q psy2130         327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA-----VNPDRMYNLVAVVIHCGSGPNRGHY  401 (470)
Q Consensus       327 ~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~-----~~~~~~Y~L~avV~H~G~~~~~GHY  401 (470)
                      ++..|...|+||+||++||..+.. ++..|.+.++.|++.+|+..+++..     ......|+|.|+|.|.|. ++.|||
T Consensus       739 k~~li~~aPpVltihlKrf~q~~~-~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgt-m~~ghy  816 (877)
T KOG1873|consen  739 KKVLINKAPPVLTIHLKRFFQDIR-GRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGT-MSYGHY  816 (877)
T ss_pred             eeeecccCCceeeehHhhhhhhhh-chhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceecccc-ccCCcc
Confidence            677888999999999999987643 4478999999999999988776432     124468999999999998 999999


Q ss_pred             EEEEec----------------------CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEec
Q psy2130         402 ISIVKS----------------------HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSR  452 (470)
Q Consensus       402 ~a~vr~----------------------~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~  452 (470)
                      |+|+|.                      .++||.+.|+.|++|++++|            .+.+||||||+|.
T Consensus       817 vayv~~~t~~~~~~~~~~~~~~sd~~~~~~~Wy~iSDs~VrevS~d~v------------LkseAYlLFYERI  877 (877)
T KOG1873|consen  817 VAYVRGGTFLDLSAPSNSKDFESDAGIPSGRWYYISDSIVREVSLDEV------------LKSEAYLLFYERI  877 (877)
T ss_pred             hhhhhccchhhccCccccccchhccCCCCcceEEecchheecccHHHH------------hhhhhhhhheecC
Confidence            999984                      36899999999999999999            5889999999995

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases

Probab=100.00  E-value=3.2e-39  Score=305.56  Aligned_cols=238  Identities=37%  Similarity=0.627  Sum_probs=198.8

Q ss_pred             cccc-CCchhhhh--hhhccchHHHHHhhhcCCccchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhc
Q psy2130          24 GLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSE  100 (470)
Q Consensus        24 GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~  100 (470)
                      ||.| |||||+||  |+|++                                     .||||+||+..+|+.|+.++...
T Consensus         1 Gl~N~~n~Cy~ns~lq~l~~-------------------------------------~q~Da~E~l~~ll~~l~~~~~~~   43 (255)
T cd02257           1 GLNNLGNTCYLNSVLQALFS-------------------------------------EQQDAHEFLLFLLDKLHEELKKS   43 (255)
T ss_pred             CccccCcchHHhHHHHHHHH-------------------------------------HHHHHHHHHHHHHHHHHHHHHhh
Confidence            8999 99999999  99987                                     69999999999999999998754


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCcccccCCCcccccccCC----CCCHHHHh
Q psy2130         101 RPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQ----NTSITQCL  176 (470)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~----~~sl~~~L  176 (470)
                      ...                  ........+.+.++|+|.+..+++|..|+..+.....+..++|++|.    ..+|+++|
T Consensus        44 ~~~------------------~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~~~~~l~~~l  105 (255)
T cd02257          44 SKR------------------TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGLPQVSLEDCL  105 (255)
T ss_pred             ccc------------------ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCCCCCcHHHHH
Confidence            322                  11123345689999999999999999999888887788888888886    48999999


Q ss_pred             ccCCccccccCCCccccCCcc--ccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHH
Q psy2130         177 RGFSSTETLCSDNKFKCDNCA--SYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRV  254 (470)
Q Consensus       177 ~~~~~~e~l~~~~~~~C~~C~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i  254 (470)
                      +.++.+|.+   ....|..|+  ......                                                   
T Consensus       106 ~~~~~~e~~---~~~~~~~c~~~~~~~~~---------------------------------------------------  131 (255)
T cd02257         106 EKFFKEEIL---EGDNCYKCEKKKKQEAT---------------------------------------------------  131 (255)
T ss_pred             HHhhhhhcc---CCCCcccCCCCccccee---------------------------------------------------
Confidence            999999887   567888887  344444                                                   


Q ss_pred             hccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCC
Q psy2130         255 LEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKL  334 (470)
Q Consensus       255 ~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~l  334 (470)
                                                                                              ++..+.++
T Consensus       132 ------------------------------------------------------------------------~~~~i~~l  139 (255)
T cd02257         132 ------------------------------------------------------------------------KRLKIKKL  139 (255)
T ss_pred             ------------------------------------------------------------------------EEEecccC
Confidence                                                                                    67788999


Q ss_pred             CceEEEEeeeeeeeccccccccccceEecCcccccccCCC------CCCCCCcceEEEEEEEeecCCCCCcEEEEEEecC
Q psy2130         335 PMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSD------DAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSH  408 (470)
Q Consensus       335 P~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~------~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~  408 (470)
                      |++|+|+++||.++.. ....|+...|.+|..+++..+..      ........|+|+|||+|.|.+..+|||++|+|..
T Consensus       140 P~~L~i~l~R~~~~~~-~~~~k~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~  218 (255)
T cd02257         140 PPVLIIHLKRFSFNED-GTKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDP  218 (255)
T ss_pred             CceeEEEeeceeeccc-cccccCCCeEeCCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCC
Confidence            9999999999998753 34479999999999999877653      2344668999999999999966999999999976


Q ss_pred             --CcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130         409 --DFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ  450 (470)
Q Consensus       409 --~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~  450 (470)
                        ++|++|||..|++++++++....       ..+.+||+|||+
T Consensus       219 ~~~~W~~~nD~~V~~v~~~~~~~~~-------~~~~~~yll~Y~  255 (255)
T cd02257         219 SDGKWYKFNDDKVTEVSEEEVLEFG-------SLSSSAYILFYE  255 (255)
T ss_pred             CCCceEEEeccccEEcCHHHhhhcc-------CCCCceEEEEEC
Confidence              89999999999999998885432       147899999995

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=1.9e-38  Score=303.80  Aligned_cols=215  Identities=38%  Similarity=0.667  Sum_probs=180.9

Q ss_pred             ccCcccCCCcchhHHHHHHHhhchHHHHHHhccc-------cccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHH
Q psy2130         225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYK-------AKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITR  297 (470)
Q Consensus       225 ~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~-------~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~  297 (470)
                      ++||.|.|||||+||+||+|+++|+|++.+....       .........+...++.++..++........+.|..++.+
T Consensus         1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~   80 (269)
T PF00443_consen    1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA   80 (269)
T ss_dssp             --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred             CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence            5899999999999999999999999999999761       122334567999999999999999777889999999999


Q ss_pred             HhhccCcCCccccccHHHHHHHHHHHHHh-----------------------------------------hhhhhcCCCc
Q psy2130         298 LRKEKDEFDNYMQQDAHEFLNFLINHINE-----------------------------------------KCMKVKKLPM  336 (470)
Q Consensus       298 l~~~~~~~~~~~QqDa~E~~~~ll~~L~~-----------------------------------------~~~~i~~lP~  336 (470)
                      +....+.|..+.|+||+||+..|++.|++                                         ....+.++|+
T Consensus        81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~~~~~~~~P~  160 (269)
T PF00443_consen   81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNSQSSISSLPP  160 (269)
T ss_dssp             HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCEEEEEEEBBS
T ss_pred             ccccccccccccccchhhhhcccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99988889999999999999999999988                                         1345788999


Q ss_pred             eEEEEeeeeeeeccccccccccceEecC-cccccccCCCCCCC---CCcceEEEEEEEeecCCCCCcEEEEEEecCC--c
Q psy2130         337 ILALHLKRFKYMDKMNRHVKVSHRVVFP-LELRLFHLSDDAVN---PDRMYNLVAVVIHCGSGPNRGHYISIVKSHD--F  410 (470)
Q Consensus       337 ~L~i~l~R~~~~~~~~~~~K~~~~v~fp-~~ldl~~~~~~~~~---~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~~--~  410 (470)
                      +|+|+++||.++...+...|+...|.|| .+||+.++......   ....|+|+|||+|+| ...+|||+||+|+.+  +
T Consensus       161 ~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~a~v~~~~~~~  239 (269)
T PF00443_consen  161 ILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYG-SADSGHYVAYVRDSDDGK  239 (269)
T ss_dssp             EEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEES-STTSEEEEEEEEETTTTE
T ss_pred             eeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhhhcccc-ccccceEEEeeccccCCe
Confidence            9999999998887666678999999999 69999988766443   368999999999999 599999999998653  6


Q ss_pred             EEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEE
Q psy2130         411 WLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFY  449 (470)
Q Consensus       411 W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY  449 (470)
                      |++|||+.|+++++++|.+.         ...+||||||
T Consensus       240 W~~~dD~~v~~~~~~~v~~~---------~~~~~yll~Y  269 (269)
T PF00443_consen  240 WYKFDDSRVTEVSWEEVIKS---------SNSTAYLLFY  269 (269)
T ss_dssp             EEEEETTEEEEESHHHHCCG---------GSTCEEEEEE
T ss_pred             EEEeeCCceEECCHHHHhhc---------cCCceEEEeC
Confidence            99999999999999888321         2489999999

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....

>KOG1870|consensus

Probab=100.00  E-value=2.5e-39  Score=349.59  Aligned_cols=296  Identities=30%  Similarity=0.487  Sum_probs=245.2

Q ss_pred             CCCCCccccccc-CCchhhhh--hhhccchHHHHHh--------------------------------hhcCCccchhhH
Q psy2130          16 FPPNERYFGLVN-GKTCKEKE--DRIEKSQPFWEQT--------------------------------SLQDKISLGWEC   60 (470)
Q Consensus        16 ~~~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~--------------------------------~~~~~~~~~~~~   60 (470)
                      .+...+.+||.| ||||||||  |||.+.++++...                                ..... ....+.
T Consensus       240 ~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~-~~v~~~  318 (842)
T KOG1870|consen  240 SPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNK-SAVAPT  318 (842)
T ss_pred             CCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCc-cccCch
Confidence            456678999999 99999999  9999999981111                                11111 112222


Q ss_pred             HHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCccccc---CCCCCCCCCCCCCCCCCCCCchHHHHhhc
Q psy2130          61 SLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKS---KLSAPDGGGGDNHSSSGFEEPTWVHEIFQ  137 (470)
Q Consensus        61 ~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~i~~~F~  137 (470)
                      .+...+. ...++|.|+.|||.+||+.+|+|.||++++...+++....   ............|......+.++|.++|.
T Consensus       319 ~~~~~~~-~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~  397 (842)
T KOG1870|consen  319 SFRTSLA-SFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFD  397 (842)
T ss_pred             hhhhhhh-hccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeec
Confidence            4444444 6778899999999999999999999999987766622111   11111223344577778888899999999


Q ss_pred             cccccceeccccCCcccccCCCcccccccC--------------------------------------------------
Q psy2130         138 GILTSETKCLNCETVSSKDEDFFDLQVDIK--------------------------------------------------  167 (470)
Q Consensus       138 g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~--------------------------------------------------  167 (470)
                      |++++.++|+.|+.+++++++|..|+||+|                                                  
T Consensus       398 ~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  477 (842)
T KOG1870|consen  398 GTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWE  477 (842)
T ss_pred             ceecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhh
Confidence            999999999999999999999999999999                                                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy2130         168 --------------------------------------------------------------------------------  167 (470)
Q Consensus       168 --------------------------------------------------------------------------------  167 (470)
                                                                                                      
T Consensus       478 l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~  557 (842)
T KOG1870|consen  478 LKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSV  557 (842)
T ss_pred             cccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeec
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy2130         168 --------------------------------------------------------------------------------  167 (470)
Q Consensus       168 --------------------------------------------------------------------------------  167 (470)
                                                                                                      
T Consensus       558 ~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  637 (842)
T KOG1870|consen  558 LSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRF  637 (842)
T ss_pred             cCCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCcccccc
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------CCCCHHHHhccCCccccccCCCcc
Q psy2130         168 --------------------------------------------------------QNTSITQCLRGFSSTETLCSDNKF  191 (470)
Q Consensus       168 --------------------------------------------------------~~~sl~~~L~~~~~~e~l~~~~~~  191 (470)
                                                                              ...+|++||..|+.+|.|..++.|
T Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w  717 (842)
T KOG1870|consen  638 FQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRW  717 (842)
T ss_pred             cccccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccccc
Confidence                                                                    157999999999999999999999


Q ss_pred             ccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHH
Q psy2130         192 KCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSC  271 (470)
Q Consensus       192 ~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~  271 (470)
                      .|+.|.....|.                                                                    
T Consensus       718 ~C~~Cke~~~A~--------------------------------------------------------------------  729 (842)
T KOG1870|consen  718 YCPQCKELRQAT--------------------------------------------------------------------  729 (842)
T ss_pred             cChHHHHHHHHh--------------------------------------------------------------------
Confidence            999999999888                                                                    


Q ss_pred             HHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccc
Q psy2130         272 LADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKM  351 (470)
Q Consensus       272 l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~  351 (470)
                                                                             |+..++++|++|+|||+||.+.+..
T Consensus       730 -------------------------------------------------------Kk~~lwrlPeiLiihLKrF~~~r~~  754 (842)
T KOG1870|consen  730 -------------------------------------------------------KKLDLWRLPEILIIHLKRFQYSRES  754 (842)
T ss_pred             -------------------------------------------------------hhhhhhhCCceEEEEeecceeechh
Confidence                                                                   9999999999999999999998744


Q ss_pred             cccccccceEecCc-ccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhh
Q psy2130         352 NRHVKVSHRVVFPL-ELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIE  428 (470)
Q Consensus       352 ~~~~K~~~~v~fp~-~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~  428 (470)
                        ..|+...|+||. .||+++++.....  ..|+|+||++|+|. +.+|||+||.|.  +++||.|||+.|.++++++| 
T Consensus       755 --~~k~~~~v~fPi~~ld~s~~~~~~~~--~~Y~l~av~nHyG~-l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i-  828 (842)
T KOG1870|consen  755 --SSKVKTKVEFPLGSLDLSEFVVNKEQ--VLYDLYAVGNHYGQ-LSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEI-  828 (842)
T ss_pred             --hhhhCccccCCCcCCCcchhhccCcc--ceeeeeeeecccCC-cCCcchhhhhhcCCCCceEEeccccCCCCChhhc-
Confidence              389999999998 6888888765432  89999999999999 999999999996  58999999999999999888 


Q ss_pred             hhcCCCCCCCCCCCcEEEEEEEecC
Q psy2130         429 DFFGLTSDHQKSSETGYILFYQSRD  453 (470)
Q Consensus       429 ~~~g~~~~~~~~~~~aYiLfY~r~~  453 (470)
                                 .+..||+|||+|++
T Consensus       829 -----------~t~~aY~Lfy~r~~  842 (842)
T KOG1870|consen  829 -----------DTEAAYVLFYRRLD  842 (842)
T ss_pred             -----------ccccceEEEEEecC
Confidence                       48999999999975

>cd02666 Peptidase_C19J A subfamily of Peptidase C19

Probab=100.00  E-value=1.9e-38  Score=310.47  Aligned_cols=150  Identities=18%  Similarity=0.214  Sum_probs=104.2

Q ss_pred             cccccc-CCchhhhh--hhhccchHHHHHhhhcCC-----------------ccc------------hhhHHHHHHhhcc
Q psy2130          22 YFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDK-----------------ISL------------GWECSLILELDLC   69 (470)
Q Consensus        22 ~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~-----------------~~~------------~~~~~~~~~l~~~   69 (470)
                      |+||.| ||||||||  |+|+++|+|...+..-..                 ...            .....++..|...
T Consensus         1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s   80 (343)
T cd02666           1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS   80 (343)
T ss_pred             CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence            689999 99999999  999999999444332110                 000            0011333333311


Q ss_pred             cCCCC--------CCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccc
Q psy2130          70 SSDEF--------DNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILT  141 (470)
Q Consensus        70 ~~~~f--------~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~  141 (470)
                      ..+..        ....||||+||+..||+.|++++.........      +       .........++|.++|+|++.
T Consensus        81 ~~~~v~P~~~l~~l~~~QQDa~Ef~~~lld~Le~~lk~~~~~~~~------~-------~~~~~~~~~~~I~~lF~G~~~  147 (343)
T cd02666          81 NTRSVTPSKELAYLALRQQDVTECIDNVLFQLEVALEPISNAFAG------P-------DTEDDKEQSDLIKRLFSGKTK  147 (343)
T ss_pred             CCCccCcHHHHHhccccccchHHHHHHHHHHHHHHhcCccccccC------c-------ccccccchhhhhhHhceeeEE
Confidence            11111        12279999999999999999998643211100      0       001123457899999999999


Q ss_pred             cceeccccC---CcccccCCCcccccccCC----------CCCHHHHhccCCcccc
Q psy2130         142 SETKCLNCE---TVSSKDEDFFDLQVDIKQ----------NTSITQCLRGFSSTET  184 (470)
Q Consensus       142 ~~~~C~~C~---~~s~~~~~f~~Lsl~i~~----------~~sl~~~L~~~~~~e~  184 (470)
                      +.++|..|+   ..+.+.|+|++|+|+|+.          ..+|.+||+.|+..|.
T Consensus       148 ~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~  203 (343)
T cd02666         148 QQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS  203 (343)
T ss_pred             EEEEecccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh
Confidence            999999997   789999999999999985          6889999988887665

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1864|consensus

Probab=100.00  E-value=2.9e-37  Score=316.63  Aligned_cols=307  Identities=48%  Similarity=0.770  Sum_probs=247.4

Q ss_pred             hhhhhHhhCCCCCC--CCCccccccc-CCchhhh--h--hhhccchHH----------------------------HHHh
Q psy2130           4 ISALEKEIGPDRFP--PNERYFGLVN-GKTCKEK--E--DRIEKSQPF----------------------------WEQT   48 (470)
Q Consensus         4 ~~~~~~~~~~~~~~--~~~~~~GL~N-GNtCy~N--s--Q~L~~~~~f----------------------------~~~~   48 (470)
                      .+.+.++.++....  .+.+.-|..| +++|+.|  +  |.++.+.++                            +...
T Consensus       212 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  291 (587)
T KOG1864|consen  212 SSELLKEKGPTFSYSNANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSI  291 (587)
T ss_pred             ccccccccCCccccccccccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccch
Confidence            34555666655554  4678899999 9999999  4  777777665                            1111


Q ss_pred             hhcCCccchh-hHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCC----CCCCC--
Q psy2130          49 SLQDKISLGW-ECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGG----GGDNH--  121 (470)
Q Consensus        49 ~~~~~~~~~~-~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~----~~~~~--  121 (470)
                      ..++...... +..++..++ +....|..+.|||||||+.++++.++|-+................++.    +..++  
T Consensus       292 ~~~~~~~~~i~p~~~~~~~~-~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~  370 (587)
T KOG1864|consen  292 SSRKKLVGRISPTRFISDLI-KENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNK  370 (587)
T ss_pred             hhhcccccccCcchhhhhhh-hcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCcccccccccccc
Confidence            2222211121 227777777 888999999999999999999999999877655333222111001111    11111  


Q ss_pred             CCCCCCCchHHHHhhccccccceeccccCCcccccCCCcccccccC--CCCCHHHHhccCCccccccCCCccccCCcccc
Q psy2130         122 SSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIK--QNTSITQCLRGFSSTETLCSDNKFKCDNCASY  199 (470)
Q Consensus       122 ~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~--~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~  199 (470)
                      ........+++.++|.|++..+..|..|++++.+.+.|.|++++++  +..++..||+.|..+|.+.|++.|.|+.|..+
T Consensus       371 ~~~~~~~~~~v~~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~  450 (587)
T KOG1864|consen  371 GHHKSLRENWVSKLFQGILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSL  450 (587)
T ss_pred             ccccccchhHHHHhhcCeeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCch
Confidence            1334557789999999999999999999999999999999999999  79999999999999999999999999999999


Q ss_pred             ccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHH
Q psy2130         200 QEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNI  279 (470)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l  279 (470)
                      +.+.                                                                            
T Consensus       451 qeae----------------------------------------------------------------------------  454 (587)
T KOG1864|consen  451 QEAE----------------------------------------------------------------------------  454 (587)
T ss_pred             hhHH----------------------------------------------------------------------------
Confidence            9998                                                                            


Q ss_pred             HhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccc
Q psy2130         280 ATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSH  359 (470)
Q Consensus       280 ~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~  359 (470)
                                                                     +.+.++++|.+|+|||+||.+........|+..
T Consensus       455 -----------------------------------------------~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~  487 (587)
T KOG1864|consen  455 -----------------------------------------------RRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLY  487 (587)
T ss_pred             -----------------------------------------------HhccccCCcceeeeehhcccccccccccccccc
Confidence                                                           899999999999999999999876677799999


Q ss_pred             eEecCcccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEecCCc-EEEEeCcceeeechhhhhhhcCCC
Q psy2130         360 RVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDF-WLLFDDDVVDKIDQSTIEDFFGLT  434 (470)
Q Consensus       360 ~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~~~-W~~~nD~~V~~v~~~~v~~~~g~~  434 (470)
                      +|.+|..+.+.....++..+...|.|+|||||.|.+.+.|||+||+|..+. |++|||..|+.++.++|.+..|.+
T Consensus       488 ~v~~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~~nWl~fdD~~V~~~s~~~v~~~~~~s  563 (587)
T KOG1864|consen  488 RVVFPLELRLKDTLKDDNNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSLDFNWLLFDDDNVEPISEEPVSEFTGSS  563 (587)
T ss_pred             ccccccceeeccccccccCccceeeEEEEEEeccCCCCCcceEEEEeeCCCCceecccccccccCcchhhhccCCC
Confidence            999999999987777766667899999999999999999999999998876 999999999999999998887654

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-36  Score=290.72  Aligned_cols=150  Identities=23%  Similarity=0.375  Sum_probs=120.7

Q ss_pred             cccccc-CCchhhhh--hhhccchHH----------------------H---HHhhh-cCC-----ccchhhH-HHHHHh
Q psy2130          22 YFGLVN-GKTCKEKE--DRIEKSQPF----------------------W---EQTSL-QDK-----ISLGWEC-SLILEL   66 (470)
Q Consensus        22 ~~GL~N-GNtCy~Ns--Q~L~~~~~f----------------------~---~~~~~-~~~-----~~~~~~~-~~~~~l   66 (470)
                      ++||.| ||+||+||  |+|+....+                      +   ..+.. ++.     +..+..+ .|.+.+
T Consensus       303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~i  382 (749)
T COG5207         303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLI  382 (749)
T ss_pred             ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHH
Confidence            899999 99999999  999887665                      1   11111 111     1223333 666666


Q ss_pred             hcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceec
Q psy2130          67 DLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKC  146 (470)
Q Consensus        67 ~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C  146 (470)
                      + ..++.|...+||||||||++||+.|.+-..                           .-..+.|.++|...+..++.|
T Consensus       383 g-q~h~eFg~~~QQDA~EFLlfLL~kirk~~~---------------------------S~~~~~It~lf~Fe~e~rlsC  434 (749)
T COG5207         383 G-QDHPEFGKFAQQDAHEFLLFLLEKIRKGER---------------------------SYLIPPITSLFEFEVERRLSC  434 (749)
T ss_pred             c-CCchhhhhhhhhhHHHHHHHHHHHHhhccc---------------------------hhcCCCcchhhhhhhcceecc
Confidence            6 999999999999999999999999987321                           112334779999999999999


Q ss_pred             cccCCcccccCCCcccccccCCC---CCHHHHhccCCccccccCCCccccCCcccccccc
Q psy2130         147 LNCETVSSKDEDFFDLQVDIKQN---TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQ  203 (470)
Q Consensus       147 ~~C~~~s~~~~~f~~Lsl~i~~~---~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~  203 (470)
                      ..|+.+++++++...+.+++.++   .++.+|++.|+.+..+    +|.|+.|+.+..+.
T Consensus       435 ~~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdti----E~~CenCk~K~~a~  490 (749)
T COG5207         435 SGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTI----EWSCENCKGKKKAS  490 (749)
T ss_pred             cccccccccccceEEEEeecccCcchhhHHHHHHheECccce----eeehhhhcCccccc
Confidence            99999999999999999998874   7889999999999996    69999999998888

>cd02672 Peptidase_C19P A subfamily of Peptidase C19

Probab=100.00  E-value=2.8e-36  Score=286.38  Aligned_cols=175  Identities=21%  Similarity=0.301  Sum_probs=146.4

Q ss_pred             HHHhhccccccceecc------ccCCcccccCCCcccccccCC-----CCCHHHHhccCCccccccCCCccccCCccccc
Q psy2130         132 VHEIFQGILTSETKCL------NCETVSSKDEDFFDLQVDIKQ-----NTSITQCLRGFSSTETLCSDNKFKCDNCASYQ  200 (470)
Q Consensus       132 i~~~F~g~~~~~~~C~------~C~~~s~~~~~f~~Lsl~i~~-----~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~  200 (470)
                      +.+.|.|.+.+++.|.      .|++++.+.++|.+|+|++|.     ..++++||+.|+.+|..   +++.|+.|+.+.
T Consensus        68 ~iq~F~~fll~~i~~~~~~~~~~C~~~s~~~~~~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~---~~~~C~~C~~~~  144 (268)
T cd02672          68 LIQNFTRFLLETISQDQLGTPFSCGTSRNSVSLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKV---TKAWCDTCCKYQ  144 (268)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCceeeccccceeeeeecCccccccCCCHHHHHHHHhhhhhc---ccccccccCccc
Confidence            3355666666666665      899999999999999999994     57999999999999875   789999999998


Q ss_pred             cccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHH
Q psy2130         201 EAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIA  280 (470)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~  280 (470)
                      .+.                                                                             
T Consensus       145 ~a~-----------------------------------------------------------------------------  147 (268)
T cd02672         145 PLE-----------------------------------------------------------------------------  147 (268)
T ss_pred             ccE-----------------------------------------------------------------------------
Confidence            888                                                                             


Q ss_pred             hCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCc----eEEEEeeeeeeeccc-----
Q psy2130         281 THKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPM----ILALHLKRFKYMDKM-----  351 (470)
Q Consensus       281 ~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~----~L~i~l~R~~~~~~~-----  351 (470)
                                                                    ++..|.++|+    +|+|+++||......     
T Consensus       148 ----------------------------------------------k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~  181 (268)
T cd02672         148 ----------------------------------------------QTTSIRHLPDILLLVLVINLSVTNGEFDDINVVL  181 (268)
T ss_pred             ----------------------------------------------EEEEeecCCCcccceEEEEEeccChhhcccCcce
Confidence                                                          9999999999    999999999864321     


Q ss_pred             cccccccceEecCcccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEec------CCcEEEEeCcceeeechh
Q psy2130         352 NRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS------HDFWLLFDDDVVDKIDQS  425 (470)
Q Consensus       352 ~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~------~~~W~~~nD~~V~~v~~~  425 (470)
                      ....|+...|.||+.+++......+......|+|+|||+|.|.+..+|||+|++|.      .++||+|||..|++|++ 
T Consensus       182 ~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~-  260 (268)
T cd02672         182 PSGKVMQNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE-  260 (268)
T ss_pred             eEEEecCCeecccccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc-
Confidence            12357778999998877665555555566899999999999986699999999997      57899999999999754 


Q ss_pred             hhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130         426 TIEDFFGLTSDHQKSSETGYILFYQ  450 (470)
Q Consensus       426 ~v~~~~g~~~~~~~~~~~aYiLfY~  450 (470)
                                       .||||||+
T Consensus       261 -----------------~aYiLfY~  268 (268)
T cd02672         261 -----------------LAYILLYQ  268 (268)
T ss_pred             -----------------hheeeecC
Confidence                             79999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1863|consensus

Probab=100.00  E-value=1.8e-34  Score=319.28  Aligned_cols=286  Identities=25%  Similarity=0.442  Sum_probs=236.3

Q ss_pred             Ccc-ccccc-CCchhhhh--hhhccchHH---------------------------HHHhhhcCCccchhhHHHHHHhhc
Q psy2130          20 ERY-FGLVN-GKTCKEKE--DRIEKSQPF---------------------------WEQTSLQDKISLGWECSLILELDL   68 (470)
Q Consensus        20 ~~~-~GL~N-GNtCy~Ns--Q~L~~~~~f---------------------------~~~~~~~~~~~~~~~~~~~~~l~~   68 (470)
                      .+. +||.| ||||||||  |+||+++.|                           |..+..++. +.....++++.+.|
T Consensus       167 tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~-k~Vdt~~~~~~~~~  245 (1093)
T KOG1863|consen  167 TGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKR-KYVDTSELTKSLGW  245 (1093)
T ss_pred             CCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCC-CCcCchhhhhhhhc
Confidence            344 99999 99999999  999999999                           333444443 45555577777775


Q ss_pred             ccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccc
Q psy2130          69 CSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLN  148 (470)
Q Consensus        69 ~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~  148 (470)
                      ..   .....|||++||++.|+|.|++.+....                          ....|.++|.|.+.+.+.|..
T Consensus       246 ~~---~~~~~QqDvqEf~~~l~d~LE~~~~~~~--------------------------~~~~l~~lf~g~~~~~i~c~~  296 (1093)
T KOG1863|consen  246 DS---NDSFEQQDVQEFLTKLLDWLEDSMIDAK--------------------------VENTLQDLFTGKMKSVIKCID  296 (1093)
T ss_pred             cc---ccHHhhhhHHHHHHHHHHHHHhhccchh--------------------------hhhhhhhhhcCCcceEEEEEe
Confidence            33   4567899999999999999999764221                          255688999999999999999


Q ss_pred             cCCcccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCc
Q psy2130         149 CETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGL  228 (470)
Q Consensus       149 C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL  228 (470)
                      |+..+.+.+.|+++.|++....++.++|..|+..|.++|+++ .|..|...+.+.                         
T Consensus       297 ~~~~s~r~e~f~d~ql~~~g~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~-------------------------  350 (1093)
T KOG1863|consen  297 VDFESSRSESFLDLQLNGKGVKNLEDSLHLYFEAEILLGDNK-YDAECHGLQDAK-------------------------  350 (1093)
T ss_pred             eeeeccccccccCccccccchhhHHHHHHHhhhHHHhcCCcc-ccccccchhhhh-------------------------
Confidence            999999999999999999999999999999999999999998 889998888887                         


Q ss_pred             ccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCcc
Q psy2130         229 VNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNY  308 (470)
Q Consensus       229 ~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~  308 (470)
                                                                                                      
T Consensus       351 --------------------------------------------------------------------------------  350 (1093)
T KOG1863|consen  351 --------------------------------------------------------------------------------  350 (1093)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCC----CCCCCcceE
Q psy2130         309 MQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDD----AVNPDRMYN  384 (470)
Q Consensus       309 ~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~----~~~~~~~Y~  384 (470)
                                        +...+..+|++|.|+|+||.++...+...|+....+||..|++.++...    .......|+
T Consensus       351 ------------------k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~  412 (1093)
T KOG1863|consen  351 ------------------KGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSRFKAEESERSAVYS  412 (1093)
T ss_pred             ------------------cceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchhccccchhhhhccceec
Confidence                              7788899999999999999999888888999999999999999888652    122225999


Q ss_pred             EEEEEEeecCCCCCcEEEEEEe--cCCcEEEEeCcceeeechhhh-hhhcCCCCCCC---CCCCcEEEEEEEecCCCccc
Q psy2130         385 LVAVVIHCGSGPNRGHYISIVK--SHDFWLLFDDDVVDKIDQSTI-EDFFGLTSDHQ---KSSETGYILFYQSRDSTDAR  458 (470)
Q Consensus       385 L~avV~H~G~~~~~GHY~a~vr--~~~~W~~~nD~~V~~v~~~~v-~~~~g~~~~~~---~~~~~aYiLfY~r~~~~~~~  458 (470)
                      |+||.+|.|. .++|||++|++  ..++|++|||..|..++..++ +..+|+.....   .....||+|+|.|++..+..
T Consensus       413 l~~v~vh~g~-~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~~~~~  491 (1093)
T KOG1863|consen  413 LHAVLVHSGD-AHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSCESKI  491 (1093)
T ss_pred             cchhhccccc-ccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCcHHhh
Confidence            9999999776 99999999999  468999999999999986655 45777643210   11223899999999877655


Q ss_pred             cC
Q psy2130         459 TM  460 (470)
Q Consensus       459 ~~  460 (470)
                      ..
T Consensus       492 ~~  493 (1093)
T KOG1863|consen  492 LK  493 (1093)
T ss_pred             hc
Confidence            43

>cd02670 Peptidase_C19N A subfamily of Peptidase C19

Probab=99.97  E-value=2.7e-31  Score=246.17  Aligned_cols=111  Identities=25%  Similarity=0.424  Sum_probs=89.5

Q ss_pred             cCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC----------------------CCCCcceEEEEEE
Q psy2130         332 KKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA----------------------VNPDRMYNLVAVV  389 (470)
Q Consensus       332 ~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~----------------------~~~~~~Y~L~avV  389 (470)
                      .++|++|+|||+||.++.  +...|+...|.||..|||.++....                      ......|+|+|||
T Consensus        96 ~~lP~vLiIhLKRF~~~~--~~~~Kl~~~I~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi  173 (241)
T cd02670          96 AKAPSCLIICLKRYGKTE--GKAQKMFKKILIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAV  173 (241)
T ss_pred             hhCCCeEEEEEEccccCC--CcceeCCcEECCCCcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEE
Confidence            489999999999999976  4458999999999999999886442                      2345689999999


Q ss_pred             EeecCCCCCcEEEEEEecC-------------CcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130         390 IHCGSGPNRGHYISIVKSH-------------DFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ  450 (470)
Q Consensus       390 ~H~G~~~~~GHY~a~vr~~-------------~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~  450 (470)
                      +|.|.+..+|||+||+|..             +.|++|||..|+++.......      .......+||||||+
T Consensus       174 ~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~~~~~~~~~------~~~~~~~~aYmLFYq  241 (241)
T cd02670         174 CHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGVSNGFNI------PAARLLEDPYMLFYQ  241 (241)
T ss_pred             EeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCccccccccccccc------chhcccCCceEEEeC
Confidence            9999888999999999964             689999999988875432110      001257899999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase

Probab=99.97  E-value=6.7e-31  Score=255.38  Aligned_cols=254  Identities=20%  Similarity=0.321  Sum_probs=208.0

Q ss_pred             ccccc-CCchhhhh--hhhccchHH-----------------------HHHhh-hcCCccchhhHHHHHHhhcccCCCCC
Q psy2130          23 FGLVN-GKTCKEKE--DRIEKSQPF-----------------------WEQTS-LQDKISLGWECSLILELDLCSSDEFD   75 (470)
Q Consensus        23 ~GL~N-GNtCy~Ns--Q~L~~~~~f-----------------------~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~f~   75 (470)
                      +||.| +++||+||  |+|++++++                       |+++. ..+. ......+|+++++ .......
T Consensus         1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~~c~~e~cL~cELgfLf~ml~~~~~g-~~cq~sNflr~l~-~~~~a~~   78 (295)
T PF13423_consen    1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHLECPKEFCLLCELGFLFDMLDSKAKG-INCQASNFLRALS-WIPEAAA   78 (295)
T ss_pred             CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCcCCCccccHHHHHHHHHHHhhhhcCC-CcChHHHHHHHHh-cCHHHHh
Confidence            59999 99999999  999999998                       44444 3333 6666779999999 5555566


Q ss_pred             CcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCcccc
Q psy2130          76 NYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSK  155 (470)
Q Consensus        76 ~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~  155 (470)
                      .+.|+|+++|+++||+.|+.|+..........             .........+.|.++|+.......+|..|+..+.+
T Consensus        79 l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~  145 (295)
T PF13423_consen   79 LGLQQDIQSLNRFLLEQLSMELLTFKPDIFHT-------------SENSSSSPESSISQLFGTSFETTIRCTSCGHESVK  145 (295)
T ss_pred             cchhHHHHHHHHHHHHHHhHHHHhcCcccccc-------------cccccCCCcchHHHHhCcceeeeecccccCCeEEe
Confidence            67799999999999999999997665432110             01112345667999999999999999999999999


Q ss_pred             cCCCcccccccCC---CCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCC
Q psy2130         156 DEDFFDLQVDIKQ---NTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFG  232 (470)
Q Consensus       156 ~~~f~~Lsl~i~~---~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~g  232 (470)
                      .+....+.|..|.   ..++.++|+.++..|..   ....|++|+++....                             
T Consensus       146 ~~~~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~---~~a~C~~C~~~~~~~-----------------------------  193 (295)
T PF13423_consen  146 ESSTLVLDLPYPPSNSNVTFSQVLEHSLNREQQ---TRAWCEKCNKYQPTE-----------------------------  193 (295)
T ss_pred             ecceeeeeccCCCCCccchHHHHHHHHHhhccc---cccccccccccccee-----------------------------
Confidence            9999899888886   68999999999988887   568999999987776                             


Q ss_pred             CcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCcccccc
Q psy2130         233 NTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQD  312 (470)
Q Consensus       233 ntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqD  312 (470)
                                                                                                      
T Consensus       194 --------------------------------------------------------------------------------  193 (295)
T PF13423_consen  194 --------------------------------------------------------------------------------  193 (295)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC-------CCCCcceEE
Q psy2130         313 AHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA-------VNPDRMYNL  385 (470)
Q Consensus       313 a~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~-------~~~~~~Y~L  385 (470)
                                    .+..+.++|+||.|.+++.....  .+..|....+.+|..+++..+..+.       .....+|+|
T Consensus       194 --------------~~r~i~~LPpVL~In~~~~~~~~--~w~~~~~~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L  257 (295)
T PF13423_consen  194 --------------QRRTIRSLPPVLSINLNRYSEEE--FWPKKNWLKIWIPPSINLPHFIADDSQSDLEGESGIFKYEL  257 (295)
T ss_pred             --------------eeeeccCCCcEEEEEccCCCccc--ccccccCCceecceeeeccccccccccccccCCCCceEEEE
Confidence                          77888999999999999998872  3357888899999998887766432       446689999


Q ss_pred             EEEEEeecCCCCCcEEEEEEecC----CcEEEEeCcce
Q psy2130         386 VAVVIHCGSGPNRGHYISIVKSH----DFWLLFDDDVV  419 (470)
Q Consensus       386 ~avV~H~G~~~~~GHY~a~vr~~----~~W~~~nD~~V  419 (470)
                      .|+|||.|.+..+|||||+||..    ++||+|||..|
T Consensus       258 ~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV  295 (295)
T PF13423_consen  258 RSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV  295 (295)
T ss_pred             EEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence            99999999999999999999964    79999999754

>KOG1871|consensus

Probab=99.96  E-value=1.9e-29  Score=237.17  Aligned_cols=243  Identities=26%  Similarity=0.353  Sum_probs=183.9

Q ss_pred             CCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCC---------------C-C-CCC------------CCCCCCC
Q psy2130          74 FDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSA---------------P-D-GGG------------GDNHSSS  124 (470)
Q Consensus        74 f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~---------------~-~-~~~------------~~~~~~~  124 (470)
                      ...|.|.||.|||.++||.||||+.+..+..........               + + +..            .......
T Consensus       139 ~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~  218 (420)
T KOG1871|consen  139 LQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRA  218 (420)
T ss_pred             ccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccccccccccccccchhhcccccCchhhhcCCcccCccCCC
Confidence            356899999999999999999998765433221111100               0 0 000            0011223


Q ss_pred             CCCCchHHHHhhccccccceeccccCCcccccCCCccccccc--CCCCCHHHHhccCCccccccCCCccccCCccccccc
Q psy2130         125 GFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDI--KQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEA  202 (470)
Q Consensus       125 ~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i--~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~  202 (470)
                      .....++|+++|+|++++.+.-++ .++|...+||.-|.|+|  .+..++++++..+...|.+.   .|.-. -+....+
T Consensus       219 ~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~i~sv~~ales~~~re~lp---~~st~-s~~eV~~  293 (420)
T KOG1871|consen  219 DSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEKIHSVQDALESLVARESLP---GYSTK-SGQEVEA  293 (420)
T ss_pred             CCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeeccccCCHHHHhhccChhhccc---ceecC-CCCeech
Confidence            344567899999999999988776 55679999999999999  56789999999999999873   24322 3444444


Q ss_pred             cCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhC
Q psy2130         203 QGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATH  282 (470)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~  282 (470)
                      .                                                                               
T Consensus       294 s-------------------------------------------------------------------------------  294 (420)
T KOG1871|consen  294 S-------------------------------------------------------------------------------  294 (420)
T ss_pred             h-------------------------------------------------------------------------------
Confidence            4                                                                               


Q ss_pred             CCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEe
Q psy2130         283 KKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVV  362 (470)
Q Consensus       283 ~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~  362 (470)
                                                                  ++..+.++|++|++|++||.+.. .++..|+.+.++
T Consensus       295 --------------------------------------------~q~~leklp~vlilhlkrF~ye~-tgg~~k~~K~i~  329 (420)
T KOG1871|consen  295 --------------------------------------------SQTTLEKLPPVLILHLKRFVYEK-TGGARKLGKKIE  329 (420)
T ss_pred             --------------------------------------------hhhhHhhcchhhhhhhhHHHHHh-ccchhhhchhhh
Confidence                                                        77888999999999999999874 466789999999


Q ss_pred             cCcccccccCCC------CCCCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhhhhcCCC
Q psy2130         363 FPLELRLFHLSD------DAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLT  434 (470)
Q Consensus       363 fp~~ldl~~~~~------~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~g~~  434 (470)
                      +|-.|.+...+-      ........|+|.+||.|+|.+++.|||..-+.+  .+.|+.+||+.|..+..++|+...   
T Consensus       330 ~~~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t---  406 (420)
T KOG1871|consen  330 YPWTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVT---  406 (420)
T ss_pred             ccceeeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhcccc---
Confidence            998876643221      112345789999999999999999999999986  479999999999999999997643   


Q ss_pred             CCCCCCCCcEEEEEEEecC
Q psy2130         435 SDHQKSSETGYILFYQSRD  453 (470)
Q Consensus       435 ~~~~~~~~~aYiLfY~r~~  453 (470)
                           ...+||+|+|.|.+
T Consensus       407 -----~~r~~yllyY~~~d  420 (420)
T KOG1871|consen  407 -----GSRTPYLLYYIEAD  420 (420)
T ss_pred             -----CccchheeEeeecC
Confidence                 47899999999864

>KOG1872|consensus

Probab=99.94  E-value=4.3e-27  Score=227.16  Aligned_cols=220  Identities=30%  Similarity=0.448  Sum_probs=187.7

Q ss_pred             ccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccC-----hHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHh
Q psy2130         225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKN-----KETLLSCLADLFHNIATHKKKVGSIAPKKFITRLR  299 (470)
Q Consensus       225 ~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~-----~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~  299 (470)
                      ++|+.|+|||||||+.+|+|-..|+++..+..+.......     ...+..+++.+|+.+...    ..+.|..+..+++
T Consensus       105 p~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~----~~v~pi~llqtl~  180 (473)
T KOG1872|consen  105 PVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK----GAVAPINLLQTLS  180 (473)
T ss_pred             CccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc----CCcchHHHHHHHH
Confidence            3499999999999999999999999999988776433222     466777889999988876    6889999999999


Q ss_pred             hccCcCCc------cccccHHHHHHHHHHHHHh-----------------------------------------------
Q psy2130         300 KEKDEFDN------YMQQDAHEFLNFLINHINE-----------------------------------------------  326 (470)
Q Consensus       300 ~~~~~~~~------~~QqDa~E~~~~ll~~L~~-----------------------------------------------  326 (470)
                      +..+.|.-      ..||||.|++..++..++.                                               
T Consensus       181 ~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L  260 (473)
T KOG1872|consen  181 SQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAPCLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQL  260 (473)
T ss_pred             HHhHHHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccccchhHHHHHhhccccccceeeccCccccccccccccccc
Confidence            98888864      8899999999999888777                                               


Q ss_pred             -------------------------------------hhhhhcCCCceEEEEeeeeeeeccccccccccceEecCccccc
Q psy2130         327 -------------------------------------KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRL  369 (470)
Q Consensus       327 -------------------------------------~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl  369 (470)
                                                           +...|.+||.+|+++..||.+....+...|+-+.|.||..||.
T Consensus       261 ~c~i~~~~~~~k~Gl~~~~~e~~~K~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld~  340 (473)
T KOG1872|consen  261 KCIINKTVHDMRFGLKSGLSEEIQKISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLDQ  340 (473)
T ss_pred             ceEEeeeechhhhhhhhhhhhhhhccCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhhH
Confidence                                                 6667999999999999999999888888999999999999987


Q ss_pred             ccCCCCC--------------------------------------------------CCCCcceEEEEEEEeecCCCCCc
Q psy2130         370 FHLSDDA--------------------------------------------------VNPDRMYNLVAVVIHCGSGPNRG  399 (470)
Q Consensus       370 ~~~~~~~--------------------------------------------------~~~~~~Y~L~avV~H~G~~~~~G  399 (470)
                      ...+...                                                  ++....|+|+|||.|.|.+..+|
T Consensus       341 ~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~vithkgrss~sg  420 (473)
T KOG1872|consen  341 QDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLVITHKGRSSKSG  420 (473)
T ss_pred             HHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhccccccccccceeeeeEeeeccccccCCC
Confidence            5543211                                                  12257799999999999999999


Q ss_pred             EEEEEEec-CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEecC
Q psy2130         400 HYISIVKS-HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRD  453 (470)
Q Consensus       400 HY~a~vr~-~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~~  453 (470)
                      ||++++|. .+.|+.|||..|.-+..+++..+.|+.     .+..||||+|+-+.
T Consensus       421 hy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsggg-----d~~~ayvllyk~~~  470 (473)
T KOG1872|consen  421 HYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGG-----DWHSAYVLLYKARV  470 (473)
T ss_pred             cceEEEeccCCceeeccccccccccccceeeecCCC-----ccchhhheeecccc
Confidence            99999996 479999999999999999998888774     48899999998554

>KOG2026|consensus

Probab=99.87  E-value=1.6e-22  Score=189.68  Aligned_cols=247  Identities=26%  Similarity=0.401  Sum_probs=203.3

Q ss_pred             CCccccCCccccccccCCCcccccccc-----------------------------------------------------
Q psy2130         188 DNKFKCDNCASYQEAQGPNISALEKEI-----------------------------------------------------  214 (470)
Q Consensus       188 ~~~~~C~~C~~~~~~~~~~~~~~~~~~-----------------------------------------------------  214 (470)
                      .+.|.|..|+.+-++++.+|+++.+..                                                     
T Consensus        39 LnvyAclvcg~y~qgr~~kS~A~~h~l~~ghhvf~nl~telkfyvlpe~~ei~d~s~~~ikhslkptftr~~cp~lD~~n  118 (442)
T KOG2026|consen   39 LNVYACLVCGKYFQGRGEKSHAYTHSLEEGHHVFLNLSTELKFYVLPENYEIDDPSLGDIKHSLKPTFTKTDCPNLDKVN  118 (442)
T ss_pred             cceeeeeeeCchhhCcCccccchhccccccccceeccccceeEEecchhccccCchhhhhhccccceeehhhcccccccc
Confidence            378999999999999999998887711                                                     


Q ss_pred             -----CCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCcc
Q psy2130         215 -----GPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSI  289 (470)
Q Consensus       215 -----~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~  289 (470)
                           ..+..++-.|++||.|+.++-|.|+++|+|.+.+++|++++.-.. -.+....+...|..+++++|........+
T Consensus       119 r~~~raLd~~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n-~~d~~~~lv~rl~~l~rklw~~r~fk~hv  197 (442)
T KOG2026|consen  119 RKLSRALDGSTYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN-YFDNLTELVQRLGELIRKLWNPRNFKGHV  197 (442)
T ss_pred             hhhhhhhcCCcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccccc-ccchhHHHHHHHHHHHHHhcChhhhcccC
Confidence                 011112245999999999999999999999999999999987644 34456778889999999999999999999


Q ss_pred             ChHHHHHHHhh-ccCcCCccccccHHHHHHHHHHHHHh------------------------------------------
Q psy2130         290 APKKFITRLRK-EKDEFDNYMQQDAHEFLNFLINHINE------------------------------------------  326 (470)
Q Consensus       290 ~p~~~~~~l~~-~~~~~~~~~QqDa~E~~~~ll~~L~~------------------------------------------  326 (470)
                      +|.+++++... ..+.|..++|.|+.||+.||+++||.                                          
T Consensus       198 Sphe~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~  277 (442)
T KOG2026|consen  198 SPHEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKKASSIIHKSFQGEVRIVKEKQGEASENENKEISVMP  277 (442)
T ss_pred             CHHHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCCchhHhhHhhcceEEeeeeccccccccccceEEEEe
Confidence            99999998866 77889999999999999999999999                                          


Q ss_pred             -------------------------------------------------hhhhhcCCCceEEEEeeeeeeeccccccccc
Q psy2130         327 -------------------------------------------------KCMKVKKLPMILALHLKRFKYMDKMNRHVKV  357 (470)
Q Consensus       327 -------------------------------------------------~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~  357 (470)
                                                                       ++..+.++|++|++|++||.-+.  .-..|+
T Consensus       278 Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e~~~~~~~~rf~l~k~P~ylifh~~rF~kNn--~f~ekN  355 (442)
T KOG2026|consen  278 FLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTEVVTPKLAMRFRLTKLPRYLIFHMKRFKKNN--FFKEKN  355 (442)
T ss_pred             eEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeeeecchhhhhheeeecCCceEEEEeeeccccC--cccccC
Confidence                                                             45578899999999999998765  334799


Q ss_pred             cceEecC-cccccccCCCC---CCCCCcceEEEEEEEeecCCCCCcEEEEEEecC--CcEEEEeCcceeeechhhhhhhc
Q psy2130         358 SHRVVFP-LELRLFHLSDD---AVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSH--DFWLLFDDDVVDKIDQSTIEDFF  431 (470)
Q Consensus       358 ~~~v~fp-~~ldl~~~~~~---~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~--~~W~~~nD~~V~~v~~~~v~~~~  431 (470)
                      .+.++|| ..+++.+..+.   .......|.|.|-++|-   ..-|||..+++++  ++||.++|-.|++...+-|    
T Consensus       356 pTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~---~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi----  428 (442)
T KOG2026|consen  356 PTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE---DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMI----  428 (442)
T ss_pred             CceeeccCCccchhhhhhhcccccCccccccchhhhhcC---cccCceEEEEEeCCCcceEEecccchhhhhhHHH----
Confidence            9999999 45665544332   12233789999999996   4689999999964  7999999999999888766    


Q ss_pred             CCCCCCCCCCCcEEEEEEEec
Q psy2130         432 GLTSDHQKSSETGYILFYQSR  452 (470)
Q Consensus       432 g~~~~~~~~~~~aYiLfY~r~  452 (470)
                              .-+.+||.+|++.
T Consensus       429 --------~L~Es~iQiwe~~  441 (442)
T KOG2026|consen  429 --------FLKESFIQIWEKQ  441 (442)
T ss_pred             --------HHHHHHHHHHhcc
Confidence                    3568888888875

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=99.75  E-value=8e-18  Score=171.93  Aligned_cols=108  Identities=31%  Similarity=0.509  Sum_probs=92.4

Q ss_pred             CCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccc--ccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHH
Q psy2130         220 PPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN--KKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITR  297 (470)
Q Consensus       220 ~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~--~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~  297 (470)
                      +..+|++||.|+||||||||+||+|+++|+||++++......  .....++...+..++++++........++|.+++.+
T Consensus       114 ~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~  193 (440)
T cd02669         114 PYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQA  193 (440)
T ss_pred             CccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHH
Confidence            345699999999999999999999999999999999755332  124557899999999999987665678999999999


Q ss_pred             Hhhc-cCcCCccccccHHHHHHHHHHHHHhh
Q psy2130         298 LRKE-KDEFDNYMQQDAHEFLNFLINHINEK  327 (470)
Q Consensus       298 l~~~-~~~~~~~~QqDa~E~~~~ll~~L~~~  327 (470)
                      +... ...|..+.||||+||+.+||+.|++.
T Consensus       194 l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~  224 (440)
T cd02669         194 VSKVSKKKFSITEQSDPVEFLSWLLNTLHKD  224 (440)
T ss_pred             HHhhcccccCCcccCCHHHHHHHHHHHHHHH
Confidence            9875 46788999999999999999999963

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02658 Peptidase_C19B A subfamily of Peptidase C19

Probab=99.65  E-value=3.4e-16  Score=153.63  Aligned_cols=101  Identities=33%  Similarity=0.454  Sum_probs=86.4

Q ss_pred             CcccCCCcchhHHHHHHHhhchHHHHHHhcccc----ccccChHHHHHHHHHHHHHHHhCCCC------------CCccC
Q psy2130         227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKA----KNKKNKETLLSCLADLFHNIATHKKK------------VGSIA  290 (470)
Q Consensus       227 GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~----~~~~~~~~l~~~l~~l~~~l~~~~~~------------~~~~~  290 (470)
                      ||.|+||||||||+||+|+++|+||++++....    ....+...+..+|.+++..++.....            ...+.
T Consensus         1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~   80 (311)
T cd02658           1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK   80 (311)
T ss_pred             CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence            899999999999999999999999999976332    22234567889999999998765432            35789


Q ss_pred             hHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhh
Q psy2130         291 PKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEK  327 (470)
Q Consensus       291 p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~  327 (470)
                      |..|+.+++...+.|..+.||||+||+..|++.|++.
T Consensus        81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~  117 (311)
T cd02658          81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRE  117 (311)
T ss_pred             cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999964

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1275|consensus

Probab=99.63  E-value=2.6e-15  Score=154.69  Aligned_cols=286  Identities=16%  Similarity=0.187  Sum_probs=178.7

Q ss_pred             CCccccccc-CCchhhhh--hhhccchHH----------------------HHHhhhcCCccchhhHHHHHHhhcccCCC
Q psy2130          19 NERYFGLVN-GKTCKEKE--DRIEKSQPF----------------------WEQTSLQDKISLGWECSLILELDLCSSDE   73 (470)
Q Consensus        19 ~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f----------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   73 (470)
                      .+.+.||.- +-+-|.||  |.|+++|++                      |.++..+.. ..+...+|+++++ .....
T Consensus       496 qT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~C~~e~CL~CELGFLF~Ml~~S~G-~~Cqa~NFlraf~-t~~~a  573 (1118)
T KOG1275|consen  496 QTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHICTKEFCLLCELGFLFTMLDSSTG-DPCQANNFLRAFR-TNPEA  573 (1118)
T ss_pred             cceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCccchhHHHHHHHHHHHHHHhhhcC-CccchhHHHHHHh-hChHh
Confidence            467899999 99999999  999999999                      333333333 5666669999988 32221


Q ss_pred             CCCc----------------ccccHHHHHHHHHHHHHHHHHh-cCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhh
Q psy2130          74 FDNY----------------MQQDAHEFLNFLINHINEVILS-ERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIF  136 (470)
Q Consensus        74 f~~~----------------~QqDA~Efl~~LLd~L~ee~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F  136 (470)
                      -..+                .-|||.-|.....+...+ +.. .+-+.+...    .       ...........+.+.|
T Consensus       574 ~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d-~~~~~~~~~s~~~----~-------~~~~~vn~~~~l~q~F  641 (1118)
T KOG1275|consen  574 SALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLD-CQDCRGLQQSESV----D-------GESFKVNYAPVLQQSF  641 (1118)
T ss_pred             hhhcccccchhhccccchHHHhhhhhhccchhhhhhhh-HHHhhhhhhhhcc----c-------CceeeecchhHHHHHh
Confidence            1110                122333222222211111 100 000000000    0       0001122345789999


Q ss_pred             ccccccceeccccCCcccccCCCcccccccCCCCCHHHHhcc-CC------ccccccCCCccccCCccccccccCCCccc
Q psy2130         137 QGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRG-FS------STETLCSDNKFKCDNCASYQEAQGPNISA  209 (470)
Q Consensus       137 ~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~-~~------~~e~l~~~~~~~C~~C~~~~~~~~~~~~~  209 (470)
                      +-....+..|..|+..+.+......+.+..|. .++.+-++. +.      +.+.+....+..|+.|.+.....      
T Consensus       642 ~~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~-~~~id~~~~~~~F~~iL~R~l~l~kn~~~~C~~C~k~ep~~------  714 (1118)
T KOG1275|consen  642 CQEIEKSLRCGECGDEKQKSKSLLRKVLSYPN-VLLIDTLAKSNNFVEILKRSLSLFKNKQAWCETCTKPEPTS------  714 (1118)
T ss_pred             hhHHHHhhhcccccchhhhhhhhhheeecCCC-ccchhhcccccchHHHhhhhhhcccccccccccccCCCCcc------
Confidence            99999999999999998777777777777774 233222221 10      11222233457899999987666      


Q ss_pred             cccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCcc
Q psy2130         210 LEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSI  289 (470)
Q Consensus       210 ~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~  289 (470)
                                                                                                      
T Consensus       715 --------------------------------------------------------------------------------  714 (1118)
T KOG1275|consen  715 --------------------------------------------------------------------------------  714 (1118)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeecc--ccccccccceEecCccc
Q psy2130         290 APKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDK--MNRHVKVSHRVVFPLEL  367 (470)
Q Consensus       290 ~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~--~~~~~K~~~~v~fp~~l  367 (470)
                                                           .+..+..+|.+|.|...-+.....  ..+..|.-..|.+|+++
T Consensus       715 -------------------------------------q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~  757 (1118)
T KOG1275|consen  715 -------------------------------------QKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWF  757 (1118)
T ss_pred             -------------------------------------cccccccCcceeeeeeeccchhhhhhHHHhhccccccccchhe
Confidence                                                 666677888888777665543211  11113445566777766


Q ss_pred             ccccCCC------------------CCCCCCcceEEEEEEEeecCCCCCcEEEEEEec----------CCcEEEEeCcce
Q psy2130         368 RLFHLSD------------------DAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS----------HDFWLLFDDDVV  419 (470)
Q Consensus       368 dl~~~~~------------------~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~----------~~~W~~~nD~~V  419 (470)
                      .+.....                  .....-.+|+|.|+|+|.|.+.+.+|+|++|+.          +.+||.|||--|
T Consensus       758 ~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV  837 (1118)
T KOG1275|consen  758 HMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLV  837 (1118)
T ss_pred             eEEEecccceeeeeeccccCCCCccccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceee
Confidence            5533211                  112233789999999999998899999999983          259999999999


Q ss_pred             eeechhhhhhhcCCCCCCCCCCCcEEEEEE
Q psy2130         420 DKIDQSTIEDFFGLTSDHQKSSETGYILFY  449 (470)
Q Consensus       420 ~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY  449 (470)
                      .+|++++...+-|       .|+.|-||+|
T Consensus       838 ~~ite~EAl~~~~-------~WKvP~Il~Y  860 (1118)
T KOG1275|consen  838 SEITEEEALHFDG-------PWKVPAILYY  860 (1118)
T ss_pred             eeCChHHheEecc-------CccCcEEEEE
Confidence            9999987765554       5999999999

>cd02657 Peptidase_C19A A subfamily of Peptidase C19

Probab=99.62  E-value=1.5e-15  Score=148.72  Aligned_cols=98  Identities=35%  Similarity=0.610  Sum_probs=85.4

Q ss_pred             CcccCCCcchhHHHHHHHhhchHHHHHHhcccccc---ccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccC
Q psy2130         227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN---KKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKD  303 (470)
Q Consensus       227 GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~---~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~  303 (470)
                      ||.|+||||||||+||+|+++|+|++.++......   ......+..+|++|+..|+....   .+.|..++..++...+
T Consensus         1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~---~i~p~~~~~~l~~~~~   77 (305)
T cd02657           1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQE---PVPPIEFLQLLRMAFP   77 (305)
T ss_pred             CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCC---cCCcHHHHHHHHHHCc
Confidence            89999999999999999999999999999876542   33467899999999999987543   7899999999999888


Q ss_pred             cCC------ccccccHHHHHHHHHHHHHhh
Q psy2130         304 EFD------NYMQQDAHEFLNFLINHINEK  327 (470)
Q Consensus       304 ~~~------~~~QqDa~E~~~~ll~~L~~~  327 (470)
                      .|.      .++||||+||+..|++.|++.
T Consensus        78 ~f~~~~~~~~~~QqDA~EFl~~lld~L~~~  107 (305)
T cd02657          78 QFAEKQNQGGYAQQDAEECWSQLLSVLSQK  107 (305)
T ss_pred             CcccccCCCCccccCHHHHHHHHHHHHHHH
Confidence            884      448999999999999999864

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02666 Peptidase_C19J A subfamily of Peptidase C19

Probab=99.61  E-value=1.7e-15  Score=148.72  Aligned_cols=208  Identities=25%  Similarity=0.389  Sum_probs=141.6

Q ss_pred             ccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccc--------------c--------ChHHHHHHHHHHHHHHHhC
Q psy2130         225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNK--------------K--------NKETLLSCLADLFHNIATH  282 (470)
Q Consensus       225 ~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~--------------~--------~~~~l~~~l~~l~~~l~~~  282 (470)
                      ++||.|+||||||||+||+|+++|+||++++.++....              .        ....+..+|+.||..|+..
T Consensus         1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s   80 (343)
T cd02666           1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS   80 (343)
T ss_pred             CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence            68999999999999999999999999999998762211              0        1236899999999999965


Q ss_pred             CCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcC----------------CCceEEEEeeeee
Q psy2130         283 KKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKK----------------LPMILALHLKRFK  346 (470)
Q Consensus       283 ~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~----------------lP~~L~i~l~R~~  346 (470)
                      ..  ..+.|..++..++.        .||||+||+..+++.|+........                +..++...++...
T Consensus        81 ~~--~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i  150 (343)
T cd02666          81 NT--RSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQL  150 (343)
T ss_pred             CC--CccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEE
Confidence            53  47999998887653        8999999999999999862211110                1111222222111


Q ss_pred             eeccc----ccccccc---------------------------------------------------ceEecCccccccc
Q psy2130         347 YMDKM----NRHVKVS---------------------------------------------------HRVVFPLELRLFH  371 (470)
Q Consensus       347 ~~~~~----~~~~K~~---------------------------------------------------~~v~fp~~ldl~~  371 (470)
                      .....    ....+..                                                   ..+.|++.+.+.+
T Consensus       151 ~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~~~~~P~vl~~qlq~~~~~~~~~~~~dr  230 (343)
T cd02666         151 VPESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDSLTKLPQRSQVQAQLAQPLQRELISMDR  230 (343)
T ss_pred             EecccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhhhccCCHHHHHHHhhcccccchheeecc
Confidence            10000    0000000                                                   1122333333322


Q ss_pred             CCCCC---------------------------------------CCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCc
Q psy2130         372 LSDDA---------------------------------------VNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDF  410 (470)
Q Consensus       372 ~~~~~---------------------------------------~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~  410 (470)
                      +.-..                                       ......|+|+|||+|.|. .++|||++|+|+  ++.
T Consensus       231 y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~~~  309 (343)
T cd02666         231 YELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFIHRGE-ASSGHYWVYIKDFEENV  309 (343)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEEeecC-CCCCeEEEEEEECCCCe
Confidence            21110                                       125678999999999999 699999999996  479


Q ss_pred             EEEEeCcceeeechhhhhh-hcCCCCCCCCCCCcEEEEEEE
Q psy2130         411 WLLFDDDVVDKIDQSTIED-FFGLTSDHQKSSETGYILFYQ  450 (470)
Q Consensus       411 W~~~nD~~V~~v~~~~v~~-~~g~~~~~~~~~~~aYiLfY~  450 (470)
                      |++|||..|++++.++|.. -+|       ...+||||+|.
T Consensus       310 W~~~dD~~V~~v~~~ev~~~~~~-------~~~~pY~l~Yv  343 (343)
T cd02666         310 WRKYNDETVTVVPASEVFLFTLG-------NTATPYFLVYV  343 (343)
T ss_pred             EEEEECCeeEEecHHHHhhcccC-------CCCCCEEEEeC
Confidence            9999999999999887743 233       36799999994

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02660 Peptidase_C19D A subfamily of Peptidase C19

Probab=99.60  E-value=2.9e-15  Score=148.16  Aligned_cols=101  Identities=27%  Similarity=0.485  Sum_probs=86.2

Q ss_pred             cCcccCCCcchhHHHHHHHhhchHHHHHHhccccc----cccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhc
Q psy2130         226 FGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAK----NKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKE  301 (470)
Q Consensus       226 ~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~----~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~  301 (470)
                      +||.|+||||||||+||+|+++|+|+++++.....    ......++..+|+.++..++... ....+.|..++.++...
T Consensus         1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~~~~l~~~~~~   79 (328)
T cd02660           1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSG-DRSPYGPINLLYLSWKH   79 (328)
T ss_pred             CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCC-CCCCcCHHHHHHHHHhh
Confidence            59999999999999999999999999999886433    23446678999999999995432 23467899999999888


Q ss_pred             cCcCCccccccHHHHHHHHHHHHHhh
Q psy2130         302 KDEFDNYMQQDAHEFLNFLINHINEK  327 (470)
Q Consensus       302 ~~~~~~~~QqDa~E~~~~ll~~L~~~  327 (470)
                      .+.|..++||||+||+..||+.|++.
T Consensus        80 ~~~f~~~~QqDa~Efl~~ll~~l~~~  105 (328)
T cd02660          80 SRNLAGYSQQDAHEFFQFLLDQLHTH  105 (328)
T ss_pred             chhhcccccccHHHHHHHHHHHHHHH
Confidence            88899999999999999999999973

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02671 Peptidase_C19O A subfamily of Peptidase C19

Probab=99.60  E-value=2.3e-15  Score=148.02  Aligned_cols=103  Identities=29%  Similarity=0.554  Sum_probs=77.7

Q ss_pred             CCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccC--hHHHHHHHHHHHHHHHhCCCCCCccChHHHH
Q psy2130         218 RFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKN--KETLLSCLADLFHNIATHKKKVGSIAPKKFI  295 (470)
Q Consensus       218 ~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~--~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~  295 (470)
                      +-+...+++||.|+||||||||+||+|+++|+|++.+..........  ...+...+++++    ...  .....|..++
T Consensus        17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~q~~~~~l~~~~----~~~--~~~~~P~~~~   90 (332)
T cd02671          17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQLQSSFLLNPEKY----NDE--LANQAPRRLL   90 (332)
T ss_pred             ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccCcHHHHHHHHHHHHHHH----hhc--ccccCHHHHH
Confidence            44556799999999999999999999999999999987764222111  111222222332    221  2244699999


Q ss_pred             HHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130         296 TRLRKEKDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       296 ~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      ..++...+.|..+.||||+||+..|++.|+.
T Consensus        91 ~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~  121 (332)
T cd02671          91 NALREVNPMYEGYLQHDAQEVLQCILGNIQE  121 (332)
T ss_pred             HHHHHhccccCCccccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999985

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.59  E-value=6.1e-16  Score=147.76  Aligned_cols=115  Identities=28%  Similarity=0.392  Sum_probs=82.1

Q ss_pred             cccccc-CCchhhhh--hhhccchHHHHHhhhc---------C------------------------CccchhhHHHHHH
Q psy2130          22 YFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQ---------D------------------------KISLGWECSLILE   65 (470)
Q Consensus        22 ~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~---------~------------------------~~~~~~~~~~~~~   65 (470)
                      |+||.| ||||||||  |+|+++|+|...+...         .                        ......+..++.+
T Consensus         1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~   80 (269)
T PF00443_consen    1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA   80 (269)
T ss_dssp             --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred             CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence            689999 99999999  9999999993332211         0                        0022223366677


Q ss_pred             hhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhcccccccee
Q psy2130          66 LDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETK  145 (470)
Q Consensus        66 l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~  145 (470)
                      +. ...+.|..+.||||+||+..||+.|++++.........               ........+++.++|.+++...++
T Consensus        81 l~-~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~f~~~~~~~~~  144 (269)
T PF00443_consen   81 LS-SINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSW---------------KNTNSSEDSLISDLFGGQFESSIK  144 (269)
T ss_dssp             HH-HHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHH---------------HHHHCCEESHHHHHH-EEEEEEEE
T ss_pred             cc-ccccccccccccchhhhhcccccccchhhccccccccc---------------cccccccccccccccccccccccc
Confidence            77 66677999999999999999999999998653320000               001134577899999999999999


Q ss_pred             ccccCCc
Q psy2130         146 CLNCETV  152 (470)
Q Consensus       146 C~~C~~~  152 (470)
                      |..|+..
T Consensus       145 c~~c~~~  151 (269)
T PF00443_consen  145 CSSCKNS  151 (269)
T ss_dssp             ETTTTCE
T ss_pred             ccccccc
Confidence            9999987

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....

>cd02663 Peptidase_C19G A subfamily of Peptidase C19

Probab=99.59  E-value=3e-15  Score=146.05  Aligned_cols=81  Identities=72%  Similarity=1.212  Sum_probs=76.7

Q ss_pred             CcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCC
Q psy2130         227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFD  306 (470)
Q Consensus       227 GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~  306 (470)
                      ||.|+||||||||+||+|++                   ..++.+|+.+|..|+........++|..|+.+++...+.|.
T Consensus         1 Gl~NlGnTCY~NsvLQ~L~~-------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~f~   61 (300)
T cd02663           1 GLENFGNTCYCNSVLQALYF-------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENELFD   61 (300)
T ss_pred             CccCCCcceehhHHHHHhhh-------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCCCC
Confidence            89999999999999999998                   67888999999999998877789999999999999999999


Q ss_pred             ccccccHHHHHHHHHHHHHh
Q psy2130         307 NYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       307 ~~~QqDa~E~~~~ll~~L~~  326 (470)
                      .++||||+||+..||+.|++
T Consensus        62 ~~~QqDA~EFl~~lLd~l~~   81 (300)
T cd02663          62 NYMHQDAHEFLNFLLNEIAE   81 (300)
T ss_pred             CCccccHHHHHHHHHHHHHH
Confidence            99999999999999999987

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02668 Peptidase_C19L A subfamily of Peptidase C19

Probab=99.58  E-value=4.7e-15  Score=146.23  Aligned_cols=93  Identities=30%  Similarity=0.534  Sum_probs=79.8

Q ss_pred             CcccCCCcchhHHHHHHHhhchHHHHHHhccccccc-----------cChHHHHHHHHHHHHHHHhCCCCCCccChHHHH
Q psy2130         227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNK-----------KNKETLLSCLADLFHNIATHKKKVGSIAPKKFI  295 (470)
Q Consensus       227 GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~-----------~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~  295 (470)
                      ||.|+||||||||+||+|+++|+|++.++.......           .....++.+|+.+|..|+...  ...++|..|+
T Consensus         1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~--~~~i~p~~f~   78 (324)
T cd02668           1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGN--RSVVDPSGFV   78 (324)
T ss_pred             CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCC--CceEChHHHH
Confidence            899999999999999999999999999987654321           124578999999999999765  3578999999


Q ss_pred             HHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130         296 TRLRKEKDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       296 ~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      ..++     +..++||||+||+..||+.|++
T Consensus        79 ~~l~-----~~~~~QqDa~EFl~~lLd~L~~  104 (324)
T cd02668          79 KALG-----LDTGQQQDAQEFSKLFLSLLEA  104 (324)
T ss_pred             HHhC-----CCCccccCHHHHHHHHHHHHHH
Confidence            8884     5678999999999999999986

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02661 Peptidase_C19E A subfamily of Peptidase C19

Probab=99.56  E-value=8.5e-15  Score=143.15  Aligned_cols=100  Identities=29%  Similarity=0.459  Sum_probs=86.1

Q ss_pred             ccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccc--ccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhcc
Q psy2130         225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN--KKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEK  302 (470)
Q Consensus       225 ~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~--~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~  302 (470)
                      ++||.|.||||||||+||+|+++|+|++++++.....  ......+..+|+.++..+.....  ....|..+..++....
T Consensus         1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~p~~~~~~l~~~~   78 (304)
T cd02661           1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSG--PGSAPRIFSSNLKQIS   78 (304)
T ss_pred             CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCC--CccChHHHHHHHHHHH
Confidence            5899999999999999999999999999998754332  33345788899999988876543  4678999999999999


Q ss_pred             CcCCccccccHHHHHHHHHHHHHh
Q psy2130         303 DEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       303 ~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      +.|..+.||||+||+..|++.|++
T Consensus        79 ~~f~~~~qqDa~Efl~~ll~~l~~  102 (304)
T cd02661          79 KHFRIGRQEDAHEFLRYLLDAMQK  102 (304)
T ss_pred             HhhcCcchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999986

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02664 Peptidase_C19H A subfamily of Peptidase C19

Probab=99.53  E-value=2.1e-14  Score=141.61  Aligned_cols=95  Identities=35%  Similarity=0.610  Sum_probs=76.9

Q ss_pred             CcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHH-HHHHHhhccCcC
Q psy2130         227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKK-FITRLRKEKDEF  305 (470)
Q Consensus       227 GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~-~~~~l~~~~~~~  305 (470)
                      ||.|+||||||||+||+|+++|+||+.+++...........+..+|+.++..+......  ...|.. ++..+.  .+.|
T Consensus         1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~--~~~~~~~~l~~~~--~~~f   76 (327)
T cd02664           1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDSQSVMKKLQLLQAHLMHTQRR--AEAPPDYFLEASR--PPWF   76 (327)
T ss_pred             CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccccCCcchHHHHHHHHHHHHhhcCCc--ccCCHHHHHHHhc--cccc
Confidence            89999999999999999999999999999987654445566788899999888754332  344444 555443  4667


Q ss_pred             CccccccHHHHHHHHHHHHH
Q psy2130         306 DNYMQQDAHEFLNFLINHIN  325 (470)
Q Consensus       306 ~~~~QqDa~E~~~~ll~~L~  325 (470)
                      ..+.||||+||+..||+.|+
T Consensus        77 ~~~~QqDa~EFl~~lLd~l~   96 (327)
T cd02664          77 TPGSQQDCSEYLRYLLDRLH   96 (327)
T ss_pred             CCCCcCCHHHHHHHHHHHHH
Confidence            88999999999999999997

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02659 peptidase_C19C A subfamily of Peptidase C19

Probab=99.53  E-value=1.6e-14  Score=143.26  Aligned_cols=101  Identities=27%  Similarity=0.452  Sum_probs=78.8

Q ss_pred             CccCcccCCCcchhHHHHHHHhhchHHHHHHhccc-cccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhcc
Q psy2130         224 RYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYK-AKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEK  302 (470)
Q Consensus       224 ~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~-~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~  302 (470)
                      |++||.|+||||||||+||+|+++|+|++.++... .........+..+|+.+|..+......  ...|..+........
T Consensus         1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~~~~--~~~~~~~~~~~~~~~   78 (334)
T cd02659           1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSESP--VKTTELTDKTRSFGW   78 (334)
T ss_pred             CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhCCcc--ccCcchhheeccCCC
Confidence            68999999999999999999999999999999863 223344567899999999999876553  233333322222234


Q ss_pred             CcCCccccccHHHHHHHHHHHHHh
Q psy2130         303 DEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       303 ~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      ..+..+.||||+||+..|++.|++
T Consensus        79 ~~~~~~~QqDa~Efl~~ll~~l~~  102 (334)
T cd02659          79 DSLNTFEQHDVQEFFRVLFDKLEE  102 (334)
T ss_pred             CCCCcccchhHHHHHHHHHHHHHH
Confidence            567789999999999999999986

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0944|consensus

Probab=99.53  E-value=2e-14  Score=144.41  Aligned_cols=107  Identities=37%  Similarity=0.564  Sum_probs=96.0

Q ss_pred             CCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcc----ccccccChHHHHHHHHHHHHHHHhCCCCC--------C
Q psy2130         220 PPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEY----KAKNKKNKETLLSCLADLFHNIATHKKKV--------G  287 (470)
Q Consensus       220 ~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~----~~~~~~~~~~l~~~l~~l~~~l~~~~~~~--------~  287 (470)
                      -..++++||+|+||+||+|||||+|+.+|.|......-    ......+.+.|-+++.+|...|.+.....        .
T Consensus       302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qn  381 (763)
T KOG0944|consen  302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQN  381 (763)
T ss_pred             ccCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccC
Confidence            34789999999999999999999999999999877653    33446678999999999999999887665        4


Q ss_pred             ccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130         288 SIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       288 ~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      .++|..|+..++..++.|.+.+||||+||+.+|++.|.+
T Consensus       382 gIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~  420 (763)
T KOG0944|consen  382 GISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRE  420 (763)
T ss_pred             CcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhh
Confidence            899999999999999999999999999999999999986

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=6.2e-14  Score=139.80  Aligned_cols=102  Identities=32%  Similarity=0.527  Sum_probs=87.0

Q ss_pred             CCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccc-------cChHHHHHHHHHHHHHHHhCCCCCCccChHHHH
Q psy2130         223 ERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNK-------KNKETLLSCLADLFHNIATHKKKVGSIAPKKFI  295 (470)
Q Consensus       223 ~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~-------~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~  295 (470)
                      .|-+||.|+||||||||+||||.|++.+|++++...-.+.       .....+..++..|+..+...  ...++.|..|+
T Consensus       263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~--~~haf~Ps~fK  340 (823)
T COG5560         263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDG--NLHAFTPSGFK  340 (823)
T ss_pred             ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCc--cccccChHHHH
Confidence            4889999999999999999999999999999997433221       12445667777888877744  44589999999


Q ss_pred             HHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130         296 TRLRKEKDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       296 ~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      .++...+..|.++.|||.+||+.++||.||+
T Consensus       341 ~tIG~fn~~fsGy~QQDSqEFiaflLDgLHE  371 (823)
T COG5560         341 KTIGSFNEEFSGYDQQDSQEFIAFLLDGLHE  371 (823)
T ss_pred             HHHhhhHHHhcCccchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999

>KOG1865|consensus

Probab=99.48  E-value=6.9e-14  Score=138.92  Aligned_cols=108  Identities=29%  Similarity=0.481  Sum_probs=93.6

Q ss_pred             CCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccc--cccChHHHHHHHHHHHHHHHhCCCCCCccChHHH
Q psy2130         217 DRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAK--NKKNKETLLSCLADLFHNIATHKKKVGSIAPKKF  294 (470)
Q Consensus       217 ~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~--~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~  294 (470)
                      ...+......||.|.|||||+||+||+|.++||+.++|+.....  ......++++.++..+.........  .+.|..+
T Consensus       100 ~~~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~~g~--pisP~~i  177 (545)
T KOG1865|consen  100 SSDRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHNPGH--PISPSQI  177 (545)
T ss_pred             cccccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcCCCC--ccChHHH
Confidence            33345677899999999999999999999999999999975544  4566778888998888776665443  8999999


Q ss_pred             HHHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130         295 ITRLRKEKDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       295 ~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      +..|+.....|..+.|+|||||++.+++.|+.
T Consensus       178 ~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk  209 (545)
T KOG1865|consen  178 LSNLRNISAHFGRGRQEDAHEFLRFTVDAMQK  209 (545)
T ss_pred             HHhhhhhcccccCCchhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999987

>cd02667 Peptidase_C19K A subfamily of Peptidase C19

Probab=99.47  E-value=5.1e-14  Score=135.86  Aligned_cols=66  Identities=36%  Similarity=0.733  Sum_probs=61.4

Q ss_pred             CcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCC
Q psy2130         227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFD  306 (470)
Q Consensus       227 GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~  306 (470)
                      ||.|+||||||||+||+|+++|+|+++++.                                 .|..++..+....+.|.
T Consensus         1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~---------------------------------~P~~~~~~l~~~~~~f~   47 (279)
T cd02667           1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE---------------------------------TPKELFSQVCRKAPQFK   47 (279)
T ss_pred             CCcCCCCchHHHHHHHHHhcCHHHHHHHHH---------------------------------CHHHHHHHHHHhhHhhc
Confidence            899999999999999999999999999965                                 67788888888888899


Q ss_pred             ccccccHHHHHHHHHHHHH
Q psy2130         307 NYMQQDAHEFLNFLINHIN  325 (470)
Q Consensus       307 ~~~QqDa~E~~~~ll~~L~  325 (470)
                      .++||||+||+..|++.|+
T Consensus        48 ~~~QqDA~Efl~~lld~l~   66 (279)
T cd02667          48 GYQQQDSHELLRYLLDGLR   66 (279)
T ss_pred             CCchhhHHHHHHHHHHHHH
Confidence            9999999999999999997

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=3.1e-13  Score=124.17  Aligned_cols=103  Identities=32%  Similarity=0.442  Sum_probs=82.2

Q ss_pred             CCCccCcccCCCcchhHHHHHHHhhchHHHHHHhc--------cccccccChHHHHHHHHHHHHHHHhCCCCCCccChHH
Q psy2130         222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLE--------YKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKK  293 (470)
Q Consensus       222 ~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~--------~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~  293 (470)
                      +-.+.||.|.|||||||++||+|+++..+..++..        .+.+...+.......+..+...+-....+  .++|++
T Consensus        68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~--sis~~n  145 (415)
T COG5533          68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPK--SISPRN  145 (415)
T ss_pred             ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCc--ccchHH
Confidence            66789999999999999999999999999986543        22223333434455555555555444433  699999


Q ss_pred             HHHHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130         294 FITRLRKEKDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       294 ~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      |++.+.-.++.|....|||++||+++++|.||+
T Consensus       146 F~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHe  178 (415)
T COG5533         146 FIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHE  178 (415)
T ss_pred             HHHHHccccccccccchhhHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999

>KOG1873|consensus

Probab=99.29  E-value=4.4e-12  Score=129.00  Aligned_cols=104  Identities=27%  Similarity=0.432  Sum_probs=82.0

Q ss_pred             CCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccc---------cC----------hHHHHHHHHHHHHHHH
Q psy2130         220 PPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNK---------KN----------KETLLSCLADLFHNIA  280 (470)
Q Consensus       220 ~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~---------~~----------~~~l~~~l~~l~~~l~  280 (470)
                      +.....+||.|+|||||+||+||.|.++|.+++.|...+....         ..          ..++..+|..   .+.
T Consensus       200 ~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~---~~e  276 (877)
T KOG1873|consen  200 RRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN---LLE  276 (877)
T ss_pred             cccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh---hhh
Confidence            4456789999999999999999999999999999987655431         11          2223333333   222


Q ss_pred             hCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130         281 THKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       281 ~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      ........+.|+.|...+....+.|..+.|||+||++..||+.|..
T Consensus       277 ~~e~~ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~  322 (877)
T KOG1873|consen  277 MSETTKSVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRS  322 (877)
T ss_pred             hhhccCCccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhH
Confidence            2334567999999999999999999999999999999999999876

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=1.3e-11  Score=120.37  Aligned_cols=104  Identities=33%  Similarity=0.514  Sum_probs=88.9

Q ss_pred             CCccCcccCCCcchhHHHHHHHhhchHHHHHHhc----cccccccChHHHHHHHHHHHHHHHhCC--CCCCccChHHHHH
Q psy2130         223 ERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLE----YKAKNKKNKETLLSCLADLFHNIATHK--KKVGSIAPKKFIT  296 (470)
Q Consensus       223 ~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~----~~~~~~~~~~~l~~~l~~l~~~l~~~~--~~~~~~~p~~~~~  296 (470)
                      ..++||+|+||+||++|+||.|+....+...+..    +..--..+.+.+.+++.++...|...+  .....+.|..|+.
T Consensus       301 s~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~  380 (749)
T COG5207         301 SPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKM  380 (749)
T ss_pred             CCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHH
Confidence            3499999999999999999999998777665443    222345678889999999999887766  4457899999999


Q ss_pred             HHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130         297 RLRKEKDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       297 ~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      .++..++.|....||||+||+.+||+.|..
T Consensus       381 ~igq~h~eFg~~~QQDA~EFLlfLL~kirk  410 (749)
T COG5207         381 LIGQDHPEFGKFAQQDAHEFLLFLLEKIRK  410 (749)
T ss_pred             HHcCCchhhhhhhhhhHHHHHHHHHHHHhh
Confidence            999999999999999999999999999987

>cd02662 Peptidase_C19F A subfamily of Peptidase C19

Probab=99.23  E-value=7.2e-12  Score=118.05  Aligned_cols=49  Identities=47%  Similarity=0.720  Sum_probs=45.7

Q ss_pred             CcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCC
Q psy2130         227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFD  306 (470)
Q Consensus       227 GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~  306 (470)
                      ||.|+||||||||+||+|+++|+||+++....                                                
T Consensus         1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------   32 (240)
T cd02662           1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------   32 (240)
T ss_pred             CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence            89999999999999999999999999986532                                                


Q ss_pred             ccccccHHHHHHHHHHHHH
Q psy2130         307 NYMQQDAHEFLNFLINHIN  325 (470)
Q Consensus       307 ~~~QqDa~E~~~~ll~~L~  325 (470)
                        +||||+||+..|++.|+
T Consensus        33 --~QqDa~EFl~~ll~~l~   49 (240)
T cd02662          33 --EQQDAHELFQVLLETLE   49 (240)
T ss_pred             --hhcCHHHHHHHHHHHHH
Confidence              89999999999999998

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1864|consensus

Probab=99.21  E-value=5.4e-11  Score=123.33  Aligned_cols=105  Identities=60%  Similarity=0.969  Sum_probs=91.5

Q ss_pred             CCCccCcccCCCcchhH--HHHHHHhhchHHHHHHhcccccccc---ChHHHHHHHHHHHHHHHhCCCCCCccChHHHHH
Q psy2130         222 NERYFGLVNFGNTCYSN--SVLQALYFCKPFRDRVLEYKAKNKK---NKETLLSCLADLFHNIATHKKKVGSIAPKKFIT  296 (470)
Q Consensus       222 ~~~~~GL~N~gntCy~N--s~LQ~L~~~~~~~~~i~~~~~~~~~---~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~  296 (470)
                      +.+..|..+.+++|+.|  ++.+.+..+..+++...........   ....+...+..++............+.|..++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~  308 (587)
T KOG1864|consen  229 NERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFIS  308 (587)
T ss_pred             cccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhhh
Confidence            45677889999999999  9999999999999776655443333   477778888888888888888899999999999


Q ss_pred             HHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130         297 RLRKEKDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       297 ~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      .+++....|..+.||||+||+..+++.+.+
T Consensus       309 ~~~~~~~~f~~~~qQda~eF~~~l~~~~~e  338 (587)
T KOG1864|consen  309 DLIKENELFTNGMQQDAHEFLNFLLNEISE  338 (587)
T ss_pred             hhhhcCCccCchhhccHHHHhhhhccchhh
Confidence            999999999999999999999999999987

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1e-10  Score=119.26  Aligned_cols=100  Identities=30%  Similarity=0.533  Sum_probs=87.5

Q ss_pred             CCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhc
Q psy2130         222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKE  301 (470)
Q Consensus       222 ~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~  301 (470)
                      -.|++||.|.|.||||||+||+||.+..||+.+..+++......+.+..+||++|.+|+.....   +++.++..  .-.
T Consensus       190 eTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~grdSValaLQr~Fynlq~~~~P---vdTteltr--sfg  264 (1089)
T COG5077         190 ETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPRGRDSVALALQRLFYNLQTGEEP---VDTTELTR--SFG  264 (1089)
T ss_pred             ceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHHHhccCCC---cchHHhhh--hcC
Confidence            5699999999999999999999999999999999999999999999999999999999987765   33434332  225


Q ss_pred             cCcCCccccccHHHHHHHHHHHHHh
Q psy2130         302 KDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       302 ~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      +..+....|||.+||-..|.+.|+.
T Consensus       265 Wds~dsf~QHDiqEfnrVl~DnLEk  289 (1089)
T COG5077         265 WDSDDSFMQHDIQEFNRVLQDNLEK  289 (1089)
T ss_pred             cccchHHHHHhHHHHHHHHHHHHHH
Confidence            6677789999999999999999996

>KOG1863|consensus

Probab=99.11  E-value=1.3e-10  Score=130.10  Aligned_cols=101  Identities=29%  Similarity=0.522  Sum_probs=89.3

Q ss_pred             CCCc-cCcccCCCcchhHHHHHHHhhchHHHHHHhccc--cccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHH
Q psy2130         222 NERY-FGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYK--AKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRL  298 (470)
Q Consensus       222 ~~~~-~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~--~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l  298 (470)
                      ..++ +||.|.||||||||+||+||.++.||..+..++  .....+...+..+|+.+|..|+....+  .+++..+...+
T Consensus       166 ~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~k--~Vdt~~~~~~~  243 (1093)
T KOG1863|consen  166 LTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKRK--YVDTSELTKSL  243 (1093)
T ss_pred             cCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCCC--CcCchhhhhhh
Confidence            4455 999999999999999999999999999999998  555666777999999999999988765  78888888888


Q ss_pred             hhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130         299 RKEKDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       299 ~~~~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      ....  .....|||++||...|++.|++
T Consensus       244 ~~~~--~~~~~QqDvqEf~~~l~d~LE~  269 (1093)
T KOG1863|consen  244 GWDS--NDSFEQQDVQEFLTKLLDWLED  269 (1093)
T ss_pred             hccc--ccHHhhhhHHHHHHHHHHHHHh
Confidence            7765  6678999999999999999997

>KOG1868|consensus

Probab=99.01  E-value=9.2e-10  Score=114.71  Aligned_cols=105  Identities=36%  Similarity=0.528  Sum_probs=85.7

Q ss_pred             CCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccc------ccccChHHHHHHHHHHHHHHHhCCCCCCccChHHH
Q psy2130         221 PNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKA------KNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKF  294 (470)
Q Consensus       221 ~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~------~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~  294 (470)
                      ...+.+||.|+||+||||+++|||+.++.|++.++...-      ........+..+...++.+++..... ..+.|..|
T Consensus       297 ~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~-~s~~P~~f  375 (653)
T KOG1868|consen  297 DVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQ-FSVLPRRF  375 (653)
T ss_pred             cccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCc-eecCcHHH
Confidence            356789999999999999999999999999977765322      22334556777777777766655333 35889999


Q ss_pred             HHHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130         295 ITRLRKEKDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       295 ~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      +..+....+.|....|||++||+..+++.||+
T Consensus       376 ~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe  407 (653)
T KOG1868|consen  376 IRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHE  407 (653)
T ss_pred             HHHHhhcccccccccccchHHHHHHHHHhhhH
Confidence            99999999999998899999999999999997

>KOG2026|consensus

Probab=98.87  E-value=4e-09  Score=100.26  Aligned_cols=149  Identities=17%  Similarity=0.229  Sum_probs=104.9

Q ss_pred             hhHhhCCCCCCCCCccccccc-CCchhhhh--hhhccchHHH------------------------HHhhhcCCccc-hh
Q psy2130           7 LEKEIGPDRFPPNERYFGLVN-GKTCKEKE--DRIEKSQPFW------------------------EQTSLQDKISL-GW   58 (470)
Q Consensus         7 ~~~~~~~~~~~~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~------------------------~~~~~~~~~~~-~~   58 (470)
                      +-+.++.+.+.+  +.|||.| -++=|.|+  |+|.+.+|+.                        ..+...+..+. .+
T Consensus       121 ~~raLd~~tYLp--G~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~~d~~~~lv~rl~~l~rklw~~r~fk~hvS  198 (442)
T KOG2026|consen  121 LSRALDGSTYLP--GFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEENYFDNLTELVQRLGELIRKLWNPRNFKGHVS  198 (442)
T ss_pred             hhhhhcCCccee--eeeccchhhhHHHHHHHHHHHhccchhhhhhcccccccchhHHHHHHHHHHHHHhcChhhhcccCC
Confidence            335555555553  5999999 99999999  9999999981                        11122222122 22


Q ss_pred             hHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhcc
Q psy2130          59 ECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQG  138 (470)
Q Consensus        59 ~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g  138 (470)
                      +-++++++.......|..+.|-|+-|||.|||+.||.+++..                         ++..|+|++.|+|
T Consensus       199 phe~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~-------------------------k~~~SIi~~~fqG  253 (442)
T KOG2026|consen  199 PHEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGS-------------------------KKASSIIHKSFQG  253 (442)
T ss_pred             HHHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCC-------------------------CCchhHhhHhhcc
Confidence            226776666455678999999999999999999999988532                         2456899999999


Q ss_pred             ccccceeccc----cCCcccccCCCcccccccCCC--------------CCHHHHhccCCcc
Q psy2130         139 ILTSETKCLN----CETVSSKDEDFFDLQVDIKQN--------------TSITQCLRGFSST  182 (470)
Q Consensus       139 ~~~~~~~C~~----C~~~s~~~~~f~~Lsl~i~~~--------------~sl~~~L~~~~~~  182 (470)
                      .++...+=..    --......-+|+.|.|++|..              +.|-++|..|...
T Consensus       254 ~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~  315 (442)
T KOG2026|consen  254 EVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGE  315 (442)
T ss_pred             eEEeeeeccccccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCc
Confidence            9877654333    111245567999999999952              4667788776543

>KOG1866|consensus

Probab=98.86  E-value=4.1e-09  Score=107.58  Aligned_cols=109  Identities=30%  Similarity=0.501  Sum_probs=93.5

Q ss_pred             CCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccc----ccChHHHHHHHHHHHHHHHhCCCCCCccCh
Q psy2130         216 PDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN----KKNKETLLSCLADLFHNIATHKKKVGSIAP  291 (470)
Q Consensus       216 ~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~----~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p  291 (470)
                      .-..+...+++||+|-|+|||||+++|-++++|.++..+..+....    ....+.+++.+|.+|..+.....  .++.|
T Consensus        86 pVgsRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~l--QyyVP  163 (944)
T KOG1866|consen   86 PVGSRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQL--QYYVP  163 (944)
T ss_pred             CcCCCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhh--hhhcc
Confidence            3345667899999999999999999999999999999877654432    22244599999999999987654  48899


Q ss_pred             HHHHHHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130         292 KKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       292 ~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      ..+++..+.........+||||-|||..|++.+++
T Consensus       164 eg~Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De  198 (944)
T KOG1866|consen  164 EGFWKQFRLWGEPLNLREQHDALEFFNSLLDSLDE  198 (944)
T ss_pred             hhHHHHhhccCCccchHhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999997

>KOG1871|consensus

Probab=98.68  E-value=3e-08  Score=94.80  Aligned_cols=110  Identities=25%  Similarity=0.342  Sum_probs=77.2

Q ss_pred             CCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccc---cccChHHHHHHHHHHHHHHHhCCC------------
Q psy2130         220 PPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAK---NKKNKETLLSCLADLFHNIATHKK------------  284 (470)
Q Consensus       220 ~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~---~~~~~~~l~~~l~~l~~~l~~~~~------------  284 (470)
                      |..-.++|++|-+|.||||++||+|..|++|.+.+...+..   ......+++.++..+..+......            
T Consensus        23 p~~i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~  102 (420)
T KOG1871|consen   23 PVPIDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVP  102 (420)
T ss_pred             ccccCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCcc
Confidence            34478999999999999999999999999999988765522   234466777777766665542211            


Q ss_pred             --------------CCCccChHHHHHHH-hh-ccCcCCccccccHHHHHHHHHHHHHhhhh
Q psy2130         285 --------------KVGSIAPKKFITRL-RK-EKDEFDNYMQQDAHEFLNFLINHINEKCM  329 (470)
Q Consensus       285 --------------~~~~~~p~~~~~~l-~~-~~~~~~~~~QqDa~E~~~~ll~~L~~~~~  329 (470)
                                    ...++.|..+...+ .+ .......+.|.||+||+..+++.||+...
T Consensus       103 ~~~~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~  163 (420)
T KOG1871|consen  103 EHVVEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESS  163 (420)
T ss_pred             ccccchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHH
Confidence                          12233343333333 33 23444579999999999999999998444

>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase

Probab=98.66  E-value=7.1e-08  Score=93.90  Aligned_cols=100  Identities=27%  Similarity=0.329  Sum_probs=85.4

Q ss_pred             cCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcC
Q psy2130         226 FGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEF  305 (470)
Q Consensus       226 ~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~  305 (470)
                      .||.|.+++||+||+||+|+++|++|+.++.+.  ......++.+.|.=||+.|... .......+..+.++++......
T Consensus         1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~--~c~~e~cL~cELgfLf~ml~~~-~~g~~cq~sNflr~l~~~~~a~   77 (295)
T PF13423_consen    1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL--ECPKEFCLLCELGFLFDMLDSK-AKGINCQASNFLRALSWIPEAA   77 (295)
T ss_pred             CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc--CCCccccHHHHHHHHHHHhhhh-cCCCcChHHHHHHHHhcCHHHH
Confidence            499999999999999999999999999999988  5677889999999999999833 3344677888999888876545


Q ss_pred             CccccccHHHHHHHHHHHHHhhh
Q psy2130         306 DNYMQQDAHEFLNFLINHINEKC  328 (470)
Q Consensus       306 ~~~~QqDa~E~~~~ll~~L~~~~  328 (470)
                      ..+.|+|+.+++.+|++.|+...
T Consensus        78 ~l~~~~~iq~~~~Fll~~l~~~~  100 (295)
T PF13423_consen   78 ALGLQQDIQSLNRFLLEQLSMEL  100 (295)
T ss_pred             hcchhHHHHHHHHHHHHHHhHHH
Confidence            56679999999999999999733

>KOG1867|consensus

Probab=98.56  E-value=7.4e-08  Score=98.58  Aligned_cols=105  Identities=27%  Similarity=0.402  Sum_probs=91.4

Q ss_pred             CCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccc---cccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHH
Q psy2130         222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAK---NKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRL  298 (470)
Q Consensus       222 ~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~---~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l  298 (470)
                      .-+..||.|+|+||+||+++|+|.+.+..+...+.....   ......++...+.+++..+++... ...+.|..+....
T Consensus       158 ~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~-~~~~sp~~~l~~~  236 (492)
T KOG1867|consen  158 ALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHN-RTPYSPFELLNLV  236 (492)
T ss_pred             eecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCC-CCCcChHHHHHHH
Confidence            457899999999999999999999999988887764333   233377899999999999999886 5688999999999


Q ss_pred             hhccCcCCccccccHHHHHHHHHHHHHhh
Q psy2130         299 RKEKDEFDNYMQQDAHEFLNFLINHINEK  327 (470)
Q Consensus       299 ~~~~~~~~~~~QqDa~E~~~~ll~~L~~~  327 (470)
                      ++..+.+.+.+|||++||+..+++.++..
T Consensus       237 ~k~~~~~~g~~Qqda~eF~~~~~~~~~~~  265 (492)
T KOG1867|consen  237 WKHSPNLAGYEQQDAHEFLIALLDRLHRE  265 (492)
T ss_pred             HHhCcccccccccchHHHHHHhccccccc
Confidence            99999999999999999999999999863

>cd02674 Peptidase_C19R A subfamily of peptidase C19

Probab=98.54  E-value=5.2e-08  Score=91.19  Aligned_cols=20  Identities=65%  Similarity=1.021  Sum_probs=19.1

Q ss_pred             CcccCCCcchhHHHHHHHhh
Q psy2130         227 GLVNFGNTCYSNSVLQALYF  246 (470)
Q Consensus       227 GL~N~gntCy~Ns~LQ~L~~  246 (470)
                      ||.|+||+||+||+||+|++
T Consensus         1 gl~n~~~~cy~n~~~Q~l~~   20 (230)
T cd02674           1 GLRNLGNTCYMNSILQCLSA   20 (230)
T ss_pred             CccccCcchhhhHHHHHHHH
Confidence            89999999999999999976

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1872|consensus

Probab=98.53  E-value=3.9e-08  Score=96.45  Aligned_cols=123  Identities=19%  Similarity=0.165  Sum_probs=87.9

Q ss_pred             Cccccccc-CCchhhhh--hhhccchHH------------------------------HHHhhhcCCccchhhHHHHHHh
Q psy2130          20 ERYFGLVN-GKTCKEKE--DRIEKSQPF------------------------------WEQTSLQDKISLGWECSLILEL   66 (470)
Q Consensus        20 ~~~~GL~N-GNtCy~Ns--Q~L~~~~~f------------------------------~~~~~~~~~~~~~~~~~~~~~l   66 (470)
                      .-++|+.| |||||||+  |||-..+++                              |+.+...   ....+-.++..+
T Consensus       103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~---~~v~pi~llqtl  179 (473)
T KOG1872|consen  103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK---GAVAPINLLQTL  179 (473)
T ss_pred             cCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc---CCcchHHHHHHH
Confidence            34679999 99999999  999888877                              2222222   223333666777


Q ss_pred             hcccCCCCCC------cccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhcccc
Q psy2130          67 DLCSSDEFDN------YMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGIL  140 (470)
Q Consensus        67 ~~~~~~~f~~------~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~  140 (470)
                      . +..|+|.-      +.||||.|+...++..+++.+.....                      .......+...|+.++
T Consensus       180 ~-~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~----------------------~~~~~~~~d~~f~~~~  236 (473)
T KOG1872|consen  180 S-SQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATE----------------------APCLEAEAAAGFGAEF  236 (473)
T ss_pred             H-HHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccc----------------------ccchhHHHHHhhcccc
Confidence            7 66677755      79999999999999999985431110                      0145677899999999


Q ss_pred             ccceeccccCCcccc--cCCCcccccccCC
Q psy2130         141 TSETKCLNCETVSSK--DEDFFDLQVDIKQ  168 (470)
Q Consensus       141 ~~~~~C~~C~~~s~~--~~~f~~Lsl~i~~  168 (470)
                      ..+..|..-......  .|.|..|+.-+-+
T Consensus       237 ~~t~~~~e~e~~~~~~~~E~~~~L~c~i~~  266 (473)
T KOG1872|consen  237 STTMSCSEGEDEGGGAGRELVDQLKCIINK  266 (473)
T ss_pred             ccceeeccCcccccccccccccccceEEee
Confidence            999999987666433  6777777766654

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19

Probab=98.42  E-value=1.7e-07  Score=88.21  Aligned_cols=48  Identities=56%  Similarity=0.769  Sum_probs=42.6

Q ss_pred             cccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCc
Q psy2130         228 LVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDN  307 (470)
Q Consensus       228 L~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~  307 (470)
                      |.|.||.||+|+++|+|..                                                   +++..+.|.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~---------------------------------------------------i~~~~~~F~~   30 (245)
T cd02673           2 LVNTGNSCYFNSTMQALSS---------------------------------------------------IGKINTEFDN   30 (245)
T ss_pred             ceecCCeeeehhHHHHHHH---------------------------------------------------HhhhhhhcCC
Confidence            6899999999999998744                                                   4556778899


Q ss_pred             cccccHHHHHHHHHHHHHh
Q psy2130         308 YMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       308 ~~QqDa~E~~~~ll~~L~~  326 (470)
                      +.||||+||+..|++.|++
T Consensus        31 ~~QQDAhEFL~~LLd~l~~   49 (245)
T cd02673          31 DDQQDAHEFLLTLLEAIDD   49 (245)
T ss_pred             CchhhHHHHHHHHHHHHHH
Confidence            9999999999999999986

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1870|consensus

Probab=98.40  E-value=4.3e-07  Score=99.64  Aligned_cols=111  Identities=32%  Similarity=0.442  Sum_probs=93.9

Q ss_pred             CCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccc-------ccChHHHHHHHHHHHHHHHhCCCCCCc
Q psy2130         216 PDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN-------KKNKETLLSCLADLFHNIATHKKKVGS  288 (470)
Q Consensus       216 ~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~-------~~~~~~l~~~l~~l~~~l~~~~~~~~~  288 (470)
                      ..+.+...|.+||.|+|||||||+.+|+|...++++++++......       ......+......+...++.....  .
T Consensus       237 ~~~~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~--~  314 (842)
T KOG1870|consen  237 EISSPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKS--A  314 (842)
T ss_pred             cccCCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCcc--c
Confidence            3345667899999999999999999999999999999998633222       233556777888888888888773  8


Q ss_pred             cChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhh
Q psy2130         289 IAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKC  328 (470)
Q Consensus       289 ~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~  328 (470)
                      +.|..+...+....+.+.+..|+|.+||+-++++.+|+.-
T Consensus       315 v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl  354 (842)
T KOG1870|consen  315 VAPTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDL  354 (842)
T ss_pred             cCchhhhhhhhhccccccCcccccchhhhhHHhhhhhHHh
Confidence            9999999999999999999999999999999999999833

>cd02665 Peptidase_C19I A subfamily of Peptidase C19

Probab=98.28  E-value=5.8e-07  Score=83.16  Aligned_cols=20  Identities=50%  Similarity=0.946  Sum_probs=18.6

Q ss_pred             CcccCCCcchhHHHHHHHhh
Q psy2130         227 GLVNFGNTCYSNSVLQALYF  246 (470)
Q Consensus       227 GL~N~gntCy~Ns~LQ~L~~  246 (470)
                      ||.|.|||||+|++.|+|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~   20 (228)
T cd02665           1 GLKNVGNTCWFSAVIQSLFS   20 (228)
T ss_pred             CccccCcchhHHHHHHHHHH
Confidence            89999999999999999865

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases

Probab=98.25  E-value=6.7e-07  Score=83.94  Aligned_cols=20  Identities=75%  Similarity=1.150  Sum_probs=19.3

Q ss_pred             CcccCCCcchhHHHHHHHhh
Q psy2130         227 GLVNFGNTCYSNSVLQALYF  246 (470)
Q Consensus       227 GL~N~gntCy~Ns~LQ~L~~  246 (470)
                      ||.|.||+||+||+||+|++
T Consensus         1 Gl~N~~n~Cy~ns~lq~l~~   20 (255)
T cd02257           1 GLNNLGNTCYLNSVLQALFS   20 (255)
T ss_pred             CccccCcchHHhHHHHHHHH
Confidence            89999999999999999987

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG3556|consensus

Probab=98.02  E-value=1.5e-06  Score=85.79  Aligned_cols=126  Identities=18%  Similarity=0.220  Sum_probs=78.9

Q ss_pred             CCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCC----CccChHHHHHH
Q psy2130         222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKV----GSIAPKKFITR  297 (470)
Q Consensus       222 ~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~----~~~~p~~~~~~  297 (470)
                      -..+.|++..-|.||+||.+..++.-....+.++--.....  ...-...++.+++.....+.+.    .......++..
T Consensus       365 ~gk~kgiqgh~nscyldstlf~~f~f~sv~dS~l~rrp~p~--d~~nYse~q~~LRseiVnplr~n~fVr~~~~mklR~~  442 (724)
T KOG3556|consen  365 EGKIKGIQGHPNSCYLDSTLFKPFEFDSVTDSTLPRRPPPS--DSMNYSEMQHSLRSEIVNPLRRNQFVRQNPAMKLRVE  442 (724)
T ss_pred             hcccccccCCcchhhccccccccccccccccccccCCCCcc--cccccHHHHHHHHHhhhchhhhcceeecCHHHHHHHH
Confidence            44678999999999999999999887777766653222211  1112223334444333333222    22222233333


Q ss_pred             HhhccCcC-CccccccHHHHHHHHHHHHHh-----------------------------------------hhhhhcCCC
Q psy2130         298 LRKEKDEF-DNYMQQDAHEFLNFLINHINE-----------------------------------------KCMKVKKLP  335 (470)
Q Consensus       298 l~~~~~~~-~~~~QqDa~E~~~~ll~~L~~-----------------------------------------~~~~i~~lP  335 (470)
                      +..++... ...+..|++||++.++..+-.                                         ..++++..|
T Consensus       443 ldql~~~sG~tceekdpEEFLn~l~t~i~rVEp~lkisaGqd~yfyQlFleKdekv~~p~~qqL~e~sf~sS~ik~~e~p  522 (724)
T KOG3556|consen  443 LDQLNFRSGDTCEEKDPEEFLNGLKTLIARVEPKLKISAGQDVYFYQLFLEKDEKVGHPGFQQLSELSFPSSSIKSTETP  522 (724)
T ss_pred             HHhhhccccCcccccCHHHHHHHHHHHhcccceeeeeccCCchhhhhhhhhcccccCCchHHHHhhhhccccccccccCc
Confidence            33333322 367789999999999888766                                         445678899


Q ss_pred             ceEEEEeeeeeeec
Q psy2130         336 MILALHLKRFKYMD  349 (470)
Q Consensus       336 ~~L~i~l~R~~~~~  349 (470)
                      ..++|+..||.-+.
T Consensus       523 Sc~iiqmprfgk~~  536 (724)
T KOG3556|consen  523 SCQIIQMPRFGKSQ  536 (724)
T ss_pred             chhheeccccCccc
Confidence            99999999997543

>cd02672 Peptidase_C19P A subfamily of Peptidase C19

Probab=97.62  E-value=5.5e-05  Score=72.24  Aligned_cols=53  Identities=38%  Similarity=0.504  Sum_probs=44.7

Q ss_pred             CCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHH
Q psy2130         223 ERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLF  276 (470)
Q Consensus       223 ~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~  276 (470)
                      .++.||.|.|.+||+|++||+|+++|+||+. +...........+++.+|.-||
T Consensus        13 t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~-~~~~~~~~~~~~~l~~el~~lf   65 (268)
T cd02672          13 TNYAGLENHITNSYCNSLLQLLYFIPPFRNF-TAIILVACPKESCLLCELGYLF   65 (268)
T ss_pred             ccccccccCCccchHHHHHHHHHhcHHHHHH-HHhhcccCCcCccHHHHHHHHH
Confidence            4699999999999999999999999999998 4444444556778888888888

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase

Probab=97.52  E-value=0.0016  Score=59.66  Aligned_cols=37  Identities=19%  Similarity=0.428  Sum_probs=30.4

Q ss_pred             CCcceEEEEEEEeecCCCCCcEEEEEEec-CCcEEEEeCcc
Q psy2130         379 PDRMYNLVAVVIHCGSGPNRGHYISIVKS-HDFWLLFDDDV  418 (470)
Q Consensus       379 ~~~~Y~L~avV~H~G~~~~~GHY~a~vr~-~~~W~~~nD~~  418 (470)
                      +...|++.+||-+.-.   --|+++++++ +|.|.+|||-+
T Consensus       215 eg~~Y~Vt~VIQY~~~---~~HFvtWi~~~dGsWLecDDLk  252 (275)
T PF15499_consen  215 EGCLYQVTSVIQYQAN---LNHFVTWIRDSDGSWLECDDLK  252 (275)
T ss_pred             cCeeEEEEEEEEEecc---CceeEEEEEcCCCCeEeeccCC
Confidence            3467999999998653   4599999996 68999999964

>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.43  E-value=0.00045  Score=59.79  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=26.3

Q ss_pred             EEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceeeechh
Q psy2130         386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQS  425 (470)
Q Consensus       386 ~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~  425 (470)
                      .+.|.-.|    .||.+.+.+..+.||.+||+.+.+-.+.
T Consensus       130 ~agi~~~g----~~Havfa~~ts~gWy~iDDe~~y~~tPd  165 (193)
T PF05408_consen  130 HAGIFLKG----QEHAVFACVTSDGWYAIDDEDFYPWTPD  165 (193)
T ss_dssp             EEEEEEES----TTEEEEEEEETTCEEEEETTEEEE----
T ss_pred             hhHheecC----CcceEEEEEeeCcEEEecCCeeeeCCCC
Confidence            34444444    5799999999999999999999986553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.

>KOG1887|consensus

Probab=96.89  E-value=0.00014  Score=76.38  Aligned_cols=114  Identities=18%  Similarity=0.295  Sum_probs=76.2

Q ss_pred             hhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEe
Q psy2130         327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVK  406 (470)
Q Consensus       327 ~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr  406 (470)
                      ....|.++|++++|.+..-....   ...--.+...+..++|++..-..+..+...|+|+++|+-+..   .++|.|+..
T Consensus       674 v~h~is~~P~vftIvlewEk~ET---e~eI~~T~~aL~teidis~~y~~g~ep~t~yrLVSmv~~~e~---~~~~~C~Ay  747 (806)
T KOG1887|consen  674 VHHILSPCPPVFTIVLEWEKSET---EKEISETTKALATEIDISRLYREGLEPNTKYRLVSMVGNHEE---GEEYICFAY  747 (806)
T ss_pred             hhhhcCCCCCeeEeeeehhcccc---hHHHHHHHHHHHhhhhHHHHhhhccCcCceeEEEEEeeeccc---cceEEEeec
Confidence            34566789999999554321110   001112223445566665443345567789999999986632   569999999


Q ss_pred             cCCcEE--EEeCcceeee-chhhhhhhcCCCCCCCCCCCcEEEEEEEec
Q psy2130         407 SHDFWL--LFDDDVVDKI-DQSTIEDFFGLTSDHQKSSETGYILFYQSR  452 (470)
Q Consensus       407 ~~~~W~--~~nD~~V~~v-~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~  452 (470)
                      .++.|+  ..+|..+..| +|.+|..++|.      .+-.+-||||+.+
T Consensus       748 e~Nrwvs~r~~~~~~e~iG~w~dvvr~c~e------~~vrpeil~ye~~  790 (806)
T KOG1887|consen  748 EPNRWVSLRHEDSQGEVVGDWKDVVRFCGE------RKVRPEILFYEAQ  790 (806)
T ss_pred             cCCcchhhHHHHHHhhhccchHHHHHHHhc------ccccHHHHHHHHH
Confidence            988888  9999877766 57788888874      3456888888764

>cd02670 Peptidase_C19N A subfamily of Peptidase C19

Probab=96.79  E-value=0.0012  Score=61.74  Aligned_cols=20  Identities=35%  Similarity=0.710  Sum_probs=18.3

Q ss_pred             CcccCCC-cchhHHHHHHHhh
Q psy2130         227 GLVNFGN-TCYSNSVLQALYF  246 (470)
Q Consensus       227 GL~N~gn-tCy~Ns~LQ~L~~  246 (470)
                      |+.|+.| +||+.|+|-+||+
T Consensus         1 g~~~~~~~~cy~d~~~~~~f~   21 (241)
T cd02670           1 GAQNHCNVSCYLDALLFAMFA   21 (241)
T ss_pred             CCccccCceeehHHHHHHHHH
Confidence            7899999 9999999998865

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG4598|consensus

Probab=94.99  E-value=0.016  Score=60.00  Aligned_cols=76  Identities=17%  Similarity=0.238  Sum_probs=54.5

Q ss_pred             CCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhc
Q psy2130         222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKE  301 (470)
Q Consensus       222 ~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~  301 (470)
                      ..|++||.|..-+||+|+.+|+|+..|.+++.+.-.+..                           ++....+.+.+  .
T Consensus        84 ~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~~~---------------------------~~et~dlt~sf--g  134 (1203)
T KOG4598|consen   84 GHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSEND---------------------------SLETKDLTQSF--G  134 (1203)
T ss_pred             CcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCCcc---------------------------cccchhhHhhc--C
Confidence            468999999999999999999999999999988632211                           11111111111  2


Q ss_pred             cCcCCccccccHHHHHHHHHHHHHh
Q psy2130         302 KDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       302 ~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      +..-+.++|||.+|+-...++.|+-
T Consensus       135 w~s~ea~~qhdiqelcr~mfdaleh  159 (1203)
T KOG4598|consen  135 WTSNEAYDQHDVQELCRLMFDALEH  159 (1203)
T ss_pred             CCcchhhhhhhHHHHHHHHHHHHHh
Confidence            2333568899999999999998875

>KOG1275|consensus

Probab=91.93  E-value=0.4  Score=51.80  Aligned_cols=74  Identities=27%  Similarity=0.380  Sum_probs=60.8

Q ss_pred             CCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhh
Q psy2130         222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRK  300 (470)
Q Consensus       222 ~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~  300 (470)
                      +.-+.||.-.+..-|.||+||.|+.+|++|..++.+   ......++++.|.=||..+......  ......|..+++.
T Consensus       496 qT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H---~C~~e~CL~CELGFLF~Ml~~S~G~--~Cqa~NFlraf~t  569 (1118)
T KOG1275|consen  496 QTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRH---ICTKEFCLLCELGFLFTMLDSSTGD--PCQANNFLRAFRT  569 (1118)
T ss_pred             cceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcC---ccchhHHHHHHHHHHHHHHhhhcCC--ccchhHHHHHHhh
Confidence            446788888888999999999999999999999988   4566788999999999998876655  5666677766655

>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein

Probab=91.41  E-value=1.2  Score=43.47  Aligned_cols=74  Identities=18%  Similarity=0.178  Sum_probs=37.0

Q ss_pred             CCccCcccCCCcchhHHHHHHHhhc------hHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHH
Q psy2130         223 ERYFGLVNFGNTCYSNSVLQALYFC------KPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFIT  296 (470)
Q Consensus       223 ~~~~GL~N~gntCy~Ns~LQ~L~~~------~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~  296 (470)
                      .|++=|.=.-|.||+||++=+|=+.      |.+.+....+.                             ..+|..|..
T Consensus       100 ~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~~l~~aw~~f~-----------------------------~G~~~~fVa  150 (320)
T PF08715_consen  100 NGFRVLKQSDNNCWVNAACLQLQALKIKFKSPGLDEAWNEFK-----------------------------AGDPAPFVA  150 (320)
T ss_dssp             TTEEEE---TTTHHHHHHHHHHTTST--BSSHHHHHHHHHHH-----------------------------TT--HHHHH
T ss_pred             CCEEEEEecCCCcHHHHHHHHHHhcCCccCCHHHHHHHHHHh-----------------------------CCChHHHHH
Confidence            3556666677999999976544332      22222222222                             344555554


Q ss_pred             HHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130         297 RLRKEKDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       297 ~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      .+=. ......++-.||++++..|++.++.
T Consensus       151 ~~Ya-~~~~~~G~~gDa~~~L~~ll~~~~~  179 (320)
T PF08715_consen  151 WCYA-STNAKKGDPGDAEYVLSKLLKDADL  179 (320)
T ss_dssp             HHHH-HTT--TTS---HHHHHHHHHTTB-T
T ss_pred             HHHH-HcCCCCCCCcCHHHHHHHHHHhccc
Confidence            4422 2223367789999999999987663

The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	470
3mtn_A	373	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		1e-09
3mtn_A	373	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		5e-04
3i3t_A	355	Crystal Structure Of Covalent Ubiquitin-usp21 Compl		1e-09
3i3t_A	355	Crystal Structure Of Covalent Ubiquitin-usp21 Compl		5e-04
2y6e_A	367	Ubiquitin Specific Protease 4 Is Inhibited By Its U		1e-09
2y6e_A	367	Ubiquitin Specific Protease 4 Is Inhibited By Its U		2e-05
2y5b_A	370	Structure Of Usp21 In Complex With Linear Diubiquit		1e-09
2y5b_A	370	Structure Of Usp21 In Complex With Linear Diubiquit		6e-04
3mhh_A	476	Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE		1e-09
3mhh_A	476	Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE		6e-05
3mhh_A	476	Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE		1e-04
3m99_A	471	Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod		1e-09
3m99_A	471	Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod		6e-05
3m99_A	471	Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod		1e-04
4fip_A	476	Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-		2e-09
4fip_A	476	Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-		2e-05
4fip_A	476	Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-		1e-04
2ibi_A	374	Covalent Ubiquitin-Usp2 Complex Length = 374		5e-09
3v6c_A	367	Crystal Structure Of Usp2 In Complex With Mutated U		6e-09
2hd5_A	359	Usp2 In Complex With Ubiquitin Length = 359		7e-09
3nhe_A	348	High Resolution Structure (1.26a) Of Usp2a In Compl		1e-07
3n3k_A	396	The Catalytic Domain Of Usp8 In Complex With A Usp8		4e-07
3n3k_A	396	The Catalytic Domain Of Usp8 In Complex With A Usp8		2e-04
3ihp_A	854	Covalent Ubiquitin-Usp5 Complex Length = 854		4e-07
2gfo_A	396	Structure Of The Catalytic Domain Of Human Ubiquiti		5e-07
2gfo_A	396	Structure Of The Catalytic Domain Of Human Ubiquiti		1e-04
2f1z_A	522	Crystal Structure Of Hausp Length = 522		2e-06
2f1z_A	522	Crystal Structure Of Hausp Length = 522		2e-04
1nbf_A	353	Crystal Structure Of A Ubp-Family Deubiquitinating		3e-06
1nbf_A	353	Crystal Structure Of A Ubp-Family Deubiquitinating		3e-04
1nb8_A	353	Structure Of The Catalytic Domain Of Usp7 (Hausp) L		1e-05
1nb8_A	353	Structure Of The Catalytic Domain Of Usp7 (Hausp) L		1e-04
2ayn_A	404	Structure Of Usp14, A Proteasome-Associated Deubiqu		2e-04
1vjv_A	415	Crystal Structure Of Ubiquitin Carboxyl-terminal Hy		3e-04

>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRD----RVLEYKAKNKKNKETLLSCLADLFHNIA 280
           + GL N GNTC+ N+VLQ L   +P RD    R    +       + L    AD+   + 
Sbjct: 22  HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGAL- 80
Query: 281 THKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHIN-EKCMKVKKLPMILA 339
            H     ++ P +F    +K    F  Y QQDA EFL  L+  ++ E   + ++ P ILA
Sbjct: 81  WHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILA 140

>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLE-LRLFHL-SDDAVNPDRMYN 384
           K + V++ P IL LHL RF       +   V   V FPL+ L L    SD A +P  +Y 
Sbjct: 259 KKLTVQRFPRILVLHLNRFSASRGSIKKSSVG--VDFPLQRLSLGDFASDKAGSP--VYQ 314
Query: 385 LVAVVIHCGSGPNRGHYISIVKSHXXXXXXXXXXXXKIDQSTIEDFFGLTSDHQKSSETG 444
           L A+  H GS  + GHY ++ +               +            S++Q +S  G
Sbjct: 315 LYALCNHSGS-VHYGHYTALCRCQTGWHVYNDSRVSPV------------SENQVASSEG 361
Query: 445 YILFYQ 450
           Y+LFYQ
Sbjct: 362 YVLFYQ 367

>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRD----RVLEYKAKNKKNKETLLSCLADLFHNIA 280
           + GL N GNTC+ N+VLQ L   +P RD    R    +       + L    AD+   + 
Sbjct: 3   HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGAL- 61
Query: 281 THKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHIN-EKCMKVKKLPMILA 339
            H     ++ P +F    +K    F  Y QQDA EFL  L+  ++ E   + ++ P ILA
Sbjct: 62  WHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILA 121

>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLE-LRLFHL-SDDAVNPDRMYN 384
           K + V++ P IL LHL RF       +   V   V FPL+ L L    SD A +P  +Y 
Sbjct: 240 KKLTVQRFPRILVLHLNRFSASRGSIKKSSVG--VDFPLQRLSLGDFASDKAGSP--VYQ 295
Query: 385 LVAVVIHCGSGPNRGHYISIVKSHXXXXXXXXXXXXKIDQSTIEDFFGLTSDHQKSSETG 444
           L A+  H GS  + GHY ++ +               +            S++Q +S  G
Sbjct: 296 LYALCNHSGS-VHYGHYTALCRCQTGWHVYNDSRVSPV------------SENQVASSEG 342
Query: 445 YILFYQ 450
           Y+LFYQ
Sbjct: 343 YVLFYQ 348

>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKV 286
           GL N GNT + NS LQ L    P  D  L+ + + + N++  L    ++    A   K++
Sbjct: 10  GLGNLGNTXFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQM 69
Query: 287 GS-----IAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMI 337
            S     +AP+ F T++ +   +F  Y QQD+ E L FL++ ++E   +VKK P +
Sbjct: 70  WSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYL 125

>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 334 LPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDR---MYNLVAVVI 390
           LP IL +HLKRF Y    NR+ +     V    +R  ++S+   N      +Y+L+AV  
Sbjct: 252 LPKILVVHLKRFSY----NRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSN 307
Query: 391 HCGSGPNRGHYISIVKSHXXXXXXXXXXXXKIDQSTIEDFFGLTSDHQKSSETGYILFYQ 450
           H G+    GHY +  K+               D S +     L S+ Q  ++  Y+LFYQ
Sbjct: 308 HYGAM-GVGHYTAYAKNKLNGKWYY------FDDSNVS----LASEDQIVTKAAYVLFYQ 356
Query: 451 SRD 453
            RD
Sbjct: 357 RRD 359

>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRD----RVLEYKAKNKKNKETLLSCLADLFHNIA 280
           + GL N GNTC+ N+VLQ L   +P RD    R    +       + L    AD+   + 
Sbjct: 16  HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGAL- 74
Query: 281 THKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHIN-EKCMKVKKLPMILA 339
            H     ++ P +F    +K    F  Y QQDA EFL  L+  ++ E   + ++ P ILA
Sbjct: 75  WHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILA 134

>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLE-LRLFHL-SDDAVNPDRMYN 384
           K + V++ P IL LHL RF       +   V   V FPL+ L L    SD A +P  +Y 
Sbjct: 253 KKLTVQRFPRILVLHLNRFSASRGSIKKSSVG--VDFPLQRLSLGDFASDKAGSP--VYQ 308
Query: 385 LVAVVIHCGSGPNRGHYISIVKSHXXXXXXXXXXXXKIDQSTIEDFFGLTSDHQKSSETG 444
           L A+  H GS  + GHY ++ +               +            S++Q +S  G
Sbjct: 309 LYALCNHSGS-VHYGHYTALCRCQTGWHVYNDSRVSPV------------SENQVASSEG 355
Query: 445 YILFYQ 450
           Y+LFYQ
Sbjct: 356 YVLFYQ 361

>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 23/145 (15%)
Query: 77  YMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPXXXXXXXXXXXXFEEPTWVHEIF 136
           Y QQDAHEF  F+IN I++  + + P +   S+ +               +    VH +F
Sbjct: 238 YSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNK-------------QCECIVHTVF 284
Query: 137 QGILTSETKCLNCETVSSKDED-FFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDN 195
           +G L S   C  C+  S    D F DL +DIK    + +CL  F   E L  D  + C  
Sbjct: 285 EGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQL-KDFNYHCGE 343
Query: 196 CASYQEAQGPNISALEKEIGPDRFP 220
           C S Q+A         K++G  + P
Sbjct: 344 CNSTQDAI--------KQLGIHKLP 360

>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 227 GLVNFGNTCYSNSVLQAL----YFCKPFRDRVLEYKAKNKKNKETLLSCLAD-----LFH 277
           GL+N G+TC+ +S+LQ L    YF +    ++     K  ++ +   SC  D     L+ 
Sbjct: 143 GLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCK-VRSPDKCFSCALDKIVHELYG 201
Query: 278 NIATHKKKVGSIAPKK------FITRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326
            + T +    S +  +       +T   K       Y QQDAHEF  F+IN I++
Sbjct: 202 ALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQ 256

>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 24/134 (17%)
Query: 329 MKVKKLPMILALHLKRFKY-MDKMNRHVKVSHRVVFPLELRLFHL---------SDDAVN 378
           + + KLP +L L LKRF++ ++  NR  K+   + FP  L + +          S++   
Sbjct: 354 LGIHKLPSVLVLQLKRFEHLLNGSNR--KLDDFIEFPTYLNMKNYCSTKEKDKHSENGKV 411
Query: 379 PDRMYNLVAVVIHCGSGPNRGHYISIVKSHXXXXXXXXXXXXKIDQSTIEDFFGLTSDHQ 438
           PD +Y L+ +V H G+  N GHYI+  K              K + S +       S  +
Sbjct: 412 PDIIYELIGIVSHKGT-VNEGHYIAFCK-------ISGGQWFKFNDSMVSSI----SQEE 459
Query: 439 KSSETGYILFYQSR 452
              E  Y+LFY  R
Sbjct: 460 VLKEQAYLLFYTIR 473

>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 23/145 (15%)
Query: 77  YMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPXXXXXXXXXXXXFEEPTWVHEIF 136
           Y QQDAHEF  F+IN I++  + + P +   S+ +               +    VH +F
Sbjct: 233 YSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNK-------------QCECIVHTVF 279
Query: 137 QGILTSETKCLNCETVSSKDED-FFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDN 195
           +G L S   C  C+  S    D F DL +DIK    + +CL  F   E L  D  + C  
Sbjct: 280 EGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQL-KDFNYHCGE 338
Query: 196 CASYQEAQGPNISALEKEIGPDRFP 220
           C S Q+A         K++G  + P
Sbjct: 339 CNSTQDAI--------KQLGIHKLP 355

>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 227 GLVNFGNTCYSNSVLQAL----YFCKPFRDRVLEYKAKNKKNKETLLSCLAD-----LFH 277
           GL+N G+TC+ +S+LQ L    YF +    ++     K  ++ +   SC  D     L+ 
Sbjct: 138 GLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCK-VRSPDKCFSCALDKIVHELYG 196
Query: 278 NIATHKKKVGSIAPKK------FITRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326
            + T +    S +  +       +T   K       Y QQDAHEF  F+IN I++
Sbjct: 197 ALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQ 251

>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 24/134 (17%)
Query: 329 MKVKKLPMILALHLKRFKY-MDKMNRHVKVSHRVVFPLELRLFHL---------SDDAVN 378
           + + KLP +L L LKRF++ ++  NR  K+   + FP  L + +          S++   
Sbjct: 349 LGIHKLPSVLVLQLKRFEHLLNGSNR--KLDDFIEFPTYLNMKNYCSTKEKDKHSENGKV 406
Query: 379 PDRMYNLVAVVIHCGSGPNRGHYISIVKSHXXXXXXXXXXXXKIDQSTIEDFFGLTSDHQ 438
           PD +Y L+ +V H G+  N GHYI+  K              K + S +       S  +
Sbjct: 407 PDIIYELIGIVSHKGT-VNEGHYIAFCK-------ISGGQWFKFNDSMVSSI----SQEE 454
Query: 439 KSSETGYILFYQSR 452
              E  Y+LFY  R
Sbjct: 455 VLKEQAYLLFYTIR 468

>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 23/145 (15%)
Query: 77  YMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPXXXXXXXXXXXXFEEPTWVHEIF 136
           Y QQDAHEF  F+IN I++  + + P +   S+ +               +    VH +F
Sbjct: 238 YSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNK-------------QCECIVHTVF 284
Query: 137 QGILTSETKCLNCETVSSKDED-FFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDN 195
           +G L S   C  C+  S    D F DL +DIK    + +CL  F   E L  D  + C  
Sbjct: 285 EGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQL-KDFNYHCGE 343
Query: 196 CASYQEAQGPNISALEKEIGPDRFP 220
           C S Q+A         K++G  + P
Sbjct: 344 CNSTQDAI--------KQLGIHKLP 360

>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 227 GLVNFGNTCYSNSVLQAL----YFCKPFRDRVLEYKAKNKKNKETLLSCLAD-----LFH 277
           GL+N GNTC+ +S+LQ L    YF +    ++     K  ++ +   SC  D     L+ 
Sbjct: 143 GLINMGNTCFMSSILQCLIHNPYFIRHSMSQIHSNNCK-VRSPDKCFSCALDKIVHELYG 201
Query: 278 NIATHKKKVGSIAPKK------FITRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326
            + T +    S +  +       +T   K       Y QQDAHEF  F+IN I++
Sbjct: 202 ALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQ 256

>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 24/134 (17%)
Query: 329 MKVKKLPMILALHLKRFKY-MDKMNRHVKVSHRVVFPLELRLFHL---------SDDAVN 378
           + + KLP +L L LKRF++ ++  NR  K+   + FP  L + +          S++   
Sbjct: 354 LGIHKLPSVLVLQLKRFEHLLNGSNR--KLDDFIEFPTYLNMKNYCSTKEKDKHSENGKV 411
Query: 379 PDRMYNLVAVVIHCGSGPNRGHYISIVKSHXXXXXXXXXXXXKIDQSTIEDFFGLTSDHQ 438
           PD +Y L+ +V H G+  N GHYI+  K              K + S +       S  +
Sbjct: 412 PDIIYELIGIVSHKGT-VNEGHYIAFCK-------ISGGQWFKFNDSMVSSI----SQEE 459
Query: 439 KSSETGYILFYQSR 452
              E  Y+LFY  R
Sbjct: 460 VLKEQAYLLFYTIR 473

>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRD----RVLEYKAKNKKNKET-LLSCLADLFHNIAT 281
           GL N GNTC+ NS+LQ L   +  RD    R+      +  N  T L+   A L   I T
Sbjct: 37  GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWT 96
Query: 282 HKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLP 335
                  ++P +F T++++    F  Y QQDA EFL FL++ ++ +  +V   P
Sbjct: 97  SSPN-DVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRP 149

>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRD----RVLEYKAKNKKNKET-LLSCLADLFHNIAT 281
           GL N GNTC+ NS+LQ L   +  RD    R+      +  N  T L+   A L   I T
Sbjct: 30  GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWT 89
Query: 282 HKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLP 335
                  ++P +F T++++    F  Y QQDA EFL FL++ ++ +  +V   P
Sbjct: 90  SSPN-DVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRP 142

>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRD----RVLEYKAKNKKNKET-LLSCLADLFHNIAT 281
           GL N GNTC+ NS+LQ L   +  RD    R+      +  N  T L+   A L   I T
Sbjct: 11  GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWT 70
Query: 282 HKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLP 335
                  ++P +F T++++    F  Y QQDA EFL FL++ ++ +  +V   P
Sbjct: 71  SSPN-DVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRP 123

>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRD----RVLEYKAKNKKNKET-LLSCLADLFHNIAT 281
           GL N GNT + NS+LQ L   +  RD    R+      +  N  T L+   A L   I T
Sbjct: 11  GLRNLGNTXFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWT 70
Query: 282 HKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLP 335
                  ++P +F T++++    F  Y QQDA EFL FL++ ++ +  +V   P
Sbjct: 71  SSPN-DVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRP 123

>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 11/151 (7%)
Query: 182 TETLCSDNKFKCDNCASYQEAQGPNISALE-KEIGPDRFPPNERYFGLVNFGNTCYSNSV 240
           T T+  +NK  C     Y +A+   +SA + + + P          GL N GNTCY NS+
Sbjct: 23  TPTVNRENKPTC-----YPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSI 77
Query: 241 LQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGS-----IAPKKFI 295
           LQ L       D       ++  N+  LL    ++        K + +     I+PK F 
Sbjct: 78  LQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK 137
Query: 296 TRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326
             + K  D+F  Y QQD+ E L FL++ ++E
Sbjct: 138 ITIGKINDQFAGYSQQDSQELLLFLMDGLHE 168

>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPD---RMY 383
           K +++ KLP +L +HLKRF Y  +  + ++ S  V FPLE     LS   + P    + Y
Sbjct: 282 KKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTS--VDFPLE--NLDLSQYVIGPKNNLKKY 337
Query: 384 NLVAVVIHCGSGPNRGHYISIVKS 407
           NL +V  H G G + GHY +  K+
Sbjct: 338 NLFSVSNHYG-GLDGGHYTAYCKN 360

>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex Length = 854

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 23/127 (18%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKET-----LLSCLADLFHNI 279
           Y G+ N GN+CY NSV+Q L+    F+ + ++   K  +N  T       + +A L H +
Sbjct: 344 YTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGL 403
Query: 280 AT------------------HKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLI 321
            +                   K+    IAP+ F   + K   EF    QQDA EF   LI
Sbjct: 404 LSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLI 463
Query: 322 NHINEKC 328
           N +   C
Sbjct: 464 NMVERNC 470

>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
Query: 182 TETLCSDNKFKCDNCASYQEAQGPNISALE-KEIGPDRFPPNERYFGLVNFGNTCYSNSV 240
           T T+  +NK  C     Y +A+   +SA + + + P          GL N GNTCY NS+
Sbjct: 23  TPTVNRENKPTC-----YPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYXNSI 77
Query: 241 LQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGS-----IAPKKFI 295
           LQ L       D       ++  N+  LL    ++        K + +     I+PK F 
Sbjct: 78  LQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIXKALWTGQYRYISPKDFK 137
Query: 296 TRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKV 331
             + K  D+F  Y QQD+ E L FL + ++E   K 
Sbjct: 138 ITIGKINDQFAGYSQQDSQELLLFLXDGLHEDLNKA 173

>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPD---RMY 383
           K +++ KLP +L +HLKRF Y  +  + ++ S  V FPLE     LS   + P    + Y
Sbjct: 282 KKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTS--VDFPLE--NLDLSQYVIGPKNNLKKY 337
Query: 384 NLVAVVIHCGSGPNRGHYISIVKS 407
           NL +V  H G G + GHY +  K+
Sbjct: 338 NLFSVSNHYG-GLDGGHYTAYCKN 360

>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKK 284
           Y GL N G TCY NS+LQ L+F    R  V     +   + +++   L  +F+ +    K
Sbjct: 175 YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDK 234
Query: 285 KVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEK 327
            VG+   KK       E    D++MQ D  E    L++++  K
Sbjct: 235 PVGT---KKLTKSFGWET--LDSFMQHDVQELCRVLLDNVENK 272

>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRL--FHLSDDAVNPDRMY 383
           EK +K   LP +L L L RF Y  + ++++K++ R  FP +L L  F    D  +P   Y
Sbjct: 352 EKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPAN-Y 410
Query: 384 NLVAVVIHCGSGPNRGHYI 402
            L AV++H G   + GHY+
Sbjct: 411 ILHAVLVHSGDN-HGGHYV 428

>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKK 284
           Y GL N G TCY NS+LQ L+F    R  V     +   + +++   L  +F+ +    K
Sbjct: 6   YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDK 65
Query: 285 KVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEK 327
            VG+   KK       E    D++MQ D  E    L++++  K
Sbjct: 66  PVGT---KKLTKSFGWET--LDSFMQHDVQELCRVLLDNVENK 103

>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRL--FHLSDDAVNPDRMY 383
           EK +K   LP +L L L RF Y  + ++++K++ R  FP +L L  F    D  +P   Y
Sbjct: 183 EKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPAN-Y 241
Query: 384 NLVAVVIHCGSGPNRGHYI 402
            L AV++H G   + GHY+
Sbjct: 242 ILHAVLVHSGDN-HGGHYV 259

>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKK 284
           Y GL N G TCY NS+LQ L+F    R  V     +   + +++   L  +F+ +    K
Sbjct: 6   YVGLKNQGATCYXNSLLQTLFFTNQLRKAVYXXPTEGDDSSKSVPLALQRVFYELQHSDK 65
Query: 285 KVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEK 327
            VG+   KK       E    D++ Q D  E    L++++  K
Sbjct: 66  PVGT---KKLTKSFGWET--LDSFXQHDVQELCRVLLDNVENK 103

>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRL--FHLSDDAVNPDRMY 383
           EK +K   LP +L L L RF Y  + ++++K++ R  FP +L L  F    D  +P   Y
Sbjct: 183 EKGVKFLTLPPVLHLQLXRFXYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPAN-Y 241
Query: 384 NLVAVVIHCGSGPNRGHYI 402
            L AV++H G   + GHY+
Sbjct: 242 ILHAVLVHSGDN-HGGHYV 259

>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated Deubiquitinating Enzyme Length = 404

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKET-----LLSCLADLFHNIAT 281
           GL N GNTCY N+ +Q +      +D +  Y    + + E      + + L DLF ++  
Sbjct: 16  GLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSM-- 73
Query: 282 HKKKVGSIAPKKFITRLR------KEKDEFDNYMQQDAHE 315
             K   SI P   +  L        EK E   Y+QQDA+E
Sbjct: 74  -DKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANE 112

>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase 6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A Resolution Length = 415

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 18/110 (16%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYK---------AKNKKNKETLLSCLADLFH 277
           G  N GNTCY N+ LQALY     RD +L Y          A++++  + ++      F 
Sbjct: 26  GFKNXGNTCYLNATLQALYRVNDLRDXILNYNPSQGVSNSGAQDEEIHKQIVIEXKRCFE 85
Query: 278 NIATHKKKVGSIAPKKFITRLRK------EKDEFDN-YMQQDAHEFLNFL 320
           N+    K   S+ P   +  LRK      E+D     Y QQDA E    L
Sbjct: 86  NL--QNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQL 133

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	470
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	1e-36
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	6e-32
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	7e-23
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	2e-35
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	7e-29
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	2e-26
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	3e-34
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	2e-29
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	2e-24
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	4e-30
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	6e-28
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	2e-26
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	5e-30
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	2e-26
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	1e-21
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	2e-28
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	2e-26
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	7e-22
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	2e-27
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	2e-25
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	2e-21
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	2e-27
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	4e-15
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	2e-12
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	2e-05
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	6e-25
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	1e-23
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	4e-23
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	8e-24
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	2e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2vhf_A	374	Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki	4e-07

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476

 Score =  140 bits (353), Expect = 1e-36
 Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 15/134 (11%)

Query: 71  SDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPT 130
           +     Y QQDAHEF  F+IN I++  + + P +   S+             ++  +   
Sbjct: 232 NQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSR-------------ANNKQCEC 278

Query: 131 WVHEIFQGILTSETKCLNCETVSSKD-EDFFDLQVDIKQNTSITQCLRGFSSTETLCSDN 189
            VH +F+G L S   C  C+  S    + F DL +DIK    + +CL  F   E L  D 
Sbjct: 279 IVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLK-DF 337

Query: 190 KFKCDNCASYQEAQ 203
            + C  C S Q+A 
Sbjct: 338 NYHCGECNSTQDAI 351

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476

 Score =  126 bits (318), Expect = 6e-32
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 24/138 (17%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLF---------HLSDDA 376
            K + + KLP +L L LKRF+++     + K+   + FP  L +            S++ 
Sbjct: 351 IKQLGIHKLPSVLVLQLKRFEHLLN-GSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENG 409

Query: 377 VNPDRMYNLVAVVIHCGSGPNRGHYISIVK-SHDFWLLFDDDVVDKIDQSTIEDFFGLTS 435
             PD +Y L+ +V H G+  N GHYI+  K S   W  F+D +V  I Q  +        
Sbjct: 410 KVPDIIYELIGIVSHKGT-VNEGHYIAFCKISGGQWFKFNDSMVSSISQEEV-------- 460

Query: 436 DHQKSSETGYILFYQSRD 453
                 E  Y+LFY  R 
Sbjct: 461 ----LKEQAYLLFYTIRQ 474

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476

 Score =  100 bits (249), Expect = 7e-23
 Identities = 35/202 (17%), Positives = 59/202 (29%), Gaps = 17/202 (8%)

Query: 146 CLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGP 205
           CL C      +   F        +        G            +  +           
Sbjct: 65  CLQCGFCGCWNHSHFLSHSKQIGHIFGINSNNGLLFC---FKCEDYIGNIDLINDAILAK 121

Query: 206 NISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNK 265
               +  +         +   GL+N G+TC+ +S+LQ L     F    +     N    
Sbjct: 122 YWDDVCTKTMVPSMERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKV 181

Query: 266 ETLLSCLA--------DLFHNIATHKKKVGS------IAPKKFITRLRKEKDEFDNYMQQ 311
            +   C +        +L+  + T +    S            +T   K       Y QQ
Sbjct: 182 RSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQ 241

Query: 312 DAHEFLNFLINHINEKCMKVKK 333
           DAHEF  F+IN I++  +    
Sbjct: 242 DAHEFWQFIINQIHQSYVLDLP 263

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348

 Score =  133 bits (337), Expect = 2e-35
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 71  SDEFDNYMQQDAHEFLNFLINHINEVIL--SERPQSNAKSKLSAPDGGGGDNHSSSGFE- 127
           +  F  Y QQDA EFL FL++ ++  +   + RP+SN ++    PD   G        E 
Sbjct: 90  APRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLER 149

Query: 128 EPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNT----SITQCLRGFSSTE 183
           E + + ++F G L S   C +C   S+  + F+DL + I +      ++  C+R F+  +
Sbjct: 150 EDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKED 209

Query: 184 TLCSDNKFKCDNCASYQEAQ 203
            L  D K  C  C   +   
Sbjct: 210 VLDGDEKPTCCRCRGRKRCI 229

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348

 Score =  115 bits (290), Expect = 7e-29
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKET-----LLSCLADLFHNIAT 281
           GL N GNTC+ NS+LQ L   +  RD  L+       +  +     L+   A L   I T
Sbjct: 11  GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWT 70

Query: 282 HKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLP 335
                  ++P +F T++++    F  Y QQDA EFL FL++ ++ +  +V   P
Sbjct: 71  SSPN-DVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRP 123

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348

 Score =  109 bits (273), Expect = 2e-26
 Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 18/135 (13%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNL 385
            K   +++ P IL LHLKRF       R  K++  V FPL                +YNL
Sbjct: 229 IKKFSIQRFPKILVLHLKRFSES--RIRTSKLTTFVNFPLRDLDLREFASENTNHAVYNL 286

Query: 386 VAVVIHCGSGPNRGHYISIVKSH--DFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSET 443
            AV  H G+    GHY +  +S     W  F+D  V  +  S +             +  
Sbjct: 287 YAVSNHSGT-TMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVR------------TSD 333

Query: 444 GYILFYQSRDSTDAR 458
            Y+LFY+   S  +R
Sbjct: 334 AYLLFYE-LASPPSR 347

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396

 Score =  131 bits (331), Expect = 3e-34
 Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 13/142 (9%)

Query: 71  SDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFE--- 127
           +D+F  Y QQD+ E L FL++ ++E +         + +    +    D+  ++      
Sbjct: 144 NDQFAGYSQQDSQELLLFLMDGLHEDLNKADN----RKRYKEENNDHLDDFKAAEHAWQK 199

Query: 128 ----EPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNT--SITQCLRGFSS 181
                 + +  +FQG   S  +CL C   S   E F  L + +   +  ++  CLR FS 
Sbjct: 200 HKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSK 259

Query: 182 TETLCSDNKFKCDNCASYQEAQ 203
            E L  +N+F C +C + +++ 
Sbjct: 260 EEKLTDNNRFYCSHCRARRDSL 281

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396

 Score =  118 bits (297), Expect = 2e-29
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 5/141 (3%)

Query: 200 QEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKA 259
           +       ++  + + P          GL N GNTCY NS+LQ L       D       
Sbjct: 37  KAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCY 96

Query: 260 KNKKNKETLLSCLADLFHNIATHKKKV-----GSIAPKKFITRLRKEKDEFDNYMQQDAH 314
           ++  N+  LL    ++        K +       I+PK F   + K  D+F  Y QQD+ 
Sbjct: 97  QDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQ 156

Query: 315 EFLNFLINHINEKCMKVKKLP 335
           E L FL++ ++E   K     
Sbjct: 157 ELLLFLMDGLHEDLNKADNRK 177

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396

 Score =  103 bits (258), Expect = 2e-24
 Identities = 45/129 (34%), Positives = 61/129 (47%), Gaps = 18/129 (13%)

Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLE-LRLFHLSDDAVNPDRMYNL 385
           K +++ KLP +L +HLKRF Y  +  +  K+   V FPLE L L        N  + YNL
Sbjct: 282 KKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQYVIGPKNNLKKYNL 339

Query: 386 VAVVIHCGSGPNRGHYISIVK--SHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSET 443
            +V  H G G + GHY +  K  +   W  FDD  V  I  S+++            S  
Sbjct: 340 FSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK------------SSA 386

Query: 444 GYILFYQSR 452
            YILFY S 
Sbjct: 387 AYILFYTSL 395

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355

 Score =  119 bits (299), Expect = 4e-30
 Identities = 35/157 (22%), Positives = 52/157 (33%), Gaps = 24/157 (15%)

Query: 71  SDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFE--- 127
              F  Y QQDA EFL  L+  ++  I     ++                 +        
Sbjct: 83  VPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELS 142

Query: 128 ---------------EPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNT-- 170
                          E + + ++F G L S  KC  C   S+  E F DL + I +    
Sbjct: 143 DDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFA 202

Query: 171 ----SITQCLRGFSSTETLCSDNKFKCDNCASYQEAQ 203
               S+  C   F+  E L S+N   CD C     + 
Sbjct: 203 GGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRST 239

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355

 Score =  113 bits (283), Expect = 6e-28
 Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 15/130 (11%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNL 385
            K + V++ P IL LHL RF       +  K S  V FPL+               +Y L
Sbjct: 239 TKKLTVQRFPRILVLHLNRFSASRGSIK--KSSVGVDFPLQRLSLGDFASDKAGSPVYQL 296

Query: 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
            A+  H GS  + GHY ++ +    W +++D  V  + ++ +            +S  GY
Sbjct: 297 YALCNHSGS-VHYGHYTALCRCQTGWHVYNDSRVSPVSENQV------------ASSEGY 343

Query: 446 ILFYQSRDST 455
           +LFYQ     
Sbjct: 344 VLFYQLMQEP 353

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355

 Score =  108 bits (272), Expect = 2e-26
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 3/114 (2%)

Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIAT--- 281
           + GL N GNTC+ N+VLQ L   +P RD  L    + +         L + F ++     
Sbjct: 3   HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALW 62

Query: 282 HKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLP 335
           H     ++ P +F    +K    F  Y QQDA EFL  L+  ++ +  +  +  
Sbjct: 63  HPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRA 116

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404

 Score =  120 bits (301), Expect = 5e-30
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 14/120 (11%)

Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKN-----KETLLSCLADLFHNIAT 281
           GL N GNTCY N+ +Q +      +D +  Y    + +      + + + L DLF ++  
Sbjct: 16  GLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSM-- 73

Query: 282 HKKKVGSIAPKKFITRLRK------EKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLP 335
             K   SI P   +  L        EK E   Y+QQDA+E    ++  + +K   ++   
Sbjct: 74  -DKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDS 132

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404

 Score =  109 bits (274), Expect = 2e-26
 Identities = 45/178 (25%), Positives = 61/178 (34%), Gaps = 55/178 (30%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHL------------- 372
            K  K+ +LP  L + + RF Y +K + + KV   V FPL L ++ L             
Sbjct: 222 IKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFR 281

Query: 373 ------------------------------------SDDAVNPDRMYNLVAVVIHCGSGP 396
                                                D   N    Y+L AV+ H G   
Sbjct: 282 SKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSS 341

Query: 397 NRGHYISIVK-SHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRD 453
           + GHY+S VK   D W+ FDDD V  +    I    G    H       Y+L Y  R 
Sbjct: 342 SSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWH-----IAYVLLYGPRR 394

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404

 Score = 95.5 bits (237), Expect = 1e-21
 Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 10/131 (7%)

Query: 71  SDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPT 130
             E   Y+QQDA+E    ++  + + +        A    S  +       +++  ++ +
Sbjct: 99  KGEQGQYLQQDANECWIQMMRVLQQKL-------EAIEDDSVKETDSSSASAATPSKKKS 151

Query: 131 WVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSIT---QCLRGFSSTETLCS 187
            + + F     +  KC   E           LQ+    N  +      L+     E    
Sbjct: 152 LIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITKQ 211

Query: 188 DNKFKCDNCAS 198
               + +    
Sbjct: 212 SPTLQRNALYI 222

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353

 Score =  114 bits (286), Expect = 2e-28
 Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 7/137 (5%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFH-LSDDAVNPDRMYN 384
           EK +K   LP +L L L RF Y  + ++++K++ R  FP +L L   L          Y 
Sbjct: 183 EKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYI 242

Query: 385 LVAVVIHCGSGPNRGHYISIVK--SHDFWLLFDDDVVDKIDQST-IEDFFGLTSD--HQK 439
           L AV++H G   + GHY+  +       W  FDDDVV +  +   IE  +G   D    +
Sbjct: 243 LHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVR 301

Query: 440 SSETGYILFYQSRDSTD 456
                Y+L Y       
Sbjct: 302 HCTNAYMLVYIRESKLS 318

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353

 Score =  108 bits (272), Expect = 2e-26
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 27/132 (20%)

Query: 72  DEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTW 131
           +  D++MQ D  E    L++++                               G      
Sbjct: 79  ETLDSFMQHDVQELCRVLLDNVEN--------------------------KMKGTCVEGT 112

Query: 132 VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKF 191
           + ++F+G + S  +C   +  S + ED++D+Q+ IK   +I +    + + E L  DNK+
Sbjct: 113 IPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKY 172

Query: 192 KCDNCASYQEAQ 203
                   QEA+
Sbjct: 173 DAGEH-GLQEAE 183

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353

 Score = 95.7 bits (238), Expect = 7e-22
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKK 284
           Y GL N G TCY NS+LQ L+F    R  V     +   + +++   L  +F+ +    K
Sbjct: 6   YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDK 65

Query: 285 KVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKC 328
            VG    KK       E    D++MQ D  E    L++++  K 
Sbjct: 66  PVG---TKKLTKSFGWET--LDSFMQHDVQELCRVLLDNVENKM 104

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score =  114 bits (286), Expect = 2e-27
 Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 7/137 (5%)

Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFH-LSDDAVNPDRMYN 384
           EK +K   LP +L L L RF Y  + ++++K++ R  FP +L L   L          Y 
Sbjct: 352 EKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYI 411

Query: 385 LVAVVIHCGSGPNRGHYISIVK--SHDFWLLFDDDVVDKIDQST-IEDFFGLTSD--HQK 439
           L AV++H G   + GHY+  +       W  FDDDVV +  +   IE  +G   D    +
Sbjct: 412 LHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVR 470

Query: 440 SSETGYILFYQSRDSTD 456
                Y+L Y       
Sbjct: 471 HCTNAYMLVYIRESKLS 487

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score =  108 bits (270), Expect = 2e-25
 Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 35/150 (23%)

Query: 72  DEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTW 131
           +  D++MQ D  E    L++++   +                           G      
Sbjct: 248 ETLDSFMQHDVQELCRVLLDNVENKM--------------------------KGTCVEGT 281

Query: 132 VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKF 191
           + ++F+G + S  +C   +  S + ED++D+Q+ IK   +I +    + + E L  DNK+
Sbjct: 282 IPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKY 341

Query: 192 KCDNCASYQEAQGPNISALEKEIGPDRFPP 221
                   QEA        EK +     PP
Sbjct: 342 DAGEH-GLQEA--------EKGVKFLTLPP 362

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 95.8 bits (238), Expect = 2e-21
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKK 284
           Y GL N G TCY NS+LQ L+F    R  V     +   + +++   L  +F+ +    K
Sbjct: 175 YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDK 234

Query: 285 KVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKC 328
            VG    KK       E    D++MQ D  E    L++++  K 
Sbjct: 235 PVG---TKKLTKSFGWET--LDSFMQHDVQELCRVLLDNVENKM 273

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score =  114 bits (287), Expect = 2e-27
 Identities = 53/243 (21%), Positives = 90/243 (37%), Gaps = 34/243 (13%)

Query: 114 DGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSIT 173
           DG GG+NH+   + E  +   +  G +T +   +       +D+   D  +    +    
Sbjct: 244 DGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYS---YDEDDMVLDPSLAEHLSHFGI 300

Query: 174 QCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGN 233
             L+   + +T+             + E    +   L+   GP        Y G+ N GN
Sbjct: 301 DMLKMQKTDKTMTELEIDMNQRIGEW-ELIQESGVPLKPLFGP-------GYTGIRNLGN 352

Query: 234 TCYSNSVLQALYFCKPFRDRVLEYKAKNKKN-----KETLLSCLADLFH----------- 277
           +CY NSV+Q L+    F+ + ++   K  +N      +   + +A L H           
Sbjct: 353 SCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPV 412

Query: 278 -------NIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMK 330
                   +   K+    IAP+ F   + K   EF    QQDA EF   LIN +   C  
Sbjct: 413 PESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRS 472

Query: 331 VKK 333
            + 
Sbjct: 473 SEN 475

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score = 76.9 bits (188), Expect = 4e-15
 Identities = 27/160 (16%), Positives = 46/160 (28%), Gaps = 6/160 (3%)

Query: 46  EQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSN 105
           E+   Q ++  G    +   L      EF    QQDA EF   LIN +     S    + 
Sbjct: 419 ERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRSSENPNE 478

Query: 106 AKSKLSAPDGGGGDNHSSSGFEEPTWV---HEIFQGILTSETKCLNCETVSSKDEDFFDL 162
               L                +   ++          L  E      E     +E+   L
Sbjct: 479 VFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMAL 538

Query: 163 QVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEA 202
              ++     + CL  + + E +   + F      +   A
Sbjct: 539 PELVRAQVPFSSCLEAYGAPEQV---DDFWSTALQAKSVA 575

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score = 68.4 bits (166), Expect = 2e-12
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 14/82 (17%)

Query: 373 SDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFG 432
                +    Y L A + H G+    GHY+  +K    W++++D  V   ++        
Sbjct: 787 GPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCASEKPP------ 840

Query: 433 LTSDHQKSSETGYILFYQSRDS 454
                    + GYI FYQ   S
Sbjct: 841 --------KDLGYIYFYQRVAS 854

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDR 381
           K  +    P  L + +K+F +        K+   +  P EL +  L    + P  
Sbjct: 577 KTTRFASFPDYLVIQIKKFTFGLDWVPK-KLDVSIEMPEELDISQLRGTGLQPGE 630

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367

 Score =  104 bits (261), Expect = 6e-25
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 30/159 (18%)

Query: 71  SDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFE--- 127
           + +F  Y QQD+ E L FL++ ++E +   +     K  L   D  G  +   +      
Sbjct: 90  APQFSGYQQQDSQELLAFLLDGLHEDLNRVKK----KPYLELKDANGRPDAVVAKEAWEN 145

Query: 128 ----EPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNT------------- 170
                 + + + F G+  S   C  C  VS   + F  L + +                 
Sbjct: 146 HRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQK 205

Query: 171 ------SITQCLRGFSSTETLCSDNKFKCDNCASYQEAQ 203
                 ++  C+  F++ ETL   + + C NC  +Q+A 
Sbjct: 206 KKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQAT 244

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367

 Score =  100 bits (251), Expect = 1e-23
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 5/116 (4%)

Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVL--EYKAK-NKKNKETLLSCLADLFHNI--AT 281
           GL N GNTC+ NS LQ L    P  D  L  EY+A+ N+ N   +   +A+ +  +    
Sbjct: 10  GLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQM 69

Query: 282 HKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMI 337
              +   +AP+ F T++ +   +F  Y QQD+ E L FL++ ++E   +VKK P +
Sbjct: 70  WSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYL 125

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367

 Score = 99.6 bits (248), Expect = 4e-23
 Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 18/138 (13%)

Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLE-LRLFHLSDDAVNPDRMYNL 385
           K   +  LP IL +HLKRF Y        K+   V FP+  L +     +      +Y+L
Sbjct: 245 KKFDLWSLPKILVVHLKRFSYNR--YWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDL 302

Query: 386 VAVVIHCGSGPNRGHYISIVKSH--DFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSET 443
           +AV  H G+    GHY +  K+     W  FDD  V    +  I             ++ 
Sbjct: 303 IAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIV------------TKA 349

Query: 444 GYILFYQSRDSTDARTMN 461
            Y+LFYQ RD    +T +
Sbjct: 350 AYVLFYQRRDDEFYKTPS 367

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415

 Score =  102 bits (254), Expect = 8e-24
 Identities = 52/388 (13%), Positives = 101/388 (26%), Gaps = 93/388 (23%)

Query: 71  SDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPT 130
             +   Y QQDA E    L + ++ V                                  
Sbjct: 115 DSQGGFYKQQDAEELFTQLFHSMSIVF-------------------------------GD 143

Query: 131 WVHEIFQGILTSETKCL--NCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSD 188
              E F+    +  K    + +    ++E    LQ  I   T+  +        E +   
Sbjct: 144 KFSEDFRIQFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNEKIEKR 203

Query: 189 NKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCK 248
           +     N                 E    R P                       + + +
Sbjct: 204 SDLTGANSIY------------SVEKKISRLPKF-------------------LTVQYVR 232

Query: 249 PFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNY 308
            F  R    K+K                  I         +     +T     +      
Sbjct: 233 FFWKRSTNKKSK------------------ILRKVVFPFQLDVADMLTPEYAAEKV---K 271

Query: 309 MQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELR 368
           ++ +  +          E   +         +   R +Y  ++  +     + +   +  
Sbjct: 272 VRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKH 331

Query: 369 LFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS---HDFWLLFDDDVVDKIDQS 425
                +   NP  +YNL+ V+ H G+    GHY + ++     + W  F+DD V  +++ 
Sbjct: 332 FPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKE 391

Query: 426 TIEDFFGLTSDHQKSSETGYILFYQSRD 453
            IE   G          +  IL Y+   
Sbjct: 392 KIESLAGGGESD-----SALILMYKGFG 414

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415

 Score = 98.0 bits (243), Expect = 2e-22
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 18/122 (14%)

Query: 222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYK---------AKNKKNKETLLSCL 272
            +   G  N GNTCY N+ LQALY     RD +L Y          A++++  + ++  +
Sbjct: 21  AQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEM 80

Query: 273 ADLFHNIATHKKKVGSIAPKKFITRLRKEKDEF-------DNYMQQDAHEFLNFLINHIN 325
              F N+     K  S+ P   +  LRK   +F         Y QQDA E    L + ++
Sbjct: 81  KRCFENLQNKSFK--SVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMS 138

Query: 326 EK 327
             
Sbjct: 139 IV 140

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 2e-10
 Identities = 65/479 (13%), Positives = 130/479 (27%), Gaps = 148/479 (30%)

Query: 28  GKTC--KE--KEDRIEKSQP---FWEQTSLQDKISLGWECS--LILEL--DLCSSDEFDN 76
           GKT    +     +++       FW        ++L    S   +LE+   L    + + 
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFW--------LNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 77  YMQQDAHEFLNFLINHINEV---ILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVH 133
             + D    +   I+ I      +L  +P  N    L         N  ++         
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--------LNVQNA------KAW 259

Query: 134 EIFQGILTSETKCLNCET-VSSKDEDFFD-LQVDIKQNTSITQCLRGFSSTET--LCSDN 189
             F          L+C+  ++++ +   D L      + S+       +  E   L    
Sbjct: 260 NAFN---------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-- 308

Query: 190 KFKCDNCASYQ---EAQGPN------ISALEKEIGPDRF--------------------- 219
             K  +C       E    N      I+   ++ G   +                     
Sbjct: 309 --KYLDCRPQDLPREVLTTNPRRLSIIAESIRD-GLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 220 -PPNE---RYFGLVNF-GNTCYSNSVLQALYFCKPFRD--RVLE----YKAKNKKNKETL 268
             P E    +  L  F  +      +L  ++F     D   V+     Y    K+ KE+ 
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 269 LSCLADLF--------HNIATHKKKVGSIAPKKFITRLRKEKDEFDNY------------ 308
           +S +  ++        +  A H+  V      K            D Y            
Sbjct: 426 IS-IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 309 -MQQDAHEF------LNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRV 361
              +    F        FL   I            IL   L++ K+              
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT-LQQLKFYKP----------- 532

Query: 362 VFPLELRLFHLSDDAVNPDRMYN-LVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVV 419
                    ++ D+    +R+ N ++  +           Y  +++     L+ +D+ +
Sbjct: 533 ---------YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR---IALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 73/514 (14%), Positives = 136/514 (26%), Gaps = 176/514 (34%)

Query: 50  LQDKISLGWECSLILEL--DLCSSDEFDN-YMQQDAHEFLNFLINHINEVILSERPQSNA 106
            +D     ++C  + ++   + S +E D+  M +DA      L        L  + +   
Sbjct: 25  FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW-----TLLSKQEEMV 79

Query: 107 KSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCET---VSSKDEDFFDLQ 163
           +  +   +     N+         ++    +    +E +  +  T   +  +D  + D Q
Sbjct: 80  QKFV---EEVLRINYK--------FLMSPIK----TEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 164 VDIKQNTSITQC---LRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFP 220
           V  K N S  Q    LR     + L                    N+             
Sbjct: 125 VFAKYNVSRLQPYLKLR-----QALLELRP-------------AKNVLI----------- 155

Query: 221 PNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIA 280
                 G++  G T  +  V  +         ++     KN  + ET+L  L  L + I 
Sbjct: 156 -----DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI- 209

Query: 281 THKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFL-----------INHINEKC- 328
                  S        R+   + E    ++   +E  N L            N  N  C 
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--NCLLVLLNVQNAKAWNAFNLSCK 267

Query: 329 ---------------------------------------------MKVKKLP-------- 335
                                                         + + LP        
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 336 ----MILAL------HLKRFKYM--DKMNRHVKVSHRVVFPLELR-LFH----LSDDAVN 378
               +I             +K++  DK+   ++ S  V+ P E R +F         A  
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 379 P---------DRMYNLVAVVIH-------CGSGPNRGHYISIVKSHDFWLLFDDDVVDK- 421
           P         D + + V VV++           P      SI      +L     + ++ 
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SI---PSIYLELKVKLENEY 443

Query: 422 ------IDQSTIEDFFGLTSDHQKSSETGYILFY 449
                 +D   I   F  + D        Y   +
Sbjct: 444 ALHRSIVDHYNIPKTF-DSDDLIPPYLDQYFYSH 476

>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Length = 374

 Score = 51.3 bits (122), Expect = 4e-07
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 224 RYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHK 283
           +  G+    N+CY +S L  L+      D VL  + K K + E        L   I    
Sbjct: 8   KKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVL-LRPKEKNDVEYYSETQELLRTEIVNPL 66

Query: 284 KKVGSIAPKKFITRLRKEKDEFD-----NYMQQDAHEFLNFLINHI 324
           +  G +     I +LRK  ++ +        ++D  EFLN L +HI
Sbjct: 67  RIYGYV-CATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHI 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	470
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	100.0
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	100.0
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	100.0
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	100.0
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	100.0
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	100.0
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	100.0
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	100.0
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	100.0
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	100.0
2vhf_A	374	Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki	99.96
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	99.7
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	99.7
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	99.68
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	99.67
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	99.66
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	99.66
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	99.65
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	99.61
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.57
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	99.56
2vhf_A	374	Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki	99.04
1qmy_A	167	Protease, leader protease; hydrolase, sulfhydryl p	94.49
3mp2_A	211	Non-structural protein 3; papain-like protease, TG	93.96

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.3e-59  Score=470.89  Aligned_cols=298  Identities=26%  Similarity=0.446  Sum_probs=239.4

Q ss_pred             CCCccccccc-CCchhhhh--hhhccchHHHHHhhhc-------------------------------CCccchhhHHHH
Q psy2130          18 PNERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQ-------------------------------DKISLGWECSLI   63 (470)
Q Consensus        18 ~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~-------------------------------~~~~~~~~~~~~   63 (470)
                      ...+++||.| ||||||||  |||+++|+|...+...                               .......+..|+
T Consensus         4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~   83 (367)
T 2y6e_A            4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK   83 (367)
T ss_dssp             CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred             CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHH
Confidence            3467999999 99999999  9999999993322110                               011222333677


Q ss_pred             HHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCC-----CCCCCCCCCCCchHHHHhhcc
Q psy2130          64 LELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGG-----GDNHSSSGFEEPTWVHEIFQG  138 (470)
Q Consensus        64 ~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~i~~~F~g  138 (470)
                      ++++ ...+.|.+++||||||||.+|||.||+|++...........  ..++..     ...|........++|.++|+|
T Consensus        84 ~~l~-~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~--~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G  160 (367)
T 2y6e_A           84 TQVG-RFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELK--DANGRPDAVVAKEAWENHRLRNDSVIVDTFHG  160 (367)
T ss_dssp             HHHH-HHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCC--CCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCE
T ss_pred             HHHH-HhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccc--cccCCchhHHHHHHHHHHHHhcCCccccccCc
Confidence            7777 67789999999999999999999999998754433211100  000000     000000011246789999999


Q ss_pred             ccccceeccccCCcccccCCCcccccccCC-------------------CCCHHHHhccCCccccccCCCccccCCcccc
Q psy2130         139 ILTSETKCLNCETVSSKDEDFFDLQVDIKQ-------------------NTSITQCLRGFSSTETLCSDNKFKCDNCASY  199 (470)
Q Consensus       139 ~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~-------------------~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~  199 (470)
                      +++++++|..|+++|.+.++|++|+|+||.                   ..+|++||+.|+.+|.+++++.|.|++|+.+
T Consensus       161 ~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~  240 (367)
T 2y6e_A          161 LFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKH  240 (367)
T ss_dssp             EEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEE
T ss_pred             EEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCC
Confidence            999999999999999999999999999985                   3689999999999999999999999999999


Q ss_pred             ccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHH
Q psy2130         200 QEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNI  279 (470)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l  279 (470)
                      ..+.                                                                            
T Consensus       241 ~~a~----------------------------------------------------------------------------  244 (367)
T 2y6e_A          241 QQAT----------------------------------------------------------------------------  244 (367)
T ss_dssp             ECCE----------------------------------------------------------------------------
T ss_pred             ceEE----------------------------------------------------------------------------
Confidence            8888                                                                            


Q ss_pred             HhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccc
Q psy2130         280 ATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSH  359 (470)
Q Consensus       280 ~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~  359 (470)
                                                                     ++..|.++|++|+|||+||.++..  ...|+..
T Consensus       245 -----------------------------------------------K~~~i~~lP~vL~i~LkRF~~~~~--~~~K~~~  275 (367)
T 2y6e_A          245 -----------------------------------------------KKFDLWSLPKILVVHLKRFSYNRY--WRDKLDT  275 (367)
T ss_dssp             -----------------------------------------------EEEEEEECCSEEEEEEECEEECSS--CEEECCC
T ss_pred             -----------------------------------------------EEEEEecCCcEEEEEEeCeeecCc--cceecCc
Confidence                                                           899999999999999999999753  3479999


Q ss_pred             eEecCc-ccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhhhhcCCCCC
Q psy2130         360 RVVFPL-ELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTSD  436 (470)
Q Consensus       360 ~v~fp~-~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~g~~~~  436 (470)
                      .|.||. .|||.+++.........|+|+|||+|.|. .++|||+||+|.  +++||+|||+.|++|++++|         
T Consensus       276 ~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v---------  345 (367)
T 2y6e_A          276 VVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQI---------  345 (367)
T ss_dssp             CEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECS-SSSCEEEEEEECTTTCCEEEEETTEEEECCGGGT---------
T ss_pred             eEEecCCcCChhhhccCCCCCCceEEEEEEeecCCC-CCCCeeeEEEEcCCCCeEEEECCCCceECCHHHc---------
Confidence            999997 79999998776667789999999999998 899999999997  58999999999999999888         


Q ss_pred             CCCCCCcEEEEEEEecCCCc
Q psy2130         437 HQKSSETGYILFYQSRDSTD  456 (470)
Q Consensus       437 ~~~~~~~aYiLfY~r~~~~~  456 (470)
                         ....||||||+|++...
T Consensus       346 ---~~~~aYiLfY~r~~~~~  362 (367)
T 2y6e_A          346 ---VTKAAYVLFYQRRDDEF  362 (367)
T ss_dssp             ---SSTTEEEEEEEECCC--
T ss_pred             ---CCCCcEEEEEEEcCCCC
Confidence               46899999999988653

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=100.00  E-value=1.4e-58  Score=466.85  Aligned_cols=294  Identities=29%  Similarity=0.477  Sum_probs=236.7

Q ss_pred             CCccccccc-CCchhhhh--hhhccchHHHHHhhhc-------------------------------CCccchhhHHHHH
Q psy2130          19 NERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQ-------------------------------DKISLGWECSLIL   64 (470)
Q Consensus        19 ~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~-------------------------------~~~~~~~~~~~~~   64 (470)
                      ..+++||.| ||||||||  |||+++|+|...+...                               .......+..|++
T Consensus        59 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~~  138 (396)
T 2gfo_A           59 GPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKI  138 (396)
T ss_dssp             STTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHHH
T ss_pred             CCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHHH
Confidence            468999999 99999999  9999999993322110                               0001122336777


Q ss_pred             HhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCC-----CCCCCCCCCCCchHHHHhhccc
Q psy2130          65 ELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGG-----GDNHSSSGFEEPTWVHEIFQGI  139 (470)
Q Consensus        65 ~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~i~~~F~g~  139 (470)
                      +++ ...+.|.+++||||||||.+|||.||+|+.....+.......  .+...     ...|......+.++|.++|+|+
T Consensus       139 ~l~-~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~--~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~  215 (396)
T 2gfo_A          139 TIG-KINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEEN--NDHLDDFKAAEHAWQKHKQLNESIIVALFQGQ  215 (396)
T ss_dssp             HHH-HHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC-----------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEE
T ss_pred             HHH-HhchhhcCCCCCChHHHHHHHHHHHHHHHhhhcccccccccc--ccccchhhHHHHHHHHhhhccCCccchhhCcE
Confidence            777 778899999999999999999999999987543221111000  00000     0000001123467899999999


Q ss_pred             cccceeccccCCcccccCCCcccccccCC--CCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCC
Q psy2130         140 LTSETKCLNCETVSSKDEDFFDLQVDIKQ--NTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPD  217 (470)
Q Consensus       140 ~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~--~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~  217 (470)
                      ++++++|..|++++.+.|+|++|+|+||.  .++|++||+.|+.+|.+++++.|.|++|+.+..+.              
T Consensus       216 l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~--------------  281 (396)
T 2gfo_A          216 FKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSL--------------  281 (396)
T ss_dssp             EEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEE--------------
T ss_pred             EEEEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceE--------------
Confidence            99999999999999999999999999997  47999999999999999999999999999998888              


Q ss_pred             CCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHH
Q psy2130         218 RFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITR  297 (470)
Q Consensus       218 ~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~  297 (470)
                                                                                                      
T Consensus       282 --------------------------------------------------------------------------------  281 (396)
T 2gfo_A          282 --------------------------------------------------------------------------------  281 (396)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCc-ccccccCCCCC
Q psy2130         298 LRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPL-ELRLFHLSDDA  376 (470)
Q Consensus       298 l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~-~ldl~~~~~~~  376 (470)
                                                   ++..|.++|++|+|||+||.+++.  ...|+...|.||. .|||.+++...
T Consensus       282 -----------------------------k~~~i~~lP~vLiihLkRF~~~~~--~~~K~~~~v~fp~~~Ldl~~~~~~~  330 (396)
T 2gfo_A          282 -----------------------------KKIEIWKLPPVLLVHLKRFSYDGR--WKQKLQTSVDFPLENLDLSQYVIGP  330 (396)
T ss_dssp             -----------------------------EEEEEEECCSEEEEEECCEEECSS--SEEECCCEEECCSSCBCCGGGBCSC
T ss_pred             -----------------------------EEEEEecCCcEEEEEecceeccCc--cceecCceEecchhhccccccccCC
Confidence                                         899999999999999999999753  3479999999996 69999998765


Q ss_pred             CCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEecC
Q psy2130         377 VNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRD  453 (470)
Q Consensus       377 ~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~~  453 (470)
                      ......|+|+|||+|.| +.++|||+||+|.  +++||+|||+.|++|++++|            ...+||||||+|++
T Consensus       331 ~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v------------~~~~aYiLfY~r~~  396 (396)
T 2gfo_A          331 KNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV------------KSSAAYILFYTSLG  396 (396)
T ss_dssp             CSSCCCBEEEEEEEEES-CTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHH------------SCTTEEEEEEECC-
T ss_pred             CCCCceEEEEEEEEecC-CCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHc------------CCCCceEEEEEEcC
Confidence            55678999999999999 5999999999996  48999999999999999988            47899999999975

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=100.00  E-value=2.5e-58  Score=459.40  Aligned_cols=296  Identities=28%  Similarity=0.444  Sum_probs=230.5

Q ss_pred             Cccccccc-CCchhhhh--hhhccchHHHHHh-----------------------------hhcCCccchhhHHHHHHhh
Q psy2130          20 ERYFGLVN-GKTCKEKE--DRIEKSQPFWEQT-----------------------------SLQDKISLGWECSLILELD   67 (470)
Q Consensus        20 ~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~-----------------------------~~~~~~~~~~~~~~~~~l~   67 (470)
                      .|++||.| ||||||||  |+|+++|+|...+                             ..........+..|++++.
T Consensus         1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~   80 (355)
T 3i3t_A            1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQ   80 (355)
T ss_dssp             --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHH
T ss_pred             CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence            36899999 99999999  9999999992211                             1111112334447777777


Q ss_pred             cccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCC---CCCCCCC---------------CCCCCCCCCc
Q psy2130          68 LCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSA---PDGGGGD---------------NHSSSGFEEP  129 (470)
Q Consensus        68 ~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~---~~~~~~~---------------~~~~~~~~~~  129 (470)
                       ...+.|.+++||||||||.+|||.||+|++..............   +......               .|........
T Consensus        81 -~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T 3i3t_A           81 -KYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERED  159 (355)
T ss_dssp             -HHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCC
T ss_pred             -HhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccC
Confidence             77889999999999999999999999999755433211110000   0000000               0000011245


Q ss_pred             hHHHHhhccccccceeccccCCcccccCCCcccccccCC------CCCHHHHhccCCccccccCCCccccCCcccccccc
Q psy2130         130 TWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQ------NTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQ  203 (470)
Q Consensus       130 s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~------~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~  203 (470)
                      ++|.++|+|++.++++|..|++++.+.++|++|+|+||.      ..+|++||+.|+++|.+++++.|.|++|+.+..+.
T Consensus       160 s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~  239 (355)
T 3i3t_A          160 SKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRST  239 (355)
T ss_dssp             SHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEE
T ss_pred             CcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceE
Confidence            779999999999999999999999999999999999986      35999999999999999999999999999999888


Q ss_pred             CCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCC
Q psy2130         204 GPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHK  283 (470)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~  283 (470)
                                                                                                      
T Consensus       240 --------------------------------------------------------------------------------  239 (355)
T 3i3t_A          240 --------------------------------------------------------------------------------  239 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEec
Q psy2130         284 KKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVF  363 (470)
Q Consensus       284 ~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~f  363 (470)
                                                                 ++..|.++|++|+|||+||.++.  ....|+...|.|
T Consensus       240 -------------------------------------------k~~~i~~lP~vL~i~lkRF~~~~--~~~~K~~~~v~f  274 (355)
T 3i3t_A          240 -------------------------------------------KKLTVQRFPRILVLHLNRFSASR--GSIKKSSVGVDF  274 (355)
T ss_dssp             -------------------------------------------EEEEEEECCSEEEEEECCEECCS--SCCEECCCCCBC
T ss_pred             -------------------------------------------EEEEcccCChheEEEhhheecCC--CCceECCcceeC
Confidence                                                       89999999999999999999864  445799999999


Q ss_pred             Cc-ccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCC
Q psy2130         364 PL-ELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSE  442 (470)
Q Consensus       364 p~-~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~  442 (470)
                      |. .||+.++.... .....|+|+|||+|.|. ..+|||+||+|..+.||+|||+.|++|++++|            ...
T Consensus       275 p~~~l~l~~~~~~~-~~~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~W~~~nD~~V~~v~~~~v------------~~~  340 (355)
T 3i3t_A          275 PLQRLSLGDFASDK-AGSPVYQLYALCNHSGS-VHYGHYTALCRCQTGWHVYNDSRVSPVSENQV------------ASS  340 (355)
T ss_dssp             CSSCEECGGGBC-----CCEEEEEEEEEEEEE-TTEEEEEEEEEETTEEEEEETTEEEEECHHHH------------HTS
T ss_pred             CccccCchhhccCC-CCCcceEEEEEEEecCC-CCCCeEEEEEEcCCeEEEEcCCCcEECCHHHc------------CCC
Confidence            95 59999887543 34578999999999996 99999999999999999999999999999988            367


Q ss_pred             cEEEEEEEecCCC
Q psy2130         443 TGYILFYQSRDST  455 (470)
Q Consensus       443 ~aYiLfY~r~~~~  455 (470)
                      +||||||+|++..
T Consensus       341 ~aYiLfY~r~~~~  353 (355)
T 3i3t_A          341 EGYVLFYQLMQEP  353 (355)
T ss_dssp             CCSEEEEEEC---
T ss_pred             CcEEEEEEeccCC
Confidence            9999999998754

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=100.00  E-value=3.1e-58  Score=457.46  Aligned_cols=297  Identities=26%  Similarity=0.450  Sum_probs=237.8

Q ss_pred             CCCccccccc-CCchhhhh--hhhccchHHHHHh------------------------------hhcCCccchhhHHHHH
Q psy2130          18 PNERYFGLVN-GKTCKEKE--DRIEKSQPFWEQT------------------------------SLQDKISLGWECSLIL   64 (470)
Q Consensus        18 ~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~------------------------------~~~~~~~~~~~~~~~~   64 (470)
                      ...+++||.| ||||||||  |+|+++|+|...+                              ..........+..|++
T Consensus         5 ~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~~   84 (348)
T 3nhe_A            5 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKT   84 (348)
T ss_dssp             -CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHHH
T ss_pred             CCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHHHHH
Confidence            3468999999 99999999  9999999993221                              1111112333447777


Q ss_pred             HhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCC-----CCCCCCCCCCCCchHHHHhhccc
Q psy2130          65 ELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGG-----GGDNHSSSGFEEPTWVHEIFQGI  139 (470)
Q Consensus        65 ~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~i~~~F~g~  139 (470)
                      ++. ...+.|.+++||||||||.+|||.||+|+.............  .+..     ....|........++|.++|+|+
T Consensus        85 ~l~-~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~  161 (348)
T 3nhe_A           85 QIQ-RYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPEN--LDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQ  161 (348)
T ss_dssp             HHH-HHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCC--CTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEE
T ss_pred             HHH-HhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccc--cccCCchHHHHHHHHHHHhhcCCccccccceE
Confidence            777 777899999999999999999999999997543322111000  0000     00001111134467899999999


Q ss_pred             cccceeccccCCcccccCCCcccccccCCC----CCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccC
Q psy2130         140 LTSETKCLNCETVSSKDEDFFDLQVDIKQN----TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIG  215 (470)
Q Consensus       140 ~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~~----~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~  215 (470)
                      +.++++|..|++++.+.++|++|+|+||..    .+|++||+.|+.+|.+++++.|.|++|+.+..+.            
T Consensus       162 ~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~------------  229 (348)
T 3nhe_A          162 LKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCI------------  229 (348)
T ss_dssp             EEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEE------------
T ss_pred             EEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEE------------
Confidence            999999999999999999999999999973    5999999999999999999999999999998888            


Q ss_pred             CCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHH
Q psy2130         216 PDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFI  295 (470)
Q Consensus       216 ~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~  295 (470)
                                                                                                      
T Consensus       230 --------------------------------------------------------------------------------  229 (348)
T 3nhe_A          230 --------------------------------------------------------------------------------  229 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCc-ccccccCCC
Q psy2130         296 TRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPL-ELRLFHLSD  374 (470)
Q Consensus       296 ~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~-~ldl~~~~~  374 (470)
                                                     ++..|.++|++|+|||+||.++.  ....|+...|.||. .||+.++..
T Consensus       230 -------------------------------k~~~i~~lP~vL~i~lkRf~~~~--~~~~K~~~~v~fp~~~ldl~~~~~  276 (348)
T 3nhe_A          230 -------------------------------KKFSIQRFPKILVLHLKRFSESR--IRTSKLTTFVNFPLRDLDLREFAS  276 (348)
T ss_dssp             -------------------------------EEEEEEECCSEEEEEECCBCCCS--SCCCBCCCCEECCSSCEECGGGBC
T ss_pred             -------------------------------EEEEeecCCceEEEEEEcccccC--CceeecCcceeccCCcCCHhhhcC
Confidence                                           88999999999999999998765  34589999999995 799999876


Q ss_pred             CCCCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEec
Q psy2130         375 DAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSR  452 (470)
Q Consensus       375 ~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~  452 (470)
                      .. .....|+|+|||+|.|. ..+|||+||+|.  +++||+|||+.|++|++++|            ...+||||||+|+
T Consensus       277 ~~-~~~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v------------~~~~aY~LfY~r~  342 (348)
T 3nhe_A          277 EN-TNHAVYNLYAVSNHSGT-TMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQV------------RTSDAYLLFYELA  342 (348)
T ss_dssp             TT-CCCCEEEEEEEEEEEEC-SSCEEEEEEEECTTTCCEEEEETTEEEEECGGGT------------CCTTEEEEEEEEC
T ss_pred             CC-CCCCcEEEEEEEEccCC-CCCcccEEEEccCCCCcEEEEeCCCceECCHHHc------------CCCCceEEEEEec
Confidence            53 34578999999999996 899999999997  68999999999999999988            4789999999999


Q ss_pred             CCCc
Q psy2130         453 DSTD  456 (470)
Q Consensus       453 ~~~~  456 (470)
                      +...
T Consensus       343 ~~~~  346 (348)
T 3nhe_A          343 SPPS  346 (348)
T ss_dssp             C---
T ss_pred             CCCC
Confidence            8653

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=100.00  E-value=6.3e-57  Score=448.37  Aligned_cols=285  Identities=25%  Similarity=0.437  Sum_probs=229.1

Q ss_pred             CCccccccc-CCchhhhh--hhhccchHHHHHhhhcCC-----------------------ccchhhHHHHHHhhcccCC
Q psy2130          19 NERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDK-----------------------ISLGWECSLILELDLCSSD   72 (470)
Q Consensus        19 ~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~-----------------------~~~~~~~~~~~~l~~~~~~   72 (470)
                      ..+++||.| ||||||||  |||+++|+|...+.....                       .....+..+++++.+   +
T Consensus         3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~~---~   79 (353)
T 1nb8_A            3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGW---E   79 (353)
T ss_dssp             CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTTSCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHHTC---C
T ss_pred             CCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCCCcccccHHHHHHHHHHHHhhcCCCCCCHHHHhhcCC---C
Confidence            467999999 99999999  999999999443321100                       011122355555542   6


Q ss_pred             CCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCc
Q psy2130          73 EFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETV  152 (470)
Q Consensus        73 ~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~  152 (470)
                      .|.++.||||||||.+|||.||+++..                          ....++|.++|+|++.++++|..|++.
T Consensus        80 ~~~~~~QqDA~EFl~~LLd~L~~~~~~--------------------------~~~~s~i~~~F~g~~~~~i~C~~C~~~  133 (353)
T 1nb8_A           80 TLDSFMQHDVQELCRVLLDNVENKMKG--------------------------TCVEGTIPKLFRGKMVSYIQCKEVDYR  133 (353)
T ss_dssp             BTTTTTTSCHHHHHHHHHHHHHHHTTT--------------------------STTTTHHHHHHCEEEEEEEEESSSCCE
T ss_pred             CCCcccchhHHHHHHHHHHHHHHHhcC--------------------------CCccchhhhhceeEEEEEEEeccCCCe
Confidence            789999999999999999999998742                          113568999999999999999999999


Q ss_pred             ccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCC
Q psy2130         153 SSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFG  232 (470)
Q Consensus       153 s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~g  232 (470)
                      +.+.++|++|+|+||...+|++||..|+.+|.+++++.|.|+.|+. ..+.                             
T Consensus       134 s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~~~~~C~~c~~-~~a~-----------------------------  183 (353)
T 1nb8_A          134 SDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGL-QEAE-----------------------------  183 (353)
T ss_dssp             EEEEEEESCEEECCTTCSBHHHHHHHHTCCEEECTTTCEECGGGCE-ECEE-----------------------------
T ss_pred             eceeeeeEEEEEEECCCcchHHHHHHhhCccccCCCccccCCcCcc-EeeE-----------------------------
Confidence            9999999999999999999999999999999999999999999964 4455                             


Q ss_pred             CcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCcccccc
Q psy2130         233 NTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQD  312 (470)
Q Consensus       233 ntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqD  312 (470)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (353)
T 1nb8_A          184 --------------------------------------------------------------------------------  183 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC-CCCCcceEEEEEEEe
Q psy2130         313 AHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA-VNPDRMYNLVAVVIH  391 (470)
Q Consensus       313 a~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~-~~~~~~Y~L~avV~H  391 (470)
                                    ++..|.++|++|+|||+||.++...+...|+...|.||+.|||.+++... ......|+|+|||+|
T Consensus       184 --------------k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H  249 (353)
T 1nb8_A          184 --------------KGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVH  249 (353)
T ss_dssp             --------------EEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEE
T ss_pred             --------------EEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhhhhcccCCCCCceEEEEEEEEE
Confidence                          78899999999999999999886555568999999999999999987653 234678999999999


Q ss_pred             ecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhh-hhcCCCCCC--CCCCCcEEEEEEEecCCCcc
Q psy2130         392 CGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIE-DFFGLTSDH--QKSSETGYILFYQSRDSTDA  457 (470)
Q Consensus       392 ~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~-~~~g~~~~~--~~~~~~aYiLfY~r~~~~~~  457 (470)
                      .|. ..+|||+||+|.  +++||+|||+.|++|++++|. ..+|+..+.  ...+.+||||||+|++..+.
T Consensus       250 ~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~~~~  319 (353)
T 1nb8_A          250 SGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLSE  319 (353)
T ss_dssp             ESS-TTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEETTTHHH
T ss_pred             eCC-CCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEECchhhh
Confidence            998 899999999995  689999999999999988774 466653210  01257899999999987554

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=100.00  E-value=4.1e-56  Score=451.28  Aligned_cols=299  Identities=24%  Similarity=0.323  Sum_probs=230.7

Q ss_pred             CCCccccccc-CCchhhhh--hhhccchHHHHHhhhcCC----------------------------ccchhhHHHHHHh
Q psy2130          18 PNERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDK----------------------------ISLGWECSLILEL   66 (470)
Q Consensus        18 ~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~----------------------------~~~~~~~~~~~~l   66 (470)
                      ....++||.| ||||||||  |||+++|+|...+.....                            .....+..|+++|
T Consensus        10 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~v~P~~~~~~l   89 (404)
T 2ayn_A           10 AMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFL   89 (404)
T ss_dssp             -CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHH
T ss_pred             ccCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCCCcCChHHHHHHH
Confidence            3568999999 99999999  999999999443322111                            0122233677777


Q ss_pred             hcccCCCCC------CcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhcccc
Q psy2130          67 DLCSSDEFD------NYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGIL  140 (470)
Q Consensus        67 ~~~~~~~f~------~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~  140 (470)
                      + ...+.|.      ++.||||||||.+|||.||+++........       .+......|........++|.++|+|++
T Consensus        90 ~-~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~-------~e~~~~~~~~~~~~~~~s~i~~~F~G~l  161 (404)
T 2ayn_A           90 H-MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSV-------KETDSSSASAATPSKKKSLIDQFFGVEF  161 (404)
T ss_dssp             H-HHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC-------------------------CCHHHHHTCEEE
T ss_pred             H-HhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcc-------cccchhhhhhhhccccCchhhhhccEEE
Confidence            7 6677776      589999999999999999999854321110       0011112233334456789999999999


Q ss_pred             ccceeccccCCcc--cccCCCcccccccCCC-CCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCC
Q psy2130         141 TSETKCLNCETVS--SKDEDFFDLQVDIKQN-TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPD  217 (470)
Q Consensus       141 ~~~~~C~~C~~~s--~~~~~f~~Lsl~i~~~-~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~  217 (470)
                      .++++|..|++++  .+.++|++|+|+||.. .+|++||+.|+.++ +    .+.|+.|+....+.              
T Consensus       162 ~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e~-l----~~~c~~c~~~~~~~--------------  222 (404)
T 2ayn_A          162 ETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEE-I----TKQSPTLQRNALYI--------------  222 (404)
T ss_dssp             EEEEEESSSCCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTEEC-C----CCEETTTTEECCEE--------------
T ss_pred             EEEEEecCCCCccCceeeccCceEEeecCCCcccHHHHHHHhcccc-e----eecchhhCCcccee--------------
Confidence            9999999999994  7999999999999975 68999999988743 3    48999999988777              


Q ss_pred             CCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHH
Q psy2130         218 RFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITR  297 (470)
Q Consensus       218 ~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~  297 (470)
                                                                                                      
T Consensus       223 --------------------------------------------------------------------------------  222 (404)
T 2ayn_A          223 --------------------------------------------------------------------------------  222 (404)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC-
Q psy2130         298 LRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA-  376 (470)
Q Consensus       298 l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~-  376 (470)
                                                   ++..|.++|++|+|||+||.++...+...|+...|.||..|||.+++... 
T Consensus       223 -----------------------------k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~  273 (404)
T 2ayn_A          223 -----------------------------KSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPEL  273 (404)
T ss_dssp             -----------------------------EEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHH
T ss_pred             -----------------------------eeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChhh
Confidence                                         88999999999999999999987666668999999999999998876421 


Q ss_pred             ------------------------------------------------CCCCcceEEEEEEEeecCCCCCcEEEEEEec-
Q psy2130         377 ------------------------------------------------VNPDRMYNLVAVVIHCGSGPNRGHYISIVKS-  407 (470)
Q Consensus       377 ------------------------------------------------~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~-  407 (470)
                                                                      ......|+|+|||+|.|.++++|||+||+|. 
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~  353 (404)
T 2ayn_A          274 QEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRK  353 (404)
T ss_dssp             HHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEE
T ss_pred             hhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECC
Confidence                                                            2345889999999999977999999999998 


Q ss_pred             CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEecCCCcc
Q psy2130         408 HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRDSTDA  457 (470)
Q Consensus       408 ~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~~~~~~  457 (470)
                      +++||+|||+.|++|++++|....|+.     .+.+||||||+|++....
T Consensus       354 ~~~W~~fnD~~V~~v~~~~v~~~~~g~-----~~~~aYiLfY~r~~~~~~  398 (404)
T 2ayn_A          354 QDEWIKFDDDKVSIVTPEDILRLSGGG-----DWHIAYVLLYGPRRVEIM  398 (404)
T ss_dssp             TTEEEEEBTTBCCCBCHHHHGGGGSSS-----SSCEEEEEEEECC-----
T ss_pred             CCeEEEeecccceecCHHHHHhhhCCC-----CCceEEEEEEEecCCCCC
Confidence            899999999999999999997655442     367999999999987543

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=100.00  E-value=2.3e-54  Score=447.20  Aligned_cols=285  Identities=30%  Similarity=0.514  Sum_probs=232.6

Q ss_pred             CCCccccccc-CCchhhhh--hhhccchHHHHHhhhc-----------------------------CC-----------c
Q psy2130          18 PNERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQ-----------------------------DK-----------I   54 (470)
Q Consensus        18 ~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~-----------------------------~~-----------~   54 (470)
                      ...|++||.| ||||||||  |+|+++|+|...+...                             ..           .
T Consensus       137 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~  216 (476)
T 3mhs_A          137 RRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTN  216 (476)
T ss_dssp             GTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCC
T ss_pred             CCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhccccccccccccccc
Confidence            4578999999 99999999  9999999993222110                             00           0


Q ss_pred             cchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHH
Q psy2130          55 SLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHE  134 (470)
Q Consensus        55 ~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~  134 (470)
                      .......++..++ +..+.|.+++||||||||.+|||.||+++..........             +........++|.+
T Consensus       217 ~~~~~~~~l~~~~-~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~-------------~~~~~~~~~s~i~~  282 (476)
T 3mhs_A          217 RQTGFIYLLTCAW-KINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEV-------------SRANNKQCECIVHT  282 (476)
T ss_dssp             SCHHHHHHHHHHH-HHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC--------------------CCCSCCSHHHH
T ss_pred             CcchHHHHHHHHH-HhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccc-------------cccccccCCCccee
Confidence            0000113444444 677899999999999999999999999987554321110             11122346789999


Q ss_pred             hhccccccceeccccCCccc-ccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccc
Q psy2130         135 IFQGILTSETKCLNCETVSS-KDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKE  213 (470)
Q Consensus       135 ~F~g~~~~~~~C~~C~~~s~-~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~  213 (470)
                      +|+|++.++++|..|++++. +.++|++|+|+||...+|++||+.|+++|.+++ +.|.|++|+.+..+.          
T Consensus       283 ~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~-~~~~C~~C~~~~~a~----------  351 (476)
T 3mhs_A          283 VFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKD-FNYHCGECNSTQDAI----------  351 (476)
T ss_dssp             HSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTTCCBHHHHHHHHHCCEECSS-CCCEETTTTEECCCE----------
T ss_pred             ecceEEEEEEEECCCCCeeCCcccchhhhccchhhhhHHHHHHHHhcChhhccC-CCCcCCccCCcccEE----------
Confidence            99999999999999999974 499999999999999999999999999999975 449999999998888          


Q ss_pred             cCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHH
Q psy2130         214 IGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKK  293 (470)
Q Consensus       214 ~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~  293 (470)
                                                                                                      
T Consensus       352 --------------------------------------------------------------------------------  351 (476)
T 3mhs_A          352 --------------------------------------------------------------------------------  351 (476)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCC
Q psy2130         294 FITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLS  373 (470)
Q Consensus       294 ~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~  373 (470)
                                                       ++..|.++|++|+|+|+||.++.. +...|+...|.||+.|||.++.
T Consensus       352 ---------------------------------k~~~i~~lP~vL~i~LkRF~~~~~-~~~~K~~~~V~fP~~Ldl~~~~  397 (476)
T 3mhs_A          352 ---------------------------------KQLGIHKLPSVLVLQLKRFEHLLN-GSNRKLDDFIEFPTYLNMKNYC  397 (476)
T ss_dssp             ---------------------------------EEEEEEEBCSEEEEEECCEEECTT-SCEEECCCCCBCCSEEECGGGB
T ss_pred             ---------------------------------EEEEcccCCcceEEEeeeccccCC-CCeEECCEEEcCCCeeechhhc
Confidence                                             889999999999999999998643 3458999999999999999887


Q ss_pred             CCCC---------CCCcceEEEEEEEeecCCCCCcEEEEEEec-CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCc
Q psy2130         374 DDAV---------NPDRMYNLVAVVIHCGSGPNRGHYISIVKS-HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSET  443 (470)
Q Consensus       374 ~~~~---------~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~-~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~  443 (470)
                      ....         .....|+|+|||+|.|. .++|||++|+|. +++||+|||+.|++|++++|            ...+
T Consensus       398 ~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v------------~~~~  464 (476)
T 3mhs_A          398 STKEKDKHSENGKVPDIIYELIGIVSHKGT-VNEGHYIAFCKISGGQWFKFNDSMVSSISQEEV------------LKEQ  464 (476)
T ss_dssp             SCCBCCC--CCCBCCCEEEEEEEEEEEEEC-SSSEEEEEEEECTTSCEEEEETTEEEEECHHHH------------TTSC
T ss_pred             CcccccccccccCCCCCcEEEEEEEEeCCC-CCCCceEEEEECCCCcEEEEeCCceEECCHHHh------------ccCC
Confidence            6532         24578999999999997 999999999996 68999999999999999998            4689


Q ss_pred             EEEEEEEecCC
Q psy2130         444 GYILFYQSRDS  454 (470)
Q Consensus       444 aYiLfY~r~~~  454 (470)
                      ||||||+|++.
T Consensus       465 aYiLfY~r~~~  475 (476)
T 3mhs_A          465 AYLLFYTIRQV  475 (476)
T ss_dssp             EEEEEEEEEEE
T ss_pred             cEEEEEEEecC
Confidence            99999999874

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=100.00  E-value=2.4e-54  Score=439.61  Aligned_cols=272  Identities=22%  Similarity=0.333  Sum_probs=221.1

Q ss_pred             CCCccccccc-CCchhhhh--hhhccchHHHHHhhhcCC---------------------------------ccchhhHH
Q psy2130          18 PNERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDK---------------------------------ISLGWECS   61 (470)
Q Consensus        18 ~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~---------------------------------~~~~~~~~   61 (470)
                      ...+++||.| ||||||||  |||+++|+|...+.....                                 .....+..
T Consensus        20 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~~   99 (415)
T 1vjv_A           20 FAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVV   99 (415)
T ss_dssp             CCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHH
T ss_pred             cCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHHH
Confidence            3568999999 99999999  999999999333321110                                 02223336


Q ss_pred             HHHHhhcccCCCCC-------CcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHH
Q psy2130          62 LILELDLCSSDEFD-------NYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHE  134 (470)
Q Consensus        62 ~~~~l~~~~~~~f~-------~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~  134 (470)
                      |+++|+ ...+.|.       ++.||||||||.+||+.|++++..                              ++|.+
T Consensus       100 ~~~~l~-~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~------------------------------~~i~~  148 (415)
T 1vjv_A          100 LLNTLR-KCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD------------------------------KFSED  148 (415)
T ss_dssp             HHHHHH-HHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH------------------------------HHHTT
T ss_pred             HHHHHH-HhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc------------------------------chHHH
Confidence            777777 6677887       899999999999999999999841                              77999


Q ss_pred             hhccccccceeccccCCcc--cccCCCcccccccCCC-CCHHHHhccCCccccccCCCccccCCccccccccCCCccccc
Q psy2130         135 IFQGILTSETKCLNCETVS--SKDEDFFDLQVDIKQN-TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALE  211 (470)
Q Consensus       135 ~F~g~~~~~~~C~~C~~~s--~~~~~f~~Lsl~i~~~-~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~  211 (470)
                      +|+ ++.++++|..|++++  .+.++|++|+|+||.. .+|++||..|+.++ +    .+.|+.|+....+.        
T Consensus       149 ~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e~-i----~~~c~~c~~~~~a~--------  214 (415)
T 1vjv_A          149 FRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNEK-I----EKRSDLTGANSIYS--------  214 (415)
T ss_dssp             TCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTTCCBHHHHHHHHHEEC--------------CCCCEE--------
T ss_pred             HHH-hheEEEEECCCCCCccccccccceeeeeccccccchHHHHHHHHhhhh-h----hhcccccCCcccEE--------
Confidence            999 999999999999996  5999999999999975 58999999988744 3    48999999988777        


Q ss_pred             cccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccCh
Q psy2130         212 KEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAP  291 (470)
Q Consensus       212 ~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p  291 (470)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (415)
T 1vjv_A          215 --------------------------------------------------------------------------------  214 (415)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCccccccc
Q psy2130         292 KKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFH  371 (470)
Q Consensus       292 ~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~  371 (470)
                                                         ++..|.++|++|+|||+||.++...+...|+...|.||..|||.+
T Consensus       215 -----------------------------------k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~  259 (415)
T 1vjv_A          215 -----------------------------------VEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVAD  259 (415)
T ss_dssp             -----------------------------------EEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGG
T ss_pred             -----------------------------------EEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHH
Confidence                                               899999999999999999999876666789999999999999988


Q ss_pred             CCCCC---------------------------------------------------------------------------
Q psy2130         372 LSDDA---------------------------------------------------------------------------  376 (470)
Q Consensus       372 ~~~~~---------------------------------------------------------------------------  376 (470)
                      ++...                                                                           
T Consensus       260 ~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (415)
T 1vjv_A          260 MLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKG  339 (415)
T ss_dssp             GBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTT
T ss_pred             hcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhhhhhcccccccccccc
Confidence            76421                                                                           


Q ss_pred             CCCCcceEEEEEEEeecCCCCCcEEEEEEec---CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEecC
Q psy2130         377 VNPDRMYNLVAVVIHCGSGPNRGHYISIVKS---HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRD  453 (470)
Q Consensus       377 ~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~---~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~~  453 (470)
                      ......|+|+|||+|.|.++.+|||+||+|.   +++||+|||+.|++|++++|....|+.     .+.+||||||+|++
T Consensus       340 ~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~-----~~~~aYiLfY~r~~  414 (415)
T 1vjv_A          340 ENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGG-----ESDSALILMYKGFG  414 (415)
T ss_dssp             BCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCT-----TSCEEEEEEEEETT
T ss_pred             cCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCC-----CcceEEEEEEEecC
Confidence            1244789999999999977999999999998   789999999999999999997765442     36789999999986


Q ss_pred             C
Q psy2130         454 S  454 (470)
Q Consensus       454 ~  454 (470)
                      .
T Consensus       415 l  415 (415)
T 1vjv_A          415 L  415 (415)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=100.00  E-value=1.5e-53  Score=445.13  Aligned_cols=286  Identities=25%  Similarity=0.435  Sum_probs=232.0

Q ss_pred             CCccccccc-CCchhhhh--hhhccchHHHHHhhhcCC----c-------------------cchhhHHHHHHhhcccCC
Q psy2130          19 NERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDK----I-------------------SLGWECSLILELDLCSSD   72 (470)
Q Consensus        19 ~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~----~-------------------~~~~~~~~~~~l~~~~~~   72 (470)
                      ..+++||.| ||||||||  |||+++|+|...+.....    .                   ....+..|++++.   .+
T Consensus       172 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~---~~  248 (522)
T 2f1z_A          172 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG---WE  248 (522)
T ss_dssp             TTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCSSCTTTCHHHHHHHHHHHHHHCSSCBCCTTHHHHTC---CC
T ss_pred             cCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccCCcccchHHHHHHHHHHHHhcCCCccCcHHHHhhcC---Cc
Confidence            468999999 99999999  999999999443321110    0                   1111123444443   25


Q ss_pred             CCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCc
Q psy2130          73 EFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETV  152 (470)
Q Consensus        73 ~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~  152 (470)
                      .|.++.||||||||.+|||.||+++...                          ...++|.++|+|++.++++|..|++.
T Consensus       249 ~~~~~~QqDa~Efl~~LLd~L~~~l~~~--------------------------~~~s~i~~lF~G~~~s~i~C~~C~~~  302 (522)
T 2f1z_A          249 TLDSFMQHDVQELCRVLLDNVENKMKGT--------------------------CVEGTIPKLFRGKMVSYIQCKEVDYR  302 (522)
T ss_dssp             TTTSSTTSCHHHHHHHHHHHHHHHHTTS--------------------------TTTTHHHHHHCEEEEEEECCSSSCCC
T ss_pred             cCCCcccccHHHHHHHHHHHHHhhccCC--------------------------ccccchhhheeEEEEEEEEcCCCCce
Confidence            7899999999999999999999988421                          13468999999999999999999999


Q ss_pred             ccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCC
Q psy2130         153 SSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFG  232 (470)
Q Consensus       153 s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~g  232 (470)
                      +.+.++|++|+|+||...+|++||..|+.+|.+++++.|.|+.|+. ..+.                             
T Consensus       303 s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~n~~~C~~c~~-~~a~-----------------------------  352 (522)
T 2f1z_A          303 SDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGL-QEAE-----------------------------  352 (522)
T ss_dssp             CCEEEEESCEEECCTTCCBHHHHHHHHTCEEEECTTSCBCCGGGCS-BCEE-----------------------------
T ss_pred             eeeeeeeEEEEEEeCCcccchHHHHHhhceeecCCcceeecCcCCc-cceE-----------------------------
Confidence            9999999999999999999999999999999999999999999964 4455                             


Q ss_pred             CcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCcccccc
Q psy2130         233 NTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQD  312 (470)
Q Consensus       233 ntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqD  312 (470)
                                                                                                      
T Consensus       353 --------------------------------------------------------------------------------  352 (522)
T 2f1z_A          353 --------------------------------------------------------------------------------  352 (522)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC-CCCCcceEEEEEEEe
Q psy2130         313 AHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA-VNPDRMYNLVAVVIH  391 (470)
Q Consensus       313 a~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~-~~~~~~Y~L~avV~H  391 (470)
                                    ++..|.++|++|+|||+||.++...+...|+...|.||+.|||.+++... ......|+|+|||+|
T Consensus       353 --------------k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H  418 (522)
T 2f1z_A          353 --------------KGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVH  418 (522)
T ss_dssp             --------------EEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEE
T ss_pred             --------------EEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchhhhccccCCCCcEEEEEEEEEe
Confidence                          78899999999999999999987655668999999999999999987653 234678999999999


Q ss_pred             ecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhh-hhcCCCCCC--CCCCCcEEEEEEEecCCCccc
Q psy2130         392 CGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIE-DFFGLTSDH--QKSSETGYILFYQSRDSTDAR  458 (470)
Q Consensus       392 ~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~-~~~g~~~~~--~~~~~~aYiLfY~r~~~~~~~  458 (470)
                      .|. .++|||+||+|.  +++||+|||+.|+++++++|. ..+|+..+.  .....+||||||+|++..+..
T Consensus       419 ~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~~~~~  489 (522)
T 2f1z_A          419 SGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLSEV  489 (522)
T ss_dssp             ECS-SSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEETTSHHHH
T ss_pred             ccc-CCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEECCchHHh
Confidence            998 799999999995  689999999999999988774 466653210  012578999999999876543

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.4e-51  Score=446.12  Aligned_cols=198  Identities=21%  Similarity=0.279  Sum_probs=168.5

Q ss_pred             CCccccccc-CCchhhhh--hhhccchHHHHHh------------------------------hhcC-------------
Q psy2130          19 NERYFGLVN-GKTCKEKE--DRIEKSQPFWEQT------------------------------SLQD-------------   52 (470)
Q Consensus        19 ~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~------------------------------~~~~-------------   52 (470)
                      +.+++||.| ||||||||  |+|+++|+|...+                              ....             
T Consensus       341 ~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~  420 (854)
T 3ihp_A          341 GPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGER  420 (854)
T ss_dssp             STTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC-------------
T ss_pred             CCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhcccccccccccccccc
Confidence            578999999 99999999  9999999992211                              1000             


Q ss_pred             ------CccchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCC
Q psy2130          53 ------KISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGF  126 (470)
Q Consensus        53 ------~~~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (470)
                            ......+..|++.++ ...+.|.+++||||||||.+||+.||+++..                           
T Consensus       421 ~~~~~~~~~~isP~~f~~~l~-~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~---------------------------  472 (854)
T 3ihp_A          421 VPEQKEVQDGIAPRMFKALIG-KGHPEFSTNRQQDAQEFFLHLINMVERNCRS---------------------------  472 (854)
T ss_dssp             --------CCBCCHHHHHHHT-TTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT---------------------------
T ss_pred             ccccccCCCccChHHHHHHHh-hhccccccccccCHHHHHHHHHHHHHHHhcc---------------------------
Confidence                  001223337888888 7889999999999999999999999997631                           


Q ss_pred             CCchHHHHhhccccccceeccccCCcccccCCCcccccccCCC--------------------------------CCHHH
Q psy2130         127 EEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQN--------------------------------TSITQ  174 (470)
Q Consensus       127 ~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~~--------------------------------~sl~~  174 (470)
                        .+.|.++|+|+++++++|..|++++.+.++|++|+|+||..                                .+|++
T Consensus       473 --~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~d  550 (854)
T 3ihp_A          473 --SENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSS  550 (854)
T ss_dssp             --SCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHH
T ss_pred             --cCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHH
Confidence              23477999999999999999999999999999999999952                                59999


Q ss_pred             HhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHH
Q psy2130         175 CLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRV  254 (470)
Q Consensus       175 ~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i  254 (470)
                      ||+.|+.+|.++   .|.|++|+.+..+.                                                   
T Consensus       551 cL~~f~~~E~Le---~y~C~~C~~k~~a~---------------------------------------------------  576 (854)
T 3ihp_A          551 CLEAYGAPEQVD---DFWSTALQAKSVAV---------------------------------------------------  576 (854)
T ss_dssp             HHHHHHSCEEEE---EEEETTTTEEEEEE---------------------------------------------------
T ss_pred             HHHHhcCceEee---eeeccccCCcceee---------------------------------------------------
Confidence            999999999994   49999999999888                                                   


Q ss_pred             hccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCC
Q psy2130         255 LEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKL  334 (470)
Q Consensus       255 ~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~l  334 (470)
                                                                                              ++..|.++
T Consensus       577 ------------------------------------------------------------------------K~~~i~~l  584 (854)
T 3ihp_A          577 ------------------------------------------------------------------------KTTRFASF  584 (854)
T ss_dssp             ------------------------------------------------------------------------EEEEESSC
T ss_pred             ------------------------------------------------------------------------EEEEeeeC
Confidence                                                                                    99999999


Q ss_pred             CceEEEEeeeeeeeccccccccccceEecCcccccccCC
Q psy2130         335 PMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLS  373 (470)
Q Consensus       335 P~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~  373 (470)
                      |++|+|||+||.++.. ....|+...|.||+.|||.++.
T Consensus       585 P~vLiihLkRF~~d~~-~~~~Ki~~~V~FP~~LDl~~y~  622 (854)
T 3ihp_A          585 PDYLVIQIKKFTFGLD-WVPKKLDVSIEMPEELDISQLR  622 (854)
T ss_dssp             CSEEEEEECCEEECGG-GCEEECCEECCCCSEEECGGGB
T ss_pred             CceEEEEeehheecCC-CceEECCeEEecCCcEehHHhc
Confidence            9999999999999755 4558999999999999998774

>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}

Probab=99.96  E-value=3.9e-29  Score=239.69  Aligned_cols=177  Identities=26%  Similarity=0.422  Sum_probs=143.8

Q ss_pred             CccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccccc--ChHHHHHHH-HHHHHHHHhCCCCCCccChHHHHHHHhh
Q psy2130         224 RYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKK--NKETLLSCL-ADLFHNIATHKKKVGSIAPKKFITRLRK  300 (470)
Q Consensus       224 ~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~--~~~~l~~~l-~~l~~~l~~~~~~~~~~~p~~~~~~l~~  300 (470)
                      .+.||+|+||||||||+||+|+++|++++.++.++.....  ....+...| ++++..|..     ..+.|..++..|++
T Consensus         8 ~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk-----~~~~P~~~l~~LR~   82 (374)
T 2vhf_A            8 KKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI-----YGYVCATKIMKLRK   82 (374)
T ss_dssp             ESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH-----TSEECHHHHHHHHH
T ss_pred             CCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh-----cCCCcHHHHHHHHH
Confidence            5789999999999999999999999999999988655433  234688888 899999986     67889999999999


Q ss_pred             ccCcCC-----ccccccHHHHHHHHHHHHHh---------------------------------------------hhhh
Q psy2130         301 EKDEFD-----NYMQQDAHEFLNFLINHINE---------------------------------------------KCMK  330 (470)
Q Consensus       301 ~~~~~~-----~~~QqDa~E~~~~ll~~L~~---------------------------------------------~~~~  330 (470)
                      ..+.|.     .+.||||+|||..|+..|..                                             ..+.
T Consensus        83 ~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~~~~~~~~~~~q~f~E~~e~~~~e~~~qL~e~nfl~~gik  162 (374)
T 2vhf_A           83 ILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFMEKNEKVGVPTIQQLLEWSFINSNLK  162 (374)
T ss_dssp             HHHHHC--------CCCHHHHHHHHHTTTTCCCCSEEEEETTCCCEEESCEECCCCCC--CCCCBHHHHHHHHHHHHTEE
T ss_pred             HhHHHhcccCCCccccCHHHHHHHHHHHHhhcccccccccccccccccHHHHHhcCcccccCCcHHHHhhhHHHHHcCCe
Confidence            877775     47899999999999996644                                             3345


Q ss_pred             hcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC----------------------------------
Q psy2130         331 VKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA----------------------------------  376 (470)
Q Consensus       331 i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~----------------------------------  376 (470)
                      |.++|++|+||+.||      ++..|+..+|.||.+||+.+++.+.                                  
T Consensus       163 isrLP~yLtVq~vRF------gKkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~  236 (374)
T 2vhf_A          163 FAEAPSCLIIQMPRF------GKDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCK  236 (374)
T ss_dssp             ESSCCSEEEEECCCC------SSSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECH
T ss_pred             eecCCcceEEeeecc------CccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccc
Confidence            899999999999999      3347999999999999986553210                                  


Q ss_pred             ----------------------------------CCCCcceEEEEEEEeecCCCCCcEEEEEEec---CCcEEEEeC
Q psy2130         377 ----------------------------------VNPDRMYNLVAVVIHCGSGPNRGHYISIVKS---HDFWLLFDD  416 (470)
Q Consensus       377 ----------------------------------~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~---~~~W~~~nD  416 (470)
                                                        .++...|+|.|||+     +++|||+||||.   +++|++||-
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDs  308 (374)
T 2vhf_A          237 TCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDS  308 (374)
T ss_dssp             HHHHHHTTSGGGTTCCCEECCC----------------CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEET
T ss_pred             hhhhhhhhhhhhhcccccccccCccccccccccCCCCceeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEec
Confidence                                              11237899999999     789999999996   589999985

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=99.70  E-value=4e-17  Score=161.24  Aligned_cols=107  Identities=32%  Similarity=0.519  Sum_probs=92.1

Q ss_pred             CCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccc-----ccChHHHHHHHHHHHHHHHhCCCCCCccChHHH
Q psy2130         220 PPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN-----KKNKETLLSCLADLFHNIATHKKKVGSIAPKKF  294 (470)
Q Consensus       220 ~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~-----~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~  294 (470)
                      +...|++||.|+||||||||+||+|+++|+|+++++......     ......+..++..++..++. ......++|..+
T Consensus         4 k~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~~~~~~p~~~   82 (348)
T 3nhe_A            4 KSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWT-SSPNDVVSPSEF   82 (348)
T ss_dssp             --CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTT-CCTTCEECCHHH
T ss_pred             CCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHc-CCCCCccCHHHH
Confidence            456789999999999999999999999999999998743322     23567899999999999986 334568999999


Q ss_pred             HHHHhhccCcCCccccccHHHHHHHHHHHHHhh
Q psy2130         295 ITRLRKEKDEFDNYMQQDAHEFLNFLINHINEK  327 (470)
Q Consensus       295 ~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~  327 (470)
                      +.++....+.|..++||||+||+..|++.|++.
T Consensus        83 ~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e  115 (348)
T 3nhe_A           83 KTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNE  115 (348)
T ss_dssp             HHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999973

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=99.70  E-value=3.5e-17  Score=162.99  Aligned_cols=107  Identities=30%  Similarity=0.487  Sum_probs=91.7

Q ss_pred             CCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccc-------ccChHHHHHHHHHHHHHHHhCCCCCCccChH
Q psy2130         220 PPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN-------KKNKETLLSCLADLFHNIATHKKKVGSIAPK  292 (470)
Q Consensus       220 ~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~-------~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~  292 (470)
                      +..+|++||.|+||||||||+||+|+++|+|+++++......       ......+..+++.|+..|+....  ..+.|.
T Consensus         3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~--~~i~P~   80 (367)
T 2y6e_A            3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRD--AHVAPR   80 (367)
T ss_dssp             -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSC--SEECCH
T ss_pred             CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCC--CCcCHH
Confidence            346789999999999999999999999999999998743221       11245789999999999987643  579999


Q ss_pred             HHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhh
Q psy2130         293 KFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKC  328 (470)
Q Consensus       293 ~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~  328 (470)
                      .|+.+++...+.|..++||||+||+..||+.|++..
T Consensus        81 ~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l  116 (367)
T 2y6e_A           81 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDL  116 (367)
T ss_dssp             HHHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999743

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=99.68  E-value=6.1e-17  Score=160.33  Aligned_cols=103  Identities=31%  Similarity=0.514  Sum_probs=87.4

Q ss_pred             CccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccc----ccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHh
Q psy2130         224 RYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN----KKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLR  299 (470)
Q Consensus       224 ~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~----~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~  299 (470)
                      |++||.|+||||||||+||+|+++|+|+++++......    ......+..+++.++..++..... ..++|..++.+++
T Consensus         2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~-~~v~p~~~~~~l~   80 (355)
T 3i3t_A            2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSC-EAVNPTRFRAVFQ   80 (355)
T ss_dssp             -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSC-CCBCCHHHHHHHH
T ss_pred             CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCC-CcccHHHHHHHHH
Confidence            78999999999999999999999999999998643321    223457899999999999876542 4699999999999


Q ss_pred             hccCcCCccccccHHHHHHHHHHHHHhh
Q psy2130         300 KEKDEFDNYMQQDAHEFLNFLINHINEK  327 (470)
Q Consensus       300 ~~~~~~~~~~QqDa~E~~~~ll~~L~~~  327 (470)
                      ...+.|..++||||+||+.+||+.|++.
T Consensus        81 ~~~~~f~~~~QqDA~Efl~~LLd~L~~e  108 (355)
T 3i3t_A           81 KYVPSFSGYSQQDAQEFLKLLMERLHLE  108 (355)
T ss_dssp             HHCGGGCSSCCCBHHHHHHHHHHHHHHH
T ss_pred             HhChhhCCCCccCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999973

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=99.67  E-value=1.3e-16  Score=161.53  Aligned_cols=106  Identities=30%  Similarity=0.472  Sum_probs=91.7

Q ss_pred             CCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccccc---------ChHHHHHHHHHHHHHHHhCCCCCCccC
Q psy2130         220 PPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKK---------NKETLLSCLADLFHNIATHKKKVGSIA  290 (470)
Q Consensus       220 ~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~---------~~~~l~~~l~~l~~~l~~~~~~~~~~~  290 (470)
                      +...+++||.|+||||||||+||+|+++|+|+++++.+......         ....+..+|+.+|..|+...  ...++
T Consensus        19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~--~~~v~   96 (415)
T 1vjv_A           19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKS--FKSVL   96 (415)
T ss_dssp             CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC---CCEEC
T ss_pred             ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCC--CCccC
Confidence            34668999999999999999999999999999999986654321         15589999999999999754  35899


Q ss_pred             hHHHHHHHhhccCcCC-------ccccccHHHHHHHHHHHHHhh
Q psy2130         291 PKKFITRLRKEKDEFD-------NYMQQDAHEFLNFLINHINEK  327 (470)
Q Consensus       291 p~~~~~~l~~~~~~~~-------~~~QqDa~E~~~~ll~~L~~~  327 (470)
                      |..|+..++...+.|.       .+.||||+||+..||+.|++.
T Consensus        97 p~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~  140 (415)
T 1vjv_A           97 PVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIV  140 (415)
T ss_dssp             CHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHH
Confidence            9999999999988887       799999999999999999964

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=99.66  E-value=1.3e-16  Score=160.35  Aligned_cols=104  Identities=31%  Similarity=0.453  Sum_probs=90.1

Q ss_pred             CCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccc-------ccChHHHHHHHHHHHHHHHhCCCCCCccChHHH
Q psy2130         222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN-------KKNKETLLSCLADLFHNIATHKKKVGSIAPKKF  294 (470)
Q Consensus       222 ~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~-------~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~  294 (470)
                      ..+++||.|+||||||||+||+|+++|+|+++++......       ......+...+..++..++...  ...++|..|
T Consensus        59 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~--~~~i~P~~f  136 (396)
T 2gfo_A           59 GPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQ--YRYISPKDF  136 (396)
T ss_dssp             STTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSC--EEEECCHHH
T ss_pred             CCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCC--CceECHHHH
Confidence            5789999999999999999999999999999998743211       1234578888999999999865  357999999


Q ss_pred             HHHHhhccCcCCccccccHHHHHHHHHHHHHhh
Q psy2130         295 ITRLRKEKDEFDNYMQQDAHEFLNFLINHINEK  327 (470)
Q Consensus       295 ~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~  327 (470)
                      +.+++...+.|..++||||+||+.+||+.|++.
T Consensus       137 ~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~e  169 (396)
T 2gfo_A          137 KITIGKINDQFAGYSQQDSQELLLFLMDGLHED  169 (396)
T ss_dssp             HHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhchhhcCCCCCChHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999973

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=99.66  E-value=1.3e-16  Score=160.97  Aligned_cols=103  Identities=28%  Similarity=0.463  Sum_probs=90.1

Q ss_pred             CCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccc--c---ccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHH
Q psy2130         222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAK--N---KKNKETLLSCLADLFHNIATHKKKVGSIAPKKFIT  296 (470)
Q Consensus       222 ~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~--~---~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~  296 (470)
                      ...++||.|+||||||||+||+|+++|+|+++++.+...  .   .....++..+|+.||..|+...   ..+.|..|+.
T Consensus        11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~---~~v~P~~~~~   87 (404)
T 2ayn_A           11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS---SSIPPIILLQ   87 (404)
T ss_dssp             CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHC---SEECCHHHHH
T ss_pred             cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCC---CcCChHHHHH
Confidence            567899999999999999999999999999999987654  1   1236789999999999999753   6899999999


Q ss_pred             HHhhccCcCC------ccccccHHHHHHHHHHHHHhh
Q psy2130         297 RLRKEKDEFD------NYMQQDAHEFLNFLINHINEK  327 (470)
Q Consensus       297 ~l~~~~~~~~------~~~QqDa~E~~~~ll~~L~~~  327 (470)
                      +++...+.|.      .+.||||+||+..||+.|++.
T Consensus        88 ~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~  124 (404)
T 2ayn_A           88 FLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQK  124 (404)
T ss_dssp             HHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHH
Confidence            9999888886      489999999999999999963

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=99.65  E-value=2.8e-16  Score=155.55  Aligned_cols=100  Identities=26%  Similarity=0.531  Sum_probs=85.0

Q ss_pred             CCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhc
Q psy2130         222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKE  301 (470)
Q Consensus       222 ~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~  301 (470)
                      ..|++||.|+||||||||+||+|+++|+|++.++............+..+|+.+|..|+...   ..+.|..++..+.  
T Consensus         3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~l~~~~~--   77 (353)
T 1nb8_A            3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSFG--   77 (353)
T ss_dssp             CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTTSCTTTCHHHHHHHHHHHHHHCS---SCBCCHHHHHHHT--
T ss_pred             CCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCCCcccccHHHHHHHHHHHHhhcC---CCCCCHHHHhhcC--
Confidence            46899999999999999999999999999999987654444445678889999999999765   3567888887764  


Q ss_pred             cCcCCccccccHHHHHHHHHHHHHh
Q psy2130         302 KDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       302 ~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      .+.|..+.||||+||+.+||+.|++
T Consensus        78 ~~~~~~~~QqDA~EFl~~LLd~L~~  102 (353)
T 1nb8_A           78 WETLDSFMQHDVQELCRVLLDNVEN  102 (353)
T ss_dssp             CCBTTTTTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCcccchhHHHHHHHHHHHHHH
Confidence            3678899999999999999999996

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=99.61  E-value=2e-15  Score=164.39  Aligned_cols=108  Identities=31%  Similarity=0.504  Sum_probs=92.3

Q ss_pred             CCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccc-----ccccChHHHHHHHHHHHHHHHhCC------------
Q psy2130         221 PNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKA-----KNKKNKETLLSCLADLFHNIATHK------------  283 (470)
Q Consensus       221 ~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~-----~~~~~~~~l~~~l~~l~~~l~~~~------------  283 (470)
                      ...|++||.|+||||||||+||+|+++|+|+++++....     ........+..+|+.++..|+...            
T Consensus       340 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~  419 (854)
T 3ihp_A          340 FGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGE  419 (854)
T ss_dssp             CSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC------------
T ss_pred             cCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccccc
Confidence            367999999999999999999999999999999985322     233456789999999999998754            


Q ss_pred             ------CCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhh
Q psy2130         284 ------KKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKC  328 (470)
Q Consensus       284 ------~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~  328 (470)
                            .....+.|..|+..++...+.|..++||||+||+.+||+.|++..
T Consensus       420 ~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el  470 (854)
T 3ihp_A          420 RVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNC  470 (854)
T ss_dssp             ---------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTC
T ss_pred             cccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHh
Confidence                  345689999999999999999999999999999999999999643

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.57  E-value=3.7e-15  Score=155.17  Aligned_cols=103  Identities=25%  Similarity=0.502  Sum_probs=84.1

Q ss_pred             CCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHH
Q psy2130         219 FPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRL  298 (470)
Q Consensus       219 ~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l  298 (470)
                      .+...+++||.|+||||||||+||+|+++|+||+.++............+..+|+.+|..|+...   ..+.|..++..+
T Consensus       169 ~~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~l~~~~  245 (522)
T 2f1z_A          169 SKKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSF  245 (522)
T ss_dssp             TTTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCSSCTTTCHHHHHHHHHHHHHHCS---SCBCCTTHHHHT
T ss_pred             ccccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccCCcccchHHHHHHHHHHHHhcCC---CccCcHHHHhhc
Confidence            34567899999999999999999999999999999987654444445678889999999999865   356777777665


Q ss_pred             hhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130         299 RKEKDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       299 ~~~~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      .  ...|..+.||||+||+..||+.|++
T Consensus       246 ~--~~~~~~~~QqDa~Efl~~LLd~L~~  271 (522)
T 2f1z_A          246 G--WETLDSFMQHDVQELCRVLLDNVEN  271 (522)
T ss_dssp             C--CCTTTSSTTSCHHHHHHHHHHHHHH
T ss_pred             C--CccCCCcccccHHHHHHHHHHHHHh
Confidence            3  3668899999999999999999996

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=99.56  E-value=7.2e-15  Score=151.39  Aligned_cols=106  Identities=27%  Similarity=0.448  Sum_probs=85.8

Q ss_pred             CCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccc----cccChHHHHHHHHHHHHHHHhCCCC-------CCcc
Q psy2130         221 PNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAK----NKKNKETLLSCLADLFHNIATHKKK-------VGSI  289 (470)
Q Consensus       221 ~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~----~~~~~~~l~~~l~~l~~~l~~~~~~-------~~~~  289 (470)
                      ...|++||.|+||||||||+||+|+++|+|+++++.....    ...+...+..++..++..++.....       ....
T Consensus       137 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~  216 (476)
T 3mhs_A          137 RRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTN  216 (476)
T ss_dssp             GTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCC
T ss_pred             CCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhccccccccccccccc
Confidence            4679999999999999999999999999999999864332    2234566888999999999875432       2245


Q ss_pred             ChHHHHHHH---hhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130         290 APKKFITRL---RKEKDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       290 ~p~~~~~~l---~~~~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      .|..+...+   ....+.|..++||||+||+.+||+.|++
T Consensus       217 ~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~  256 (476)
T 3mhs_A          217 RQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQ  256 (476)
T ss_dssp             SCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHH
Confidence            566655554   4788999999999999999999999996

>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}

Probab=99.04  E-value=1.6e-11  Score=118.03  Aligned_cols=76  Identities=20%  Similarity=0.204  Sum_probs=51.7

Q ss_pred             Cccccccc-CCchhhhh--hhhccchHHHHHhhhcCCccc------------------------hhhHHHHHHhhcccCC
Q psy2130          20 ERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKISL------------------------GWECSLILELDLCSSD   72 (470)
Q Consensus        20 ~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~~~------------------------~~~~~~~~~l~~~~~~   72 (470)
                      ..++||.| ||||||||  |||+.+|+++..+..-.....                        ..+..++..|+ +..|
T Consensus         7 g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk~~~~P~~~l~~LR-~~~p   85 (374)
T 2vhf_A            7 GKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRIYGYVCATKIMKLR-KILE   85 (374)
T ss_dssp             EESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHHTSEECHHHHHHHH-HHHH
T ss_pred             CCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH-HHhH
Confidence            46899999 99999999  999999999776644321110                        00113345555 4444


Q ss_pred             CCC-----CcccccHHHHHHHHHHHHHHH
Q psy2130          73 EFD-----NYMQQDAHEFLNFLINHINEV   96 (470)
Q Consensus        73 ~f~-----~~~QqDA~Efl~~LLd~L~ee   96 (470)
                      +|.     +++||||+||+..||..|...
T Consensus        86 Qfae~~G~~~~QQDaEE~~t~Ll~~L~~~  114 (374)
T 2vhf_A           86 KVEAASGFTSEEKDPEEFLNILFHHILRV  114 (374)
T ss_dssp             HHC--------CCCHHHHHHHHHTTTTCC
T ss_pred             HHhcccCCCccccCHHHHHHHHHHHHhhc
Confidence            442     479999999999999988763

>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R

Probab=94.49  E-value=0.031  Score=45.23  Aligned_cols=38  Identities=16%  Similarity=0.221  Sum_probs=30.6

Q ss_pred             EEEEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceeeechh
Q psy2130         384 NLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQS  425 (470)
Q Consensus       384 ~L~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~  425 (470)
                      +.+|-|.-.|.    +|-+-++-.+..||.+||+.+.+-.++
T Consensus       108 DfhAgIflkg~----eHAVFa~~TS~GWyaiDDe~fypwtPd  145 (167)
T 1qmy_A          108 DFHAGIFLKGQ----EHAVFACVTSNGWYAIDDEDFYPWTPD  145 (167)
T ss_dssp             GEEEEEEEETT----TEEEEEECCTTSSEEEETTEEEECCCC
T ss_pred             hhhhheeecCC----CceEEEEEccCceEEecccccccCCCC
Confidence            44677766665    699999999999999999999987543

>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}

Probab=93.96  E-value=0.056  Score=47.65  Aligned_cols=37  Identities=19%  Similarity=0.312  Sum_probs=30.7

Q ss_pred             EEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceeeechh
Q psy2130         386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQS  425 (470)
Q Consensus       386 ~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~  425 (470)
                      .+.+++.|. .++|||+.+....+  +.+|-..+.+++..
T Consensus       161 ~~~~vF~G~-~~~GHY~~~~~~~~--~~vDG~~~~~~~~~  197 (211)
T 3mp2_A          161 VMHAVYTGT-TQNGHYMVDDIEHG--YCVDGMGIKPLKKR  197 (211)
T ss_dssp             SEEEEEESC-TTTCEEEEEETTTT--EEEETTEEECCCCS
T ss_pred             eeEEEEEcC-CCCceEEEEecccc--eEEeCCceeEcccC
Confidence            577888998 89999999987766  89999988887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	470
d2ayna1	383	d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy	5e-20
d2ayna1	383	d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy	4e-14
d2ayna1	383	d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy	7e-05
d2gfoa1	348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	4e-19
d2gfoa1	348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	2e-15
d2gfoa1	348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	2e-12
d2hd5a1	336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	5e-19
d2hd5a1	336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	2e-12
d2hd5a1	336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	4e-11
d1nbfa_	347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	6e-18
d1nbfa_	347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	4e-13
d1nbfa_	347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	0.001
d1vjva_	397	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	7e-17
d1vjva_	397	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	1e-16

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.4 bits (220), Expect = 5e-20
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 14/118 (11%)

Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKN-----KETLLSCLADLFHNIAT 281
           GL N GNTCY N+ +Q +      +D +  Y    + +      + + + L DLF ++  
Sbjct: 6   GLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSM-- 63

Query: 282 HKKKVGSIAPKKFITRLRK------EKDEFDNYMQQDAHEFLNFLINHINEKCMKVKK 333
             K   SI P   +  L        EK E   Y+QQDA+E    ++  + +K   ++ 
Sbjct: 64  -DKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIED 120

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (173), Expect = 4e-14
 Identities = 43/175 (24%), Positives = 59/175 (33%), Gaps = 55/175 (31%)

Query: 328 CMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHL--------------- 372
             K+ +LP  L + + RF Y +K + + KV   V FPL L ++ L               
Sbjct: 214 SSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSK 273

Query: 373 ----------------------------------SDDAVNPDRMYNLVAVVIHCGSGPNR 398
                                              D   N    Y+L AV+ H G   + 
Sbjct: 274 FKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSS 333

Query: 399 GHYISIVK-SHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSR 452
           GHY+S VK   D W+ FDDD V  +    I    G            Y+L Y  R
Sbjct: 334 GHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSG-----GGDWHIAYVLLYGPR 383

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 7e-05
 Identities = 18/132 (13%), Positives = 42/132 (31%), Gaps = 9/132 (6%)

Query: 72  DEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTW 131
            E   Y+QQDA+E    ++  + + + +    S  ++  S+         +++  ++ + 
Sbjct: 90  GEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSAS-------AATPSKKKSL 142

Query: 132 VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKF 191
           + + F     +  KC   E           LQ+    N  +     G      L  +   
Sbjct: 143 IDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLK--LRLQEEITK 200

Query: 192 KCDNCASYQEAQ 203
           +           
Sbjct: 201 QSPTLQRNALYI 212

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.3 bits (212), Expect = 4e-19
 Identities = 37/165 (22%), Positives = 60/165 (36%), Gaps = 5/165 (3%)

Query: 212 KEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSC 271
           + + P          GL N GNTCY NS+LQ L       D       ++  N+  LL  
Sbjct: 2   RNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGH 61

Query: 272 LADLFHNIAT-----HKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326
             ++              +   I+PK F   + K  D+F  Y QQD+ E L FL++ ++E
Sbjct: 62  KGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHE 121

Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFH 371
              K          +              +   ++   + + LF 
Sbjct: 122 DLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQ 166

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (183), Expect = 2e-15
 Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 16/126 (12%)

Query: 328 CMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVA 387
            +++ KLP +L +HLKRF   D   +    +        L L        N  + YNL +
Sbjct: 236 KIEIWKLPPVLLVHLKRFS-YDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFS 294

Query: 388 VVIHCGSGPNRGHYISIVK--SHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
           V  H G   + GHY +  K  +   W  FDD  V  I  S+++            S   Y
Sbjct: 295 VSNHYGG-LDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK------------SSAAY 341

Query: 446 ILFYQS 451
           ILFY S
Sbjct: 342 ILFYTS 347

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (159), Expect = 2e-12
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 69  CSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPD---GGGGDNHSSSG 125
             +D+F  Y QQD+ E L FL++ ++E +     +   K + +                 
Sbjct: 95  KINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHK 154

Query: 126 FEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQ--NTSITQCLRGFSSTE 183
               + +  +FQG   S  +CL C   S   E F  L + +      ++  CLR FS  E
Sbjct: 155 QLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEE 214

Query: 184 TLCSDNKFKCDNCASYQEA 202
            L  +N+F C +C + +++
Sbjct: 215 KLTDNNRFYCSHCRARRDS 233

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.9 bits (211), Expect = 5e-19
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 6/152 (3%)

Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKET-----LLSCLADLFHNI 279
             GL N GNTC+ NS+LQ L   +  RD  L+       +  +     L+   A L   I
Sbjct: 3   LAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTI 62

Query: 280 ATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILA 339
            T       ++P +F T++++    F  Y QQDA EFL FL++ ++ +  +V   P    
Sbjct: 63  WTSSPN-DVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNP 121

Query: 340 LHLKRFKYMDKMNRHVKVSHRVVFPLELRLFH 371
            +L      +K  +  +            LF 
Sbjct: 122 ENLDHLPDDEKGRQMWRKYLEREDSRIGDLFV 153

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (159), Expect = 2e-12
 Identities = 33/125 (26%), Positives = 47/125 (37%), Gaps = 17/125 (13%)

Query: 328 CMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVA 387
              +++ P IL LHLKRF         +     V FPL                +YNL A
Sbjct: 225 KFSIQRFPKILVLHLKRFSESRIRTSKLT--TFVNFPLRDLDLREFASENTNHAVYNLYA 282

Query: 388 VVIHCGSGPNRGHYISIVKSHDF--WLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
           V  H G+    GHY +  +S     W  F+D  V  +  S +             +   Y
Sbjct: 283 VSNHSGT-TMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVR------------TSDAY 329

Query: 446 ILFYQ 450
           +LFY+
Sbjct: 330 LLFYE 334

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 4e-11
 Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 7/141 (4%)

Query: 69  CSSDEFDNYMQQDAHEFLNFLINHINEVI--LSERPQSNAKSKLSAPDGGGGDNHSSSGF 126
             +  F  Y QQDA EFL FL++ ++  +  ++ RP+SN ++    PD   G        
Sbjct: 82  RYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYL 141

Query: 127 EEPTW-VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIK----QNTSITQCLRGFSS 181
           E     + ++F G L S   C +C   S+  + F+DL + I        ++  C+R F+ 
Sbjct: 142 EREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTK 201

Query: 182 TETLCSDNKFKCDNCASYQEA 202
            + L  D K  C  C   +  
Sbjct: 202 EDVLDGDEKPTCCRCRGRKRC 222

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (202), Expect = 6e-18
 Identities = 35/139 (25%), Positives = 53/139 (38%), Gaps = 5/139 (3%)

Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKK 284
           Y GL N G TCY NS+LQ L+F    R  V     +   + +++   L  +F+ +    K
Sbjct: 6   YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDK 65

Query: 285 KVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKR 344
            VG    KK       E    D++MQ D  E    L++++  K         I  L   +
Sbjct: 66  PVG---TKKLTKSFGWET--LDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGK 120

Query: 345 FKYMDKMNRHVKVSHRVVF 363
                +       S R   
Sbjct: 121 MVSYIQCKEVDYRSDRRED 139

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (165), Expect = 4e-13
 Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 7/136 (5%)

Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLF-HLSDDAVNPDRMYNL 385
           K +K   LP +L L L RF Y  + ++++K++ R  FP +L L   L          Y L
Sbjct: 184 KGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYIL 243

Query: 386 VAVVIHCGSGPNRGHYISIV--KSHDFWLLFDDDVVDKIDQST-IEDFFGLTSDH--QKS 440
            AV++H G   + GHY+  +  K    W  FDDDVV +  +   IE  +G   D    + 
Sbjct: 244 HAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRH 302

Query: 441 SETGYILFYQSRDSTD 456
               Y+L Y       
Sbjct: 303 CTNAYMLVYIRESKLS 318

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 26/128 (20%)

Query: 69  CSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEE 128
              +  D++MQ D  E    L++++                           +   G   
Sbjct: 76  FGWETLDSFMQHDVQELCRVLLDNVE--------------------------NKMKGTCV 109

Query: 129 PTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSD 188
              + ++F+G + S  +C   +  S + ED++D+Q+ IK   +I +    + + E L  D
Sbjct: 110 EGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGD 169

Query: 189 NKFKCDNC 196
           NK+     
Sbjct: 170 NKYDAGEH 177

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.8 bits (195), Expect = 7e-17
 Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 18/120 (15%)

Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNK---------ETLLSCLADLFH 277
           G  N GNTCY N+ LQALY     RD +L Y      +          + ++  +   F 
Sbjct: 8   GFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFE 67

Query: 278 NIATHKKKVGSIAPKKFITRLRK-------EKDEFDNYMQQDAHEFLNFLINHINEKCMK 330
           N+     K  S+ P   +  LRK          +   Y QQDA E    L + ++     
Sbjct: 68  NLQNKSFK--SVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD 125

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.1 bits (193), Expect = 1e-16
 Identities = 50/390 (12%), Positives = 95/390 (24%), Gaps = 93/390 (23%)

Query: 69  CSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEE 128
               +   Y QQDA E    L + ++                                  
Sbjct: 95  ERDSQGGFYKQQDAEELFTQLFHSMSI-------------------------------VF 123

Query: 129 PTWVHEIFQGILTSETKCLNC--ETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLC 186
                E F+    +  K      +    ++E    LQ  I   T+  +        E + 
Sbjct: 124 GDKFSEDFRIQFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNEKIE 183

Query: 187 SDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYF 246
                + D   +                      P       V F     +N        
Sbjct: 184 K----RSDLTGANSIYSVEKKI---------SRLPKFLTVQYVRFFWKRSTNK------- 223

Query: 247 CKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFD 306
                                           I         +     +T     +    
Sbjct: 224 -----------------------------KSKILRKVVFPFQLDVADMLTPEYAAEKVKV 254

Query: 307 NYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLE 366
               +   +  N     I  +          +    ++++    +N   K     +   +
Sbjct: 255 RDELRKVEKEKNEKEREIKRR-KFDPSSSENVMTPREQYETQVALNESEKDQW--LEEYK 311

Query: 367 LRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVK---SHDFWLLFDDDVVDKID 423
                  +   NP  +YNL+ V+ H G+    GHY + ++     + W  F+DD V  ++
Sbjct: 312 KHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVE 371

Query: 424 QSTIEDFFGLTSDHQKSSETGYILFYQSRD 453
           +  IE   G        S++  IL Y+   
Sbjct: 372 KEKIESLAG-----GGESDSALILMYKGFG 396

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	470
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	100.0
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	100.0
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	100.0
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	100.0
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	100.0
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	99.63
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	99.62
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	99.61
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	99.61
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	99.52
d1qmya_	156	FMDV leader protease {Foot-and-mouth disease virus	94.28

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-53  Score=418.96  Aligned_cols=282  Identities=26%  Similarity=0.446  Sum_probs=234.0

Q ss_pred             Cccccccc-CCchhhhh--hhhccchHHHHHh-------------------------hhcCCccchhhHHHHHHhhcccC
Q psy2130          20 ERYFGLVN-GKTCKEKE--DRIEKSQPFWEQT-------------------------SLQDKISLGWECSLILELDLCSS   71 (470)
Q Consensus        20 ~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~-------------------------~~~~~~~~~~~~~~~~~l~~~~~   71 (470)
                      +|++||.| ||||||||  |+|+++|+|...+                         ....  ....+..+++.+.   .
T Consensus         4 ~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~~~~~~~~~~~l~~lf~~l~~~~--~~~~~~~~~~~~~---~   78 (347)
T d1nbfa_           4 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD--KPVGTKKLTKSFG---W   78 (347)
T ss_dssp             SSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTTCCTTTCHHHHHHHHHHHHHHCS--SCBCCHHHHHHTT---C
T ss_pred             CCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccCCcccchHHHHHHHHHHHHhcCC--CCcChHHHHHhhc---h
Confidence            57999999 99999999  9999999993222                         2111  1223335555555   3


Q ss_pred             CCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCC
Q psy2130          72 DEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCET  151 (470)
Q Consensus        72 ~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~  151 (470)
                      +.|..+.|||||||+..||+.|++++...                          ...++|.++|.|++.++++|..|++
T Consensus        79 ~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~--------------------------~~~~~i~~lF~g~~~~~~~C~~C~~  132 (347)
T d1nbfa_          79 ETLDSFMQHDVQELCRVLLDNVENKMKGT--------------------------CVEGTIPKLFRGKMVSYIQCKEVDY  132 (347)
T ss_dssp             CGGGGGSCBCHHHHHHHHHHHHHHHHTTS--------------------------TTTTHHHHHHCEEEEEEEEESSSCC
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHhhc--------------------------cccccccceeceEEEEeEEeCCccc
Confidence            56889999999999999999999988521                          2356799999999999999999999


Q ss_pred             cccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccC
Q psy2130         152 VSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNF  231 (470)
Q Consensus       152 ~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~  231 (470)
                      .+.+.++|.+|+|++|...+++++|..++.+|.+++++.+.|..|+. ..+.                            
T Consensus       133 ~s~~~e~f~~l~L~i~~~~~~~~~l~~~~~~e~l~~~~~~~~~~~~~-~~~~----------------------------  183 (347)
T d1nbfa_         133 RSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGL-QEAE----------------------------  183 (347)
T ss_dssp             EEEEEEEESSEEEECTTCCBHHHHHHHHTCCEEECGGGCEECSTTCE-ECEE----------------------------
T ss_pred             eeeeeccccccccccccccchhhhHHhhcchheeccccccccccCcc-eecc----------------------------
Confidence            99999999999999999999999999999999998887777777654 4454                            


Q ss_pred             CCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccc
Q psy2130         232 GNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQ  311 (470)
Q Consensus       232 gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~Qq  311 (470)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (347)
T d1nbfa_         184 --------------------------------------------------------------------------------  183 (347)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCCC-CCCcceEEEEEEE
Q psy2130         312 DAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAV-NPDRMYNLVAVVI  390 (470)
Q Consensus       312 Da~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~-~~~~~Y~L~avV~  390 (470)
                                     ++..|.++|++|+|+|+||.++...+...|+...|.||..|||.++..... .....|+|+|||+
T Consensus       184 ---------------k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~~vI~  248 (347)
T d1nbfa_         184 ---------------KGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLV  248 (347)
T ss_dssp             ---------------EEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEE
T ss_pred             ---------------EEEEEEecCChheEeeeeeeeccccCcccccCceEeeeeeeccccccccccccCccceeeEEEEE
Confidence                           678899999999999999999887777789999999999999998875543 3457899999999


Q ss_pred             eecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhh-hhcCCCCC--CCCCCCcEEEEEEEecCCCcc
Q psy2130         391 HCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIE-DFFGLTSD--HQKSSETGYILFYQSRDSTDA  457 (470)
Q Consensus       391 H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~-~~~g~~~~--~~~~~~~aYiLfY~r~~~~~~  457 (470)
                      |.|. .++|||+||+|.  +++|++|||+.|++|++++|. ..+|+.+.  ......+||||||+|++..+.
T Consensus       249 H~G~-~~~GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~~~~~~  319 (347)
T d1nbfa_         249 HSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLSE  319 (347)
T ss_dssp             EEEE-TTEEEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEGGGHHH
T ss_pred             ecCC-CCCCEEEEeeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccccCCCCCEEEEEEEecCchHH
Confidence            9998 699999999995  469999999999999999985 46666432  222456899999999985443

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-49  Score=395.42  Aligned_cols=289  Identities=24%  Similarity=0.309  Sum_probs=218.7

Q ss_pred             ccccccc-CCchhhhh--hhhccchHHHHHh------------------------------hhcCCccchhhHHHHHHhh
Q psy2130          21 RYFGLVN-GKTCKEKE--DRIEKSQPFWEQT------------------------------SLQDKISLGWECSLILELD   67 (470)
Q Consensus        21 ~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~------------------------------~~~~~~~~~~~~~~~~~l~   67 (470)
                      -||||.| ||||||||  |+|+++|+|...+                              ....  ....+..+++.|.
T Consensus         3 ~P~GL~N~GNtCY~NSvLQ~L~~ip~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--~~~~p~~~~~~l~   80 (383)
T d2ayna1           3 LPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS--SSIPPIILLQFLH   80 (383)
T ss_dssp             CCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHC--SEECCHHHHHHHH
T ss_pred             CCcCcCCCCchhHHHHHHHHHHccHHHHHHHHhhhhhccCCCccccHHHHHHHHHHHHHHHhcCC--CccCHHHHHHHHH
Confidence            3699999 99999999  9999999992111                              1111  1122234555554


Q ss_pred             cccC------CCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccc
Q psy2130          68 LCSS------DEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILT  141 (470)
Q Consensus        68 ~~~~------~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~  141 (470)
                       ...      ..+.++.|||||||+..||+.|++++..........       ......+........++|.++|+|++.
T Consensus        81 -~~~~~~~~~~~~~~~~QqDa~Ef~~~ll~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~i~~lF~g~~~  152 (383)
T d2ayna1          81 -MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKE-------TDSSSASAATPSKKKSLIDQFFGVEFE  152 (383)
T ss_dssp             -HHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC-------------------------CCHHHHHTCEEEE
T ss_pred             -HHhHhhccccccCchhhhhHHHHHHHHHHHHHHHHHhhhcccccc-------ccchhhhhcccccCCCeeeeeeeEEEE
Confidence             222      345667799999999999999999886443322111       111112233344567899999999999


Q ss_pred             cceeccccCCcccccCCCcccccccCC---CCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCC
Q psy2130         142 SETKCLNCETVSSKDEDFFDLQVDIKQ---NTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDR  218 (470)
Q Consensus       142 ~~~~C~~C~~~s~~~~~f~~Lsl~i~~---~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~  218 (470)
                      +++.|..|+..+.+.+.|..++|++|-   ..++.++|+.++.++..     +.|+.|+....+.               
T Consensus       153 ~~~~c~~c~~~~~~~~~~~~l~L~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~~~~~~---------------  212 (383)
T d2ayna1         153 TTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEIT-----KQSPTLQRNALYI---------------  212 (383)
T ss_dssp             EEEEESSSCCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTEECCC-----CEETTTTEECCEE---------------
T ss_pred             EEEEecCCCceeeecccccccccccccccccchhhhhhhhhhccccc-----ccccccCcceeee---------------
Confidence            999999999998888888888777763   46799999998887764     6899999888777               


Q ss_pred             CCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHH
Q psy2130         219 FPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRL  298 (470)
Q Consensus       219 ~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l  298 (470)
                                                                                                      
T Consensus       213 --------------------------------------------------------------------------------  212 (383)
T d2ayna1         213 --------------------------------------------------------------------------------  212 (383)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCC---
Q psy2130         299 RKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDD---  375 (470)
Q Consensus       299 ~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~---  375 (470)
                                                  +...|.++|++|+|+++||.++.......|+...|.||..||+.++...   
T Consensus       213 ----------------------------~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~  264 (383)
T d2ayna1         213 ----------------------------KSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQ  264 (383)
T ss_dssp             ----------------------------EEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHH
T ss_pred             ----------------------------eeeeeecccceeeeeccceeecccCcceeecCcEEccCCeeechhhcchhhh
Confidence                                        7888999999999999999998776677899999999999998766421   


Q ss_pred             ----------------------------------------------CCCCCcceEEEEEEEeecCCCCCcEEEEEEec-C
Q psy2130         376 ----------------------------------------------AVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS-H  408 (470)
Q Consensus       376 ----------------------------------------------~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~-~  408 (470)
                                                                    .......|+|+|||+|.|.++.+|||+||+|. +
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~s~~~GHY~a~vk~~~  344 (383)
T d2ayna1         265 EKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQ  344 (383)
T ss_dssp             HHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEET
T ss_pred             ccccchhhhhhhhhhhhhccccCccccccccccccccccccccccccCCCCceEEEEEEEEEECCCCCCCCcEEEEECCC
Confidence                                                          12344579999999999977999999999994 6


Q ss_pred             CcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEec
Q psy2130         409 DFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSR  452 (470)
Q Consensus       409 ~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~  452 (470)
                      +.|++|||+.|++|++++|....++.     .+..||||||.|+
T Consensus       345 ~~W~~~nD~~V~~v~~~~v~~~~~~~-----~~~~aYiLfY~r~  383 (383)
T d2ayna1         345 DEWIKFDDDKVSIVTPEDILRLSGGG-----DWHIAYVLLYGPR  383 (383)
T ss_dssp             TEEEEEBTTBCCCBCHHHHGGGGSSS-----SSCEEEEEEEECC
T ss_pred             CeEEEEECCceEEeCHHHHHHhhCCC-----CCCceEEEEEEEC
Confidence            89999999999999999997765542     3678999999986

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-46  Score=366.45  Aligned_cols=295  Identities=28%  Similarity=0.461  Sum_probs=228.7

Q ss_pred             CCCCccccccc-CCchhhhh--hhhccchHHHHHh--------------------------------hhcCCccchhhHH
Q psy2130          17 PPNERYFGLVN-GKTCKEKE--DRIEKSQPFWEQT--------------------------------SLQDKISLGWECS   61 (470)
Q Consensus        17 ~~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~--------------------------------~~~~~~~~~~~~~   61 (470)
                      .+++|++||.| ||||||||  |+|+++|+|...+                                ..... ....+..
T Consensus        10 ~~~~g~vGL~N~GNtCYlNSvLQ~L~~ip~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~i~~~~   88 (348)
T d2gfoa1          10 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQY-RYISPKD   88 (348)
T ss_dssp             CSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCE-EEECCHH
T ss_pred             CCCCCeECCccCCchhHHHHHHHHHHcCHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHhCCC-Ccccccc
Confidence            45788999999 99999999  9999999982211                                11121 3333446


Q ss_pred             HHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCC---CCCCCCCCCCCCchHHHHhhcc
Q psy2130          62 LILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGG---GGDNHSSSGFEEPTWVHEIFQG  138 (470)
Q Consensus        62 ~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~i~~~F~g  138 (470)
                      |+..++ +..+.+.++.||||+||+..||+.|++|+...................   ....+........+++.++|.|
T Consensus        89 ~~~~~~-~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~f~~  167 (348)
T d2gfoa1          89 FKITIG-KINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQG  167 (348)
T ss_dssp             HHHHHH-HHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCE
T ss_pred             cccccc-ccCccccCcccCCHHHHHHHHHHHHHHHhhhcccccccccccccccchhhhhhhhhhhccccCCchhHhhhhh
Confidence            777777 777889999999999999999999999986443322111110000000   0000000011234678999999


Q ss_pred             ccccceeccccCCcccccCCCcccccccCC--CCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCC
Q psy2130         139 ILTSETKCLNCETVSSKDEDFFDLQVDIKQ--NTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGP  216 (470)
Q Consensus       139 ~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~--~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~  216 (470)
                      .+.+..+|..|+..+...++|..++++++.  ..++.+||+.|+..+.+++.+.+.|+.|+.+....             
T Consensus       168 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~~c~~c~~~~~~~-------------  234 (348)
T d2gfoa1         168 QFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSL-------------  234 (348)
T ss_dssp             EEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEE-------------
T ss_pred             hhheeccccCCCceeeccccceeechhhcccccCcHHHHHHHhhhhcccccccceeccccCcceeee-------------
Confidence            999999999999999999999999988875  46799999999999999988899999999987777             


Q ss_pred             CCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHH
Q psy2130         217 DRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFIT  296 (470)
Q Consensus       217 ~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~  296 (470)
                                                                                                      
T Consensus       235 --------------------------------------------------------------------------------  234 (348)
T d2gfoa1         235 --------------------------------------------------------------------------------  234 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCc-ccccccCCCC
Q psy2130         297 RLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPL-ELRLFHLSDD  375 (470)
Q Consensus       297 ~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~-~ldl~~~~~~  375 (470)
                                                    .+..+..+|.++.+++.|+..+....  .+......||. .+|...+...
T Consensus       235 ------------------------------~~~~~~~~p~~l~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  282 (348)
T d2gfoa1         235 ------------------------------KKIEIWKLPPVLLVHLKRFSYDGRWK--QKLQTSVDFPLENLDLSQYVIG  282 (348)
T ss_dssp             ------------------------------EEEEEEECCSEEEEEECCEEECSSSE--EECCCEEECCSSCBCCGGGBCS
T ss_pred             ------------------------------EEEEEEeCCccceeceeeeeccCccc--eeeccccccccccccccceecC
Confidence                                          77888899999999999999876432  46666777775 4777777766


Q ss_pred             CCCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEe
Q psy2130         376 AVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQS  451 (470)
Q Consensus       376 ~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r  451 (470)
                      .......|+|+|||+|.|. +++|||+||+|+  +++|++|||+.|+++++++|            ...+||||||+|
T Consensus       283 ~~~~~~~Y~L~avi~H~G~-~~~GHY~~~ik~~~~~~W~~~nD~~V~~v~~~~v------------~~~~aYlLfY~r  347 (348)
T d2gfoa1         283 PKNNLKKYNLFSVSNHYGG-LDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV------------KSSAAYILFYTS  347 (348)
T ss_dssp             CCSSCCCBEEEEEEEEESC-TTTCEEEEEEEETTTTEEEEEETTEEEECCHHHH------------SCTTEEEEEEEC
T ss_pred             CCCCCCCEEEEEEEEEeCC-CCCceEEEEEEeCCcCeEEEEECCcCeECCHHHc------------cCCCcEEEEEEe
Confidence            6677789999999999996 999999999994  58999999999999999999            467999999998

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-45  Score=360.17  Aligned_cols=290  Identities=26%  Similarity=0.437  Sum_probs=219.9

Q ss_pred             ccccccc-CCchhhhh--hhhccchHHHHHh------------------------------hhcCCccchhhHHHHHHhh
Q psy2130          21 RYFGLVN-GKTCKEKE--DRIEKSQPFWEQT------------------------------SLQDKISLGWECSLILELD   67 (470)
Q Consensus        21 ~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~------------------------------~~~~~~~~~~~~~~~~~l~   67 (470)
                      |+|||.| ||||||||  |+|+++|+|...+                              ..........+..++..+.
T Consensus         2 g~~GL~N~GNtCYlNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~i~p~~~~~~~~   81 (336)
T d2hd5a1           2 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQ   81 (336)
T ss_dssp             CCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTHHHHC---CCSSCCHHHHHHHHHHHHHHTSCTTCEECCHHHHHHHH
T ss_pred             CccCCcCCCcchHHHHHHHHHHcCHHHHHHHHhcchhhhcccCCChhHHHHHHHHHHHHHHHhCCCCCCCCchhhhcccc
Confidence            7999999 99999999  9999999992211                              1111112223336666676


Q ss_pred             cccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCC-----CCCCCCCCCCchHHHHhhcccccc
Q psy2130          68 LCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGG-----DNHSSSGFEEPTWVHEIFQGILTS  142 (470)
Q Consensus        68 ~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~i~~~F~g~~~~  142 (470)
                       ...+.|..+.||||+||+.+||+.|++++..............  +....     ..+........+.+...|.+++..
T Consensus        82 -~~~~~~~~~~q~Da~Ef~~~lld~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~  158 (336)
T d2hd5a1          82 -RYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENL--DHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKS  158 (336)
T ss_dssp             -HHCGGGSSCCCBCHHHHHHHHHHHHHHHTCCC--------------CCCHHHHHHHHHHHHHTTCCCHHHHHHCEEEEE
T ss_pred             -cccccccCcccccHHHHHHHHHHHHHHHHhhhhcccccCcccc--ccccchhhHHHHHHhhhccccchhhhhhhhheee
Confidence             6778899999999999999999999999864322211110000  00000     000001123446688999999999


Q ss_pred             ceeccccCCcccccCCCcccccccCC----CCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCC
Q psy2130         143 ETKCLNCETVSSKDEDFFDLQVDIKQ----NTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDR  218 (470)
Q Consensus       143 ~~~C~~C~~~s~~~~~f~~Lsl~i~~----~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~  218 (470)
                      ...|..|+..+.+.+.+..+.++++.    ..+|+++|+.|+.+|.+++++.+.|..|.....+.               
T Consensus       159 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~l~~~~~~~~~~~~~~~~~~---------------  223 (336)
T d2hd5a1         159 SLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCI---------------  223 (336)
T ss_dssp             EEEETTTCCEEEEEEEESSEEEECC------CBHHHHHHHHTSCEEECGGGCCEETTTTEECCEE---------------
T ss_pred             eeeccccCceeeecccccccccccccccCCCCCHHHHHHhcCCceEecCcccccccccccceeeE---------------
Confidence            99999999999999999999999875    46899999999999999888889999988877776               


Q ss_pred             CCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHH
Q psy2130         219 FPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRL  298 (470)
Q Consensus       219 ~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l  298 (470)
                                                                                                      
T Consensus       224 --------------------------------------------------------------------------------  223 (336)
T d2hd5a1         224 --------------------------------------------------------------------------------  223 (336)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecC-cccccccCCCCCC
Q psy2130         299 RKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFP-LELRLFHLSDDAV  377 (470)
Q Consensus       299 ~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp-~~ldl~~~~~~~~  377 (470)
                                                  +...+.++|++|.++++|+..+....  .+....|.++ ..+|+.++.... 
T Consensus       224 ----------------------------k~~~~~~~P~~l~i~~~r~~~~~~~~--~~~~~~v~~~~~~~dl~~~~~~~-  272 (336)
T d2hd5a1         224 ----------------------------KKFSIQRFPKILVLHLKRFSESRIRT--SKLTTFVNFPLRDLDLREFASEN-  272 (336)
T ss_dssp             ----------------------------EEEEEEECCSEEEEEEECEECCSSCC--EECCCCCBCCSSCEECGGGBSSS-
T ss_pred             ----------------------------EEEEEeecccchhhhhhhhhhccccc--cccceeEeeccccccccccccCC-
Confidence                                        77888999999999999999765332  4455556555 678988876543 


Q ss_pred             CCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEec
Q psy2130         378 NPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSR  452 (470)
Q Consensus       378 ~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~  452 (470)
                      .....|+|+|||+|+|. .++|||+||+|+  +++|++|||+.|++|++++|            ...+||||||+|.
T Consensus       273 ~~~~~Y~L~~vi~H~G~-~~~GHY~~~ik~~~~~~W~~~nD~~V~~v~~~~v------------~~~~aYiL~Y~r~  336 (336)
T d2hd5a1         273 TNHAVYNLYAVSNHSGT-TMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQV------------RTSDAYLLFYELA  336 (336)
T ss_dssp             SCCCEEEEEEEEEEEEC-SSCEEEEEEEECTTTCCEEEEETTEEEEECGGGS------------CCTTEEEEEEEEC
T ss_pred             CCCCeEeEEEEEEEeCC-CCCceEEEEEEcCCCCeEEEEECCceeECCHHHh------------ccCCCEEEEEEcC
Confidence            35678999999999997 899999999994  57999999999999999988            3679999999983

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-42  Score=346.82  Aligned_cols=269  Identities=23%  Similarity=0.326  Sum_probs=186.1

Q ss_pred             Cccccccc-CCchhhhh--hhhccchHHHHHh----------------------------------hhcCCccchhhHHH
Q psy2130          20 ERYFGLVN-GKTCKEKE--DRIEKSQPFWEQT----------------------------------SLQDKISLGWECSL   62 (470)
Q Consensus        20 ~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~----------------------------------~~~~~~~~~~~~~~   62 (470)
                      .-|+||.| ||||||||  |||+++|+|...+                                  ..... ....+..+
T Consensus         4 ~~p~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~i~p~~~   82 (397)
T d1vjva_           4 QLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSF-KSVLPVVL   82 (397)
T ss_dssp             CCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-C-CEECCHHH
T ss_pred             CCCCCCCCCCccHHHHHHHHHHHcCHHHHHHHHhCCcccccccccccccchHHHHHHHHHHHHHHHHhCCC-CccCHHHH
Confidence            34799999 99999999  9999999992222                                  11111 22233355


Q ss_pred             HHHhhcccCC-------CCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHh
Q psy2130          63 ILELDLCSSD-------EFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEI  135 (470)
Q Consensus        63 ~~~l~~~~~~-------~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~  135 (470)
                      ++.|+ ...+       .+.++.||||||||..||+.|++++..                               .+...
T Consensus        83 ~~~l~-~~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~l~~-------------------------------~~~~~  130 (397)
T d1vjva_          83 LNTLR-KCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD-------------------------------KFSED  130 (397)
T ss_dssp             HHHHH-HHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH-------------------------------HHHTT
T ss_pred             HHHHH-HHhhhhccccccccccccccHHHHHHHHHHHHHHHhcc-------------------------------chhhh
Confidence            66655 3333       456789999999999999999998842                               25566


Q ss_pred             hccccccceeccccCCc--ccccCCCcccccccCCCC-CHHHHhccCCccccccCCCccccCCccccccccCCCcccccc
Q psy2130         136 FQGILTSETKCLNCETV--SSKDEDFFDLQVDIKQNT-SITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEK  212 (470)
Q Consensus       136 F~g~~~~~~~C~~C~~~--s~~~~~f~~Lsl~i~~~~-sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~  212 (470)
                      |.+.+...+.|..|...  ....+.+..|++.+.... .+...+...+. +.    ....|..|+......         
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~---------  196 (397)
T d1vjva_         131 FRIQFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLN-EK----IEKRSDLTGANSIYS---------  196 (397)
T ss_dssp             TCEEEEEEEEETTEEEEEEEECCCEESCEEECCCTTCCBHHHHHHHHHE-EC-------------CCCCEE---------
T ss_pred             hcceeeeeEEecccccccceecceeeeeeeeeeccceeechHHHHhhhh-hh----hcccccccCCCceee---------
Confidence            77777777766665433  334455566666665432 22222221111 11    234566666554444         


Q ss_pred             ccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChH
Q psy2130         213 EIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPK  292 (470)
Q Consensus       213 ~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~  292 (470)
                                                                                                      
T Consensus       197 --------------------------------------------------------------------------------  196 (397)
T d1vjva_         197 --------------------------------------------------------------------------------  196 (397)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccC
Q psy2130         293 KFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHL  372 (470)
Q Consensus       293 ~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~  372 (470)
                                                        +...+.++|++|.++++||.++.......|+...+.||..+|+.++
T Consensus       197 ----------------------------------~~~~i~~~p~~l~i~l~R~~~~~~~~~~~k~~~~~~~~~~ld~~~~  242 (397)
T d1vjva_         197 ----------------------------------VEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADM  242 (397)
T ss_dssp             ----------------------------------EEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGG
T ss_pred             ----------------------------------eeceeecCCceeEEEeeeeeeccccccccccCceeecCcEEecccc
Confidence                                              5567889999999999999998877777899999999999987655


Q ss_pred             CCC---------------------------------------------------------------------------CC
Q psy2130         373 SDD---------------------------------------------------------------------------AV  377 (470)
Q Consensus       373 ~~~---------------------------------------------------------------------------~~  377 (470)
                      ...                                                                           ..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (397)
T d1vjva_         243 LTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGE  322 (397)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTB
T ss_pred             cchhhhhhhhhhhHhhhhhhhccchHHHHHhhhccCCccccccccchhhccchhcccchhccchhhhccccccccccccC
Confidence            311                                                                           02


Q ss_pred             CCCcceEEEEEEEeecCCCCCcEEEEEEec---CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEecCC
Q psy2130         378 NPDRMYNLVAVVIHCGSGPNRGHYISIVKS---HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRDS  454 (470)
Q Consensus       378 ~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~---~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~~~  454 (470)
                      .....|+|+|||+|+|.+..+|||+||+|+   +++|++|||+.|++|++++|.+..|+.     .+..||||||+|.|.
T Consensus       323 ~~~~~Y~L~aVv~H~G~~~~~GHY~ay~r~~~~~~~W~~~nD~~V~~v~~~~V~~~~~~~-----~~~~aYlLfY~r~~~  397 (397)
T d1vjva_         323 NPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGG-----ESDSALILMYKGFGL  397 (397)
T ss_dssp             CSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCT-----TSCEEEEEEEEETTC
T ss_pred             CCCCCEEEEEEEEEecCCCCCcCeEEEEECCCCCCEEEEEECCCCEECCHHHHHHhhCCC-----CCCeEEEEEEEecCC
Confidence            234679999999999987899999999995   478999999999999999998766542     246899999999874

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3e-16  Score=152.63  Aligned_cols=101  Identities=27%  Similarity=0.538  Sum_probs=87.9

Q ss_pred             CCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhh
Q psy2130         221 PNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRK  300 (470)
Q Consensus       221 ~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~  300 (470)
                      ...|++||.|+||||||||+||+|+++|+|++.++..+.........+..+++.+|..|.....   .+.|..++..+. 
T Consensus         2 ~~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~~~~~~~~~~~l~~lf~~l~~~~~---~~~~~~~~~~~~-   77 (347)
T d1nbfa_           2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDK---PVGTKKLTKSFG-   77 (347)
T ss_dssp             CSSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTTCCTTTCHHHHHHHHHHHHHHCSS---CBCCHHHHHHTT-
T ss_pred             CCCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccCCcccchHHHHHHHHHHHHhcCCC---CcChHHHHHhhc-
Confidence            4578999999999999999999999999999999988877777788899999999999988653   467777776664 


Q ss_pred             ccCcCCccccccHHHHHHHHHHHHHh
Q psy2130         301 EKDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       301 ~~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                       ...+..+.||||+||+..|++.|++
T Consensus        78 -~~~~~~~~qqDa~Ef~~~ll~~l~~  102 (347)
T d1nbfa_          78 -WETLDSFMQHDVQELCRVLLDNVEN  102 (347)
T ss_dssp             -CCGGGGGSCBCHHHHHHHHHHHHHH
T ss_pred             -hhhcchHHHHHHHHHHHHHHHHHHH
Confidence             3457788999999999999999986

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.7e-16  Score=150.63  Aligned_cols=105  Identities=30%  Similarity=0.440  Sum_probs=91.4

Q ss_pred             CCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccc-------ccChHHHHHHHHHHHHHHHhCCCCCCccChH
Q psy2130         220 PPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN-------KKNKETLLSCLADLFHNIATHKKKVGSIAPK  292 (470)
Q Consensus       220 ~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~-------~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~  292 (470)
                      .+.+|++||.|+||||||||+||+|+++|+|++++.......       ......+...++.++..++....  ..++|.
T Consensus        10 ~~~~g~vGL~N~GNtCYlNSvLQ~L~~ip~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~--~~i~~~   87 (348)
T d2gfoa1          10 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQY--RYISPK   87 (348)
T ss_dssp             CSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCE--EEECCH
T ss_pred             CCCCCeECCccCCchhHHHHHHHHHHcCHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHhCCC--Cccccc
Confidence            346899999999999999999999999999999987633221       23356799999999999988654  478999


Q ss_pred             HHHHHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130         293 KFITRLRKEKDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       293 ~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      .+...+.+..+.+..+.||||+||+..+++.|++
T Consensus        88 ~~~~~~~~~~~~~~~~~qqDa~E~l~~ll~~l~~  121 (348)
T d2gfoa1          88 DFKITIGKINDQFAGYSQQDSQELLLFLMDGLHE  121 (348)
T ss_dssp             HHHHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHH
T ss_pred             cccccccccCccccCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999986

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=6e-16  Score=152.28  Aligned_cols=102  Identities=31%  Similarity=0.500  Sum_probs=84.0

Q ss_pred             CCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccccc---------ChHHHHHHHHHHHHHHHhCCCCCCccChHH
Q psy2130         223 ERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKK---------NKETLLSCLADLFHNIATHKKKVGSIAPKK  293 (470)
Q Consensus       223 ~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~---------~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~  293 (470)
                      .-++||.|+||||||||+||+|+++|+|++.++.+......         ....++.+|++++..|+....  ..+.|..
T Consensus         4 ~~p~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~--~~i~p~~   81 (397)
T d1vjva_           4 QLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSF--KSVLPVV   81 (397)
T ss_dssp             CCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-C--CEECCHH
T ss_pred             CCCCCCCCCCccHHHHHHHHHHHcCHHHHHHHHhCCcccccccccccccchHHHHHHHHHHHHHHHHhCCC--CccCHHH
Confidence            34689999999999999999999999999999876544311         134678899999999987654  4789999


Q ss_pred             HHHHHhhccCcC-------CccccccHHHHHHHHHHHHHh
Q psy2130         294 FITRLRKEKDEF-------DNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       294 ~~~~l~~~~~~~-------~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      ++..++...+.+       ..+.||||+||+..|++.|++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~  121 (397)
T d1vjva_          82 LLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSI  121 (397)
T ss_dssp             HHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhccccccccccccccHHHHHHHHHHHHHH
Confidence            999998866554       467899999999999999987

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.9e-16  Score=148.35  Aligned_cols=102  Identities=33%  Similarity=0.542  Sum_probs=89.9

Q ss_pred             CccCcccCCCcchhHHHHHHHhhchHHHHHHhcccc-----ccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHH
Q psy2130         224 RYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKA-----KNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRL  298 (470)
Q Consensus       224 ~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~-----~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l  298 (470)
                      |++||.|+||||||||+||+|+++|+||+.+++...     ........+...++.++..++... ....+.|..++..+
T Consensus         2 g~~GL~N~GNtCYlNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~-~~~~i~p~~~~~~~   80 (336)
T d2hd5a1           2 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSS-PNDVVSPSEFKTQI   80 (336)
T ss_dssp             CCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTHHHHC---CCSSCCHHHHHHHHHHHHHHTSC-TTCEECCHHHHHHH
T ss_pred             CccCCcCCCcchHHHHHHHHHHcCHHHHHHHHhcchhhhcccCCChhHHHHHHHHHHHHHHHhCC-CCCCCCchhhhccc
Confidence            799999999999999999999999999999986432     223446678899999999998765 45789999999999


Q ss_pred             hhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130         299 RKEKDEFDNYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       299 ~~~~~~~~~~~QqDa~E~~~~ll~~L~~  326 (470)
                      ......+..+.|+||+||+..+++.|++
T Consensus        81 ~~~~~~~~~~~q~Da~Ef~~~lld~l~~  108 (336)
T d2hd5a1          81 QRYAPRFVGYNQQDAQEFLRFLLDGLHN  108 (336)
T ss_dssp             HHHCGGGSSCCCBCHHHHHHHHHHHHHH
T ss_pred             ccccccccCcccccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.7e-15  Score=143.94  Aligned_cols=99  Identities=27%  Similarity=0.465  Sum_probs=82.6

Q ss_pred             ccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccc-----ccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHh
Q psy2130         225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN-----KKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLR  299 (470)
Q Consensus       225 ~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~-----~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~  299 (470)
                      |+||.|+||||||||+||+|+++|+|++++..+....     ......+..+|+.++..|+...   ..+.|..++..+.
T Consensus         4 P~GL~N~GNtCY~NSvLQ~L~~ip~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~---~~~~p~~~~~~l~   80 (383)
T d2ayna1           4 PCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS---SSIPPIILLQFLH   80 (383)
T ss_dssp             CCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHC---SEECCHHHHHHHH
T ss_pred             CcCcCCCCchhHHHHHHHHHHccHHHHHHHHhhhhhccCCCccccHHHHHHHHHHHHHHHhcCC---CccCHHHHHHHHH
Confidence            4899999999999999999999999999998865432     2335668889999999998743   4678999999998


Q ss_pred             hccCcCC------ccccccHHHHHHHHHHHHHh
Q psy2130         300 KEKDEFD------NYMQQDAHEFLNFLINHINE  326 (470)
Q Consensus       300 ~~~~~~~------~~~QqDa~E~~~~ll~~L~~  326 (470)
                      ...+.+.      ...||||+||+..+++.|++
T Consensus        81 ~~~~~~~~~~~~~~~~QqDa~Ef~~~ll~~l~~  113 (383)
T d2ayna1          81 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQ  113 (383)
T ss_dssp             HHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHT
T ss_pred             HHhHhhccccccCchhhhhHHHHHHHHHHHHHH
Confidence            7665543      45599999999999999997

>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: FMDV leader protease
domain: FMDV leader protease
species: Foot-and-mouth disease virus [TaxId: 12110]

Probab=94.28  E-value=0.0079  Score=46.24  Aligned_cols=38  Identities=16%  Similarity=0.221  Sum_probs=31.4

Q ss_pred             EEEEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceeeechh
Q psy2130         384 NLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQS  425 (470)
Q Consensus       384 ~L~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~  425 (470)
                      +.+|-|.-+|.    +|-+-++-.+..||.+||+.+.+-.++
T Consensus       108 DfhAgiflkg~----eHAVFa~~TS~GWyaiDDe~fypwtPd  145 (156)
T d1qmya_         108 DFHAGIFLKGQ----EHAVFACVTSNGWYAIDDEDFYPWTPD  145 (156)
T ss_dssp             GEEEEEEEETT----TEEEEEECCTTSSEEEETTEEEECCCC
T ss_pred             hheeeeEecCC----CceEEEEEccCceEEecccccccCCCC
Confidence            45777877776    599999998999999999999986543