Psyllid ID: psy2194

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90--
Protein Sequence
MYLNQVGIDCTSYLLVENKPCRYLPGSPDEQEIYRRLIYPSLIALGKNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKTITLF
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEccccccccccccHHHHHHHHHHccEEEEcccccccccccccEEEEEEEccccccccccccccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEccccccccccccHHHHHHHHHcHHHHHHccccccEEccccEEEEEEEEcccccccccccccccEEEEEccEEEEc
Coil and Loop (DISEMBL)
MYLNQVGIDCTSyllvenkpcrylpgspdeqEIYRRLIYPSLIALGKNKKRFIDKKNAITFHLvhrsqkdpllvdetaPQHVQMALKTITLF
Flexible Loop (DISEMBL)
MYLNQVGIDCTSYLLVENKPCRYLPGSPDEQEIYRRLIYPSLIALGKNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKTITLF
Low Complexity Region (SEG)
MYLNQVGIDCTSYLLVENKPCRYLPGSPDEQEIYRRLIYPSLIALGKNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKTITLF
Disordered region (IsUnstruct)
**LNQVGIDCTSYLLVENKPCRYLPGSPDEQEIYRRLIYPSLIALGKNKKRFIDKKNAITFHLVHRSQKDPLLV******************
Disordered Region (DISOPRED)
***NQVGIDCTSYLLVENKPCRYLPGSPDEQEIYRRLIYPSLIALGKNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKTI***
Disordered Region (DISEMBL)
MYLNQVGIDCTSYLLVENKPCRYLPGSPDEQEIYRRLIYPSLIALGKNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKTITLF
Disordered Region (DISPRO)
*YLNQVGIDCTSYLLVENKPCRYLPGSPDEQEIYRRLIYPSLIALGKNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKTITLF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYLNQVGIDCTSYLLVENKPCRYLPGSPDEQEIYRRLIYPSLIALGKNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKTITLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	92	2.2.26 [Sep-21-2011]
Q5U3J8	469	Protein LTV1 homolog OS=D	yes	N/A	0.391	0.076	0.777	9e-11
Q4V838	469	Protein LTV1 homolog OS=X	N/A	N/A	0.391	0.076	0.694	3e-08
Q7KN79	493	Protein LTV1 homolog OS=D	yes	N/A	0.391	0.073	0.694	3e-08
Q10191	386	Protein LTV1 OS=Schizosac	yes	N/A	0.445	0.106	0.512	2e-05
Q6NSQ7	470	Protein LTV1 homolog OS=M	yes	N/A	0.271	0.053	0.76	2e-05
Q0VC06	475	Protein LTV1 homolog OS=B	yes	N/A	0.347	0.067	0.625	3e-05
Q5R8B2	475	Protein LTV1 homolog OS=P	yes	N/A	0.347	0.067	0.593	3e-05
Q96GA3	475	Protein LTV1 homolog OS=H	yes	N/A	0.347	0.067	0.593	3e-05
Q68FR7	470	Protein LTV1 homolog OS=R	yes	N/A	0.271	0.053	0.76	5e-05

>sp|Q5U3J8|LTV1_DANRE Protein LTV1 homolog OS=Danio rerio GN=ltv1 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 32/36 (88%)

Query: 47 KNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHV 82
          + KK FI+KKNA++FHLVHRSQKDPL  DETAPQHV
Sbjct: 4  RKKKSFINKKNAVSFHLVHRSQKDPLAADETAPQHV 39

Danio rerio (taxid: 7955)

>sp|Q4V838|LTV1_XENLA Protein LTV1 homolog OS=Xenopus laevis GN=ltv1 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 29/36 (80%)

Query: 47 KNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHV 82
          + KK FI+ K A+TFHLVHRSQ+DPL  DETAPQ V
Sbjct: 4  RKKKPFIENKKAVTFHLVHRSQRDPLAADETAPQRV 39

Xenopus laevis (taxid: 8355)

>sp|Q7KN79|LTV1_DROME Protein LTV1 homolog OS=Drosophila melanogaster GN=CG7686 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 29/36 (80%)

Query: 47 KNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHV 82
          K KK +ID+K A+TFHLVHRSQ DPL+ DE APQ V
Sbjct: 3  KGKKPYIDRKKAVTFHLVHRSQHDPLVTDENAPQRV 38

Drosophila melanogaster (taxid: 7227)

>sp|Q10191|LTV1_SCHPO Protein LTV1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ltv1 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/41 (51%), Positives = 30/41 (73%)

Query: 49 KKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKTI 89
          KK+F++K  A TFHLVHRSQ+DP   DE A + V ++ +T+
Sbjct: 3  KKKFVNKNKAQTFHLVHRSQRDPQYHDENATERVLVSAETL 43

Involved in protein transport. Non-ribosomal factor required for efficient nuclear export of the ribosomal 40S subunit. May participate in intracellular sorting of GAP1 out of the endosome.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6NSQ7|LTV1_MOUSE Protein LTV1 homolog OS=Mus musculus GN=Ltv1 PE=2 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/25 (76%), Positives = 22/25 (88%)

Query: 58 AITFHLVHRSQKDPLLVDETAPQHV 82
          A++FHLVHRSQ+DPL  DETAPQ V
Sbjct: 15 AVSFHLVHRSQRDPLAADETAPQRV 39

Mus musculus (taxid: 10090)

>sp|Q0VC06|LTV1_BOVIN Protein LTV1 homolog OS=Bos taurus GN=LTV1 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 25/32 (78%)

Query: 58 AITFHLVHRSQKDPLLVDETAPQHVQMALKTI 89
          A++FHLVHRSQ+DPL  DETAPQ V +  + I
Sbjct: 15 AVSFHLVHRSQRDPLAADETAPQRVLLPTQKI 46

Bos taurus (taxid: 9913)

>sp|Q5R8B2|LTV1_PONAB Protein LTV1 homolog OS=Pongo abelii GN=LTV1 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 25/32 (78%)

Query: 58 AITFHLVHRSQKDPLLVDETAPQHVQMALKTI 89
          A++FHLVHRSQ+DPL  DE+APQ V +  + I
Sbjct: 15 AVSFHLVHRSQRDPLAADESAPQRVLLPTQKI 46

Pongo abelii (taxid: 9601)

>sp|Q96GA3|LTV1_HUMAN Protein LTV1 homolog OS=Homo sapiens GN=LTV1 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 25/32 (78%)

Query: 58 AITFHLVHRSQKDPLLVDETAPQHVQMALKTI 89
          A++FHLVHRSQ+DPL  DE+APQ V +  + I
Sbjct: 15 AVSFHLVHRSQRDPLAADESAPQRVLLPTQKI 46

Homo sapiens (taxid: 9606)

>sp|Q68FR7|LTV1_RAT Protein LTV1 homolog OS=Rattus norvegicus GN=Ltv1 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/25 (76%), Positives = 22/25 (88%)

Query: 58 AITFHLVHRSQKDPLLVDETAPQHV 82
          A++FHLVHRSQ+DPL  DETAPQ V
Sbjct: 15 AVSFHLVHRSQRDPLAADETAPQRV 39

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
322791061	483	hypothetical protein SINV_09994 [Solenop	0.358	0.068	0.878	8e-10
241239036	479	conserved hypothetical protein [Ixodes s	0.467	0.089	0.674	2e-09
307184811	486	Protein LTV1-like protein [Camponotus fl	0.358	0.067	0.848	2e-09
442760233	456	Putative secreted protein [Ixodes ricinu	0.467	0.094	0.674	2e-09
346469527	467	hypothetical protein [Amblyomma maculatu	0.467	0.092	0.674	2e-09
427789487	465	Hypothetical protein [Rhipicephalus pulc	0.467	0.092	0.674	3e-09
82179916	469	RecName: Full=Protein LTV1 homolog gi|55	0.391	0.076	0.777	4e-09
50539692	474	protein LTV1 homolog [Danio rerio] gi|49	0.391	0.075	0.777	4e-09
332018568	484	Protein LTV1-like protein [Acromyrmex ec	0.391	0.074	0.810	6e-09
66553144	479	PREDICTED: protein LTV1 homolog [Apis me	0.391	0.075	0.783	8e-09

>gi|322791061|gb|EFZ15661.1| hypothetical protein SINV_09994 [Solenopsis invicta]

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/33 (87%), Positives = 31/33 (93%)

Query: 50 KRFIDKKNAITFHLVHRSQKDPLLVDETAPQHV 82
          KRFIDKKNA+TFHLVHRSQKDPL+ DETAPQ V
Sbjct: 7  KRFIDKKNAVTFHLVHRSQKDPLVADETAPQRV 39

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241239036|ref|XP_002401463.1| conserved hypothetical protein [Ixodes scapularis] gi|215496185|gb|EEC05826.1| conserved hypothetical protein [Ixodes scapularis]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 46 GKNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKT 88
          G  +K+FIDKKNA+TF LVHRSQKDPL  DETAP+HV +  +T
Sbjct: 3  GGKRKKFIDKKNAVTFQLVHRSQKDPLQADETAPKHVLLEKRT 45

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184811|gb|EFN71125.1| Protein LTV1-like protein [Camponotus floridanus]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/33 (84%), Positives = 31/33 (93%)

Query: 50 KRFIDKKNAITFHLVHRSQKDPLLVDETAPQHV 82
          KRFIDKKN++TFHLVHRSQKDPL+ DETAPQ V
Sbjct: 7  KRFIDKKNSVTFHLVHRSQKDPLVADETAPQRV 39

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442760233|gb|JAA72275.1| Putative secreted protein [Ixodes ricinus]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 46 GKNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKT 88
          G  +K+FIDKKNA+TF LVHRSQKDPL  DETAP+HV +  +T
Sbjct: 3  GGKRKKFIDKKNAVTFQLVHRSQKDPLQADETAPKHVLLEKRT 45

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346469527|gb|AEO34608.1| hypothetical protein [Amblyomma maculatum]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 46 GKNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKT 88
          G  +K+FIDKKNA+TF LVHRSQKDPL  DETAP+HV +  +T
Sbjct: 3  GGKRKKFIDKKNAVTFQLVHRSQKDPLQADETAPKHVLLEKRT 45

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427789487|gb|JAA60195.1| Hypothetical protein [Rhipicephalus pulchellus]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 46 GKNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKT 88
          G  +K+FIDKKNA+TF LVHRSQKDPL  DETAP+HV +  +T
Sbjct: 3  GGKRKKFIDKKNAVTFQLVHRSQKDPLQADETAPKHVLLEKRT 45

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|82179916|sp|Q5U3J8.1|LTV1_DANRE RecName: Full=Protein LTV1 homolog gi|55250849|gb|AAH85516.1| Ltv1 protein [Danio rerio]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 32/36 (88%)

Query: 47 KNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHV 82
          + KK FI+KKNA++FHLVHRSQKDPL  DETAPQHV
Sbjct: 4  RKKKSFINKKNAVSFHLVHRSQKDPLAADETAPQHV 39

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|50539692|ref|NP_001002316.1| protein LTV1 homolog [Danio rerio] gi|49618891|gb|AAT68030.1| FLJ14909-like [Danio rerio]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 32/36 (88%)

Query: 47 KNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHV 82
          + KK FI+KKNA++FHLVHRSQKDPL  DETAPQHV
Sbjct: 4  RKKKSFINKKNAVSFHLVHRSQKDPLAADETAPQHV 39

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332018568|gb|EGI59157.1| Protein LTV1-like protein [Acromyrmex echinatior]

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/37 (81%), Positives = 33/37 (89%), Gaps = 1/37 (2%)

Query: 46 GKNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHV 82
          GK KK FIDKKN++TFHLVHRSQKDPL+ DETAPQ V
Sbjct: 4  GKTKK-FIDKKNSVTFHLVHRSQKDPLVADETAPQRV 39

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66553144|ref|XP_393157.2| PREDICTED: protein LTV1 homolog [Apis mellifera]

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 33/37 (89%), Gaps = 1/37 (2%)

Query: 46 GKNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHV 82
          GK KK FIDKKN++TFHLVHRSQ+DPL+ DETAPQ V
Sbjct: 10 GKTKK-FIDKKNSVTFHLVHRSQRDPLIADETAPQRV 45

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
UNIPROTKB|F1P1F7	469	LTV1 "Uncharacterized protein"	0.369	0.072	0.764	9e-09
UNIPROTKB|Q0VC06	475	LTV1 "Protein LTV1 homolog" [B	0.467	0.090	0.604	9.2e-09
RGD|1311264	470	Ltv1 "LTV1 homolog (S. cerevis	0.391	0.076	0.694	1.5e-08
FB|FBgn0027525	493	CG7686 [Drosophila melanogaste	0.391	0.073	0.694	2.1e-08
UNIPROTKB|Q96GA3	475	LTV1 "Protein LTV1 homolog" [H	0.467	0.090	0.581	2.5e-08
POMBASE|SPAC3F10.17	386	SPAC3F10.17 "ribosome biogenes	0.445	0.106	0.512	5.4e-06
UNIPROTKB|G4N1Q8	415	MGG_07524 "Uncharacterized pro	0.369	0.081	0.588	0.00033
ASPGD|ASPL0000049052	483	AN2262 [Emericella nidulans (t	0.369	0.070	0.529	0.00041

UNIPROTKB|F1P1F7 LTV1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 140 (54.3 bits), Expect = 9.0e-09, P = 9.0e-09
 Identities = 26/34 (76%), Positives = 29/34 (85%)

Query:    49 KKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHV 82
             KK FI+KK A+TFHLVHRSQKDPL  D+TAPQ V
Sbjct:     2 KKPFIEKKKAVTFHLVHRSQKDPLAADDTAPQRV 35

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q0VC06 LTV1 "Protein LTV1 homolog" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 9.2e-09, P = 9.2e-09
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query:    47 KNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKTI 89
             + KK FI+KK A++FHLVHRSQ+DPL  DETAPQ V +  + I
Sbjct:     4 RKKKPFIEKKKAVSFHLVHRSQRDPLAADETAPQRVLLPTQKI 46

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1311264 Ltv1 "LTV1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 138 (53.6 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query:    47 KNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHV 82
             + KK FI+KK A++FHLVHRSQ+DPL  DETAPQ V
Sbjct:     4 RKKKPFIEKKKAVSFHLVHRSQRDPLAADETAPQRV 39

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

FB|FBgn0027525 CG7686 [Drosophila melanogaster (taxid:7227)]

 Score = 137 (53.3 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 25/36 (69%), Positives = 29/36 (80%)

Query:    47 KNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHV 82
             K KK +ID+K A+TFHLVHRSQ DPL+ DE APQ V
Sbjct:     3 KGKKPYIDRKKAVTFHLVHRSQHDPLVTDENAPQRV 38

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q96GA3 LTV1 "Protein LTV1 homolog" [Homo sapiens (taxid:9606)]

 Score = 136 (52.9 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query:    47 KNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKTI 89
             + KK FI+KK A++FHLVHRSQ+DPL  DE+APQ V +  + I
Sbjct:     4 RKKKPFIEKKKAVSFHLVHRSQRDPLAADESAPQRVLLPTQKI 46

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

POMBASE|SPAC3F10.17 SPAC3F10.17 "ribosome biogenesis protein Ltv1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 113 (44.8 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 21/41 (51%), Positives = 30/41 (73%)

Query:    49 KKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKTI 89
             KK+F++K  A TFHLVHRSQ+DP   DE A + V ++ +T+
Sbjct:     3 KKKFVNKNKAQTFHLVHRSQRDPQYHDENATERVLVSAETL 43

GO:0000056 "ribosomal small subunit export from nucleus" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0030688 "preribosome, small subunit precursor" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|G4N1Q8 MGG_07524 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 97 (39.2 bits), Expect = 0.00033, P = 0.00033
 Identities = 20/34 (58%), Positives = 24/34 (70%)

Query:    49 KKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHV 82
             K ++IDKK A  F LVHR Q DPL+ DE+AP  V
Sbjct:     3 KGKWIDKKTATHFTLVHRPQNDPLIHDESAPSMV 36

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0030688 "preribosome, small subunit precursor" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

ASPGD|ASPL0000049052 AN2262 [Emericella nidulans (taxid:162425)]

 Score = 97 (39.2 bits), Expect = 0.00041, P = 0.00041
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query:    49 KKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHV 82
             +K++IDKKNA T+ L HRSQ DPL+ D  A   +
Sbjct:     4 RKQWIDKKNATTYQLFHRSQNDPLIHDPDAQDRI 37


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.139   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       92        92   0.00091  102 3  11 22  0.46    29
                                                     29  0.40    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  508 (54 KB)
  Total size of DFA:  101 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.14u 0.09s 11.23t   Elapsed:  00:00:13
  Total cpu time:  11.14u 0.09s 11.23t   Elapsed:  00:00:13
  Start:  Thu Aug 15 13:37:10 2013   End:  Thu Aug 15 13:37:23 2013

GO:0034599 "cellular response to oxidative stress" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IEA

GO:0000056 "ribosomal small subunit export from nucleus" evidence=IEA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0034448 "EGO complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0030688 "preribosome, small subunit precursor" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q10191	LTV1_SCHPO	No assigned EC number	0.5121	0.4456	0.1062	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	92
pfam04180	426	pfam04180, LTV, Low temperature viability protein	2e-10

>gnl|CDD|217943 pfam04180, LTV, Low temperature viability protein

 Score = 55.0 bits (132), Expect = 2e-10
 Identities = 21/29 (72%), Positives = 24/29 (82%)

Query: 54 DKKNAITFHLVHRSQKDPLLVDETAPQHV 82
          +KK A +FHLVHRSQ+DPL  DETAPQ V
Sbjct: 1  EKKKAQSFHLVHRSQRDPLAHDETAPQRV 29

The low-temperature viability protein LTV1 is involved in ribosome biogenesis 40S subunit production. Length = 426

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	92
PF04180	421	LTV: Low temperature viability protein ; InterPro:	99.71
KOG2637|consensus	446		99.63

>PF04180 LTV: Low temperature viability protein ; InterPro: IPR007307 The low-temperature viability protein LTV1 was identified in Saccharomyces cerevisiae, the exact function of this protein is unknown

Probab=99.71  E-value=4e-18  Score=136.93  Aligned_cols=35  Identities=66%  Similarity=1.035  Sum_probs=33.6

Q ss_pred             cCCCCeeEEEEeccCCCCCCCCCCCCCcEEEeccC
Q psy2194          54 DKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKT   88 (92)
Q Consensus        54 DKKnA~TFqLVHRSQ~DPL~~DedAsq~VLvPv~~   88 (92)
                      |||||+|||||||||+|||+||++||+|||+|+..
T Consensus         1 dKK~a~tf~lVHRsq~DPl~~D~~A~~~VL~p~~~   35 (421)
T PF04180_consen    1 DKKNAVTFQLVHRSQRDPLIADEDAPQHVLVPVDR   35 (421)
T ss_pred             CCCcceEEEEeccCCCCccccCCCcccceeeeccC
Confidence            79999999999999999999999999999999953

>KOG2637|consensus

Probab=99.63  E-value=8.3e-17  Score=133.98  Aligned_cols=42  Identities=62%  Similarity=0.858  Sum_probs=40.0

Q ss_pred             CCCcccccCCCCeeEEEEeccCCCCCCCCCCCCCcEEEeccC
Q psy2194          47 KNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKT   88 (92)
Q Consensus        47 k~KKkFIDKKnA~TFqLVHRSQ~DPL~~DedAsq~VLvPv~~   88 (92)
                      ||||||||||+||||+||||||+||+++|++||+||+++.+.
T Consensus         1 ~gkKkfIdkKkAqtF~LVhRsq~DP~~~De~a~~r~~e~~ee   42 (446)
T KOG2637|consen    1 MGKKKFIDKKKAQTFHLVHRSQRDPLYHDENAPQRVLERAEE   42 (446)
T ss_pred             CCccccccccccceeEeccCCCCCcccccCCcccchhhhhhh
Confidence            799999999999999999999999999999999999998753

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00