Psyllid ID: psy2197

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
Protein Sequence
MTQTTRVYRLTSSDVQIEEVTVEGGLNNSSHNGNKVQSNMIKITNIEIALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNIQKSVTIVSKSKYPYPYNGNYSVHIQHEHVTPMYKCPLLLYDKTEINTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHPGQVIARKPITKKHDHTEQVKMEDAPKSLISKGILRTDFSKLAVVLKLGAKTNKSIIWCQNSMARIKSTAGWNRTRSLALTRQTRYALPTKPTRPPVVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKVSHCNIVLIIKAAANYFMF
Secondary Structure (PSIPRED)
cccEEEEEEEcccccEEEEEEEEcccccccccccHHccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHccccccccccccccHHHccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEcccEEEEEEEEEcccccccccccHHHHccEcccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHcEcEEEEccccccccHHHHHccccccccccccHcHEEEEccccccccEEEEEcccccEEcccEEcccccccHccHcccccHHHHccccccHHHHHEEccccccccccEEEEEcccHHHEHcccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtqttrvyrltssdvqieevtvegglnnsshngnkvQSNMIKITNIEIALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNIQKSVTIVskskypypyngnysvhiqhehvtpmykcplllydkteintrdidnkLKFYHVKTNNMLHKNVELVCEeslgklpapidsvMSSIlfntsdnvyeKYIIVHpgqviarkpitkkhdhteqvkmedapksliskgilrtDFSKLAVVLKLGAKTNKSIIWCQNSMARIKSTAGWNRTRSLALTrqtryalptkptrppvvsLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKVSHCNIVLIIKAAANYFMF
Flexible Loop (DISEMBL)
mtqttrvyrltssdvqieevtvegglnnsshngnKVQSNMIKITNIEIALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNIQKSVTIVSKSKYPYPYNGNYSVHIQHEHVTPMYKCPLLLYDKTEINTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHpgqviarkpitkkhdhteqvkmedapksliskgilRTDFSKLAVVLKLGaktnksiiwcqNSMARIKSTAGWNRTRSLaltrqtryalptkptrppvvSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREyeakvshcnIVLIIKAAANYFMF
Low Complexity Region (SEG)
MTQTTRVYRLTSSDVQIEEVTVEGGLNNSSHNGNKVQSNMIKITNIEIALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNIQKSVTIVSKSKYPYPYNGNYSVHIQHEHVTPMYKCPLLLYDKTEINTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHPGQVIARKPITKKHDHTEQVKMEDAPKSLISKGILRTDFSKLAVVLKLGAKTNKSIIWCQNSMARIKSTAGWNRTRSLALTRQTRYALPTKPTRPPVVSLGIqqllaaekraaekvaeakkrkarrlkqakeeaQEDIEKYRQEREKIFREYEAKVSHCNIVLIIKAAANYFMF
Disordered region (IsUnstruct)
*************************************SNMIKITNIEIALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNIQKSVTIVSKSKYPYPYNGNYSVHIQHEHVTPMYKCPLLLYDKTEINTRDIDNKLKFYHVKTNNMLHKNVELVCE******************FNTSDNVYEKYIIVHPGQVIARKPI******************LISKGILRTDFSKLAVVLKLGAKTNKSIIWCQNSMARIKSTAGWNRTRSLALTRQTRYALP*******VVSLGIQQL*****************************************KIFREYEAKVSHCNIVLIIKAAANYFM*
Disordered Region (DISOPRED)
****TRV*RLTSSDVQIEEVTVE*****************IKITNIEIALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWR**QC*HAIEKRSSVVCANIEKLKNIQKSVTIVSKSKYPYPYNGNYS*****************************DNKLKFYHV***********************PIDSVMSSILFNTSDNVYEKYIIVHP***************************************KLAVVLKLGAKTNKSIIWCQNSMARIKSTAGWNRTR*******************************************************************************************AANYFMF
Disordered Region (DISEMBL)
MTQTTRVYRLTSSDVQIEEVTVEGGLNNSSHNGNKVQSNMIKITNIEIALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNIQKSVTIVSKSKYPYPYNGNYSVHIQHEHVTPMYKCPLLLYDKTEINTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHPGQVIARKPITKKHDHTEQVKMEDAPKSLISKGILRTDFSKLAVVLKLGAKTNKSIIWCQNSMARIKSTAGWNRTRSLALTRQTRYALPTKPTRPPVVSLGIQQLLAA******************************EKYRQEREKIFREYEAKVSHCNIVLIIKAAANYFMF
Disordered Region (DISPRO)
***TTRVYRLTSSDVQIEEVTVEGGLNNSSHNGNKVQSNMIKITNIEIALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNIQKSVTIVSKSKYPYPYNGNYSVHIQHEHVTPMYKCPLLLYDKTEINTRDIDNKLKFYHVKTNNM*HKNVELV**ESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHPGQVIARKPITKKHD*TEQVKMEDAPKSLISKGILRTDFSKLAVVLKLGAKTNKSIIWCQNSMARIKSTAGWNRTRSLALTRQTRYALPTKPTRPPVVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKVSHCNIVLIIKAAANYFMF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTQTTRVYRLTSSDVQIEEVTVEGGLNNSSHNGNKVQSNMIKITNIEIALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNIQKSVTIVSKSKYPYPYNGNYSVHIQHEHVTPMYKCPLLLYDKTEINTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHPGQVIARKPITKKHDHTEQVKMEDAPKSLISKGILRTDFSKLAVVLKLGAKTNKSIIWCQNSMARIKSTAGWNRTRSLALTRQTRYALPTKPTRPPVVSLGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYEAKVSHCNIVLIIKAAANYFMF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	394	2.2.26 [Sep-21-2011]
A7Z063	471	WAS protein family homolo	yes	N/A	0.487	0.407	0.325	1e-19
Q25532	117	V-type proton ATPase subu	N/A	N/A	0.139	0.470	0.818	6e-18
Q5ZKA6	476	WAS protein family homolo	yes	N/A	0.535	0.443	0.296	2e-17
Q9XZH6	117	V-type proton ATPase subu	yes	N/A	0.139	0.470	0.818	2e-17
Q6VEQ5	465	WAS protein family homolo	yes	N/A	0.479	0.406	0.297	1e-16
Q8VDD8	475	WAS protein family homolo	yes	N/A	0.482	0.4	0.319	3e-16
A8K0Z3	465	WAS protein family homolo	yes	N/A	0.479	0.406	0.293	4e-16
B2RYF7	475	WAS protein family homolo	yes	N/A	0.482	0.4	0.314	2e-15
Q28DN4	472	WAS protein family homolo	yes	N/A	0.484	0.404	0.323	2e-15
Q5U4A3	472	WAS protein family homolo	N/A	N/A	0.484	0.404	0.287	3e-15

>sp|A7Z063|WASH1_BOVIN WAS protein family homolog 1 OS=Bos taurus GN=WASH1 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 112/212 (52%), Gaps = 20/212 (9%)

Query: 48  IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
           + LIQ DL+  + I Q+A++L  L +   ++F    + +  +R  L AI +R S+  A I
Sbjct: 17  VPLIQPDLRREEAIQQVADALQYLQKVSGDIFSRISQRVELSRSQLQAIGERVSLAQAKI 76

Query: 108 EKLKNIQKSVTIVSKSKYPYPYN----GNYSVHIQHEHVT--PMYKCPLLLYDKTEINTR 161
           EK+K  +K++ + S +KYP P      G+  +  Q   +   P ++   +      ++ R
Sbjct: 77  EKIKGSKKAIKVFSSAKYPAPERLQEYGSIFMGAQDPGLQRRPRHR---IQSKHRPLDER 133

Query: 162 DIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHP 221
            +  KLKF+ V  N       E   EE LG LP+ I SV S +LFNT++N+Y+KY+ + P
Sbjct: 134 ALQEKLKFFPVCVNTKPEPEDE--AEEGLGGLPSNISSVSSLLLFNTTENLYKKYVFLDP 191

Query: 222 GQVIARKPITKKH----DHTEQVKMEDAPKSL 249
              +A   +TK H      TE+ K+ DAP S+
Sbjct: 192 ---LAGA-VTKTHVMLGAETEE-KLFDAPLSI 218

Acts as a nucleation-promoting factor at the surface of endosomes, where it recruits and activates the Arp2/3 complex to induce actin polymerization, playing a key role in the fission of tubules that serve as transport intermediates during endosome sorting.
Bos taurus (taxid: 9913)

>sp|Q25532|VATG_MANSE V-type proton ATPase subunit G OS=Manduca sexta PE=3 SV=1

 Score = 92.0 bits (227), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 54/55 (98%)

Query: 321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 375
           GIQQLLAAEKRAAEKV+EA+KRKA+RLKQAKEEAQ+++EKYRQERE+ F+E+EAK
Sbjct: 7   GIQQLLAAEKRAAEKVSEARKRKAKRLKQAKEEAQDEVEKYRQERERQFKEFEAK 61

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Manduca sexta (taxid: 7130)

>sp|Q5ZKA6|WASH1_CHICK WAS protein family homolog 1 OS=Gallus gallus GN=WASH1 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 18/229 (7%)

Query: 36  VQSNMIKITNIEIALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHA 95
            Q + ++     + LIQ DL+  + + Q+A++L  L +   ++F+   + +  +R  L A
Sbjct: 5   AQKHFLEGQTYSVPLIQPDLRREEAVQQVADALQYLQKVSGDIFNRISQRVETSRAQLQA 64

Query: 96  IEKRSSVVCANIEKLKNIQKSVTIVSKSKYPYP--YNGNYSVHIQHEHVT----PMYKCP 149
           I +R ++  A IEK+K  +K++ + S +KYP P       S+    E  +    P +K  
Sbjct: 65  ISERVTLAQAKIEKIKGSKKAIKVFSSAKYPAPERLQEYCSIFAGAEDPSKQKWPRHK-- 122

Query: 150 LLLYDKTEINTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTS 209
            +      ++ + +  KLK++ V  N  +H+  E   EE LG LP  I S+ S +LFNT+
Sbjct: 123 -IQSKHRMLDEKSLQEKLKYFPVCVNTKIHQ--EDDAEEGLGSLPRNISSLSSLLLFNTT 179

Query: 210 DNVYEKYIIVHPGQVIARKPITKKHDHTE---QVKMEDAPKSLISKGIL 255
           +N+Y+KY+ + P   +A   +TK H   E   + K+ DAP S+  +G L
Sbjct: 180 ENLYKKYVFLDP---LAGA-VTKTHVALETETEEKLFDAPLSITERGQL 224

Acts as a nucleation-promoting factor at the surface of endosomes, where it recruits and activates the Arp2/3 complex to induce actin polymerization, playing a key role in the fission of tubules that serve as transport intermediates during endosome sorting.

Gallus gallus (taxid: 9031)

>sp|Q9XZH6|VATG_DROME V-type proton ATPase subunit G OS=Drosophila melanogaster GN=Vha13 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 53/55 (96%)

Query: 321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 375
           GIQQLLAAEK+AAEKVAEA+KRKARRLKQAK+EA E+IEK+RQERE+ F+E+EAK
Sbjct: 7   GIQQLLAAEKKAAEKVAEARKRKARRLKQAKDEATEEIEKFRQERERAFKEFEAK 61

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Drosophila melanogaster (taxid: 7227)

>sp|Q6VEQ5|WASH2_HUMAN WAS protein family homolog 2 OS=Homo sapiens GN=WASH2P PE=2 SV=2

 Score = 87.8 bits (216), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 111/215 (51%), Gaps = 26/215 (12%)

Query: 48  IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
           + LIQ DL+  + + Q+A++L  L +   ++F    + + ++R  + AI ++ S+  A I
Sbjct: 17  VPLIQPDLRREEAVQQMADALQYLQKVSGDIFSRISQQVEQSRSQVQAIGEKVSLAQAKI 76

Query: 108 EKLKNIQKSVTIVSKSKYPYP---------YNGNYSVHIQHEHVTPMYKCPLLLYDKTEI 158
           EK+K  +K++ + S +KYP P         + G     +Q     P ++   +      +
Sbjct: 77  EKIKGSKKAIKVFSSAKYPAPERLQEYGSIFTGAQDPGLQRR---PRHR---IQSKHRPL 130

Query: 159 NTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYII 218
           + R +  KLK + V  +       E   EE LG LP+ I SV S +LFNT++N+Y+KY+ 
Sbjct: 131 DERALQEKLKDFPVCVST--KPEPEDDAEEGLGGLPSNISSVSSLLLFNTTENLYKKYVF 188

Query: 219 VHPGQVIARKPITKKH----DHTEQVKMEDAPKSL 249
           + P   +A   +TK H      TE+ K+ DAP S+
Sbjct: 189 LDP---LAGA-VTKTHVMLGAETEE-KLFDAPLSI 218

Acts as a nucleation-promoting factor at the surface of endosomes, where it recruits and activates the Arp2/3 complex to induce actin polymerization, playing a key role in the fission of tubules that serve as transport intermediates during endosome sorting.

Homo sapiens (taxid: 9606)

>sp|Q8VDD8|WASH1_MOUSE WAS protein family homolog 1 OS=Mus musculus GN=Wash1 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 111/213 (52%), Gaps = 23/213 (10%)

Query: 48  IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
           + LIQ DL+  + I Q+A++L  L     ++F    + +  +R+ L AI +R S+  A I
Sbjct: 17  VPLIQPDLRREEAIQQVADALQYLQNISGDIFSRISRRVELSRRQLQAISERVSLAQAKI 76

Query: 108 EKLKNIQKSVTIVSKSKYPYP---------YNGNYSVHIQHEHVTPMYKCPLLLYDKTEI 158
           EK+K  +K++ + S +KYP P         + G     +Q     P Y+   +      +
Sbjct: 77  EKIKGSKKAIKVFSSAKYPAPEHLQEYGSIFTGALDPGLQRR---PRYR---IQSKHRPL 130

Query: 159 NTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYII 218
           + R +  KLK++ V  N       E   EE LG LP+ I S+ S +LFNT++N+Y+KY+ 
Sbjct: 131 DERALQEKLKYFPVCVNTKSEPEDE--AEEGLGGLPSNISSISSLLLFNTTENLYKKYVF 188

Query: 219 VHPGQVIARKPITKKHD--HTEQVKMEDAPKSL 249
           + P   +A   +TK H    TE+ K+ DAP S+
Sbjct: 189 LDP---LAGA-VTKTHTMLGTEEEKLFDAPLSI 217

Acts as a nucleation-promoting factor at the surface of endosomes, where it recruits and activates the Arp2/3 complex to induce actin polymerization, playing a key role in the fission of tubules that serve as transport intermediates during endosome sorting.

Mus musculus (taxid: 10090)

>sp|A8K0Z3|WASH1_HUMAN WAS protein family homolog 1 OS=Homo sapiens GN=WASH1 PE=1 SV=2

 Score = 86.3 bits (212), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 110/215 (51%), Gaps = 26/215 (12%)

Query: 48  IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
           +  IQ DL+  + + Q+A++L  L +   ++F    + + ++R  + AI ++ S+  A I
Sbjct: 17  VPFIQPDLRREEAVQQMADALQYLQKVSGDIFSRISQQVEQSRSQVQAIGEKVSLAQAKI 76

Query: 108 EKLKNIQKSVTIVSKSKYPYP---------YNGNYSVHIQHEHVTPMYKCPLLLYDKTEI 158
           EK+K  +K++ + S +KYP P         + G     +Q     P ++   +      +
Sbjct: 77  EKIKGSKKAIKVFSSAKYPAPGRLQEYGSIFTGAQDPGLQRR---PRHR---IQSKHRPL 130

Query: 159 NTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYII 218
           + R +  KLK + V  +       E   EE LG LP+ I SV S +LFNT++N+Y+KY+ 
Sbjct: 131 DERALQEKLKDFPVCVST--KPEPEDDAEEGLGGLPSNISSVSSLLLFNTTENLYKKYVF 188

Query: 219 VHPGQVIARKPITKKH----DHTEQVKMEDAPKSL 249
           + P   +A   +TK H      TE+ K+ DAP S+
Sbjct: 189 LDP---LAGA-VTKTHVMLGAETEE-KLFDAPLSI 218

Acts as a nucleation-promoting factor at the surface of endosomes, where it recruits and activates the Arp2/3 complex to induce actin polymerization, playing a key role in the fission of tubules that serve as transport intermediates during endosome sorting.

Homo sapiens (taxid: 9606)

>sp|B2RYF7|WASH1_RAT WAS protein family homolog 1 OS=Rattus norvegicus GN=Wash1 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 111/213 (52%), Gaps = 23/213 (10%)

Query: 48  IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
           + LIQ DL+  + I Q+A++L  L     ++F    + +  +R+ L AI +R S+  A I
Sbjct: 17  VPLIQPDLRREEAIQQVADALQYLQNISGDIFSRISQRVELSRRQLQAIGERVSLAQAKI 76

Query: 108 EKLKNIQKSVTIVSKSKYPYP---------YNGNYSVHIQHEHVTPMYKCPLLLYDKTEI 158
           EK+K  +K++ + S +KYP P         + G     +Q     P Y+   +      +
Sbjct: 77  EKIKGSKKAIKVFSSAKYPAPEHLQEYNSVFTGALDPGLQRR---PRYR---IQSKHRPL 130

Query: 159 NTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYII 218
           + R +  KLK++ V  +       E   EE LG LP+ I S+ S +LFNT++N+Y+KY+ 
Sbjct: 131 DERALQEKLKYFPVCVSTKSEPEDE--AEEGLGGLPSNISSISSLLLFNTTENLYKKYVF 188

Query: 219 VHPGQVIARKPITKKHD--HTEQVKMEDAPKSL 249
           + P   +A   +TK H    TE+ K+ DAP S+
Sbjct: 189 LDP---LAGA-VTKTHTMLGTEEEKLFDAPLSI 217

Acts as a nucleation-promoting factor at the surface of endosomes, where it recruits and activates the Arp2/3 complex to induce actin polymerization, playing a key role in the fission of tubules that serve as transport intermediates during endosome sorting.

Rattus norvegicus (taxid: 10116)

>sp|Q28DN4|WASH1_XENTR WAS protein family homolog 1 OS=Xenopus tropicalis GN=wash1 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 102/213 (47%), Gaps = 22/213 (10%)

Query: 48  IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
           + LI  DL+  + I QI ++L  L     ++F    + +   R  L  I  R S+  A I
Sbjct: 14  LPLILPDLRREEAIHQITDTLQHLQTVSNDIFSRILQRVETNRGQLQRINGRLSLAQAKI 73

Query: 108 EKLKNIQKSVTIVSKSKYPYPYNGNYSVHIQ-HEHVTPMYKCPLL---LYDKTEINTRDI 163
           E+LK I+K++ + S +KYP P       H+Q +  V    +   L   L  K +   R +
Sbjct: 74  ERLKGIKKAIKVFSSAKYPAPE------HLQEYSSVFAGAEDGWLAKKLRHKIQSKHRPL 127

Query: 164 D-----NKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYII 218
           D      KLK++ V  N       E   EE LG LP  I SV S +LFNT++N+Y+KY+ 
Sbjct: 128 DEQAVQEKLKYFPVCVNT--RGQDEESAEEGLGSLPRNISSVSSLLLFNTTENLYKKYVF 185

Query: 219 VHP--GQVIARKPITKKHDHTEQVKMEDAPKSL 249
           + P  G V    P  +  D     K+ DAP S+
Sbjct: 186 LDPLAGVVTRTNPALEGEDEE---KLFDAPLSI 215

Acts as a nucleation-promoting factor at the surface of endosomes, where it recruits and activates the Arp2/3 complex to induce actin polymerization, playing a key role in the fission of tubules that serve as transport intermediates during endosome sorting.

Xenopus tropicalis (taxid: 8364)

>sp|Q5U4A3|WASH1_XENLA WAS protein family homolog 1 OS=Xenopus laevis GN=wash1 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 28/219 (12%)

Query: 48  IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
           + LI  DL+  + I QI ++L  L     ++F    + +   R  L  I  R S+  A I
Sbjct: 14  LPLILPDLRREEAIHQITDTLQHLQTVSNDIFSRILQRVETNRDQLQRINGRLSLAQAKI 73

Query: 108 EKLKNIQKSVTIVSKSKYPYP---------YNG---NYSVHIQHEHVTPMYKCPLLLYDK 155
           E+LK  +K++ + S +KYP P         + G    +S   Q   +   ++        
Sbjct: 74  ERLKGSKKAIKVFSSAKYPAPDRLQEYSSIFAGAKDGWSAKKQRHKIQSKHRP------- 126

Query: 156 TEINTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEK 215
             ++ + +  KLK++ V  N       E   EE LG LP  I+SV S +LFNT++N+Y+K
Sbjct: 127 --LDEQAVQEKLKYFPVCVNT--RGQDEESAEEGLGSLPRNINSVSSLLLFNTTENLYKK 182

Query: 216 YIIVHP--GQVIARKPITKKHDHTEQVKMEDAPKSLISK 252
           Y+++ P  G V    P  +  D     K+ DAP S+  +
Sbjct: 183 YVLLDPLAGVVTRTNPALEGEDEE---KLFDAPLSITKR 218

Acts as a nucleation-promoting factor at the surface of endosomes, where it recruits and activates the Arp2/3 complex to induce actin polymerization, playing a key role in the fission of tubules that serve as transport intermediates during endosome sorting.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
390334303	430	PREDICTED: WAS protein family homolog 1-	0.515	0.472	0.325	5e-20
194211571	472	PREDICTED: WAS protein family homolog 1	0.479	0.400	0.325	3e-19
66553147	118	PREDICTED: v-type proton ATPase subunit	0.139	0.466	0.909	4e-18
90820012	119	vacuolar ATPase G subunit-like protein [	0.139	0.462	0.927	4e-18
340712629	118	PREDICTED: v-type proton ATPase subunit	0.139	0.466	0.909	4e-18
350399683	118	PREDICTED: V-type proton ATPase subunit	0.139	0.466	0.909	5e-18
157427938	471	WAS protein family homolog 1 [Bos taurus	0.487	0.407	0.325	9e-18
395836590	470	PREDICTED: WAS protein family homolog 1-	0.5	0.419	0.294	2e-17
291392655	471	PREDICTED: WAS protein family homolog 1	0.421	0.352	0.311	3e-17
328715485	121	PREDICTED: v-type proton ATPase subunit	0.139	0.454	0.890	4e-17

>gi|390334303|ref|XP_785243.3| PREDICTED: WAS protein family homolog 1-like [Strongylocentrotus purpuratus]

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 116/209 (55%), Gaps = 6/209 (2%)

Query: 47  EIALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCAN 106
           +I +IQ DL+  +TI QIA++L+ L++   +VFD  +K +      L  I KR  V  A 
Sbjct: 7   DIPIIQPDLRREETIHQIADTLEYLEKIANDVFDRIEKRVTDNHTRLTTINKRLDVAQAK 66

Query: 107 IEKLKNIQKSVTIVSKSKYPYPYNGNY--SVHIQHEHVTPMYKCPLLLYDKTE-INTRDI 163
           ++K+KN +K++ + S SKYP P   +   SV   +  ++ + +    L  K + +++R +
Sbjct: 67  VDKIKNSRKAIKVFSSSKYPAPEKNDVYQSVFADNTDLSSIPRPSRKLASKHQTLDSRAL 126

Query: 164 DNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHPGQ 223
             KL+FY+V+ N            E LG LP  + S+ S +LFNTS+N Y+KY+++ P  
Sbjct: 127 KEKLQFYNVQLNVRKKDKDGENTWEGLGGLPRNVGSITSLLLFNTSENPYKKYVMIDPLG 186

Query: 224 VIARKPITKKHDHTEQVKMEDAPKSLISK 252
            + +   T+K    EQ +M  AP S++ +
Sbjct: 187 AVTK---TRKAIEEEQQEMGQAPTSILQR 212

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|194211571|ref|XP_001493235.2| PREDICTED: WAS protein family homolog 1 [Equus caballus]

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 112/215 (52%), Gaps = 26/215 (12%)

Query: 48  IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
           + LIQ DL+  + I Q+A++L  L +   ++F    + +  +R  L AI +R S+  A I
Sbjct: 17  VPLIQPDLRREEAIQQVADALQYLQKVSGDIFSRISQRVELSRSQLQAIGERVSLAQAKI 76

Query: 108 EKLKNIQKSVTIVSKSKYPYP---------YNGNYSVHIQHEHVTPMYKCPLLLYDKTEI 158
           EK+K  +K++ + S +KYP P         + G     +Q     P Y+   +      +
Sbjct: 77  EKIKGSKKAIKVFSSAKYPAPERLQEYGSIFTGAQDPGLQRR---PRYR---IQSKHRPL 130

Query: 159 NTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYII 218
           + R +  KLK++ V  N  L    E   EE LG LP+ I SV S +LFNT++N+Y+KY+ 
Sbjct: 131 DERALQEKLKYFPVCVNTKLEPEDE--AEEGLGGLPSNISSVSSLLLFNTTENLYKKYVF 188

Query: 219 VHPGQVIARKPITKKH----DHTEQVKMEDAPKSL 249
           + P   +A   +TK H      TE+ K+ DAP S+
Sbjct: 189 LDP---LAGA-VTKTHVMLGAETEE-KLFDAPLSI 218

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|66553147|ref|XP_624346.1| PREDICTED: v-type proton ATPase subunit G [Apis mellifera] gi|380011755|ref|XP_003689962.1| PREDICTED: V-type proton ATPase subunit G-like [Apis florea]

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 54/55 (98%)

Query: 321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 375
           GIQQLLAAEKRAAEKVAEA+KRKARRLKQAKEEAQ++IEKYRQEREK FRE+EAK
Sbjct: 7   GIQQLLAAEKRAAEKVAEARKRKARRLKQAKEEAQDEIEKYRQEREKQFREFEAK 61

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|90820012|gb|ABD98763.1| vacuolar ATPase G subunit-like protein [Graphocephala atropunctata]

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/55 (92%), Positives = 54/55 (98%)

Query: 321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 375
           GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQE+IEKYRQEREK F+E+EAK
Sbjct: 7   GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEEIEKYRQEREKQFKEFEAK 61

Source: Graphocephala atropunctata

Species: Graphocephala atropunctata

Genus: Graphocephala

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712629|ref|XP_003394858.1| PREDICTED: v-type proton ATPase subunit G-like [Bombus terrestris]

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 54/55 (98%)

Query: 321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 375
           GIQQLLAAEKRAAEKVAEA+KRKARRLKQAKEEAQ++IEKYRQEREK FRE+EAK
Sbjct: 7   GIQQLLAAEKRAAEKVAEARKRKARRLKQAKEEAQDEIEKYRQEREKQFREFEAK 61

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399683|ref|XP_003485608.1| PREDICTED: V-type proton ATPase subunit G-like [Bombus impatiens]

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 54/55 (98%)

Query: 321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 375
           GIQQLLAAEKRAAEKVAEA+KRKARRLKQAKEEAQ++IEKYRQEREK FRE+EAK
Sbjct: 7   GIQQLLAAEKRAAEKVAEARKRKARRLKQAKEEAQDEIEKYRQEREKQFREFEAK 61

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157427938|ref|NP_001098876.1| WAS protein family homolog 1 [Bos taurus] gi|284022089|sp|A7Z063.1|WASH1_BOVIN RecName: Full=WAS protein family homolog 1 gi|157279137|gb|AAI53262.1| LOC533602 protein [Bos taurus] gi|296487056|tpg|DAA29169.1| TPA: WAS protein family homolog 1 [Bos taurus]

 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 112/212 (52%), Gaps = 20/212 (9%)

Query: 48  IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
           + LIQ DL+  + I Q+A++L  L +   ++F    + +  +R  L AI +R S+  A I
Sbjct: 17  VPLIQPDLRREEAIQQVADALQYLQKVSGDIFSRISQRVELSRSQLQAIGERVSLAQAKI 76

Query: 108 EKLKNIQKSVTIVSKSKYPYPYN----GNYSVHIQHEHVT--PMYKCPLLLYDKTEINTR 161
           EK+K  +K++ + S +KYP P      G+  +  Q   +   P ++   +      ++ R
Sbjct: 77  EKIKGSKKAIKVFSSAKYPAPERLQEYGSIFMGAQDPGLQRRPRHR---IQSKHRPLDER 133

Query: 162 DIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHP 221
            +  KLKF+ V  N       E   EE LG LP+ I SV S +LFNT++N+Y+KY+ + P
Sbjct: 134 ALQEKLKFFPVCVNTKPEPEDE--AEEGLGGLPSNISSVSSLLLFNTTENLYKKYVFLDP 191

Query: 222 GQVIARKPITKKH----DHTEQVKMEDAPKSL 249
              +A   +TK H      TE+ K+ DAP S+
Sbjct: 192 ---LAGA-VTKTHVMLGAETEE-KLFDAPLSI 218

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395836590|ref|XP_003791236.1| PREDICTED: WAS protein family homolog 1-like [Otolemur garnettii]

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 112/221 (50%), Gaps = 24/221 (10%)

Query: 41  IKITNIEIALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRS 100
           + +    + LIQ DL+  + I Q+A++L  L +   ++F    + +  +R  L AI +R 
Sbjct: 10  LAVQTYAVPLIQPDLRREEAIQQVADALQYLQKVSTDIFSRISQRVELSRSQLQAIGERV 69

Query: 101 SVVCANIEKLKNIQKSVTIVSKSKYPYP---------YNGNYSVHIQHEHVTPMYKCPLL 151
           S+  A IEK+K  +K++ + S +KYP P         + G     +Q     P ++   +
Sbjct: 70  SLAQAKIEKIKGCKKAIKVFSSAKYPAPERLQEHSSIFTGAQDPSLQRR---PRHR---I 123

Query: 152 LYDKTEINTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDN 211
                 ++ R +  KL+++ V  N       E   EE LG LP+ I SV S +LFNT++N
Sbjct: 124 QSKHRPLDGRALQEKLQYFPVCVNT--KPQPEDAAEEGLGALPSNISSVSSLLLFNTTEN 181

Query: 212 VYEKYIIVHPGQVIARKPITKKH---DHTEQVKMEDAPKSL 249
           +Y+KY+++ P   +A   +TK H       + K+ DAP S+
Sbjct: 182 LYKKYVLLDP---LAGA-VTKTHVMLGAEAEEKLFDAPLSI 218

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291392655|ref|XP_002712809.1| PREDICTED: WAS protein family homolog 1 [Oryctolagus cuniculus]

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 17/183 (9%)

Query: 48  IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
           +ALIQ DL+  + I Q+A++L  L +   ++F    + +  +R  L AI +R S+  A I
Sbjct: 17  VALIQPDLRREEAIQQVADALQYLQKVSGDIFSRISQRVELSRSQLQAIGQRVSLAQAKI 76

Query: 108 EKLKNIQKSVTIVSKSKYPYP---------YNGNYSVHIQHEHVTPMYKCPLLLYDKTEI 158
           EK+K  +K++ + S +KYP P         ++G     +Q     P ++   +      +
Sbjct: 77  EKIKGSKKAIKVFSSAKYPAPERLQEYGSIFSGAQDPGLQGR---PRHR---IQSKHRPL 130

Query: 159 NTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYII 218
           + R +  KLK++ V  +       E   EE LG LP+ I SV S +LFNT++N+Y+KY+ 
Sbjct: 131 DERALQEKLKYFPVCVST--KPGPEDEAEEGLGGLPSNISSVSSLLLFNTTENLYKKYVF 188

Query: 219 VHP 221
           + P
Sbjct: 189 LDP 191

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328715485|ref|XP_003245642.1| PREDICTED: v-type proton ATPase subunit G-like [Acyrthosiphon pisum]

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/55 (89%), Positives = 53/55 (96%)

Query: 321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 375
           GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQ++IEKYRQEREK F+E+E K
Sbjct: 7   GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQDEIEKYRQEREKQFKEFEIK 61

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
UNIPROTKB|F1NMK3	476	WASH1 "WAS protein family homo	0.545	0.451	0.300	4.8e-21
UNIPROTKB|Q5ZKA6	476	WASH1 "WAS protein family homo	0.545	0.451	0.300	4.8e-21
MGI|MGI:1916017	475	Wash "WAS protein family homol	0.502	0.416	0.338	5.9e-20
RGD|1310196	475	Wash "WAS protein family homol	0.494	0.410	0.328	3e-19
UNIPROTKB|F1LSU9	475	Wash2 "Protein Wash2" [Rattus	0.494	0.410	0.328	3e-19
UNIPROTKB|F1LR35	505	Wash2 "Protein Wash2" [Rattus	0.494	0.386	0.328	3.6e-19
UNIPROTKB|A7Z063	471	WASH1 "WAS protein family homo	0.505	0.422	0.321	3.2e-18
UNIPROTKB|F1SK83	469	WASH1 "Uncharacterized protein	0.510	0.428	0.322	1.8e-17
UNIPROTKB|E2QXP1	471	WASH1 "Uncharacterized protein	0.510	0.426	0.322	5.5e-17
UNIPROTKB|Q28DN4	472	wash1 "WAS protein family homo	0.535	0.447	0.307	3e-16

UNIPROTKB|F1NMK3 WASH1 "WAS protein family homolog 1" [Gallus gallus (taxid:9031)]

 Score = 261 (96.9 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 67/223 (30%), Positives = 117/223 (52%)

Query:    37 QSNMIKITNIEIALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAI 96
             Q++ ++     + LIQ DL+  + + Q+A++L  L +   ++F+   + +  +R  L AI
Sbjct:     6 QNHFLEGQTYSVPLIQPDLRREEAVQQVADALQYLQKVSGDIFNRISQRVETSRAQLQAI 65

Query:    97 EKRSSVVCANIEKLKNIQKSVTIVSKSKYPYPYN-GNY-SVHIQHEHVTPMYKCPL-LLY 153
              +R ++  A IEK+K  +K++ + S +KYP P     Y S+    E      K P   + 
Sbjct:    66 SERVTLAQAKIEKIKGSKKAIKVFSSAKYPAPERLQEYCSIFAGAEDPAKQ-KWPRHKIQ 124

Query:   154 DKTE-INTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNV 212
              K   ++ + +  KLK++ V  N  +H+  +   EE LG LP  I S+ S +LFNT++N+
Sbjct:   125 SKHRMLDEKSLQEKLKYFPVCVNTKIHQEDD--AEEGLGSLPRNISSLSSLLLFNTTENL 182

Query:   213 YEKYIIVHPGQVIARKPITKKHDHTEQVKMEDAPKSLISKGIL 255
             Y+KY+ + P      K        TE+ K+ DAP S+  +G L
Sbjct:   183 YKKYVFLDPLAGAVTKTHVALETETEE-KLFDAPLSITERGQL 224

GO:0003779 "actin binding" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

UNIPROTKB|Q5ZKA6 WASH1 "WAS protein family homolog 1" [Gallus gallus (taxid:9031)]

 Score = 261 (96.9 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 67/223 (30%), Positives = 117/223 (52%)

Query:    37 QSNMIKITNIEIALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAI 96
             Q + ++     + LIQ DL+  + + Q+A++L  L +   ++F+   + +  +R  L AI
Sbjct:     6 QKHFLEGQTYSVPLIQPDLRREEAVQQVADALQYLQKVSGDIFNRISQRVETSRAQLQAI 65

Query:    97 EKRSSVVCANIEKLKNIQKSVTIVSKSKYPYPYN-GNY-SVHIQHEHVTPMYKCPL-LLY 153
              +R ++  A IEK+K  +K++ + S +KYP P     Y S+    E  +   K P   + 
Sbjct:    66 SERVTLAQAKIEKIKGSKKAIKVFSSAKYPAPERLQEYCSIFAGAEDPSKQ-KWPRHKIQ 124

Query:   154 DKTE-INTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNV 212
              K   ++ + +  KLK++ V  N  +H+  +   EE LG LP  I S+ S +LFNT++N+
Sbjct:   125 SKHRMLDEKSLQEKLKYFPVCVNTKIHQEDD--AEEGLGSLPRNISSLSSLLLFNTTENL 182

Query:   213 YEKYIIVHPGQVIARKPITKKHDHTEQVKMEDAPKSLISKGIL 255
             Y+KY+ + P      K        TE+ K+ DAP S+  +G L
Sbjct:   183 YKKYVFLDPLAGAVTKTHVALETETEE-KLFDAPLSITERGQL 224

GO:0003779 "actin binding" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=ISS

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=ISS

GO:0005769 "early endosome" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

GO:0071203 "WASH complex" evidence=ISS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISS

GO:0043014 "alpha-tubulin binding" evidence=ISS

MGI|MGI:1916017 Wash "WAS protein family homolog" [Mus musculus (taxid:10090)]

 Score = 254 (94.5 bits), Expect = 5.9e-20, P = 5.9e-20
 Identities = 71/210 (33%), Positives = 114/210 (54%)

Query:    48 IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
             + LIQ DL+  + I Q+A++L  L     ++F    + +  +R+ L AI +R S+  A I
Sbjct:    17 VPLIQPDLRREEAIQQVADALQYLQNISGDIFSRISRRVELSRRQLQAISERVSLAQAKI 76

Query:   108 EKLKNIQKSVTIVSKSKYPYPYNGNYSVHIQHEHVTP-MYKCPLL-LYDKTE-INTRDID 164
             EK+K  +K++ + S +KYP P +      I    + P + + P   +  K   ++ R + 
Sbjct:    77 EKIKGSKKAIKVFSSAKYPAPEHLQEYGSIFTGALDPGLQRRPRYRIQSKHRPLDERALQ 136

Query:   165 NKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHPGQV 224
              KLK++ V  N       E   EE LG LP+ I S+ S +LFNT++N+Y+KY+ + P   
Sbjct:   137 EKLKYFPVCVNTKSEPEDE--AEEGLGGLPSNISSISSLLLFNTTENLYKKYVFLDP--- 191

Query:   225 IARKPITKKHDH--TEQVKMEDAPKSLISK 252
             +A   +TK H    TE+ K+ DAP S ISK
Sbjct:   192 LAGA-VTKTHTMLGTEEEKLFDAPLS-ISK 219

GO:0003779 "actin binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=IMP

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IMP

GO:0055037 "recycling endosome" evidence=IDA

RGD|1310196 Wash "WAS protein family homolog" [Rattus norvegicus (taxid:10116)]

 Score = 249 (92.7 bits), Expect = 3.0e-19, P = 3.0e-19
 Identities = 70/213 (32%), Positives = 114/213 (53%)

Query:    48 IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
             + LIQ DL+  + I Q+A++L  L     ++F    + +  +R+ L AI +R S+  A I
Sbjct:    17 VPLIQPDLRREEAIQQVADALQYLQNISGDIFSRISQRVELSRRQLQAIGERVSLAQAKI 76

Query:   108 EKLKNIQKSVTIVSKSKYPYP-----YNGNYSVHIQHE-HVTPMYKCPLLLYDKTEINTR 161
             EK+K  +K++ + S +KYP P     YN  ++  +       P Y+   +      ++ R
Sbjct:    77 EKIKGSKKAIKVFSSAKYPAPEHLQEYNSVFTGALDPGLQRRPRYR---IQSKHRPLDER 133

Query:   162 DIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHP 221
              +  KLK++ V  +       E   EE LG LP+ I S+ S +LFNT++N+Y+KY+ + P
Sbjct:   134 ALQEKLKYFPVCVSTKSEPEDE--AEEGLGGLPSNISSISSLLLFNTTENLYKKYVFLDP 191

Query:   222 GQVIARKPITKKHDH--TEQVKMEDAPKSLISK 252
                +A   +TK H    TE+ K+ DAP S ISK
Sbjct:   192 ---LAGA-VTKTHTMLGTEEEKLFDAPLS-ISK 219

GO:0003779 "actin binding" evidence=IEA

GO:0005769 "early endosome" evidence=ISO;ISS

GO:0016197 "endosomal transport" evidence=ISO;ISS

GO:0031901 "early endosome membrane" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=ISO;ISS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISS

GO:0043014 "alpha-tubulin binding" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISO;ISS

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0071203 "WASH complex" evidence=ISS

UNIPROTKB|F1LSU9 Wash2 "Protein Wash2" [Rattus norvegicus (taxid:10116)]

 Score = 249 (92.7 bits), Expect = 3.0e-19, P = 3.0e-19
 Identities = 70/213 (32%), Positives = 114/213 (53%)

Query:    48 IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
             + LIQ DL+  + I Q+A++L  L     ++F    + +  +R+ L AI +R S+  A I
Sbjct:    17 VPLIQPDLRREEAIQQVADALQYLQNISGDIFSRISQRVELSRRQLQAIGERVSLAQAKI 76

Query:   108 EKLKNIQKSVTIVSKSKYPYP-----YNGNYSVHIQHE-HVTPMYKCPLLLYDKTEINTR 161
             EK+K  +K++ + S +KYP P     YN  ++  +       P Y+   +      ++ R
Sbjct:    77 EKIKGSKKAIKVFSSAKYPAPEHLQEYNSVFTGALDPGLQRRPRYR---IQSKHRPLDER 133

Query:   162 DIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHP 221
              +  KLK++ V  +       E   EE LG LP+ I S+ S +LFNT++N+Y+KY+ + P
Sbjct:   134 ALQEKLKYFPVCVSTKSEPEDE--AEEGLGGLPSNISSISSLLLFNTTENLYKKYVFLDP 191

Query:   222 GQVIARKPITKKHDH--TEQVKMEDAPKSLISK 252
                +A   +TK H    TE+ K+ DAP S ISK
Sbjct:   192 ---LAGA-VTKTHTMLGTEEEKLFDAPLS-ISK 219

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|F1LR35 Wash2 "Protein Wash2" [Rattus norvegicus (taxid:10116)]

 Score = 249 (92.7 bits), Expect = 3.6e-19, P = 3.6e-19
 Identities = 70/213 (32%), Positives = 114/213 (53%)

Query:    48 IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
             + LIQ DL+  + I Q+A++L  L     ++F    + +  +R+ L AI +R S+  A I
Sbjct:    47 VPLIQPDLRREEAIQQVADALQYLQNISGDIFSRISQRVELSRRQLQAIGERVSLAQAKI 106

Query:   108 EKLKNIQKSVTIVSKSKYPYP-----YNGNYSVHIQHE-HVTPMYKCPLLLYDKTEINTR 161
             EK+K  +K++ + S +KYP P     YN  ++  +       P Y+   +      ++ R
Sbjct:   107 EKIKGSKKAIKVFSSAKYPAPEHLQEYNSVFTGALDPGLQRRPRYR---IQSKHRPLDER 163

Query:   162 DIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHP 221
              +  KLK++ V  +       E   EE LG LP+ I S+ S +LFNT++N+Y+KY+ + P
Sbjct:   164 ALQEKLKYFPVCVSTKSEPEDE--AEEGLGGLPSNISSISSLLLFNTTENLYKKYVFLDP 221

Query:   222 GQVIARKPITKKHDH--TEQVKMEDAPKSLISK 252
                +A   +TK H    TE+ K+ DAP S ISK
Sbjct:   222 ---LAGA-VTKTHTMLGTEEEKLFDAPLS-ISK 249

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|A7Z063 WASH1 "WAS protein family homolog 1" [Bos taurus (taxid:9913)]

 Score = 241 (89.9 bits), Expect = 3.2e-18, P = 3.2e-18
 Identities = 66/205 (32%), Positives = 104/205 (50%)

Query:    48 IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
             + LIQ DL+  + I Q+A++L  L +   ++F    + +  +R  L AI +R S+  A I
Sbjct:    17 VPLIQPDLRREEAIQQVADALQYLQKVSGDIFSRISQRVELSRSQLQAIGERVSLAQAKI 76

Query:   108 EKLKNIQKSVTIVSKSKYPYPYN-GNYSVHIQHEHVTPMYKCPL-LLYDKTE-INTRDID 164
             EK+K  +K++ + S +KYP P     Y           + + P   +  K   ++ R + 
Sbjct:    77 EKIKGSKKAIKVFSSAKYPAPERLQEYGSIFMGAQDPGLQRRPRHRIQSKHRPLDERALQ 136

Query:   165 NKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHPGQV 224
              KLKF+ V  N       E   EE LG LP+ I SV S +LFNT++N+Y+KY+ + P   
Sbjct:   137 EKLKFFPVCVNTKPEPEDE--AEEGLGGLPSNISSVSSLLLFNTTENLYKKYVFLDPLAG 194

Query:   225 IARKPITKKHDHTEQVKMEDAPKSL 249
                K        TE+ K+ DAP S+
Sbjct:   195 AVTKTHVMLGAETEE-KLFDAPLSI 218

GO:0043014 "alpha-tubulin binding" evidence=ISS

GO:0005769 "early endosome" evidence=ISS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISS

GO:0071203 "WASH complex" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=ISS

GO:0016197 "endosomal transport" evidence=ISS

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|F1SK83 WASH1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 235 (87.8 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 67/208 (32%), Positives = 107/208 (51%)

Query:    48 IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
             + LIQ DL+  + I Q+A++L  L +   ++F    + +  +R+ L AI +R S+  A I
Sbjct:    17 VPLIQPDLRREEAIQQVADALQYLQKVSGDIFSRISQRVELSRRQLQAIGERVSLAQAKI 76

Query:   108 EKLKNIQKSVTIVSKSKYPYPYN-GNYSVHIQHEHVTPMYKCPL-LLYDKTE-INTRDID 164
             EK+K  +K++ + S +KYP P     Y           + + P   +  K   ++ R + 
Sbjct:    77 EKIKGSKKAIKVFSSAKYPAPERLREYGSIFTGAQDPGLQRRPRHRIQSKHRPLDERALQ 136

Query:   165 NKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHPGQV 224
              KLK++ V  +       E   EE LG LP+ I SV S +LFNT++N+Y+KY+ + P   
Sbjct:   137 EKLKYFPVCVSTKPEPEDE--AEEGLGGLPSNISSVSSLLLFNTTENLYKKYVFLDPLAG 194

Query:   225 IARKPITKKHDHTEQVKMEDAPKSLISK 252
                K        TE+ K+ DAP S ISK
Sbjct:   195 AVTKTHVMLGAETEE-KLFDAPLS-ISK 220

GO:0055037 "recycling endosome" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|E2QXP1 WASH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 231 (86.4 bits), Expect = 5.5e-17, P = 5.5e-17
 Identities = 67/208 (32%), Positives = 106/208 (50%)

Query:    48 IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
             + LIQ DL+  + I Q+A++L  L +   ++F    + +  +R+ L AI +R S+  A I
Sbjct:    17 VPLIQPDLRREEAIQQMADALQYLQKVSGDIFSRISQRVELSRKQLQAIGERVSLAQAKI 76

Query:   108 EKLKNIQKSVTIVSKSKYPYPYN-GNYSVHIQHEHVTPMYKCPLL-LYDKTE-INTRDID 164
             EK+K  +K++ + S +KYP P     Y           + + P   +  K   ++   + 
Sbjct:    77 EKIKGSKKAIKVFSSAKYPAPERLQEYDSIFTGAQDPGLQRRPRYRIQSKHRPLDEWALQ 136

Query:   165 NKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHPGQV 224
              KLK++ V  N       E   EE LG LP+ I SV S +LFNT++N+Y+KY+ + P   
Sbjct:   137 EKLKYFPVCVNTKPEPEDE--AEEGLGGLPSNISSVSSLLLFNTTENLYKKYVFLDPLAG 194

Query:   225 IARKPITKKHDHTEQVKMEDAPKSLISK 252
                K        TE+ K+ DAP S ISK
Sbjct:   195 AVTKTHVMLGAETEE-KLFDAPLS-ISK 220

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|Q28DN4 wash1 "WAS protein family homolog 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 225 (84.3 bits), Expect = 3.0e-16, P = 3.0e-16
 Identities = 68/221 (30%), Positives = 107/221 (48%)

Query:    37 QSNMIKITNIEIALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAI 96
             Q+  ++     + LI  DL+  + I QI ++L  L     ++F    + +   R  L  I
Sbjct:     3 QNRSMESQAYSLPLILPDLRREEAIHQITDTLQHLQTVSNDIFSRILQRVETNRGQLQRI 62

Query:    97 EKRSSVVCANIEKLKNIQKSVTIVSKSKYPYPYN-GNYS-VHIQHEHVTPMYKCPLLLYD 154
               R S+  A IE+LK I+K++ + S +KYP P +   YS V    E      K    +  
Sbjct:    63 NGRLSLAQAKIERLKGIKKAIKVFSSAKYPAPEHLQEYSSVFAGAEDGWLAKKLRHKIQS 122

Query:   155 KTE-INTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVY 213
             K   ++ + +  KLK++ V  N       E   EE LG LP  I SV S +LFNT++N+Y
Sbjct:   123 KHRPLDEQAVQEKLKYFPVCVNT--RGQDEESAEEGLGSLPRNISSVSSLLLFNTTENLY 180

Query:   214 EKYIIVHP--GQVIARKPITKKHDHTEQVKMEDAPKSLISK 252
             +KY+ + P  G V    P  +  D   + K+ DAP S+  +
Sbjct:   181 KKYVFLDPLAGVVTRTNPALEGED---EEKLFDAPLSITKR 218

GO:0005769 "early endosome" evidence=ISS

GO:0016197 "endosomal transport" evidence=ISS

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=ISS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISS

GO:0043014 "alpha-tubulin binding" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

GO:0071203 "WASH complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P91303	VATG_CAEEL	No assigned EC number	0.6792	0.1345	0.4206	yes	N/A
Q9XZH6	VATG_DROME	No assigned EC number	0.8181	0.1395	0.4700	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	394
pfam11945	297	pfam11945, WASH_WAHD, WAHD domain of WASH complex	7e-29
pfam03179	105	pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subu	7e-25
TIGR01147	113	TIGR01147, V_ATP_synt_G, vacuolar ATP synthase, su	9e-21
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	7e-05
PRK02292	188	PRK02292, PRK02292, V-type ATP synthase subunit E;	0.002
PRK13428	445	PRK13428, PRK13428, F0F1 ATP synthase subunit delt	0.003
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	0.003

>gnl|CDD|204791 pfam11945, WASH_WAHD, WAHD domain of WASH complex

 Score =  113 bits (285), Expect = 7e-29
 Identities = 64/213 (30%), Positives = 105/213 (49%), Gaps = 12/213 (5%)

Query: 48  IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
           + +IQ DL+  +TI QIA++L  L++   +VFD   + +   R  L AI  R  +  A I
Sbjct: 7   VPIIQPDLRREETIRQIADALQYLEKVSNDVFDRISQRVEDNRARLQAINGRVKLAQAKI 66

Query: 108 EKLKNIQKSVTIVSKSKYPYP-YNGNY-SVHIQHEHVTPMYKCPLLLYDKTE-INTRDID 164
            K+K  +K++ + S +KYP       Y S+         + +    +  K   ++ + + 
Sbjct: 67  RKIKGSKKAIKVFSSAKYPAADVLQEYESIFTGATDGIELKRPHYRIQSKHPPLDEKSLQ 126

Query: 165 NKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHPGQV 224
            KLK+Y V  N   H+      EE LG LP  + SV S +LFNT++N+Y+KY+ + P   
Sbjct: 127 EKLKYYPVCVNTKKHRIFSDPAEEGLGSLPRNLSSVSSLLLFNTTENLYKKYVTLDP--- 183

Query: 225 IARKPITKKHDHT----EQVKMEDAPKSLISKG 253
                +  K  H     E+ K+ DAP S+  + 
Sbjct: 184 --LAGVVTKTRHALEGEEEEKLFDAPSSITKRE 214

This domain forms part of the WASH-complex of domains and proteins that activates the Arp2/3 complex, see pfam04062. The Arp2/3 complex regulates endocytosis, sorting, and trafficking within the cell. The WAHD domain attaches to the FAM21 proteins via its N-terminal residues and to the microtubules via its C-terminal residues. Length = 297

>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit

 Score = 97.3 bits (243), Expect = 7e-25
 Identities = 38/57 (66%), Positives = 49/57 (85%)

Query: 321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKVS 377
           GIQQLL AEK AAE V EA+KR+A+RLKQAKEEA+++IE+YR +RE  F+E+EA+ S
Sbjct: 5   GIQQLLQAEKEAAEIVNEARKRRAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAEHS 61

This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation. Length = 105

>gnl|CDD|130217 TIGR01147, V_ATP_synt_G, vacuolar ATP synthase, subunit G

 Score = 86.4 bits (214), Expect = 9e-21
 Identities = 42/55 (76%), Positives = 52/55 (94%)

Query: 321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 375
           GIQQLL AEKRAAEKV+EA+KRK +RLKQAKEEAQ+++EKY+Q+REK F+E+EAK
Sbjct: 7   GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAK 61

This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system [Energy metabolism, ATP-proton motive force interconversion]. Length = 113

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 44.4 bits (106), Expect = 7e-05
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 319 SLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKVSH 378
            +   ++  AE+ A   + EAKK      K+A  EA+E+I K R E EK  RE   ++  
Sbjct: 27  KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQK 86

Length = 520

>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQER 365
            A++ A E +AEA+      L+  + EA+ +IE+ R++ 
Sbjct: 24  EADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQE 62

Length = 188

>gnl|CDD|184048 PRK13428, PRK13428, F0F1 ATP synthase subunit delta; Provisional

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 314 RPPVVSL------GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREK 367
            PPV  L       ++Q LA    AA+++AEA +   + ++ AK EA   +E+ R++ E+
Sbjct: 23  VPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAER 82

Query: 368 IFREYEAK 375
           I  +  A+
Sbjct: 83  IAEQLRAQ 90

Length = 445

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKVS 377
           ++L +AE+ A   + EAKK      K+A  EA+E++ K R E E+  +E   ++ 
Sbjct: 25  KKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQ 79

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	394
PF11945	297	WASH_WAHD: WAHD domain of WASH complex; InterPro:	100.0
KOG1772|consensus	108		99.92
TIGR01147	113	V_ATP_synt_G vacuolar ATP synthase, subunit G. Thi	99.91
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	99.68
PRK01005	207	V-type ATP synthase subunit E; Provisional	96.18
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	94.76
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	93.61
PRK09173	159	F0F1 ATP synthase subunit B; Validated	92.83
PRK00106	535	hypothetical protein; Provisional	92.6
PRK07352	174	F0F1 ATP synthase subunit B; Validated	91.92
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	91.61
PRK06568	154	F0F1 ATP synthase subunit B; Validated	91.54
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	91.41
KOG1830|consensus	518		91.25
PRK06231	205	F0F1 ATP synthase subunit B; Validated	91.03
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	90.64
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	90.61
PRK01558	198	V-type ATP synthase subunit E; Provisional	90.39
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	90.3
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	90.09
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	90.02
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	89.9
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	89.83
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	89.79
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	89.77
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	89.77
PRK02292	188	V-type ATP synthase subunit E; Provisional	89.69
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	89.64
PRK08475	167	F0F1 ATP synthase subunit B; Validated	89.46
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	89.24
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	89.18
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	88.54
PRK08404	103	V-type ATP synthase subunit H; Validated	88.4
CHL00019	184	atpF ATP synthase CF0 B subunit	88.1
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	87.72
PRK12704	520	phosphodiesterase; Provisional	87.49
PRK01194	185	V-type ATP synthase subunit E; Provisional	87.21
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	87.14
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	86.52
PRK05759	156	F0F1 ATP synthase subunit B; Validated	86.47
PRK08404	103	V-type ATP synthase subunit H; Validated	86.35
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	85.82
PRK03963	198	V-type ATP synthase subunit E; Provisional	85.72
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	85.11
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	85.0
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	84.15
PRK01005	207	V-type ATP synthase subunit E; Provisional	83.99
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	83.9
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	83.82
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	82.74
PRK00106	535	hypothetical protein; Provisional	81.26

>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex

Probab=100.00  E-value=7.2e-70  Score=532.35  Aligned_cols=231  Identities=33%  Similarity=0.511  Sum_probs=212.4

Q ss_pred             cceeEEEeeeCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEee
Q psy2197          42 KITNIEIALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNIQKSVTIVS  121 (394)
Q Consensus        42 ~~~~Y~VplI~~DLr~EEtI~qi~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~gskKAItVfS  121 (394)
                      ++|+|+||||++||||||||+||+++|++|++|++|||+||++||+++|+||++|++||++|||||++|+||+|||||||
T Consensus         1 ~~q~Y~vplI~~dLr~eEti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~kAi~vfs   80 (297)
T PF11945_consen    1 EMQVYSVPLIPPDLRREETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQGSKKAITVFS   80 (297)
T ss_pred             CCceeEecccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccEEEeC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC-CCcccccccccCCC-CccCccccccccc--ccccccccccceeeeeccccccccchhhhcccCCCCCCCC
Q psy2197         122 KSKYPYPYN-GNYSVHIQHEHVTP-MYKCPLLLYDKTE--INTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPI  197 (394)
Q Consensus       122 sAKYPa~~~-~~y~~sIF~~~~~~-~~~~~~~~i~~k~--~d~~~lqekl~Fy~Vk~~~~~~~~~~~~~~eGLG~LP~~I  197 (394)
                      |||||+++. ++|+ |||++..++ ...+.++++..++  .+++.++||++|||||.....+....+..++|||+||++|
T Consensus        81 ~akyP~~~~~~~y~-siF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ekl~f~~v~~~~~~~~~~~~~~~eGLG~lP~~i  159 (297)
T PF11945_consen   81 PAKYPAPDRLQDYS-SIFTGATDPIPQKRKRYKIRSKHRPIDEKALQEKLQFFHVKVNEKSERILVDQAEEGLGSLPRNI  159 (297)
T ss_pred             cccCCCcccccccc-ccccCcCcccccccccccccccCCCccchhhhhhcceeEecccccccCcccccccccccCCCCCC
Confidence            999999999 9999 999985553 3345566666654  6789999999999999988665533478899999999999


Q ss_pred             CCcchhhhccCCcccchhhhccCCccccccCccccccc---ccccccccCCCchh-hhcccccccCCCeeeeeCCCCccc
Q psy2197         198 DSVMSSILFNTSDNVYEKYIIVHPGQVIARKPITKKHD---HTEQVKMEDAPKSL-ISKGILRTDFSKLAVVLKLGAKTN  273 (394)
Q Consensus       198 ~SVsSLLLFNT~ENpYkkY~~lDP~q~ll~g~~~k~r~---~e~e~~L~dAP~SI-~re~l~r~~~~~y~YvP~lg~Vpn  273 (394)
                      +||||||||||+||||+||+++||    |+|++++++.   .+++++|++||+|| +|++++++.+++|||+|+||+||+
T Consensus       160 ~SVssLLLFNT~eNpYkky~~lDp----l~g~~~kt~~~~~~~~~~~l~~AP~SI~~~~~l~~~~~~~y~Y~P~lg~vPe  235 (297)
T PF11945_consen  160 SSVSSLLLFNTNENPYKKYVFLDP----LRGAVTKTRKELEGEKEEKLADAPSSISKRDQLERQPADDYFYVPDLGEVPE  235 (297)
T ss_pred             cchhHHHHhcCCcchhhcccccCc----cccccccccccccccccccccCCChhhhcccccccccCCceeecCCcccccc
Confidence            999999999999999999999999    9999998875   34689999999999 899999999999999999999999


Q ss_pred             cchh
Q psy2197         274 KSII  277 (394)
Q Consensus       274 ~s~~  277 (394)
                      ++++
T Consensus       236 iDvP  239 (297)
T PF11945_consen  236 IDVP  239 (297)
T ss_pred             CCCC
Confidence            9998

The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.

>KOG1772|consensus

Probab=99.92  E-value=2.9e-25  Score=187.76  Aligned_cols=76  Identities=55%  Similarity=0.698  Sum_probs=72.9

Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHhhc
Q psy2197         315 PPVVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV--SHCNIVLIIKAAAN  390 (394)
Q Consensus       315 ~a~~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~--s~~~~~~e~e~~t~  390 (394)
                      |+|+++||||||+|||+|++||++||++|.+||||||+||++||++||.++|+||+.+++.+  +.|+++.++|++|.
T Consensus         1 M~Sq~qGIqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~   78 (108)
T KOG1772|consen    1 MASQSQGIQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLEQETD   78 (108)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence            56799999999999999999999999999999999999999999999999999999999999  77999999999985

>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G

Probab=99.91  E-value=4.3e-24  Score=183.79  Aligned_cols=76  Identities=57%  Similarity=0.718  Sum_probs=70.3

Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHhhc
Q psy2197         315 PPVVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV--SHCNIVLIIKAAAN  390 (394)
Q Consensus       315 ~a~~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~--s~~~~~~e~e~~t~  390 (394)
                      |+||++|||+||+||++|++||++||++|++||||||+||++||++||+++|+||++|++++  +.+....+++++|+
T Consensus         1 M~sq~~GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~~~ea~~~g~~~~~~~~l~~et~   78 (113)
T TIGR01147         1 MASQTQGIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAEAETQ   78 (113)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            34557799999999999999999999999999999999999999999999999999999999  44778899999885

This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=99.68  E-value=4.3e-17  Score=137.15  Aligned_cols=74  Identities=46%  Similarity=0.561  Sum_probs=60.5

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHhhc
Q psy2197         317 VVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV--SHCNIVLIIKAAAN  390 (394)
Q Consensus       317 ~~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~--s~~~~~~e~e~~t~  390 (394)
                      |+|+|||+||+||++|.+||.+||+.|.+|||+||+||+.||+.||.++|++|+.++..+  +.+....+++++|.
T Consensus         1 ~~~~~Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~   76 (105)
T PF03179_consen    1 SQSDGIQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELEKETE   76 (105)
T ss_dssp             -----SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence            679999999999999999999999999999999999999999999999999999998888  45788888888774

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=96.18  E-value=0.037  Score=52.79  Aligned_cols=53  Identities=26%  Similarity=0.347  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2197         324 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV  376 (394)
Q Consensus       324 ~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~  376 (394)
                      .|-+|+++|.+|+.+|++...+-+.+|+.||++.+++.+.+-|.+.++.++..
T Consensus        21 iL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a   73 (207)
T PRK01005         21 TLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGESAL   73 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45578999999999999999999999999999999999999999988877654

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=94.76  E-value=0.27  Score=42.85  Aligned_cols=58  Identities=34%  Similarity=0.370  Sum_probs=51.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         317 VVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA  374 (394)
Q Consensus       317 ~~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~  374 (394)
                      ..+.-|-.+-.||..|.+.|.+|+..+-+++++|+.+|...|++.-..-++.++++..
T Consensus         4 ~~~Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~   61 (108)
T COG2811           4 DDSEVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILE   61 (108)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467888999999999999999999999999999999999999988888887777743

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=93.61  E-value=0.42  Score=44.98  Aligned_cols=57  Identities=32%  Similarity=0.402  Sum_probs=50.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2197         320 LGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV  376 (394)
Q Consensus       320 ~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~  376 (394)
                      .+=..|..|+++|..|+.+|+..=....++|..+|+.|+..+|.+-|.||+....+.
T Consensus        24 ~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el   80 (201)
T PF12072_consen   24 INRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKEL   80 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678899999999999999888888999999999999999999999999886654

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=92.83  E-value=0.74  Score=41.35  Aligned_cols=51  Identities=24%  Similarity=0.230  Sum_probs=41.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFRE  371 (394)
Q Consensus       321 GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~  371 (394)
                      -=.+|-.|+++|++|+.+|+..-.+.+.+|+.+|+++++.....-+.+...
T Consensus        59 ~e~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~~~I~~  109 (159)
T PRK09173         59 YQRKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKIAQ  109 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346788899999999999999988899999999999988866655444443

>PRK00106 hypothetical protein; Provisional

Probab=92.60  E-value=0.51  Score=51.05  Aligned_cols=51  Identities=24%  Similarity=0.190  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFRE  371 (394)
Q Consensus       321 GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~  371 (394)
                      .=-+||.|+++|.+|+.+|++.-.+-+++|+.+|+.++.+++.+-|+|+.+
T Consensus        33 ~~~~~~~A~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~   83 (535)
T PRK00106         33 AELTLLNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARK   83 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677777777777777766544444555555544444444444444433

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=91.92  E-value=1.1  Score=41.02  Aligned_cols=52  Identities=23%  Similarity=0.243  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY  372 (394)
Q Consensus       321 GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~  372 (394)
                      -=++|-+|+++|++|+.+|+..-.+...++.++|++|++..+.+.+.+....
T Consensus        76 ~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e  127 (174)
T PRK07352         76 AQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAE  127 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778888899999888887777666666666666666666555555443

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=91.61  E-value=1.4  Score=36.03  Aligned_cols=46  Identities=33%  Similarity=0.460  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         325 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR  370 (394)
Q Consensus       325 LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~  370 (394)
                      +=.||.++..++.+|+......|.+|+.+|...+++-..+-+.+-+
T Consensus         4 ik~ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~   49 (85)
T TIGR02926         4 IKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGE   49 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555555554444444333

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=91.54  E-value=1.4  Score=40.36  Aligned_cols=48  Identities=13%  Similarity=0.253  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR  370 (394)
Q Consensus       323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~  370 (394)
                      .+|-+|+++|++|+.+|+....+-..+|+++|..|++..+.+-.++..
T Consensus        63 ~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie  110 (154)
T PRK06568         63 AQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQ  110 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677788888888888887777777777777777766665444333

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=91.41  E-value=1.4  Score=39.85  Aligned_cols=50  Identities=20%  Similarity=0.177  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         323 QQLLAAEKRAAEKVAEAKKRKARRLKQ----AKEEAQEDIEKYRQEREKIFREY  372 (394)
Q Consensus       323 q~LL~AEkeA~~iV~~Ar~~k~~rLKq----Ak~eA~~EI~~yr~~kE~ef~~~  372 (394)
                      +.|-.|+++|++|+.+|+....+...+    |+.+|++.+++-+.+=|.|.++.
T Consensus        67 ~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a  120 (164)
T PRK14471         67 RLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAA  120 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356678888888888888766655544    44444444444444444444333

>KOG1830|consensus

Probab=91.25  E-value=0.49  Score=49.82  Aligned_cols=70  Identities=17%  Similarity=0.333  Sum_probs=61.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------ccCceE--------EE
Q psy2197          59 DTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLK-----------NIQKSV--------TI  119 (394)
Q Consensus        59 EtI~qi~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~-----------gskKAI--------tV  119 (394)
                      -|+.-||.-|.-|-+-++|||+-|-+-+...-.|...|++||.++.-||.+|-           +++||.        +|
T Consensus        32 ~TLaniIRQLsSLSKhAEdIFGELf~da~~f~~R~NSLQ~RIDRL~vkVtqLDs~~eevsLqdinmrKAFkSStvqDQqi  111 (518)
T KOG1830|consen   32 ITLANIIRQLSSLSKHAEDIFGELFNDANNFNHRANSLQERIDRLAVKVTQLDSTVEEVSLQDINMRKAFKSSTVQDQQI  111 (518)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhccCCcccccccchhHHHhhhhhhhhhhhhh
Confidence            37889999999999999999999999999999999999999999999999985           366775        37


Q ss_pred             eeCCCCCCC
Q psy2197         120 VSKSKYPYP  128 (394)
Q Consensus       120 fSsAKYPa~  128 (394)
                      |+.+-.|.+
T Consensus       112 fdR~tlP~p  120 (518)
T KOG1830|consen  112 FDRNTLPTP  120 (518)
T ss_pred             hccccCCch
Confidence            888877764

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=91.03  E-value=1.8  Score=41.08  Aligned_cols=53  Identities=30%  Similarity=0.170  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         321 GIQQLLAAEKRAAEKVAEAKKRKA----RRLKQAKEEAQEDIEKYRQEREKIFREYE  373 (394)
Q Consensus       321 GIq~LL~AEkeA~~iV~~Ar~~k~----~rLKqAk~eA~~EI~~yr~~kE~ef~~~~  373 (394)
                      .=.+|-+|+.+|++|+.+|+..-.    .-+++|+.+|++.+++-+.+-|.|-++..
T Consensus       105 ~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~  161 (205)
T PRK06231        105 AKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELK  161 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677788888888888877544    55777777777777777777776666653

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=90.64  E-value=2.3  Score=38.34  Aligned_cols=52  Identities=31%  Similarity=0.313  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         322 IQQLLAAEKRAAEKVAEAKKR----KARRLKQAKEEAQEDIEKYRQEREKIFREYE  373 (394)
Q Consensus       322 Iq~LL~AEkeA~~iV~~Ar~~----k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~  373 (394)
                      =+.|-+|.++|+.|+.+|+..    +..-+.+|+.||++.++.-+.+=+.|-++..
T Consensus        66 e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~  121 (164)
T PRK14473         66 EAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRML  121 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677778888888887763    3345666666666666666655555544443

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=90.61  E-value=1.7  Score=39.70  Aligned_cols=51  Identities=24%  Similarity=0.249  Sum_probs=30.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         321 GIQQLLAAEKRAAEKVAEAKKRKARR----LKQAKEEAQEDIEKYRQEREKIFRE  371 (394)
Q Consensus       321 GIq~LL~AEkeA~~iV~~Ar~~k~~r----LKqAk~eA~~EI~~yr~~kE~ef~~  371 (394)
                      -=++|-.|+++|++|+.+|+..-.+-    +.+|++||++-++.-+.+-+.|.++
T Consensus        75 ~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~  129 (175)
T PRK14472         75 NRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRR  129 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44667788888888888887755544    4444444444444444444444333

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=90.39  E-value=1.4  Score=41.46  Aligned_cols=40  Identities=35%  Similarity=0.362  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQERE  366 (394)
Q Consensus       327 ~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE  366 (394)
                      +|+.+|..|+++|++.-.+=+.+|+.+|++.++.-+.+-+
T Consensus        19 eA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~   58 (198)
T PRK01558         19 EAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEAN   58 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999888899999999988877554444

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=90.30  E-value=1.9  Score=40.05  Aligned_cols=50  Identities=28%  Similarity=0.258  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         324 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE  373 (394)
Q Consensus       324 ~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~  373 (394)
                      .|-.|.++|++|+.+|++.-.+...+++.+|+.|++...++-+++.....
T Consensus        91 ~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k  140 (181)
T PRK13454         91 ALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIR  140 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35557777777777777766666666666666666666666555555443

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=90.09  E-value=2.1  Score=39.34  Aligned_cols=56  Identities=18%  Similarity=0.131  Sum_probs=38.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         320 LGIQQLLAAEKRAAEKVAEAKKRKA----RRLKQAKEEAQEDIEKYRQEREKIFREYEAK  375 (394)
Q Consensus       320 ~GIq~LL~AEkeA~~iV~~Ar~~k~----~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~  375 (394)
                      .-=++|-+|+++|++|+.+|+..-.    .-+.+|+++|++.+++-+.+-|.|.++...+
T Consensus        74 e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~  133 (173)
T PRK13453         74 ENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIAD  133 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457788899999999998887554    4566666666666666666666665555433

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=90.02  E-value=2.1  Score=38.95  Aligned_cols=47  Identities=30%  Similarity=0.320  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIF  369 (394)
Q Consensus       323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef  369 (394)
                      ++|-.|+.+|++|+.+|+....+...++.++|++|.+....+-+.+-
T Consensus        69 ~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I  115 (167)
T PRK14475         69 AEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKI  115 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666777777777666655555555555555555444444433

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=89.90  E-value=1.8  Score=39.26  Aligned_cols=46  Identities=33%  Similarity=0.445  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY  372 (394)
Q Consensus       327 ~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~  372 (394)
                      +|+.+|.+|+.+|++.-.+-+.+|+.+|+.+++.+....+++.+..
T Consensus         5 eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   50 (198)
T PF01991_consen    5 EAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQE   50 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999988888777766666544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=89.83  E-value=1.9  Score=41.72  Aligned_cols=52  Identities=21%  Similarity=0.251  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         322 IQQLLAAEKRAAEKVAEAKK----RKARRLKQAKEEAQEDIEKYRQEREKIFREYE  373 (394)
Q Consensus       322 Iq~LL~AEkeA~~iV~~Ar~----~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~  373 (394)
                      =++|-+|+++|++|+.+|++    .+..-+.+|+.||++.++.-+.+-|.|-++..
T Consensus        63 e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~  118 (246)
T TIGR03321        63 EEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALS  118 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677889999999996665    45566888888888888877777777766654

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=89.79  E-value=2  Score=40.37  Aligned_cols=50  Identities=30%  Similarity=0.406  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         324 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE  373 (394)
Q Consensus       324 ~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~  373 (394)
                      ..|++.++|.+|+++||..-.+=|.+|+++|+.-++.-+.+-+++|....
T Consensus        24 e~L~~~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~q~a   73 (191)
T PF06188_consen   24 EQLAAQQQAREILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFWQQA   73 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999988888999999999999876667777776554

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=89.77  E-value=1.9  Score=42.15  Aligned_cols=56  Identities=18%  Similarity=0.219  Sum_probs=41.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         320 LGIQQLLAAEKRAAEKVAEAKKR----KARRLKQAKEEAQEDIEKYRQEREKIFREYEAK  375 (394)
Q Consensus       320 ~GIq~LL~AEkeA~~iV~~Ar~~----k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~  375 (394)
                      ..-++|-.|+++|++|+.+|++.    |.+-+.+|++||++.++..+.+-|.|-++...+
T Consensus        61 e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~  120 (250)
T PRK14474         61 RYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKA  120 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677888999999999988874    445577888888888877777766666655443

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=89.77  E-value=2.5  Score=37.20  Aligned_cols=40  Identities=38%  Similarity=0.400  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         322 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKY  361 (394)
Q Consensus       322 Iq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~y  361 (394)
                      =+.|-+|..+|++|+.+|+..-.+...++..+|+.|++..
T Consensus        53 ~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~   92 (147)
T TIGR01144        53 QVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKI   92 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778888888887777755544444444444443333

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=89.69  E-value=1.8  Score=39.87  Aligned_cols=49  Identities=27%  Similarity=0.338  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK  375 (394)
Q Consensus       327 ~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~  375 (394)
                      +|+++|.+|..+|++....-+.+|+.+|++..+++..+-+++.......
T Consensus        13 ~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r   61 (188)
T PRK02292         13 EARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQ   61 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999888888888776543

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=89.64  E-value=2.5  Score=38.00  Aligned_cols=49  Identities=27%  Similarity=0.272  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         322 IQQLLAAEKRAAEKVAEAKKRKARR----LKQAKEEAQEDIEKYRQEREKIFR  370 (394)
Q Consensus       322 Iq~LL~AEkeA~~iV~~Ar~~k~~r----LKqAk~eA~~EI~~yr~~kE~ef~  370 (394)
                      =++|-+|+++|+.|+.+|+..-.+.    +.+|+.||++.+++-+.+-+.|-.
T Consensus        63 ~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~  115 (159)
T PRK13461         63 ERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKE  115 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888889888877754443    555555555555554444444333

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=89.46  E-value=3  Score=38.16  Aligned_cols=19  Identities=37%  Similarity=0.375  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy2197         323 QQLLAAEKRAAEKVAEAKK  341 (394)
Q Consensus       323 q~LL~AEkeA~~iV~~Ar~  341 (394)
                      ++|-+|+++|.+|+.+|++
T Consensus        81 ~~L~~Ar~eA~~Ii~~A~~   99 (167)
T PRK08475         81 KKLEEAKEKAELIVETAKK   99 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555554

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=89.24  E-value=2.7  Score=37.83  Aligned_cols=53  Identities=21%  Similarity=0.164  Sum_probs=31.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         320 LGIQQLLAAEKRAAEKVAEAKKRKAR----RLKQAKEEAQEDIEKYRQEREKIFREY  372 (394)
Q Consensus       320 ~GIq~LL~AEkeA~~iV~~Ar~~k~~----rLKqAk~eA~~EI~~yr~~kE~ef~~~  372 (394)
                      ..=+.|-+|.++|++|+++|+..-.+    .+.+|++||++.+++.+.+-+.|-++-
T Consensus        78 e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a  134 (156)
T CHL00118         78 QYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKA  134 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456777778888888777765443    345555555555555554444444433

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=89.18  E-value=2.7  Score=38.48  Aligned_cols=47  Identities=26%  Similarity=0.244  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         324 QLLAAEKRAAEKVAEAKKRKARR----LKQAKEEAQEDIEKYRQEREKIFR  370 (394)
Q Consensus       324 ~LL~AEkeA~~iV~~Ar~~k~~r----LKqAk~eA~~EI~~yr~~kE~ef~  370 (394)
                      +|-+|+++|++|+.+|+..-.+.    +.+|+.+|++.++.-+.+-|.|-+
T Consensus        76 ~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~  126 (173)
T PRK13460         76 RLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKG  126 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666777777777777654444    344444444444444433333333

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=88.54  E-value=3  Score=38.41  Aligned_cols=22  Identities=23%  Similarity=0.209  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy2197         324 QLLAAEKRAAEKVAEAKKRKAR  345 (394)
Q Consensus       324 ~LL~AEkeA~~iV~~Ar~~k~~  345 (394)
                      +|-.|+++|++|+.+|++.-.+
T Consensus        87 ~L~~A~~ea~~Ii~~A~~~a~~  108 (184)
T PRK13455         87 KQREVQEQADRIVAAAKDEAQA  108 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666665554443

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=88.40  E-value=4  Score=34.89  Aligned_cols=48  Identities=31%  Similarity=0.385  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         324 QLLAAEKRAAEKVAEAKKRKA----RRLKQAKEEAQEDIEKYRQEREKIFRE  371 (394)
Q Consensus       324 ~LL~AEkeA~~iV~~Ar~~k~----~rLKqAk~eA~~EI~~yr~~kE~ef~~  371 (394)
                      .|-.|..+|+.|+.+|+..-.    .-+.+|+.+|..-++..+.+-|.|-..
T Consensus        18 ~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~   69 (103)
T PRK08404         18 RIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKK   69 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555554332    225555555555555555544444433

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=88.10  E-value=3.4  Score=38.17  Aligned_cols=47  Identities=21%  Similarity=0.088  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         323 QQLLAAEKRAAEKVAEAKKRKARR----LKQAKEEAQEDIEKYRQEREKIF  369 (394)
Q Consensus       323 q~LL~AEkeA~~iV~~Ar~~k~~r----LKqAk~eA~~EI~~yr~~kE~ef  369 (394)
                      .+|-.|+++|++|+.+|++.-.+.    +.+|+.+|++.+++.+.+-|.|-
T Consensus        83 ~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek  133 (184)
T CHL00019         83 ARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQ  133 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777777777777654443    44444444444444444433333

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=87.72  E-value=3.4  Score=39.32  Aligned_cols=38  Identities=18%  Similarity=0.284  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEK  360 (394)
Q Consensus       323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~  360 (394)
                      ++|-+|.++|++|+.+||+.-.+...+++.+|+.|++.
T Consensus       112 ~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~  149 (204)
T PRK09174        112 QELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEK  149 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666667777777766665444433333333333333

>PRK12704 phosphodiesterase; Provisional

Probab=87.49  E-value=2.6  Score=45.41  Aligned_cols=52  Identities=38%  Similarity=0.394  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA  374 (394)
Q Consensus       323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~  374 (394)
                      +.+-+|+++|..|+.+|+..--...++++.+|+.|+.++|.+-|++|+..+.
T Consensus        31 ~~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~   82 (520)
T PRK12704         31 AKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRN   82 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556799999999999988766778999999999999999998888755443

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=87.21  E-value=3.5  Score=38.50  Aligned_cols=49  Identities=18%  Similarity=0.171  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK  375 (394)
Q Consensus       327 ~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~  375 (394)
                      +|+.+|..|+.+|++.-.+=++.|+.+|++..+.|..+.+++-......
T Consensus        13 ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~r   61 (185)
T PRK01194         13 SREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKS   61 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999988888777665433

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=87.14  E-value=6.1  Score=32.24  Aligned_cols=45  Identities=24%  Similarity=0.256  Sum_probs=33.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         319 SLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQ  363 (394)
Q Consensus       319 s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~  363 (394)
                      ...-..|-.|..+|.+|+.+|+....+-..+|..+|..|.+....
T Consensus         9 ~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~   53 (85)
T TIGR02926         9 EDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIK   53 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567889999999999999998877766666666555544433

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=86.52  E-value=3.1  Score=44.74  Aligned_cols=53  Identities=34%  Similarity=0.380  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK  375 (394)
Q Consensus       323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~  375 (394)
                      +.+-.|+++|..+..+|...-....++++.+|+.|+..+|.+-|++|+..+.+
T Consensus        25 ~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~r   77 (514)
T TIGR03319        25 KKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNE   77 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667999999999988876667779999999999999999988887555433

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=86.47  E-value=5.1  Score=35.50  Aligned_cols=47  Identities=30%  Similarity=0.196  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         323 QQLLAAEKRAAEKVAEAKK----RKARRLKQAKEEAQEDIEKYRQEREKIF  369 (394)
Q Consensus       323 q~LL~AEkeA~~iV~~Ar~----~k~~rLKqAk~eA~~EI~~yr~~kE~ef  369 (394)
                      ++|-+|+++|.+|+.+|+.    .+.+.+.+|+.||+.-++.-+.+-+.+.
T Consensus        63 ~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~  113 (156)
T PRK05759         63 AQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQER  113 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666554    3334455555555555554444444443

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=86.35  E-value=6.7  Score=33.50  Aligned_cols=53  Identities=28%  Similarity=0.375  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE  373 (394)
Q Consensus       321 GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~  373 (394)
                      -|-+.-+||.++.+++.+||.....-|.+|+.+|+++.++-..+-..+-....
T Consensus         4 ~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~il   56 (103)
T PRK08404          4 VIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLI   56 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677789999999999999999999999999999998887777666666554

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=85.82  E-value=6.2  Score=34.40  Aligned_cols=48  Identities=38%  Similarity=0.391  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         324 QLLAAEKRAAEKVAEAKKRKA----RRLKQAKEEAQEDIEKYRQEREKIFRE  371 (394)
Q Consensus       324 ~LL~AEkeA~~iV~~Ar~~k~----~rLKqAk~eA~~EI~~yr~~kE~ef~~  371 (394)
                      +|-+|.++|.+|+.+|+..-.    ..+.+|++||++.++.-+.+-+.|-++
T Consensus        65 ~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~  116 (140)
T PRK07353         65 QLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQKQA  116 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666666666555333    334444444444444444444444333

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=85.72  E-value=3.1  Score=38.38  Aligned_cols=39  Identities=21%  Similarity=0.229  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         326 LAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQE  364 (394)
Q Consensus       326 L~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~  364 (394)
                      =+|+++|.+|+++|++.-.+-+.+|+.+|+.|.+.+...
T Consensus        13 ~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~   51 (198)
T PRK03963         13 REAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRK   51 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            368899999999999998888888888888766655443

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=85.11  E-value=4.4  Score=42.76  Aligned_cols=45  Identities=22%  Similarity=0.322  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREK  367 (394)
Q Consensus       323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~  367 (394)
                      +.|-+|.++|++|+.+|++.-.+...++.++|+.|++..+.+-++
T Consensus        60 ~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~  104 (445)
T PRK13428         60 KAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGAR  104 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            447777888888888887765555444444444444444433333

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=85.00  E-value=6.5  Score=35.87  Aligned_cols=45  Identities=22%  Similarity=0.321  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         329 EKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE  373 (394)
Q Consensus       329 EkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~  373 (394)
                      ..++...+.+||.....-+.+|+.+|+.+.++.+.+-|++..+..
T Consensus        60 ~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~  104 (161)
T COG0711          60 LAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIK  104 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555565555555666666666666666666666665543

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=84.15  E-value=9.7  Score=34.71  Aligned_cols=51  Identities=29%  Similarity=0.297  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q psy2197         322 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIE----KYRQEREKIFREY  372 (394)
Q Consensus       322 Iq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~----~yr~~kE~ef~~~  372 (394)
                      =++|-+|..+|++||+.|++.-.+-..+++.+|+.|.+    ....+-+.+.++.
T Consensus        64 ~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a  118 (161)
T COG0711          64 EQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERA  118 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788899999999999988766555555555555544    4444444444443

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=83.99  E-value=4.9  Score=38.48  Aligned_cols=43  Identities=19%  Similarity=0.250  Sum_probs=34.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         320 LGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYR  362 (394)
Q Consensus       320 ~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr  362 (394)
                      ..=.-|-+|+++|..|+.+|++...+.+.+|+.+|+.|.....
T Consensus        28 eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~   70 (207)
T PRK01005         28 EAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGE   70 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677899999999999999988889999999888866433

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=83.90  E-value=8.9  Score=34.17  Aligned_cols=20  Identities=15%  Similarity=0.325  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy2197         347 LKQAKEEAQEDIEKYRQERE  366 (394)
Q Consensus       347 LKqAk~eA~~EI~~yr~~kE  366 (394)
                      +.+|+.+++.+++..+.+-+
T Consensus        94 ~~~A~~~~~~~~~~a~~~l~  113 (141)
T PRK08476         94 IEAKKAELESKYEAFAKQLA  113 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=83.82  E-value=5.7  Score=33.77  Aligned_cols=43  Identities=33%  Similarity=0.370  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         330 KRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY  372 (394)
Q Consensus       330 keA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~  372 (394)
                      .++.+++.+||....+-+++|+.+|+++.++...+-+++-...
T Consensus        54 ~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~   96 (132)
T PF00430_consen   54 AEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERI   96 (132)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555566666666666655555555555444

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=82.74  E-value=8  Score=37.18  Aligned_cols=56  Identities=18%  Similarity=0.205  Sum_probs=43.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         318 VSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE  373 (394)
Q Consensus       318 ~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~  373 (394)
                      ....|..-+.||+++.....+|..++.+.+.+|+.||++-+..-.+.++..--+-+
T Consensus       178 i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae  233 (266)
T cd03404         178 VQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQ  233 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHH
Confidence            45568889999999999999998888888889998888877776666665544443

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>PRK00106 hypothetical protein; Provisional

Probab=81.26  E-value=6.5  Score=42.73  Aligned_cols=50  Identities=30%  Similarity=0.288  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY  372 (394)
Q Consensus       323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~  372 (394)
                      +-+-+|+++|.+|+.+|+..--...++++.+|++|+..+|.+-|++|++.
T Consensus        46 ~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eE   95 (535)
T PRK00106         46 NLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSE   95 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44457999999999999887667789999999999999999988887433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	394
2k88_A	60	Vacuolar proton pump subunit G; G subunit, V1VO AT	3e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-05

>2k88_A Vacuolar proton pump subunit G; G subunit, V1VO ATPase, VMA10P, hydrogen ION transport, hydrolase, ION transport, transport; NMR {Saccharomyces cerevisiae} Length = 60

 Score = 74.2 bits (182), Expect = 3e-17
 Identities = 23/55 (41%), Positives = 38/55 (69%)

Query: 319 SLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 373
             GI  LL AEK A E V++A+K +  +LKQAK +A ++I+ Y+ +++K  +E+E
Sbjct: 5   KNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFE 59

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 64/495 (12%), Positives = 136/495 (27%), Gaps = 159/495 (32%)

Query: 28  NSSHNGNKVQSNMI-----KITNIEIALIQDDLKHNDTII--------------QIANSL 68
           +  +N N+V +            +  AL++  L+    ++               +  S 
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLE--LRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 69  DILDESMRNVFDHTKKSIWRT-RQCLHAIEKRSSVVCANIEKL-KNIQKSVTIVSKSKYP 126
            +  +    +F       W   + C          V   ++KL   I  + T  S     
Sbjct: 175 KVQCKMDFKIF-------WLNLKNC-----NSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 127 YPYNGN-YSVHIQHEHVTPMYKCPLLLYD---------------KTEINTRDID--NKLK 168
                +     ++    +  Y+  LL+                 K  + TR     + L 
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 169 FYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHPGQV--IA 226
                  ++ H ++ L  +E          S++   L     ++  + +  +P ++  IA
Sbjct: 283 AATTTHISLDHHSMTLTPDEVK--------SLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 227 RKPITKKHDHTEQVKMEDAPK--SLISKGI-------LRTDFSKLAV----------VLK 267
              I       +  K  +  K  ++I   +        R  F +L+V          +L 
Sbjct: 335 ES-IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL- 392

Query: 268 LGAKTNKSIIWCQ----------NSMARIKSTAGWN--RTRSL---------------AL 300
                  S+IW            N + +           T S+               AL
Sbjct: 393 -------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 301 TRQ--TRYALPTK----PTRPPVVSLGIQQLLA---AEKRAAEKVAEAKK---------R 342
            R     Y +P         PP +       +          E++   +          +
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 343 KARRLKQAKEEAQ------EDIEKYRQEREKIFREYEAKVS-----------------HC 379
           K R    A   +       + ++ Y+        +YE  V+                 + 
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565

Query: 380 NIVLIIKAAANYFMF 394
           +++ I   A +  +F
Sbjct: 566 DLLRIALMAEDEAIF 580

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 43.2 bits (101), Expect = 3e-05
 Identities = 10/41 (24%), Positives = 24/41 (58%), Gaps = 5/41 (12%)

Query: 329 EKRAAEKVAEAKKRKARRLKQAKEEAQEDIEK-YRQEREKI 368
            KR  E  A +K  +     + +E+A++D+E+  +++ E++
Sbjct: 95  RKRLQELDAASKVMEQ----EWREKAKKDLEEWNQRQSEQV 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	394
4efa_G	119	V-type proton ATPase subunit G; heterotrimer, peri	99.92
2k6i_A	56	Uncharacterized protein MJ0223; H subunit, A1AO AT	95.48
1l2p_A	61	ATP synthase B chain; alpha helix, hydrolase; 1.55	94.08
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	91.5
3p8c_D	279	Wiskott-aldrich syndrome protein family member 1;	91.43
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	88.09

>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A

Probab=99.92  E-value=1.7e-25  Score=192.89  Aligned_cols=79  Identities=34%  Similarity=0.493  Sum_probs=65.2

Q ss_pred             CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHhh
Q psy2197         312 PTRPPVVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV--SHCNIVLIIKAAA  389 (394)
Q Consensus       312 ~~~~a~~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~--s~~~~~~e~e~~t  389 (394)
                      |.|+.|||+|||+||+||++|++||++||++|++||||||+||++||++||+++|+||+++++++  +.+++..++|++|
T Consensus         2 ~~~~mSqs~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eFk~~e~~~~g~~~~~~~~~e~eT   81 (119)
T 4efa_G            2 PKVPMSQKNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFEQKNAGGVGELEKKAEAGV   81 (119)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CTTSSS
T ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            78889999999999999999999999999999999999999999999999999999999999999  5588888888887


Q ss_pred             c
Q psy2197         390 N  390 (394)
Q Consensus       390 ~  390 (394)
                      .
T Consensus        82 ~   82 (119)
T 4efa_G           82 Q   82 (119)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}

Probab=95.48  E-value=0.0087  Score=45.25  Aligned_cols=43  Identities=30%  Similarity=0.321  Sum_probs=36.7

Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         314 RPPVVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQE  356 (394)
Q Consensus       314 ~~a~~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~  356 (394)
                      |..+...-|..+-.||.+|.+||.+|.+.+.+++..|++||..
T Consensus        10 ~~~~~~EvL~eIKeAE~~A~~iVeeA~~ea~~ii~eAreeAke   52 (56)
T 2k6i_A           10 MGVSVMEAIKEVKLAEEQAVKEIEEAKNRAEQIKAEAIEEAKK   52 (56)
T ss_dssp             CCCCCTTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334455677788999999999999999999999999999975

>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1

Probab=94.08  E-value=0.41  Score=35.39  Aligned_cols=48  Identities=27%  Similarity=0.338  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR  370 (394)
Q Consensus       323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~  370 (394)
                      ++|-.|..+|..||.+|++...+-..+++.+|..|.+....+-..+..
T Consensus         2 ~~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie   49 (61)
T 1l2p_A            2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIE   49 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478899999999999999988877777777777666665554444433

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=91.50  E-value=0.82  Score=40.71  Aligned_cols=46  Identities=17%  Similarity=0.221  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY  372 (394)
Q Consensus       327 ~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~  372 (394)
                      +|+.+|..|+++|++.-.+=+.+|+++|++..+....+-|.+-+..
T Consensus        10 eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~   55 (187)
T 3v6i_A           10 EVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAA   55 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4778899999999998888899999999988888877766666544

>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}

Probab=91.43  E-value=0.49  Score=45.93  Aligned_cols=54  Identities=11%  Similarity=0.219  Sum_probs=47.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2197          60 TIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNI  113 (394)
Q Consensus        60 tI~qi~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~gs  113 (394)
                      |+.-|+.-|..|...+++||+-+..-+.....|+..|+.||..++++|.++-..
T Consensus        33 tL~gilRQL~dLs~~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v~~ld~~   86 (279)
T 3p8c_D           33 SLANIIRQLSSLSKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPK   86 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            456667778888999999999999999999999999999999999999876543

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=88.09  E-value=0.68  Score=33.99  Aligned_cols=31  Identities=39%  Similarity=0.499  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQED  357 (394)
Q Consensus       327 ~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~E  357 (394)
                      +|+++|..|+.+|++.-..=+.+|+.+|+++
T Consensus        18 eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~~   48 (52)
T 2kk7_A           18 DAKAEANKIISEAEAEKAKILEKAKEEAEKR   48 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5888999999999888888888888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	394
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	95.05
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	81.23

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.076  Score=38.80  Aligned_cols=47  Identities=28%  Similarity=0.343  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIF  369 (394)
Q Consensus       323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef  369 (394)
                      .+|-+|-.+|++||.+|+++..+-+.+||.+|..|-+....+-..+.
T Consensus         2 e~L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eI   48 (61)
T d1l2pa_           2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEI   48 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36889999999999999999999999999999988877665544443

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=81.23  E-value=2.8  Score=30.05  Aligned_cols=41  Identities=24%  Similarity=0.251  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197         325 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY  372 (394)
Q Consensus       325 LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~  372 (394)
                      +-+|.++|..||.+||..       |+.||++=|+.=+.+=|.|-+.-
T Consensus        15 i~qA~~ra~qIveeak~~-------A~~Ea~rI~~~A~~eIe~E~~~A   55 (61)
T d1l2pa_          15 IEQANKRRSQILDEAKAE-------AEQERTKIVAQAQAEIEAERKRA   55 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999764       66676666666666666665543