Psyllid ID: psy2262

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MLNLVIDASLSDILPVWVREKTKTLWDMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQLTPGK
Secondary Structure (PSIPRED)
cccHHHHccccccccccHHccccHHHHHHHHccccccccccccccccccccEEEEEEEEccccccccccccEEEEEcccccEEEEEEcccccccccccEEEEEcccccccccccEEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccHHHcccccHHccccHHHHHHHcccccEEccccccHccccccccEEEEEEEcccccccHHHHHHHEEEccccEEEEEEEccccccccccEEEEEEccccccccccEEEEEEEccccccccccccccccc
Coil and Loop (DISEMBL)
MLNLVIdaslsdilpVWVREKTKTLWdmhmkgphykkrpprqpllgkpfakGVVLKVLIkkpkkpnsanrkcVLVRLSTGKEmvayipgeghnlqehNIVLckvgrvkdlpgvkikcvrgvydlphvvkktqltpgk
Flexible Loop (DISEMBL)
mlnlvidaslsdilpvWVREKTKTLwdmhmkgphykkrpprqpllgkpFAKGVVLKVlikkpkkpnsanrkcvLVRLSTGKEMVAYIPgeghnlqeHNIVLCKVGRVKDLPGVKIkcvrgvydlphvvkktqltpgk
Low Complexity Region (SEG)
MLNLVIDASLSDILPVWVREKTKTLWDMHMKGPHYKKRPPRQPLLGKPFAkgvvlkvlikkpkkpNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQLTPGK
Disordered region (IsUnstruct)
***LVIDASLSDILPVWVREKTKTLWDMHMK************LLGKPFAKGVVLKVLIKK*******NRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVK********
Disordered Region (DISOPRED)
*******************EKTKTLWD********************PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLP************
Disordered Region (DISEMBL)
MLNLVIDASLSDILPVWVREKTKTLWDMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQLTPGK
Disordered Region (DISPRO)
MLNLVIDASLSDILPVWVREKTKTLWDMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLP************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNLVIDASLSDILPVWVREKTKTLWDMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQLTPGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
P10735	140	40S ribosomal protein S12	yes	N/A	0.795	0.778	0.834	5e-48
O35680	139	28S ribosomal protein S12	yes	N/A	0.927	0.913	0.549	2e-31
Q29RU1	139	28S ribosomal protein S12	yes	N/A	0.927	0.913	0.541	1e-30
O15235	138	28S ribosomal protein S12	yes	N/A	0.927	0.920	0.549	4e-30
Q5RB32	139	28S ribosomal protein S12	yes	N/A	0.927	0.913	0.537	6e-29
P26871	126	Ribosomal protein S12, mi	N/A	N/A	0.737	0.801	0.539	9e-23
B2GIK9	124	30S ribosomal protein S12	yes	N/A	0.795	0.879	0.518	2e-22
Q6MER6	126	30S ribosomal protein S12	yes	N/A	0.708	0.769	0.591	2e-22
Q96033	125	Ribosomal protein S12, mi	N/A	N/A	0.737	0.808	0.558	2e-22
Q2S3R9	124	30S ribosomal protein S12	yes	N/A	0.649	0.717	0.584	3e-22

>sp|P10735|RT12_DROME 40S ribosomal protein S12, mitochondrial OS=Drosophila melanogaster GN=tko PE=1 SV=1

 Score =  189 bits (479), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 91/109 (83%), Positives = 98/109 (89%)

Query: 24  TLWDMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEM 83
           +L  MH  GPH K RPPRQPL GKPFAKGVVLK LIKKPKKPNSANRKCVLVRLSTGKEM
Sbjct: 32  SLQQMHRSGPHIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTGKEM 91

Query: 84  VAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
           VAYIPG GHNLQEHNIVLC+VGR++D+PGVK+K VRGVYDL HVVKK+Q
Sbjct: 92  VAYIPGIGHNLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVVKKSQ 140

Drosophila melanogaster (taxid: 7227)

>sp|O35680|RT12_MOUSE 28S ribosomal protein S12, mitochondrial OS=Mus musculus GN=Mrps12 PE=2 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 87/131 (66%), Gaps = 4/131 (3%)

Query: 2   LNLVIDASLSDILPVWVREKTKTLWDMHMKGPHYKKRPPRQ--PLLGKPFAKGVVLKVLI 59
           L   +   L+    +W      TL  MH  GP  +K PP++  P  G+P  KGVVL+  I
Sbjct: 10  LTTSLSRGLALAPQLWAARSMATLNQMHRLGP--RKEPPKRLGPTEGRPQLKGVVLRTFI 67

Query: 60  KKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVR 119
           +KPKKPNSANRKC  VRLSTGKE V +IPGEGH LQEH++VL + GR +DLPGVK+K VR
Sbjct: 68  RKPKKPNSANRKCCRVRLSTGKEAVCFIPGEGHTLQEHHVVLVEGGRTQDLPGVKLKVVR 127

Query: 120 GVYDLPHVVKK 130
           G YD  HV KK
Sbjct: 128 GKYDCGHVQKK 138

Mus musculus (taxid: 10090)

>sp|Q29RU1|RT12_BOVIN 28S ribosomal protein S12, mitochondrial OS=Bos taurus GN=MRPS12 PE=2 SV=1

 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 89/131 (67%), Gaps = 4/131 (3%)

Query: 2   LNLVIDASLSDILPVWVREKTKTLWDMHMKGPHYKKRPPRQP--LLGKPFAKGVVLKVLI 59
           L++ ++  L+     W      TL  +H +GP   K PP +P    G+P  KGVVL+  I
Sbjct: 10  LSMSLNYGLALAPRPWGTRPMATLNQLHRRGP--PKFPPSKPGPTEGRPQLKGVVLRTFI 67

Query: 60  KKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVR 119
           +KPKKPNSANRKC  VRLSTG+E V +IPGEGHNLQEH++VL + GR +DLPGVK+K VR
Sbjct: 68  RKPKKPNSANRKCCRVRLSTGREAVCFIPGEGHNLQEHHVVLVQGGRTQDLPGVKLKVVR 127

Query: 120 GVYDLPHVVKK 130
           G YD  HV KK
Sbjct: 128 GKYDCGHVQKK 138

Bos taurus (taxid: 9913)

>sp|O15235|RT12_HUMAN 28S ribosomal protein S12, mitochondrial OS=Homo sapiens GN=MRPS12 PE=1 SV=1

 Score =  130 bits (326), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 84/131 (64%), Gaps = 4/131 (3%)

Query: 2   LNLVIDASLSDILPVWVREKTKTLWDMHMKGPHYKKRPPRQ--PLLGKPFAKGVVLKVLI 59
           LN  +    + +  +W      TL  MH  GP   KRPPR+  P  G+P  KGVVL    
Sbjct: 10  LNTSLTCGPALVPRLWATCSMATLNQMHRLGP--PKRPPRKLGPTEGRPQLKGVVLCTFT 67

Query: 60  KKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVR 119
           +KPKKPNSANRKC  VRLSTG+E V +IPGEGH LQEH IVL + GR +DLPGVK+  VR
Sbjct: 68  RKPKKPNSANRKCCRVRLSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKLTVVR 127

Query: 120 GVYDLPHVVKK 130
           G YD  HV KK
Sbjct: 128 GKYDCGHVQKK 138

Homo sapiens (taxid: 9606)

>sp|Q5RB32|RT12_PONAB 28S ribosomal protein S12, mitochondrial OS=Pongo abelii GN=MRPS12 PE=2 SV=1

 Score =  125 bits (315), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 85/132 (64%), Gaps = 5/132 (3%)

Query: 2   LNLVIDASLSDILPVWVREKTKTLWDMH-MKGPHYKKRPPRQ--PLLGKPFAKGVVLKVL 58
           LN  +    + +  +W      TL  MH + GP   KRPP++  P  G+P  KGVVL   
Sbjct: 10  LNTSLTCGPALVPRLWATCSMATLNQMHRLGGP--PKRPPQKLGPTEGRPQLKGVVLCTF 67

Query: 59  IKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCV 118
            +KPKKPNSANRKC  VRLSTG+E V +IPGEGH LQEH IVL + GR +DLPGVK+  V
Sbjct: 68  TRKPKKPNSANRKCCRVRLSTGQEAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKLTVV 127

Query: 119 RGVYDLPHVVKK 130
           RG YD  HV KK
Sbjct: 128 RGKYDCGHVQKK 139

Pongo abelii (taxid: 9601)

>sp|P26871|RT12_MARPO Ribosomal protein S12, mitochondrial OS=Marchantia polymorpha GN=RPS12 PE=3 SV=2

 Score =  105 bits (262), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 70/102 (68%), Gaps = 1/102 (0%)

Query: 24  TLWDMHMKGPHYKKRPPRQPLLGK-PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
           T+  +  KG   K+R  R   L K P  +GV L+V  + PKKPNSA RK   VRL+   E
Sbjct: 3   TMNQLVRKGRESKRRTKRTRALNKCPQKQGVCLRVSTRSPKKPNSALRKIAKVRLTNRNE 62

Query: 83  MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDL 124
           ++AYIPGEGHNLQEH++V+ + GRV+DLPGVK  C+RGV DL
Sbjct: 63  IIAYIPGEGHNLQEHSVVMVRGGRVQDLPGVKYHCIRGVKDL 104

Protein S12 is involved in the translation initiation step.

Marchantia polymorpha (taxid: 3197)

>sp|B2GIK9|RS12_KOCRD 30S ribosomal protein S12 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rpsL PE=3 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 69/110 (62%), Gaps = 1/110 (0%)

Query: 24  TLWDMHMKGPHYKKRPPRQPLL-GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
           T+  +  KG H K    + P L G P  +GV  +V    PKKPNSA RK   V+L+ G E
Sbjct: 3   TIQQLVRKGRHSKVVKTKAPALKGNPMKRGVCTRVFTTTPKKPNSALRKVARVKLNGGVE 62

Query: 83  MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
           + AYIPGEGHNLQEH+IVL + GRVKDLPGV+ K VRG  D   V  + Q
Sbjct: 63  VTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIVRGALDTQGVKGRQQ 112

Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.

Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) (taxid: 378753)

>sp|Q6MER6|RS12_PARUW 30S ribosomal protein S12 OS=Protochlamydia amoebophila (strain UWE25) GN=rpsL PE=3 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 68/98 (69%), Gaps = 1/98 (1%)

Query: 36  KKRPPRQPLLGK-PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNL 94
           KKR  + P L K P  +GV L+V  K PKKPNSA RK   VRLSTG+E++AYI GEGHNL
Sbjct: 15  KKRRSKSPALQKCPQRRGVCLQVKTKTPKKPNSALRKVAWVRLSTGQEVIAYIGGEGHNL 74

Query: 95  QEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
           QEH+IVL + GRVKDLPGV+   VRG  D   V  + Q
Sbjct: 75  QEHSIVLVRGGRVKDLPGVRYHIVRGALDCAAVKDRKQ 112

Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.

Protochlamydia amoebophila (strain UWE25) (taxid: 264201)

>sp|Q96033|RT12_HELAN Ribosomal protein S12, mitochondrial OS=Helianthus annuus GN=RPS12 PE=2 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 68/102 (66%), Gaps = 1/102 (0%)

Query: 24  TLWDMHMKGPHYKKRPPRQPLLGK-PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
           TL  +   G   K+R  R   L + P  +GV L+V  + PKKPNSA RK   VRLS   +
Sbjct: 3   TLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHD 62

Query: 83  MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDL 124
           + AYIPGEGHNLQEH+IVL + GRVKDLPGVK  C+RGV DL
Sbjct: 63  IFAYIPGEGHNLQEHSIVLIRGGRVKDLPGVKFHCIRGVKDL 104

Protein S12 is involved in the translation initiation step.

Helianthus annuus (taxid: 4232)

>sp|Q2S3R9|RS12_SALRD 30S ribosomal protein S12 OS=Salinibacter ruber (strain DSM 13855 / M31) GN=rpsL PE=3 SV=2

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 60/89 (67%)

Query: 44  LLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCK 103
           L G P  +GV  +V    PKKPNSA RK   VRL+ G E+ AYIPGEGHNLQEH+IVL +
Sbjct: 24  LEGSPQRRGVCTRVYTTTPKKPNSALRKVARVRLTNGNEVTAYIPGEGHNLQEHSIVLVR 83

Query: 104 VGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
            GRVKDLPGVK   VRG  D   V ++ Q
Sbjct: 84  GGRVKDLPGVKYHIVRGALDTAGVEERRQ 112

Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.

Salinibacter ruber (strain DSM 13855 / M31) (taxid: 309807)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
194913252	140	GG12613 [Drosophila erecta] gi|190648333	0.795	0.778	0.825	3e-46
195060244	143	GH17581 [Drosophila grimshawi] gi|193896	0.795	0.762	0.825	3e-46
17933526	140	technical knockout, isoform B [Drosophil	0.795	0.778	0.834	4e-46
386763685	154	technical knockout, isoform C [Drosophil	0.795	0.707	0.834	4e-46
195347956	140	GM18879 [Drosophila sechellia] gi|195564	0.795	0.778	0.825	5e-46
125983242	140	GA20693 [Drosophila pseudoobscura pseudo	0.795	0.778	0.825	6e-46
195477625	140	GE16944 [Drosophila yakuba] gi|194187784	0.795	0.778	0.825	7e-46
195130193	141	GI15180 [Drosophila mojavensis] gi|19390	0.934	0.907	0.728	7e-46
347966740	138	AGAP013102-PA [Anopheles gambiae str. PE	0.875	0.869	0.764	1e-45
195397549	141	GJ17060 [Drosophila virilis] gi|19414715	0.934	0.907	0.736	1e-45

>gi|194913252|ref|XP_001982657.1| GG12613 [Drosophila erecta] gi|190648333|gb|EDV45626.1| GG12613 [Drosophila erecta]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 90/109 (82%), Positives = 98/109 (89%)

Query: 24  TLWDMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEM 83
           +L  MH  GPH K RPPRQPL GKPFAKGVVLK LIKKPKKPNSANRKCVLVRLSTGKEM
Sbjct: 32  SLQQMHRSGPHVKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTGKEM 91

Query: 84  VAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
           VAYIPG GHNLQEHNIVLC+VGR++D+PGVK+K VRGVYDL HV+KK+Q
Sbjct: 92  VAYIPGIGHNLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVIKKSQ 140

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195060244|ref|XP_001995772.1| GH17581 [Drosophila grimshawi] gi|193896558|gb|EDV95424.1| GH17581 [Drosophila grimshawi]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 90/109 (82%), Positives = 97/109 (88%)

Query: 24  TLWDMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEM 83
           +L  MH  GPH K RPPRQPL GKPFAKGVVLK LIKKPKKPNSANRKC LVRLSTGKEM
Sbjct: 35  SLQQMHRTGPHIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCALVRLSTGKEM 94

Query: 84  VAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
           VAYIPG GHNLQEHNIVLC+VGR++D+PGVK+K VRGVYDL HV+KKTQ
Sbjct: 95  VAYIPGIGHNLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVIKKTQ 143

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17933526|ref|NP_525050.1| technical knockout, isoform B [Drosophila melanogaster] gi|134053|sp|P10735.1|RT12_DROME RecName: Full=40S ribosomal protein S12, mitochondrial; Short=MRP-S12; Short=S12mt; AltName: Full=MT-RPS12; AltName: Full=Protein technical knockout locus; Flags: Precursor gi|158602|gb|AAA28935.1| tko gene product (pot.); putative [Drosophila melanogaster] gi|6691818|emb|CAB65841.1| EG:BACH59J11.1 [Drosophila melanogaster] gi|7290321|gb|AAF45781.1| technical knockout, isoform B [Drosophila melanogaster] gi|54650528|gb|AAV36843.1| RH56553p [Drosophila melanogaster]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/109 (83%), Positives = 98/109 (89%)

Query: 24  TLWDMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEM 83
           +L  MH  GPH K RPPRQPL GKPFAKGVVLK LIKKPKKPNSANRKCVLVRLSTGKEM
Sbjct: 32  SLQQMHRSGPHIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTGKEM 91

Query: 84  VAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
           VAYIPG GHNLQEHNIVLC+VGR++D+PGVK+K VRGVYDL HVVKK+Q
Sbjct: 92  VAYIPGIGHNLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVVKKSQ 140

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386763685|ref|NP_001245490.1| technical knockout, isoform C [Drosophila melanogaster] gi|6594153|emb|CAB63528.1| EG:BACH59J11.1 [Drosophila melanogaster] gi|284793740|gb|ADB93360.1| MIP16231p [Drosophila melanogaster] gi|383293163|gb|AFH07204.1| technical knockout, isoform C [Drosophila melanogaster]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/109 (83%), Positives = 98/109 (89%)

Query: 24  TLWDMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEM 83
           +L  MH  GPH K RPPRQPL GKPFAKGVVLK LIKKPKKPNSANRKCVLVRLSTGKEM
Sbjct: 46  SLQQMHRSGPHIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTGKEM 105

Query: 84  VAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
           VAYIPG GHNLQEHNIVLC+VGR++D+PGVK+K VRGVYDL HVVKK+Q
Sbjct: 106 VAYIPGIGHNLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVVKKSQ 154

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195347956|ref|XP_002040517.1| GM18879 [Drosophila sechellia] gi|195564791|ref|XP_002105996.1| GD16364 [Drosophila simulans] gi|194121945|gb|EDW43988.1| GM18879 [Drosophila sechellia] gi|194203362|gb|EDX16938.1| GD16364 [Drosophila simulans]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 90/109 (82%), Positives = 98/109 (89%)

Query: 24  TLWDMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEM 83
           +L  MH  GPH K RPPRQPL GKPFAKGVVLK LIKKPKKPNSANRKCVLVRLSTGKEM
Sbjct: 32  SLQQMHRSGPHIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTGKEM 91

Query: 84  VAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
           VAYIPG GHNLQEHNIVLC+VGR++D+PGVK+K VRGVYDL HV+KK+Q
Sbjct: 92  VAYIPGIGHNLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVIKKSQ 140

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125983242|ref|XP_001355386.1| GA20693 [Drosophila pseudoobscura pseudoobscura] gi|54643701|gb|EAL32444.1| GA20693 [Drosophila pseudoobscura pseudoobscura]

 Score =  188 bits (477), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 90/109 (82%), Positives = 98/109 (89%)

Query: 24  TLWDMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEM 83
           +L  MH  GPH K RPPRQPL GKPFAKGVVLK LIKKPKKPNSANRKCVLVRLSTGKEM
Sbjct: 32  SLNQMHRTGPHIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTGKEM 91

Query: 84  VAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
           VAYIPG GHNLQEHNIVLC+VGR++D+PGVK+K VRGVYDL HV+KK+Q
Sbjct: 92  VAYIPGIGHNLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVIKKSQ 140

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195477625|ref|XP_002100260.1| GE16944 [Drosophila yakuba] gi|194187784|gb|EDX01368.1| GE16944 [Drosophila yakuba]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 90/109 (82%), Positives = 97/109 (88%)

Query: 24  TLWDMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEM 83
           +L  MH  GPH K RPPRQPL GKPFAKGVVLK LIKKPKKPNSANRKCVLVRLSTGKEM
Sbjct: 32  SLQQMHRSGPHIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTGKEM 91

Query: 84  VAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
           VAYIPG GHNLQEHNIVLC+VGR++D+PGVK+K VRGVYDL HV+KK Q
Sbjct: 92  VAYIPGIGHNLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVIKKGQ 140

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195130193|ref|XP_002009537.1| GI15180 [Drosophila mojavensis] gi|193907987|gb|EDW06854.1| GI15180 [Drosophila mojavensis]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 94/129 (72%), Positives = 104/129 (80%), Gaps = 1/129 (0%)

Query: 4   LVIDASLSDILPVWVREKTKTLWDMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPK 63
           L   A  S+ L   +R    +L  MH  GPH K RPPRQPL GKPFAKGVVLK LIKKPK
Sbjct: 14  LTTQALQSNYLTAALRGMA-SLNQMHRTGPHIKTRPPRQPLDGKPFAKGVVLKTLIKKPK 72

Query: 64  KPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYD 123
           KPNSANRKCVLVRLSTGKEMVAYIPG GHNLQEHNI+LC+VGR++D+PGVK+K VRGVYD
Sbjct: 73  KPNSANRKCVLVRLSTGKEMVAYIPGIGHNLQEHNIILCRVGRLQDVPGVKLKAVRGVYD 132

Query: 124 LPHVVKKTQ 132
           L HV+KK Q
Sbjct: 133 LAHVIKKGQ 141

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347966740|ref|XP_003435965.1| AGAP013102-PA [Anopheles gambiae str. PEST] gi|333469920|gb|EGK97448.1| AGAP013102-PA [Anopheles gambiae str. PEST]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/123 (76%), Positives = 102/123 (82%), Gaps = 3/123 (2%)

Query: 8   ASLSDILPVWVREKTKTLWDMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNS 67
           A++S  L    R    TL  MH  GPH+K RPPRQPL GKPFAKGVVLK LIKKPKKPNS
Sbjct: 18  AAISSFLQ---RSTMATLNQMHRTGPHFKVRPPRQPLDGKPFAKGVVLKTLIKKPKKPNS 74

Query: 68  ANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHV 127
           ANRKCVLVRLSTGKE+VAYIPG GHNLQEHNIVL +VGR +DLPGVKIKCVRG YDLPHV
Sbjct: 75  ANRKCVLVRLSTGKELVAYIPGIGHNLQEHNIVLVRVGRCQDLPGVKIKCVRGKYDLPHV 134

Query: 128 VKK 130
           +K+
Sbjct: 135 IKQ 137

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195397549|ref|XP_002057391.1| GJ17060 [Drosophila virilis] gi|194147158|gb|EDW62877.1| GJ17060 [Drosophila virilis]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/129 (73%), Positives = 104/129 (80%), Gaps = 1/129 (0%)

Query: 4   LVIDASLSDILPVWVREKTKTLWDMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPK 63
           L   A  S+ L   +R    +L  MH  GPH KKRPPRQPL GKPFAKGVVLK LIKKPK
Sbjct: 14  LTAQALQSNYLCAALRGMA-SLNQMHRTGPHIKKRPPRQPLDGKPFAKGVVLKTLIKKPK 72

Query: 64  KPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYD 123
           KPNSANRKC LVRLSTGKEMVAYIPG GHNLQEHNIVLC+VGR++D+PGVK+K VRGVYD
Sbjct: 73  KPNSANRKCALVRLSTGKEMVAYIPGIGHNLQEHNIVLCRVGRLQDVPGVKLKAVRGVYD 132

Query: 124 LPHVVKKTQ 132
           L HV+KK Q
Sbjct: 133 LAHVIKKGQ 141

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
FB|FBgn0003714	140	tko "technical knockout" [Dros	0.795	0.778	0.706	6.3e-37
MGI|MGI:1346333	139	Mrps12 "mitochondrial ribosoma	0.824	0.812	0.504	3.3e-24
ZFIN|ZDB-GENE-091204-48	143	si:dkey-17e16.10 "si:dkey-17e1	0.934	0.895	0.485	4.2e-24
UNIPROTKB|O15235	138	MRPS12 "28S ribosomal protein	0.846	0.840	0.504	1.8e-23
UNIPROTKB|Q29RU1	139	MRPS12 "28S ribosomal protein	0.817	0.805	0.5	3.8e-23
RGD|1306221	139	Mrps12 "mitochondrial ribosoma	0.824	0.812	0.495	6.1e-23
UNIPROTKB|E2RE10	139	MRPS12 "Uncharacterized protei	0.832	0.820	0.482	1e-22
UNIPROTKB|H9L236	110	MRPS12 "Uncharacterized protei	0.773	0.963	0.509	2.6e-22
TIGR_CMR|NSE_0689	122	NSE_0689 "ribosomal protein S1	0.605	0.680	0.523	2.9e-16
TIGR_CMR|CJE_0540	128	CJE_0540 "ribosomal protein S1	0.481	0.515	0.621	4.7e-16

FB|FBgn0003714 tko "technical knockout" [Drosophila melanogaster (taxid:7227)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 77/109 (70%), Positives = 84/109 (77%)

Query:    24 TLWDMHMKGPHYKKRPPRQPLLGKPFAXXXXXXXXXXXXXXXNSANRKCVLVRLSTGKEM 83
             +L  MH  GPH K RPPRQPL GKPFA               NSANRKCVLVRLSTGKEM
Sbjct:    32 SLQQMHRSGPHIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTGKEM 91

Query:    84 VAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
             VAYIPG GHNLQEHNIVLC+VGR++D+PGVK+K VRGVYDL HVVKK+Q
Sbjct:    92 VAYIPGIGHNLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVVKKSQ 140

GO:0007638 "mechanosensory behavior" evidence=IMP

GO:0009612 "response to mechanical stimulus" evidence=IMP

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0008049 "male courtship behavior" evidence=IMP

GO:0007619 "courtship behavior" evidence=TAS

GO:0001666 "response to hypoxia" evidence=IDA

MGI|MGI:1346333 Mrps12 "mitochondrial ribosomal protein S12" [Mus musculus (taxid:10090)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 59/117 (50%), Positives = 70/117 (59%)

Query:    16 VWVREKTKTLWDMHMKGPHYKKRPPRQ--PLLGKPFAXXXXXXXXXXXXXXXNSANRKCV 73
             +W      TL  MH  GP  +K PP++  P  G+P                 NSANRKC 
Sbjct:    24 LWAARSMATLNQMHRLGP--RKEPPKRLGPTEGRPQLKGVVLRTFIRKPKKPNSANRKCC 81

Query:    74 LVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKK 130
              VRLSTGKE V +IPGEGH LQEH++VL + GR +DLPGVK+K VRG YD  HV KK
Sbjct:    82 RVRLSTGKEAVCFIPGEGHTLQEHHVVLVEGGRTQDLPGVKLKVVRGKYDCGHVQKK 138

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

ZFIN|ZDB-GENE-091204-48 si:dkey-17e16.10 "si:dkey-17e16.10" [Danio rerio (taxid:7955)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 67/138 (48%), Positives = 79/138 (57%)

Query:     1 MLNLVIDASLSDIL---PVWVREKTKTLWDMHMKGPHYKKRPPRQPL---LGKPFAXXXX 54
             ML+  + AS S  L   P++ R    TL  MH KG   K  PPR+ +    G P      
Sbjct:    10 MLSSALQASRSVSLWSAPLFSRTMA-TLNQMHRKG---KPPPPRRKISATFGHPQLKAVV 65

Query:    55 XXXXXXXXXXXNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVK 114
                        NSANRKC  VRLS G+E V YIPGEGHNLQEHN+VL + GR +DLPGVK
Sbjct:    66 LKTMIRKPKKPNSANRKCAQVRLSNGQEAVVYIPGEGHNLQEHNVVLVQGGRTQDLPGVK 125

Query:   115 IKCVRGVYDLPHVVKKTQ 132
             +  +RG YD  HVVKK Q
Sbjct:   126 LAVIRGKYDCAHVVKKKQ 143

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|O15235 MRPS12 "28S ribosomal protein S12, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 61/121 (50%), Positives = 71/121 (58%)

Query:    13 ILP-VWVREKTKTLWDMHMKGPHYKKRPPRQ--PLLGKPFAXXXXXXXXXXXXXXXNSAN 69
             ++P +W      TL  MH  GP   KRPPR+  P  G+P                 NSAN
Sbjct:    20 LVPRLWATCSMATLNQMHRLGP--PKRPPRKLGPTEGRPQLKGVVLCTFTRKPKKPNSAN 77

Query:    70 RKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVK 129
             RKC  VRLSTG+E V +IPGEGH LQEH IVL + GR +DLPGVK+  VRG YD  HV K
Sbjct:    78 RKCCRVRLSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKLTVVRGKYDCGHVQK 137

Query:   130 K 130
             K
Sbjct:   138 K 138

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q29RU1 MRPS12 "28S ribosomal protein S12, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 58/116 (50%), Positives = 69/116 (59%)

Query:    17 WVREKTKTLWDMHMKGPHYKKRPPRQP--LLGKPFAXXXXXXXXXXXXXXXNSANRKCVL 74
             W      TL  +H +GP   K PP +P    G+P                 NSANRKC  
Sbjct:    25 WGTRPMATLNQLHRRGP--PKFPPSKPGPTEGRPQLKGVVLRTFIRKPKKPNSANRKCCR 82

Query:    75 VRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKK 130
             VRLSTG+E V +IPGEGHNLQEH++VL + GR +DLPGVK+K VRG YD  HV KK
Sbjct:    83 VRLSTGREAVCFIPGEGHNLQEHHVVLVQGGRTQDLPGVKLKVVRGKYDCGHVQKK 138

GO:0005739 "mitochondrion" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1306221 Mrps12 "mitochondrial ribosomal protein S12" [Rattus norvegicus (taxid:10116)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 58/117 (49%), Positives = 68/117 (58%)

Query:    16 VWVREKTKTLWDMHMKGPHYKKRPPRQ--PLLGKPFAXXXXXXXXXXXXXXXNSANRKCV 73
             +W      TL  MH  G    K PP++  P  G+P                 NSANRKC 
Sbjct:    24 LWATRSMATLNQMHRLGR--PKEPPKRLGPTEGRPQLKGVVLRTFIRKPKKPNSANRKCC 81

Query:    74 LVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKK 130
              VRLSTGKE V +IPGEGH LQEH++VL + GR +DLPGVK+K VRG YD  HV KK
Sbjct:    82 RVRLSTGKEAVCFIPGEGHTLQEHHVVLVEGGRTQDLPGVKLKVVRGKYDCGHVQKK 138

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006412 "translation" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

UNIPROTKB|E2RE10 MRPS12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 56/116 (48%), Positives = 68/116 (58%)

Query:    16 VWVREKTKTLWDMHMKG-PHYKKRPPRQPLLGKPFAXXXXXXXXXXXXXXXNSANRKCVL 74
             +W      TL  MH +G P +   PP  P  G+P                 NSANRKC  
Sbjct:    24 LWTTRTMATLNQMHRRGLPKWPP-PPLGPTAGRPQLKGVVLRTFIRKPKKPNSANRKCCR 82

Query:    75 VRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKK 130
             VRLSTG+E V +IPGEGH+LQEH++VL + GR +DLPGVK+  VRG YD  HV KK
Sbjct:    83 VRLSTGREAVCFIPGEGHSLQEHHVVLVQGGRTQDLPGVKLTVVRGKYDCGHVQKK 138

GO:0005739 "mitochondrion" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|H9L236 MRPS12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 55/108 (50%), Positives = 67/108 (62%)

Query:    24 TLWDMHMKGPHYKKRPPRQ-PLLGKPFAXXXXXXXXXXXXXXXNSANRKCVLVRLSTGKE 82
             TL  MH +G   K  PP+  P  G+P                 NSANRKCV VRLS G+E
Sbjct:     3 TLNQMHRQG-RPKPPPPKPGPTFGRPQLKGVVVRNLIRKPKKPNSANRKCVRVRLSNGRE 61

Query:    83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKK 130
             +V ++PGEGHNLQEH++VL + GR +DLPGVK+  VRG YD  HV KK
Sbjct:    62 VVCFVPGEGHNLQEHHVVLVQGGRTQDLPGVKLTVVRGKYDCAHVQKK 109

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

TIGR_CMR|NSE_0689 NSE_0689 "ribosomal protein S12" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 44/84 (52%), Positives = 51/84 (60%)

Query:    41 RQPLLGK-PFAXXXXXXXXXXXXXXXNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNI 99
             R P L K P                 NSA RK   VRLS G E++AYIPGEGHNLQEH++
Sbjct:    20 RVPALNKNPLKRGICSKVYTTTPKKPNSALRKVARVRLSGGAEVIAYIPGEGHNLQEHSV 79

Query:   100 VLCKVGRVKDLPGVKIKCVRGVYD 123
             V  + GRVKDLPGV+   VRGV+D
Sbjct:    80 VCIRGGRVKDLPGVRYHIVRGVFD 103

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

TIGR_CMR|CJE_0540 CJE_0540 "ribosomal protein S12" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 41/66 (62%), Positives = 49/66 (74%)

Query:    66 NSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLP 125
             NSA RK   VRL++G E+++YI GEGHNLQEH+IVL + GRVKDLPGVK   VRG  D  
Sbjct:    46 NSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGALDTA 105

Query:   126 HVVKKT 131
              V K+T
Sbjct:   106 GVAKRT 111

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0006450 "regulation of translational fidelity" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4AAQ4	RS12_MYCHJ	No assigned EC number	0.5681	0.6423	0.6330	yes	N/A
B3PMF1	RS12_MYCA5	No assigned EC number	0.5882	0.6204	0.6159	yes	N/A
C5CC69	RS12_MICLC	No assigned EC number	0.5842	0.6496	0.7177	yes	N/A
A6GZA3	RS12_FLAPJ	No assigned EC number	0.5882	0.6204	0.6692	yes	N/A
P59163	RS12_COREF	No assigned EC number	0.5	0.7956	0.8934	yes	N/A
O14182	RT12_SCHPO	No assigned EC number	0.5632	0.6350	0.5370	yes	N/A
P59162	RS12_BIFLO	No assigned EC number	0.5842	0.6496	0.7235	yes	N/A
P10735	RT12_DROME	No assigned EC number	0.8348	0.7956	0.7785	yes	N/A
P0A4A3	RS12_STRCO	No assigned EC number	0.5090	0.7956	0.8861	yes	N/A
A1A0S8	RS12_BIFAA	No assigned EC number	0.5842	0.6496	0.7235	yes	N/A
P0A4A4	RS12_STRAW	No assigned EC number	0.5090	0.7956	0.8861	yes	N/A
Q6NJD8	RS12_CORDI	No assigned EC number	0.5	0.7956	0.8861	yes	N/A
B4U739	RS12_HYDS0	No assigned EC number	0.5463	0.7080	0.7185	yes	N/A
C3PKN9	RS12_CORA7	No assigned EC number	0.5090	0.7956	0.8861	yes	N/A
Q601W6	RS12_MYCH2	No assigned EC number	0.5681	0.6423	0.6330	yes	N/A
O35680	RT12_MOUSE	No assigned EC number	0.5496	0.9270	0.9136	yes	N/A
Q2S3R9	RS12_SALRD	No assigned EC number	0.5842	0.6496	0.7177	yes	N/A
A5FMY5	RS12_FLAJ1	No assigned EC number	0.5882	0.6204	0.6692	yes	N/A
A7NR68	RS12_ROSCS	No assigned EC number	0.5862	0.6350	0.6041	yes	N/A
O15235	RT12_HUMAN	No assigned EC number	0.5496	0.9270	0.9202	yes	N/A
B2GIK9	RS12_KOCRD	No assigned EC number	0.5181	0.7956	0.8790	yes	N/A
Q5SHN3	RS12_THET8	No assigned EC number	0.5333	0.7591	0.7878	yes	N/A
A0LRL5	RS12_ACIC1	No assigned EC number	0.5	0.7956	0.8790	yes	N/A
B1W419	RS12_STRGG	No assigned EC number	0.5090	0.7956	0.8861	yes	N/A
Q4A8T5	RS12_MYCH7	No assigned EC number	0.5681	0.6423	0.6330	yes	N/A
P92532	RT12_ARATH	No assigned EC number	0.5490	0.7372	0.808	yes	N/A
Q4JT37	RS12_CORJK	No assigned EC number	0.5	0.7956	0.8861	yes	N/A
A5USJ4	RS12_ROSS1	No assigned EC number	0.5862	0.6350	0.6041	yes	N/A
B3E073	RS12_METI4	No assigned EC number	0.5094	0.7664	0.7446	yes	N/A
Q29RU1	RT12_BOVIN	No assigned EC number	0.5419	0.9270	0.9136	yes	N/A
Q8NT21	RS12_CORGL	No assigned EC number	0.5090	0.7956	0.8934	yes	N/A
A1SNN8	RS12_NOCSJ	No assigned EC number	0.5090	0.7956	0.8790	yes	N/A
Q6MER6	RS12_PARUW	No assigned EC number	0.5918	0.7080	0.7698	yes	N/A
C5CGR9	RS12_KOSOT	No assigned EC number	0.5617	0.6496	0.7177	yes	N/A
B8DTV4	RS12_BIFA0	No assigned EC number	0.5842	0.6496	0.7235	yes	N/A
A4QBG7	RS12_CORGB	No assigned EC number	0.5090	0.7956	0.8934	yes	N/A
B1ZNF2	RS12_OPITP	No assigned EC number	0.5747	0.6350	0.6904	yes	N/A
Q5RB32	RT12_PONAB	No assigned EC number	0.5378	0.9270	0.9136	yes	N/A
P17293	RS12_THETH	No assigned EC number	0.5333	0.7591	0.7878	yes	N/A
B7GU49	RS12_BIFLS	No assigned EC number	0.5730	0.6496	0.7235	yes	N/A
A0M5A2	RS12_GRAFK	No assigned EC number	0.6	0.6204	0.6854	yes	N/A
P61941	RS12_THET2	No assigned EC number	0.5333	0.7591	0.7878	yes	N/A
A5IZ35	RS12_MYCAP	No assigned EC number	0.5764	0.6204	0.6204	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	137
cd03368	108	cd03368, Ribosomal_S12, S12-like family, 30S ribos	6e-52
COG0048	129	COG0048, RpsL, Ribosomal protein S12 [Translation,	1e-34
PRK05163	124	PRK05163, rpsL, 30S ribosomal protein S12; Validat	1e-33
pfam00164	122	pfam00164, Ribosomal_S12, Ribosomal protein S12	4e-33
TIGR00981	124	TIGR00981, rpsL_bact, ribosomal protein S12, bacte	2e-32
CHL00051	123	CHL00051, rps12, ribosomal protein S12	2e-30
PTZ00115	290	PTZ00115, PTZ00115, 40S ribosomal protein S12; Pro	3e-27
cd00319	95	cd00319, Ribosomal_S12_like, Ribosomal protein S12	1e-17
cd03367	115	cd03367, Ribosomal_S23, S12-like family, 40S ribos	3e-12
PTZ00067	143	PTZ00067, PTZ00067, 40S ribosomal S23; Provisional	2e-10
TIGR00982	139	TIGR00982, S23_S12_E_A, ribosomal protein S23 (S12	2e-09
PRK04211	145	PRK04211, rps12P, 30S ribosomal protein S12P; Revi	9e-09

>gnl|CDD|239466 cd03368, Ribosomal_S12, S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit interactions

 Score =  159 bits (405), Expect = 6e-52
 Identities = 62/108 (57%), Positives = 72/108 (66%), Gaps = 1/108 (0%)

Query: 24  TLWDMHMKGPHYKKRPPRQP-LLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
           T+  +  KG   KK+  + P L G P  KGV LKV    PKKPNSA RK   VRLS GKE
Sbjct: 1   TINQLIRKGRKKKKKKSKSPALEGCPQKKGVCLKVYTTTPKKPNSALRKVARVRLSNGKE 60

Query: 83  MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKK 130
           + AYIPGEGHNLQEH++VL + GRVKDLPGV+   VRGV DL  V  +
Sbjct: 61  VTAYIPGEGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGVLDLAGVKNR 108

S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as a control element for the rRNA- and tRNA-driven movements of translocation. Antibiotics such as streptomycin bind S12 and cause the ribosome to misread the genetic code. Length = 108

>gnl|CDD|223126 COG0048, RpsL, Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]

 Score =  116 bits (293), Expect = 1e-34
 Identities = 53/90 (58%), Positives = 61/90 (67%)

Query: 43  PLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLC 102
            L G P A+GV  +V    PKKPNSA RK   VRL  GKE+ AYIPGEGHNLQEH+ VL 
Sbjct: 29  ALEGAPQARGVCTRVYTVTPKKPNSALRKVARVRLINGKEVTAYIPGEGHNLQEHSEVLI 88

Query: 103 KVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
           + GRVKDLPGV+ K VRG  D   V+ + Q
Sbjct: 89  RGGRVKDLPGVRYKVVRGALDSLGVLDRGQ 118

Length = 129

>gnl|CDD|235355 PRK05163, rpsL, 30S ribosomal protein S12; Validated

 Score =  113 bits (286), Expect = 1e-33
 Identities = 49/89 (55%), Positives = 58/89 (65%)

Query: 44  LLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCK 103
           L   P  +GV  +V    PKKPNSA RK   VRL+ G E+ AYIPGEGHNLQEH++VL +
Sbjct: 24  LNACPQKRGVCTRVYTTTPKKPNSALRKVARVRLTNGFEVTAYIPGEGHNLQEHSVVLIR 83

Query: 104 VGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
            GRVKDLPGV+   VRG  D   V  + Q
Sbjct: 84  GGRVKDLPGVRYHIVRGALDTAGVKDRKQ 112

Length = 124

>gnl|CDD|201049 pfam00164, Ribosomal_S12, Ribosomal protein S12

 Score =  112 bits (282), Expect = 4e-33
 Identities = 51/90 (56%), Positives = 61/90 (67%)

Query: 43  PLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLC 102
            L G P  +G+ L+V    PKKPNSA RK   VRL  GKE+ AYIPG+GHNLQEH+ VL 
Sbjct: 22  ALEGCPQKRGICLEVYTITPKKPNSALRKVARVRLINGKEVTAYIPGDGHNLQEHSEVLI 81

Query: 103 KVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
           + GRVKDLPGV+ K VRG  D+  V  + Q
Sbjct: 82  RGGRVKDLPGVRYKVVRGALDVAGVSDRKQ 111

Length = 122

>gnl|CDD|130054 TIGR00981, rpsL_bact, ribosomal protein S12, bacterial/organelle

 Score =  111 bits (278), Expect = 2e-32
 Identities = 54/103 (52%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 31  KGPHYKKRPPRQPLLGK-PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPG 89
           KG   KK+  + P L   P  +GV  +V    PKKPNSA RK   VRL+ G E+ AYIPG
Sbjct: 10  KGRKKKKKKSKSPALEACPQKRGVCTRVYTTTPKKPNSALRKVARVRLTNGFEVTAYIPG 69

Query: 90  EGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
           EGHNLQEH++VL + GRVKDLPGV+   VRG  D   V  + Q
Sbjct: 70  EGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVKNRKQ 112

This model recognizes ribosomal protein S12 of Bacteria, mitochondria, and chloroplasts. The homologous ribosomal proteins of Archaea and Eukarya, termed S23 in Eukarya and S12 or S23 in Archaea, score below the trusted cutoff [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 124

>gnl|CDD|176992 CHL00051, rps12, ribosomal protein S12

 Score =  105 bits (264), Expect = 2e-30
 Identities = 46/88 (52%), Positives = 57/88 (64%)

Query: 36  KKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQ 95
           + +     L G P  +G   +V    PKKPNSA RK   VRL++G E+ AYIPG GHNLQ
Sbjct: 16  RNKTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ 75

Query: 96  EHNIVLCKVGRVKDLPGVKIKCVRGVYD 123
           EH++VL + GRVKDLPGV+   VRG  D
Sbjct: 76  EHSVVLVRGGRVKDLPGVRYHIVRGTLD 103

Length = 123

>gnl|CDD|240276 PTZ00115, PTZ00115, 40S ribosomal protein S12; Provisional

 Score =  101 bits (254), Expect = 3e-27
 Identities = 48/93 (51%), Positives = 60/93 (64%), Gaps = 1/93 (1%)

Query: 33  PHYKKRPPRQPLL-GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEG 91
           P  K +  R   L G P  KG+ +KV ++ P+KPNS  RK   VRLSTG+ +  YIPG G
Sbjct: 108 PKLKPKNRRSKWLEGAPQKKGICVKVRVQTPRKPNSGLRKVARVRLSTGRTVTVYIPGIG 167

Query: 92  HNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDL 124
           HNL  H++VL + GR KD+PG   K VRGVYDL
Sbjct: 168 HNLNTHSVVLVRGGRCKDVPGCNYKAVRGVYDL 200

Length = 290

>gnl|CDD|238196 cd00319, Ribosomal_S12_like, Ribosomal protein S12-like family; composed of prokaryotic 30S ribosomal protein S12, eukaryotic 40S ribosomal protein S23 and similar proteins

 Score = 72.0 bits (176), Expect = 1e-17
 Identities = 49/79 (62%), Positives = 57/79 (72%)

Query: 43  PLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLC 102
            L G PF +GV   V    PKKPNSA RK   VRL++G E+ AYIPGEGHNLQEH++VL 
Sbjct: 8   ALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLI 67

Query: 103 KVGRVKDLPGVKIKCVRGV 121
           + GRVKDLPGV+   VRGV
Sbjct: 68  RGGRVKDLPGVRYHIVRGV 86

S12 and S23 are located at the interface of the large and small ribosomal subunits, adjacent to the decoding center. They play an important role in translocation during the peptide elongation step of protein synthesis. They are also involved in important RNA and protein interactions. Ribosomal protein S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as a control element for the rRNA- and tRNA-driven movements of translocation. S23 interacts with domain III of the eukaryotic elongation factor 2 (eEF2), which catalyzes translocation. Mutations in S12 and S23 have been found to affect translational accuracy. Antibiotics such as streptomycin may also bind S12/S23 and cause the ribosome to misread the genetic code. Length = 95

>gnl|CDD|239465 cd03367, Ribosomal_S23, S12-like family, 40S ribosomal protein S23 subfamily; S23 is located at the interface of the large and small ribosomal subunits of eukaryotes, adjacent to the decoding center

 Score = 58.8 bits (143), Expect = 3e-12
 Identities = 42/99 (42%), Positives = 60/99 (60%), Gaps = 13/99 (13%)

Query: 34  HYKKRPPRQ-----PLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRL-STGKEMVAYI 87
            YKKR         PL G P AKG+VL+ +  + K+PNSA RKCV V+L   GK++ A++
Sbjct: 1   RYKKRHLGTKYKADPLGGAPHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFV 60

Query: 88  PGEG--HNLQEHNIVL-CKVGR----VKDLPGVKIKCVR 119
           PG+G  + + E++ VL    GR    V D+PGV+ K V+
Sbjct: 61  PGDGCLNFIDENDEVLVAGFGRKGRAVGDIPGVRFKVVK 99

It interacts with domain III of the eukaryotic elongation factor 2 (eEF2), which catalyzes the translocation of the growing peptidyl-tRNA to the P site to make room for the next aminoacyl-tRNA at the A (acceptor) site. Through its interaction with eEF2, S23 may play an important role in translocation. Also members of this subfamily are the archaeal 30S ribosomal S12 proteins. Prokaryotic S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as control element for the rRNA- and tRNA-driven movements of translocation. S12 and S23 are also implicated in translation accuracy. Antibiotics such as streptomycin bind S12/S23 and cause the ribosome to misread the genetic code. Length = 115

>gnl|CDD|185422 PTZ00067, PTZ00067, 40S ribosomal S23; Provisional

 Score = 54.4 bits (131), Expect = 2e-10
 Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 10/105 (9%)

Query: 27  DMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRL-STGKEMVA 85
           D   K  H   R    P  G   AKG+V++ +  + K+PNSA RKCV V+L   GK++ A
Sbjct: 24  DKEYKKAHLGTRYKANPFGGASHAKGIVVEKIGIEAKQPNSAIRKCVRVQLIKNGKKITA 83

Query: 86  YIPGEG--HNLQEHNIVLCK-VGR----VKDLPGVKIK--CVRGV 121
           ++P +G  + + E++ VL    GR    V D+PGV+ K   V GV
Sbjct: 84  FVPNDGCLNFINENDEVLVSGFGRSGHAVGDIPGVRFKVVKVAGV 128

Length = 143

>gnl|CDD|130055 TIGR00982, S23_S12_E_A, ribosomal protein S23 (S12)

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 36/100 (36%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 34  HYKKRPPR-----QPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRL-STGKEMVAYI 87
            +K+R  R      PL G P A+G+VL+ +  + ++PNSA RKCV V+L   GK + A+ 
Sbjct: 21  RFKRRMLRLKRKADPLEGAPMARGIVLEKVGVEARQPNSAIRKCVRVQLIKNGKVVTAFC 80

Query: 88  PGEG--HNLQEHNIVLC------KVGRVKDLPGVKIKCVR 119
           PG+G  + + EH+ V+       +   + D+PGV+ K V+
Sbjct: 81  PGDGAINFIDEHDEVIIEGIGGPRGRSMGDIPGVRYKVVK 120

This model represents the eukaryotic and archaeal homologs of bacterial ribosomal protein S12. This protein is known typically as S23 in eukaryotes and as either S12 or S23 in the Archaea [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 139

>gnl|CDD|235257 PRK04211, rps12P, 30S ribosomal protein S12P; Reviewed

 Score = 50.3 bits (121), Expect = 9e-09
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 11/86 (12%)

Query: 43  PLLGKPFAKGVVL-KVLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGEG--HNLQEHN 98
           PL G P A+G+VL KV ++  K+PNSA RKCV V+L   GK++ A+ PG+G  + + EH+
Sbjct: 41  PLEGAPMARGIVLEKVGVEA-KQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAINFIDEHD 99

Query: 99  IVLC-----KVGRVK-DLPGVKIKCV 118
            V+        GR   D+PGV+ K +
Sbjct: 100 EVVIEGIGGPKGRSMGDIPGVRYKVI 125

Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
CHL00051	123	rps12 ribosomal protein S12	100.0
PRK05163	124	rpsL 30S ribosomal protein S12; Validated	100.0
TIGR00981	124	rpsL_bact ribosomal protein S12, bacterial/organel	100.0
cd03368	108	Ribosomal_S12 S12-like family, 30S ribosomal prote	100.0
PF00164	122	Ribosom_S12_S23: Ribosomal protein S12/S23; InterP	100.0
COG0048	129	RpsL Ribosomal protein S12 [Translation, ribosomal	100.0
cd00319	95	Ribosomal_S12_like Ribosomal protein S12-like fami	100.0
KOG1750|consensus	139		100.0
PTZ00115	290	40S ribosomal protein S12; Provisional	100.0
cd03367	115	Ribosomal_S23 S12-like family, 40S ribosomal prote	100.0
TIGR00982	139	S23_S12_E_A ribosomal protein S23 (S12). This mode	100.0
PRK04211	145	rps12P 30S ribosomal protein S12P; Reviewed	100.0
PTZ00067	143	40S ribosomal S23; Provisional	100.0
KOG1749|consensus	143		99.97
COG0361	75	InfA Translation initiation factor 1 (IF-1) [Trans	94.03
TIGR00008	68	infA translation initiation factor IF-1. This fami	93.87
PF01176	65	eIF-1a: Translation initiation factor 1A / IF-1; I	87.3
cd05793	77	S1_IF1A S1_IF1A: Translation initiation factor IF1	86.91
smart00652	83	eIF1a eukaryotic translation initiation factor 1A.	85.95
PRK12442	87	translation initiation factor IF-1; Reviewed	85.36
PRK04012	100	translation initiation factor IF-1A; Provisional	82.2
cd04456	78	S1_IF1A_like S1_IF1A_like: Translation initiation	81.58

>CHL00051 rps12 ribosomal protein S12

Probab=100.00  E-value=1e-60  Score=362.00  Aligned_cols=113  Identities=43%  Similarity=0.616  Sum_probs=107.3

Q ss_pred             chhhHHHHhcCCCCCCCC-CCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCCCCCccceE
Q psy2262          22 TKTLWDMHMKGPHYKKRP-PRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIV  100 (137)
Q Consensus        22 M~TinQl~~~~~~~k~~~-k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGhnlqehs~V  100 (137)
                      |+|||||+++.|+++.++ +.++|++|||++|||+++++++|||||||+||||+|||+||++|+||||||||||||||+|
T Consensus         1 M~T~nQl~~~~r~~k~~~~k~~~L~g~Pq~kGv~lkv~~~~pKKPNSA~RKvarVrLsngk~v~AyIPGeGhnlqehs~V   80 (123)
T CHL00051          1 MPTIKQLIRNTRQPIRNKTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVV   80 (123)
T ss_pred             CCcHHhhhhcCCCCccccccCcccccCcccCeEEEEEEeccccCCChhheeEEEEEccCCCEEEEEcCCCCccccccCEE
Confidence            999999999887765554 5789999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCccCCCCCceEEEeeeecCCcccccccccC
Q psy2262         101 LCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQLT  134 (137)
Q Consensus       101 LVrGGrv~DLPGVkykvVRG~~D~~gv~~Rk~~~  134 (137)
                      ||||||++|||||+|++|||+|||+||.+|+++.
T Consensus        81 LvrGGrv~DlPGVrykvVRG~~D~~gv~~R~~~R  114 (123)
T CHL00051         81 LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGR  114 (123)
T ss_pred             EEeCCccCCCCCeeEEEEeeeecccccccccccc
Confidence            9999999999999999999999999999998763

>PRK05163 rpsL 30S ribosomal protein S12; Validated

Probab=100.00  E-value=2.7e-60  Score=360.11  Aligned_cols=113  Identities=47%  Similarity=0.670  Sum_probs=107.5

Q ss_pred             chhhHHHHhcCCCCCCCC-CCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCCCCCccceE
Q psy2262          22 TKTLWDMHMKGPHYKKRP-PRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIV  100 (137)
Q Consensus        22 M~TinQl~~~~~~~k~~~-k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGhnlqehs~V  100 (137)
                      |+|||||+++.|.++.++ +.++|++|||++|||+++++++|||||||+||||+|||+||++|+||||||||||||||+|
T Consensus         1 M~T~nQl~~~~r~~k~~~~k~~~l~~~Pq~kGv~l~v~~~~pKKPNSA~RKvarVrL~ngk~v~AyIPGeGhnlqehs~V   80 (124)
T PRK05163          1 MPTINQLVRKGRKSKVKKSKSPALNACPQKRGVCTRVYTTTPKKPNSALRKVARVRLTNGFEVTAYIPGEGHNLQEHSVV   80 (124)
T ss_pred             CCcHHHHhhcCCCCCcccccCcccccCcccCcEEEEEEecCccCCCchhheEEEEEeCCCCEEEEEcCCCCCCccccCEE
Confidence            999999999887766655 5689999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCccCCCCCceEEEeeeecCCcccccccccC
Q psy2262         101 LCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQLT  134 (137)
Q Consensus       101 LVrGGrv~DLPGVkykvVRG~~D~~gv~~Rk~~~  134 (137)
                      |||||+++|||||+|++|||+|||+||.+|+++.
T Consensus        81 LvrGGrv~DlPGVrykvVrG~~D~~gv~~R~~~R  114 (124)
T PRK05163         81 LIRGGRVKDLPGVRYHIVRGALDTAGVKDRKQGR  114 (124)
T ss_pred             EEeCCccCCCCCcEEEEeeeeecccccccccccc
Confidence            9999999999999999999999999999998764

>TIGR00981 rpsL_bact ribosomal protein S12, bacterial/organelle

Probab=100.00  E-value=6.5e-60  Score=358.00  Aligned_cols=113  Identities=48%  Similarity=0.685  Sum_probs=107.2

Q ss_pred             chhhHHHHhcCCCCCCCC-CCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCCCCCccceE
Q psy2262          22 TKTLWDMHMKGPHYKKRP-PRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIV  100 (137)
Q Consensus        22 M~TinQl~~~~~~~k~~~-k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGhnlqehs~V  100 (137)
                      |+|||||+++.|.++.++ +.++|++|||++|||+++++++|||||||+||||+|||+||++|+||||||||||||||+|
T Consensus         1 M~T~nQl~~~~r~kk~~~~k~~~l~g~Pq~kGi~l~~~~~~pKKPNSA~RKvarVrL~ngk~v~AyIPG~Ghnlqehs~V   80 (124)
T TIGR00981         1 MPTINQLIRKGRKKKKKKSKSPALEACPQKRGVCTRVYTTTPKKPNSALRKVARVRLTNGFEVTAYIPGEGHNLQEHSVV   80 (124)
T ss_pred             CCchHHhhhcCCCCccccccCcccccCCccCcEEEEEEeccccCCCchhheeEEEEeCCCCEEEEEcCCCCCCccccCEE
Confidence            999999999877666554 5689999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCccCCCCCceEEEeeeecCCcccccccccC
Q psy2262         101 LCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQLT  134 (137)
Q Consensus       101 LVrGGrv~DLPGVkykvVRG~~D~~gv~~Rk~~~  134 (137)
                      |||||+++|||||+|++|||+|||+||.+|+++.
T Consensus        81 LvrGGrv~DlPGVkykvVrG~~D~~gv~~R~~~R  114 (124)
T TIGR00981        81 LIRGGRVKDLPGVRYHIVRGALDTAGVKNRKQGR  114 (124)
T ss_pred             EEeCCccCCCCCeEEEEEeEeecccccccccccc
Confidence            9999999999999999999999999999998764

This model recognizes ribosomal protein S12 of Bacteria, mitochondria, and chloroplasts. The homologous ribosomal proteins of Archaea and Eukarya, termed S23 in Eukarya and S12 or S23 in Archaea, score below the trusted cutoff.

>cd03368 Ribosomal_S12 S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit interactions

Probab=100.00  E-value=1.4e-58  Score=344.05  Aligned_cols=107  Identities=57%  Similarity=0.823  Sum_probs=101.0

Q ss_pred             hhHHHHhcCCCCCCCC-CCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCCCCCccceEEE
Q psy2262          24 TLWDMHMKGPHYKKRP-PRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLC  102 (137)
Q Consensus        24 TinQl~~~~~~~k~~~-k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGhnlqehs~VLV  102 (137)
                      |||||++..+.+++++ +.++|++|||++|||+++++++|||||||+||||+|||+||++|+||||||||||||||+|||
T Consensus         1 T~nQl~~~~r~~k~~~~k~~~l~g~Pq~kGi~l~v~~~~pKKPNSA~RKvarV~L~ngk~v~AyIPG~Ghnlqehs~VLv   80 (108)
T cd03368           1 TINQLIRKGRKKKKKKSKSPALEGCPQKKGVCLKVYTTTPKKPNSALRKVARVRLSNGKEVTAYIPGEGHNLQEHSVVLV   80 (108)
T ss_pred             CccceeecCCCCccccccCCcccCCcccCcEEEEEEeccccCCChhheeeEEEEecCCCEEEEEcCCCCCCccccCEEEE
Confidence            7999998766655554 568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCccCCCCCceEEEeeeecCCcccccc
Q psy2262         103 KVGRVKDLPGVKIKCVRGVYDLPHVVKK  130 (137)
Q Consensus       103 rGGrv~DLPGVkykvVRG~~D~~gv~~R  130 (137)
                      ||||++|||||+|++|||+|||+||.+|
T Consensus        81 rGGrv~DlPGVkykvvRG~~D~~gv~~R  108 (108)
T cd03368          81 RGGRVKDLPGVRYHIVRGVLDLAGVKNR  108 (108)
T ss_pred             eCCccCCCCCeEEEEEeeecccccccCC
Confidence            9999999999999999999999999876

S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as a control element for the rRNA- and tRNA-driven movements of translocation. Antibiotics such as streptomycin bind S12 and cause the ribosome to misread the genetic code.

>PF00164 Ribosom_S12_S23: Ribosomal protein S12/S23; InterPro: IPR006032 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.6e-57  Score=343.81  Aligned_cols=111  Identities=55%  Similarity=0.792  Sum_probs=102.2

Q ss_pred             hhhHHHHhcCCCCCCCC-CCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCCCCCccceEE
Q psy2262          23 KTLWDMHMKGPHYKKRP-PRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVL  101 (137)
Q Consensus        23 ~TinQl~~~~~~~k~~~-k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGhnlqehs~VL  101 (137)
                      ||+|||++..+..+.++ +.++|+++||++|||+++++++|||||||+||||+|||+||++|+||||||||||||||+||
T Consensus         1 pT~nQl~r~~r~~~~~~~k~~~l~~~Pq~kGi~l~~~~~~pKKPNSA~RK~arVrL~n~k~v~AyIPg~Ghnlqehs~VL   80 (122)
T PF00164_consen    1 PTINQLIRKRRKKKKRKSKSPALGGCPQKKGICLKVVTVKPKKPNSAIRKVARVRLSNGKKVTAYIPGEGHNLQEHSVVL   80 (122)
T ss_dssp             -THHHHHHHHCHSSTCSHSSSSSTTSSEEEEEEEEEEEEEESTTTCSEEEEEEEEETTSEEEEEEC-SSSCCSTTTSEEE
T ss_pred             ChhHHHhhcCCCCCCccccCCccCCCCccCcEEeecccccccCccchhhhcceeeeccCceEEEEecCCcccccccceEE
Confidence            69999998876655444 67899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCccCCCCCceEEEeeeecCCccccccccc
Q psy2262         102 CKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQL  133 (137)
Q Consensus       102 VrGGrv~DLPGVkykvVRG~~D~~gv~~Rk~~  133 (137)
                      ||||+++|||||+|++|||+|||++|.+|+++
T Consensus        81 VrGgrv~DlPGVkykvVRG~~D~~gV~~r~~~  112 (122)
T PF00164_consen   81 VRGGRVGDLPGVKYKVVRGVYDVAGVSNRKKA  112 (122)
T ss_dssp             EEEESBTTSTTECEEBETTSTTCSSSTT-SSS
T ss_pred             EeccccCCCCceEEEEEeeccccccccHHHHh
Confidence            99999999999999999999999999988765

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S12 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S12 is known to be involved in the translation initiation step. It is a very basic protein of 120 to 150 amino-acid residues. S12 belongs to a family of ribosomal proteins which are grouped on the basis of sequence similarities. This protein is known typically as S12 in bacteria, S23 in eukaryotes and as either S12 or S23 in the Archaea []. Bacterial S12 molecules contain a conserved aspartic acid residue which undergoes a novel post-translational modification, beta-methylthiolation, to form the corresponding 3-methylthioaspartic acid.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZKQ_l 3BBN_L 3PYU_L 3D5A_L 3MS0_L 3MR8_L 3F1G_L 2OW8_m 3PYS_L 2QNH_m ....

>COG0048 RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.5e-56  Score=336.71  Aligned_cols=118  Identities=47%  Similarity=0.651  Sum_probs=110.2

Q ss_pred             ccccCCchhhHHHHhcCCCCCCCC-CCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCCCC
Q psy2262          16 VWVREKTKTLWDMHMKGPHYKKRP-PRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNL   94 (137)
Q Consensus        16 ~~~~~~M~TinQl~~~~~~~k~~~-k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGhnl   94 (137)
                      +|+...|+|+||++|.+|+....+ |.++|++|||++|||+++++++|||||||+||||||||+||++|+||||||||||
T Consensus         1 ~~a~~km~t~~q~~R~~rr~~~~k~Ks~~L~g~Pq~RGv~~~v~~~~pKkPNSAlRK~~RVrL~NG~~VtAyiPg~Gh~l   80 (129)
T COG0048           1 LFAARKMPTINQLVRKKRRSLGLKSKSPALEGAPQARGVCTRVYTVTPKKPNSALRKVARVRLINGKEVTAYIPGEGHNL   80 (129)
T ss_pred             CcccchhhhHHHHhhcccccccccccCCcccCCCccceEEEEEEecccCCCChhhheeEEEEeeCCcEEEEEcCCCCccc
Confidence            367889999999999876655444 6789999999999999999999999999999999999999999999999999999


Q ss_pred             CccceEEEecCccCCCCCceEEEeeeecCCccccccccc
Q psy2262          95 QEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQL  133 (137)
Q Consensus        95 qehs~VLVrGGrv~DLPGVkykvVRG~~D~~gv~~Rk~~  133 (137)
                      ||||+||||||+++|||||+||||||.+|.+++..|.+.
T Consensus        81 qEH~~Vli~G~~v~DlPGVRy~vvrg~~ds~~v~~r~~~  119 (129)
T COG0048          81 QEHSEVLIRGGRVKDLPGVRYKVVRGALDSLGVLDRGQK  119 (129)
T ss_pred             cccCEEEEecCccCCCCCceEEEEEEcchhhhhhhhccc
Confidence            999999999999999999999999999999999988765

>cd00319 Ribosomal_S12_like Ribosomal protein S12-like family; composed of prokaryotic 30S ribosomal protein S12, eukaryotic 40S ribosomal protein S23 and similar proteins

Probab=100.00  E-value=6.6e-53  Score=307.78  Aligned_cols=92  Identities=57%  Similarity=0.868  Sum_probs=89.6

Q ss_pred             CCCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCCCCCccceEEEecCccCCCCCceEEEe
Q psy2262          39 PPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCV  118 (137)
Q Consensus        39 ~k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGhnlqehs~VLVrGGrv~DLPGVkykvV  118 (137)
                      .|+++|+++||+||||+++++++|||||||+||||||||+||++|+||||||||||||||+|||||||++|||||+|++|
T Consensus         4 ~k~~~l~~~Pq~kGi~l~~~~~~pKkPNSA~RK~arV~L~ngk~v~ayIPg~Gh~lqeh~~VLvrGGr~~DlPGVrykvV   83 (95)
T cd00319           4 SKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIV   83 (95)
T ss_pred             cccCcccCCcccCeEEEEEEeccccCCChhhceEEEEEccCCCEEEEECCCCCcccccccEEEEeCCCcCCCCCcEEEEE
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcccccc
Q psy2262         119 RGVYDLPHVVKK  130 (137)
Q Consensus       119 RG~~D~~gv~~R  130 (137)
                      ||+|||+++.+|
T Consensus        84 rG~~d~~~v~~R   95 (95)
T cd00319          84 RGVYDAAGVKDR   95 (95)
T ss_pred             cccchhhhccCC
Confidence            999999999876

S12 and S23 are located at the interface of the large and small ribosomal subunits, adjacent to the decoding center. They play an important role in translocation during the peptide elongation step of protein synthesis. They are also involved in important RNA and protein interactions. Ribosomal protein S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as a control element for the rRNA- and tRNA-driven movements of translocation. S23 interacts with domain III of the eukaryotic elongation factor 2 (eEF2), which catalyzes translocation. Mutations in S12 and S23 have been found to affect translational accuracy. Antibiotics such as streptomycin may also bind S12/S23 and cause the ribosome to misread the genetic code.

>KOG1750|consensus

Probab=100.00  E-value=3.1e-51  Score=314.83  Aligned_cols=116  Identities=58%  Similarity=0.854  Sum_probs=108.5

Q ss_pred             ccccCCchhhHHHHhc-CCCCCCCC-CCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCCC
Q psy2262          16 VWVREKTKTLWDMHMK-GPHYKKRP-PRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHN   93 (137)
Q Consensus        16 ~~~~~~M~TinQl~~~-~~~~k~~~-k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGhn   93 (137)
                      .|++..|+|+||++++ ++.+|++. ++.+|+++||.+|||+++++++|||||||+||||+|+|+||.+|+|||||+|||
T Consensus        22 ~~~~~~m~T~nQliR~~~r~~kRr~~~~~~L~g~p~~kgvvl~v~t~~pkkPnsa~rK~~~vrlstg~~i~ayipg~ghn  101 (139)
T KOG1750|consen   22 SSASTMMATLNQLIRNGGRPPKRRPRKSPALDGCPQRKGVVLRVFTRKPKKPNSANRKCARVRLSTGREVTAYIPGIGHN  101 (139)
T ss_pred             hhhhhhhHhHHHHHhcCCCCCccCCcccccccCCcccccEEEEEEEecCCCCCccceeeEEEEecCchheeeeCCCcccc
Confidence            4788899999999999 55555554 568999999999999999999999999999999999999999999999999999


Q ss_pred             CCccceEEEecCccCCCCCceEEEeeeecCCccccccc
Q psy2262          94 LQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKT  131 (137)
Q Consensus        94 lqehs~VLVrGGrv~DLPGVkykvVRG~~D~~gv~~Rk  131 (137)
                      +|||+.|||||||++|+|||+|++|||+|||+||.+|.
T Consensus       102 lqehs~Vlvrggr~qdlpgvk~~~vRg~~d~~~V~~r~  139 (139)
T KOG1750|consen  102 LQEHSIVLVRGGRVQDLPGVKYHVVRGVYDLAGVVGRI  139 (139)
T ss_pred             ceeEEEEEEecceeccCcchhhhhhhhhhhhccccCCC
Confidence            99999999999999999999999999999999999873

>PTZ00115 40S ribosomal protein S12; Provisional

Probab=100.00  E-value=7.7e-50  Score=334.11  Aligned_cols=96  Identities=48%  Similarity=0.780  Sum_probs=92.8

Q ss_pred             CCCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCCCCCccceEEEecCccCCCCCceEEEe
Q psy2262          39 PPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCV  118 (137)
Q Consensus        39 ~k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGhnlqehs~VLVrGGrv~DLPGVkykvV  118 (137)
                      ++.++|++|||+||||+++++++|||||||+||||+|||+||++|+||||||||||||||+||||||+++|||||+||+|
T Consensus       115 ~k~paL~g~PQkKGIclkv~~~tPKKPNSA~RKvarVrLsNGk~VtAyIPGeGHnLQEHs~VLVRGGrvkDLPGVrYkvV  194 (290)
T PTZ00115        115 RRSKWLEGAPQKKGICVKVRVQTPRKPNSGLRKVARVRLSTGRTVTVYIPGIGHNLNTHSVVLVRGGRCKDVPGCNYKAV  194 (290)
T ss_pred             CcCccccCCcccCeEEEEeeecCCCCCCccccceEEEEecCCCEEEEEcCCCCcccccCCEEEEeCCCcCCCCCceEEEe
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcccccccccC
Q psy2262         119 RGVYDLPHVVKKTQLT  134 (137)
Q Consensus       119 RG~~D~~gv~~Rk~~~  134 (137)
                      ||+|||+||.+|+++.
T Consensus       195 RG~~D~~gV~~Rk~~R  210 (290)
T PTZ00115        195 RGVYDLLPVKNRARSR  210 (290)
T ss_pred             eeeccccccccccccc
Confidence            9999999999998753

>cd03367 Ribosomal_S23 S12-like family, 40S ribosomal protein S23 subfamily; S23 is located at the interface of the large and small ribosomal subunits of eukaryotes, adjacent to the decoding center

Probab=100.00  E-value=1.9e-43  Score=265.31  Aligned_cols=82  Identities=44%  Similarity=0.722  Sum_probs=78.9

Q ss_pred             CCCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEe-CCCCEEEEEecCCC--CCCCccceEEEec-----CccCCC
Q psy2262          39 PPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGEG--HNLQEHNIVLCKV-----GRVKDL  110 (137)
Q Consensus        39 ~k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrL-sngk~v~AyIPGeG--hnlqehs~VLVrG-----Grv~DL  110 (137)
                      .+.++|+++||++|||+++++++|||||||+|||||||| +||++|+|||||||  |||||||+|||||     |+++||
T Consensus        11 ~k~~~l~g~Pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~~ngk~itAyIPG~G~~~~lqeh~~VLV~G~G~~Gg~v~Dl   90 (115)
T cd03367          11 YKADPLGGAPHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPGDGCLNFIDENDEVLVAGFGRKGRAVGDI   90 (115)
T ss_pred             ccCCcccCCCccCeEEEEEeecCCCCCChhhceEEEEEEccCCeEEEEEeCCCCcccccccCCEEEEEecccCCCccCCC
Confidence            467899999999999999999999999999999999999 79999999999999  4999999999999     899999


Q ss_pred             CCceEEEeee
Q psy2262         111 PGVKIKCVRG  120 (137)
Q Consensus       111 PGVkykvVRG  120 (137)
                      |||+|++|+-
T Consensus        91 PGVrykvVkV  100 (115)
T cd03367          91 PGVRFKVVKV  100 (115)
T ss_pred             CceEEEEEEE
Confidence            9999999986

It interacts with domain III of the eukaryotic elongation factor 2 (eEF2), which catalyzes the translocation of the growing peptidyl-tRNA to the P site to make room for the next aminoacyl-tRNA at the A (acceptor) site. Through its interaction with eEF2, S23 may play an important role in translocation. Also members of this subfamily are the archaeal 30S ribosomal S12 proteins. Prokaryotic S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as control element for the rRNA- and tRNA-driven movements of translocation. S12 and S23 are also implicated in translation accuracy. Antibiotics such as streptomycin bind S12/S23 and cause the ribosome to misread the genetic code.

>TIGR00982 S23_S12_E_A ribosomal protein S23 (S12)

Probab=100.00  E-value=8.1e-43  Score=268.78  Aligned_cols=98  Identities=38%  Similarity=0.636  Sum_probs=89.4

Q ss_pred             CCCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEe-CCCCEEEEEecCCCC--CCCccceEEEec------CccCC
Q psy2262          39 PPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGEGH--NLQEHNIVLCKV------GRVKD  109 (137)
Q Consensus        39 ~k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrL-sngk~v~AyIPGeGh--nlqehs~VLVrG------Grv~D  109 (137)
                      .|.++|+++||++|||+++++++|||||||+||||+||| +||++|+||||||||  ||||||+|||+|      |+++|
T Consensus        31 ~K~~~l~g~Pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~~ngk~vtAyiPg~G~~~~lqeh~~VLV~G~gg~~gg~v~D  110 (139)
T TIGR00982        31 RKADPLEGAPMARGIVLEKVGVEARQPNSAIRKCVRVQLIKNGKVVTAFCPGDGAINFIDEHDEVIIEGIGGPRGRSMGD  110 (139)
T ss_pred             cccCcccCCCccCeEEEEEEeecCCCCCcccceEEEEEEccCCeEEEEEeCCCccccccccCCEEEEEecCccCCCCcCC
Confidence            356899999999999999999999999999999999999 899999999999998  799999999998      89999


Q ss_pred             CCCceEEEeee-ecCCcccccccccCCC
Q psy2262         110 LPGVKIKCVRG-VYDLPHVVKKTQLTPG  136 (137)
Q Consensus       110 LPGVkykvVRG-~~D~~gv~~Rk~~~~~  136 (137)
                      ||||+|++|+- -..|..+..-++++|-
T Consensus       111 lPGVrykvVkV~~vsL~~l~~gkkekp~  138 (139)
T TIGR00982       111 IPGVRYKVVKVNNVSLKELVKGKKEKPR  138 (139)
T ss_pred             CCceEEEEEEECCEeHHHHHhcccccCC
Confidence            99999999997 4556666666777773

This model represents the eukaryotic and archaeal homologs of bacterial ribosomal protein S12. This protein is known typically as S23 in eukaryotes and as either S12 or S23 in the Archaea.

>PRK04211 rps12P 30S ribosomal protein S12P; Reviewed

Probab=100.00  E-value=1.3e-42  Score=269.08  Aligned_cols=98  Identities=38%  Similarity=0.635  Sum_probs=89.2

Q ss_pred             CCCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEe-CCCCEEEEEecCCCC--CCCccceEEEec------CccCC
Q psy2262          39 PPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGEGH--NLQEHNIVLCKV------GRVKD  109 (137)
Q Consensus        39 ~k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrL-sngk~v~AyIPGeGh--nlqehs~VLVrG------Grv~D  109 (137)
                      .+.++|+++||++|||+++++++|||||||+||||+||| +||++|+||||||||  ||||||+|||+|      |+++|
T Consensus        37 ~K~~~l~g~Pq~kGivl~~~~v~pKKPNSA~RK~arV~L~~Ngk~vtAyIPg~G~~~~lqEh~~VLV~G~gg~~gg~v~D  116 (145)
T PRK04211         37 EKADPLEGAPMARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAINFIDEHDEVVIEGIGGPKGRSMGD  116 (145)
T ss_pred             cccCcccCCCccCeEEEEEeeecCCCCchhhceeEEEEEccCCeEEEEEeCCCccccccccCCEEEEeecCccCCCCcCC
Confidence            366899999999999999999999999999999999999 899999999999998  899999999998      79999


Q ss_pred             CCCceEEEeee-ecCCcccccccccCCC
Q psy2262         110 LPGVKIKCVRG-VYDLPHVVKKTQLTPG  136 (137)
Q Consensus       110 LPGVkykvVRG-~~D~~gv~~Rk~~~~~  136 (137)
                      ||||+|+||+- -.-|..+..-++++|-
T Consensus       117 lPGVrykvVkV~~vsL~~l~~gkkekp~  144 (145)
T PRK04211        117 IPGVRYKVIKVNGVSLKELVKGKKEKPV  144 (145)
T ss_pred             CCceEEEEEEECCEeHHHHHhcccccCC
Confidence            99999999986 4555566666777773

>PTZ00067 40S ribosomal S23; Provisional

Probab=100.00  E-value=2.3e-42  Score=267.22  Aligned_cols=98  Identities=37%  Similarity=0.585  Sum_probs=89.7

Q ss_pred             CCCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEeC-CCCEEEEEecCCC--CCCCccceEEEec-C----ccCCC
Q psy2262          39 PPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLS-TGKEMVAYIPGEG--HNLQEHNIVLCKV-G----RVKDL  110 (137)
Q Consensus        39 ~k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLs-ngk~v~AyIPGeG--hnlqehs~VLVrG-G----rv~DL  110 (137)
                      .|.++|+++||++|||+++++++|||||||+||||+|||+ ||++|+|||||||  |||||||+|||+| |    +++||
T Consensus        36 ~k~~pl~g~pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~vtAyiPg~G~lh~lqEh~~VLV~G~Gr~g~~v~Dl  115 (143)
T PTZ00067         36 YKANPFGGASHAKGIVVEKIGIEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFINENDEVLVSGFGRSGHAVGDI  115 (143)
T ss_pred             cccCcccCCCccceEEEEEEeecCCCCChhhceEEEEEEccCCcEEEEEeCCCCcccccccCCEEEEEecCcCCCccCCC
Confidence            3668999999999999999999999999999999999996 9999999999999  9999999999999 6    79999


Q ss_pred             CCceEEEeee-ecCCcccccccccCCC
Q psy2262         111 PGVKIKCVRG-VYDLPHVVKKTQLTPG  136 (137)
Q Consensus       111 PGVkykvVRG-~~D~~gv~~Rk~~~~~  136 (137)
                      |||+|++||- -..|..+..-++++|-
T Consensus       116 PGVrykvVrV~~vsL~~l~kgkkekp~  142 (143)
T PTZ00067        116 PGVRFKVVKVAGVSLLALYKGKKEKPR  142 (143)
T ss_pred             CceEEEEEEECCEeHHHHHhcccccCC
Confidence            9999999997 4566677777777774

>KOG1749|consensus

Probab=99.97  E-value=2.1e-31  Score=204.63  Aligned_cols=97  Identities=37%  Similarity=0.594  Sum_probs=90.1

Q ss_pred             CCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEe-CCCCEEEEEecCCCC--CCCccceEEEec-----CccCCCC
Q psy2262          40 PRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGEGH--NLQEHNIVLCKV-----GRVKDLP  111 (137)
Q Consensus        40 k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrL-sngk~v~AyIPGeGh--nlqehs~VLVrG-----Grv~DLP  111 (137)
                      |.++|+|.||+|||||+.+++++||||||+|||+|||| +||++|+||+|.+||  +++|+|+|||.|     ..++|+|
T Consensus        37 K~~pfggashAKgIvLEKigVEAKQPNSAiRKcvRvQLIkngKKITafVp~dgcln~ieendevlv~gfgrkg~avgdip  116 (143)
T KOG1749|consen   37 KSSPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIP  116 (143)
T ss_pred             hcCCCCCccccceeEEEeeeeeccCCcHHHhhheeeeeeeCCceEEEEecCCCceeeeccCCeeeeeccCccCccccCCC
Confidence            66899999999999999999999999999999999999 999999999999998  999999999997     6799999


Q ss_pred             CceEEEeee-ecCCcccccccccCCC
Q psy2262         112 GVKIKCVRG-VYDLPHVVKKTQLTPG  136 (137)
Q Consensus       112 GVkykvVRG-~~D~~gv~~Rk~~~~~  136 (137)
                      ||+|+|++- -..|..+..-++++|.
T Consensus       117 gvrfkvvkv~~vsl~alf~~kkekpr  142 (143)
T KOG1749|consen  117 GVRFKVVKVSGVSLLALFKEKKEKPR  142 (143)
T ss_pred             ceEEEEEEEcCcChhhhhhccccCCC
Confidence            999999987 4667778888888884

>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]

Probab=94.03  E-value=0.097  Score=37.25  Aligned_cols=46  Identities=28%  Similarity=0.424  Sum_probs=35.9

Q ss_pred             ccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCC--C--CCCccceEEEec
Q psy2262          49 FAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEG--H--NLQEHNIVLCKV  104 (137)
Q Consensus        49 q~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeG--h--nlqehs~VLVrG  104 (137)
                      +.-|+|++.+.      |.    -.+|+|.||.++.|+|||-.  |  -+-+-|.|+|+=
T Consensus         8 e~~g~V~e~L~------~~----~f~v~~edg~~~~ahI~GKmr~~~i~I~~GD~V~Ve~   57 (75)
T COG0361           8 EMEGTVIEMLP------NG----RFRVELENGHERLAHISGKMRKNRIRILPGDVVLVEL   57 (75)
T ss_pred             EEEEEEEEecC------CC----EEEEEecCCcEEEEEccCcchheeEEeCCCCEEEEEe
Confidence            45566666653      32    36799999999999999998  4  588999999974

>TIGR00008 infA translation initiation factor IF-1

Probab=93.87  E-value=0.13  Score=35.90  Aligned_cols=45  Identities=29%  Similarity=0.419  Sum_probs=33.9

Q ss_pred             cceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCC----CCCccceEEEec
Q psy2262          50 AKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGH----NLQEHNIVLCKV  104 (137)
Q Consensus        50 ~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGh----nlqehs~VLVrG  104 (137)
                      ..|+|++.+      ||.    -.+|+|.||.++.|||||-=-    -+.+.|.|+|+=
T Consensus         7 ~~G~V~e~L------~~~----~f~V~l~ng~~vla~i~GKmr~~rI~I~~GD~V~Ve~   55 (68)
T TIGR00008         7 MEGKVTESL------PNA----MFRVELENGHEVLAHISGKIRMHYIRILPGDKVKVEL   55 (68)
T ss_pred             EEEEEEEEC------CCC----EEEEEECCCCEEEEEecCcchhccEEECCCCEEEEEE
Confidence            346666654      343    478999999999999999642    578888888873

This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).

>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins

Probab=87.30  E-value=0.38  Score=32.13  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=25.1

Q ss_pred             eEEEEeCCCCEEEEEecCCCC---CCCccceEEEec
Q psy2262          72 CVLVRLSTGKEMVAYIPGEGH---NLQEHNIVLCKV  104 (137)
Q Consensus        72 vakVrLsngk~v~AyIPGeGh---nlqehs~VLVrG  104 (137)
                      -.+|+|.||.+++|+|||-=+   .+.+.|.|+|.=
T Consensus        17 ~~~V~~~dg~~~l~~i~gK~r~~iwI~~GD~V~V~~   52 (65)
T PF01176_consen   17 LFEVECEDGEERLARIPGKFRKRIWIKRGDFVLVEP   52 (65)
T ss_dssp             EEEEEETTSEEEEEEE-HHHHTCC---TTEEEEEEE
T ss_pred             EEEEEeCCCCEEEEEeccceeeeEecCCCCEEEEEe
Confidence            378999999999999999743   789999999974

It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.

>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain

Probab=86.91  E-value=1.1  Score=31.38  Aligned_cols=33  Identities=30%  Similarity=0.324  Sum_probs=28.1

Q ss_pred             eEEEEeCCCCEEEEEecCCCC---CCCccceEEEec
Q psy2262          72 CVLVRLSTGKEMVAYIPGEGH---NLQEHNIVLCKV  104 (137)
Q Consensus        72 vakVrLsngk~v~AyIPGeGh---nlqehs~VLVrG  104 (137)
                      ..+|.|.||.+++|+|||-=.   .+.+.|.|+|+-
T Consensus        14 ~~~V~~~~g~~~la~i~gK~rk~iwI~~GD~V~Ve~   49 (77)
T cd05793          14 RLEVRCFDGKKRLCRIRGKMRKRVWINEGDIVLVAP   49 (77)
T ss_pred             EEEEEECCCCEEEEEEchhhcccEEEcCCCEEEEEe
Confidence            468899999999999999753   788889999873

S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.

>smart00652 eIF1a eukaryotic translation initiation factor 1A

Probab=85.95  E-value=1.3  Score=31.30  Aligned_cols=33  Identities=33%  Similarity=0.412  Sum_probs=28.2

Q ss_pred             eEEEEeCCCCEEEEEecCCCC---CCCccceEEEec
Q psy2262          72 CVLVRLSTGKEMVAYIPGEGH---NLQEHNIVLCKV  104 (137)
Q Consensus        72 vakVrLsngk~v~AyIPGeGh---nlqehs~VLVrG  104 (137)
                      -.+|+|.||.+++|+|||-=.   .+.+.|.|+|+-
T Consensus        19 ~~~V~~~dG~~~la~ipgK~Rk~iwI~~GD~VlVe~   54 (83)
T smart00652       19 RLEVMCADGKERLARIPGKMRKKVWIRRGDIVLVDP   54 (83)
T ss_pred             EEEEEECCCCEEEEEEchhhcccEEEcCCCEEEEEe
Confidence            467899999999999999653   788999999974

>PRK12442 translation initiation factor IF-1; Reviewed

Probab=85.36  E-value=2.2  Score=31.28  Aligned_cols=45  Identities=33%  Similarity=0.462  Sum_probs=32.8

Q ss_pred             cceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCC--C--CCCccceEEEec
Q psy2262          50 AKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEG--H--NLQEHNIVLCKV  104 (137)
Q Consensus        50 ~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeG--h--nlqehs~VLVrG  104 (137)
                      ..|+|++.+      ||.    -.+|+|.||.+|+|||+|-=  |  -+-+.|.|+|+=
T Consensus         9 ~~G~V~e~L------p~~----~frV~LenG~~vla~isGKmR~~rIrIl~GD~V~VE~   57 (87)
T PRK12442          9 LDGIVDEVL------PDS----RFRVTLENGVEVGAYASGRMRKHRIRILAGDRVTLEL   57 (87)
T ss_pred             EEEEEEEEC------CCC----EEEEEeCCCCEEEEEeccceeeeeEEecCCCEEEEEE
Confidence            456666665      444    57899999999999999974  2  466677777763

>PRK04012 translation initiation factor IF-1A; Provisional

Probab=82.20  E-value=2.3  Score=31.31  Aligned_cols=51  Identities=29%  Similarity=0.362  Sum_probs=38.9

Q ss_pred             CCCCCCccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCC---CCCccceEEEe
Q psy2262          43 PLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGH---NLQEHNIVLCK  103 (137)
Q Consensus        43 ~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGh---nlqehs~VLVr  103 (137)
                      ++-..-|.-|.|++..+-          -..+|.|.||.+++|+|||-=.   .+.+.|.|+|+
T Consensus        16 ~~p~e~e~~g~V~~~lG~----------~~~~V~~~dG~~~la~i~GK~Rk~IwI~~GD~VlVe   69 (100)
T PRK04012         16 PMPEEGEVFGVVEQMLGA----------NRVRVRCMDGVERMGRIPGKMKKRMWIREGDVVIVA   69 (100)
T ss_pred             cCCCCCEEEEEEEEEcCC----------CEEEEEeCCCCEEEEEEchhhcccEEecCCCEEEEE
Confidence            344556677777776542          1578999999999999999753   77888888886

>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain

Probab=81.58  E-value=2.7  Score=29.51  Aligned_cols=33  Identities=15%  Similarity=0.226  Sum_probs=27.9

Q ss_pred             eEEEEeCCCCEEEEEecCCC---CCCCccceEEEec
Q psy2262          72 CVLVRLSTGKEMVAYIPGEG---HNLQEHNIVLCKV  104 (137)
Q Consensus        72 vakVrLsngk~v~AyIPGeG---hnlqehs~VLVrG  104 (137)
                      ..+|++.||.+++|+|||-=   --+.+.|.|+|+=
T Consensus        14 ~~~V~~~dg~~~l~~i~gK~Rk~iwI~~GD~VlV~~   49 (78)
T cd04456          14 RHEVECADGQRRLVSIPGKLRKNIWIKRGDFLIVDP   49 (78)
T ss_pred             EEEEEECCCCEEEEEEchhhccCEEEcCCCEEEEEe
Confidence            46899999999999999954   2788899999963

IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	137
1fjg_L	135	Structure Of The Thermus Thermophilus 30s Ribosomal		3e-18
3d5a_L	134	Structural Basis For Translation Termination On The		3e-18
1i94_L	131	Crystal Structures Of The Small Ribosomal Subunit W		3e-18
2f4v_L	132	30s Ribosome + Designer Antibiotic Length = 132		3e-18
4g5k_O	128	Crystal Structure Of The 70s Ribosome With Tetracyc		3e-18
3fic_L	125	T. Thermophilus 70s Ribosome In Complex With Mrna,		3e-18
1pn7_O	124	Coordinates Of S12, L11 Proteins And P-Trna, From T		3e-18
4dr1_L	135	Crystal Structure Of The Apo 30s Ribosomal Subunit		2e-17
3bbn_L	123	Homology Model For The Spinach Chloroplast 30s Subu		2e-15
1zn1_L	97	Coordinates Of Rrf Fitted Into Cryo-Em Map Of The 7		1e-14
1p6g_L	123	Real Space Refined Coordinates Of The 30s Subunit F		1e-14
1vs5_L	124	Crystal Structure Of The Bacterial Ribosome From Es		1e-14
2gy9_L	101	Structure Of The 30s Subunit Of A Pre-Translocation		2e-14
3zey_S	143	High-resolution Cryo-electron Microscopy Structure		1e-04
3iz6_L	142	Localization Of The Small Subunit Ribosomal Protein		7e-04
2zkq_l	143	Structure Of A Mammalian Ribosomal 40s Subunit With		9e-04

>pdb|1FJG|L Chain L, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 135

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 24  TLWDMHMKGPHYKKRPPRQPLL-GKPFAXXXXXXXXXXXXXXXNSANRKCVLVRLSTGKE 82
           T+  +  KG    ++  + P L G PF                NSA RK   VRL++G E
Sbjct: 6   TINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYE 65
Query: 83  MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHV 127
           + AYIPGEGHNLQEH++VL + GRVKDLPGV+   VRGVYD   V
Sbjct: 66  VTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGV 110

>pdb|3D5A|L Chain L, Structural Basis For Translation Termination On The 70s Ribosome. This File Contains The 30s Subunit, Release Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 134

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 24  TLWDMHMKGPHYKKRPPRQPLL-GKPFAXXXXXXXXXXXXXXXNSANRKCVLVRLSTGKE 82
           T+  +  KG    ++  + P L G PF                NSA RK   VRL++G E
Sbjct: 5   TINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYE 64
Query: 83  MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHV 127
           + AYIPGEGHNLQEH++VL + GRVKDLPGV+   VRGVYD   V
Sbjct: 65  VTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGV 109

>pdb|1I94|L Chain L, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 131

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 24  TLWDMHMKGPHYKKRPPRQPLL-GKPFAXXXXXXXXXXXXXXXNSANRKCVLVRLSTGKE 82
           T+  +  KG    ++  + P L G PF                NSA RK   VRL++G E
Sbjct: 2   TINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYE 61
Query: 83  MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHV 127
           + AYIPGEGHNLQEH++VL + GRVKDLPGV+   VRGVYD   V
Sbjct: 62  VTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGV 106

>pdb|2F4V|L Chain L, 30s Ribosome + Designer Antibiotic Length = 132

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 24  TLWDMHMKGPHYKKRPPRQPLL-GKPFAXXXXXXXXXXXXXXXNSANRKCVLVRLSTGKE 82
           T+  +  KG    ++  + P L G PF                NSA RK   VRL++G E
Sbjct: 3   TINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYE 62
Query: 83  MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHV 127
           + AYIPGEGHNLQEH++VL + GRVKDLPGV+   VRGVYD   V
Sbjct: 63  VTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGV 107

>pdb|4G5K|O Chain O, Crystal Structure Of The 70s Ribosome With Tetracycline. This Entry Contains The 30s Subunit Of Molecule A. Length = 128

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 24  TLWDMHMKGPHYKKRPPRQPLL-GKPFAXXXXXXXXXXXXXXXNSANRKCVLVRLSTGKE 82
           T+  +  KG    ++  + P L G PF                NSA RK   VRL++G E
Sbjct: 3   TINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYE 62
Query: 83  MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHV 127
           + AYIPGEGHNLQEH++VL + GRVKDLPGV+   VRGVYD   V
Sbjct: 63  VTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGV 107

>pdb|3FIC|L Chain L, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 125

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 24  TLWDMHMKGPHYKKRPPRQPLL-GKPFAXXXXXXXXXXXXXXXNSANRKCVLVRLSTGKE 82
           T+  +  KG    ++  + P L G PF                NSA RK   VRL++G E
Sbjct: 2   TINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYE 61
Query: 83  MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHV 127
           + AYIPGEGHNLQEH++VL + GRVKDLPGV+   VRGVYD   V
Sbjct: 62  VTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGV 106

>pdb|1PN7|O Chain O, Coordinates Of S12, L11 Proteins And P-Trna, From The 70s X- Ray Structure Aligned To The 70s Cryo-Em Map Of E.Coli Ribosome Length = 124

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 24  TLWDMHMKGPHYKKRPPRQPLL-GKPFAXXXXXXXXXXXXXXXNSANRKCVLVRLSTGKE 82
           T+  +  KG    ++  + P L G PF                NSA RK   VRL++G E
Sbjct: 2   TINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYE 61
Query: 83  MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHV 127
           + AYIPGEGHNLQEH++VL + GRVKDLPGV+   VRGVYD   V
Sbjct: 62  VTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGV 106

>pdb|4DR1|L Chain L, Crystal Structure Of The Apo 30s Ribosomal Subunit From Thermus Thermophilus (hb8) Length = 135

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 24  TLWDMHMKGPHYKKRPPRQPLL-GKPFAXXXXXXXXXXXXXXXNSANRKCVLVRLSTGKE 82
           T+  +  KG    ++  + P L G PF                NSA RK   VRL++G E
Sbjct: 6   TINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYE 65
Query: 83  MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHV 127
           + AYIPGEGHNLQEH++VL + GRVK LPGV+   VRGVYD   V
Sbjct: 66  VTAYIPGEGHNLQEHSVVLIRGGRVKXLPGVRYHIVRGVYDAAGV 110

>pdb|3BBN|L Chain L, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 123

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 47/67 (70%)
Query: 66  NSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLP 125
           NSA RK   VRL++G E+ AYIPG GHNLQEH++VL + GRVKDLPGV+   VRG  D  
Sbjct: 46  NSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAV 105
Query: 126 HVVKKTQ 132
            V  + Q
Sbjct: 106 GVKDRQQ 112

>pdb|1ZN1|L Chain L, Coordinates Of Rrf Fitted Into Cryo-Em Map Of The 70s Post- Termination Complex Length = 97

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 46/67 (68%)
Query: 66  NSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLP 125
           NSA RK   VRL+ G E+ +YI GEGHNLQEH+++L + GRVKDLPGV+   VRG  D  
Sbjct: 19  NSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGALDCS 78
Query: 126 HVVKKTQ 132
            V  + Q
Sbjct: 79  GVKDRKQ 85

>pdb|1P6G|L Chain L, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 123

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 46/67 (68%)
Query: 66  NSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLP 125
           NSA RK   VRL+ G E+ +YI GEGHNLQEH+++L + GRVKDLPGV+   VRG  D  
Sbjct: 45  NSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGALDCS 104
Query: 126 HVVKKTQ 132
            V  + Q
Sbjct: 105 GVKDRKQ 111

>pdb|1VS5|L Chain L, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 124

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 46/67 (68%)
Query: 66  NSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLP 125
           NSA RK   VRL+ G E+ +YI GEGHNLQEH+++L + GRVKDLPGV+   VRG  D  
Sbjct: 46  NSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGALDCS 105
Query: 126 HVVKKTQ 132
            V  + Q
Sbjct: 106 GVKDRKQ 112

>pdb|2GY9|L Chain L, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 101

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 46/67 (68%)
Query: 66  NSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLP 125
           NSA RK   VRL+ G E+ +YI GEGHNLQEH+++L + GRVKDLPGV+   VRG  D  
Sbjct: 24  NSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGALDCS 83
Query: 126 HVVKKTQ 132
            V  + Q
Sbjct: 84  GVKDRKQ 90

>pdb|3ZEY|S Chain S, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 143

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 18  VREKTKTLW-DMHMKGPHYKKRPPRQPLLGKPFAXXXXXXXXXXXXXXXNSANRKCVLVR 76
           VR + K  W D   K  H        P  G   A               NSA RKCV V+
Sbjct: 14  VRLRRKNRWADKGWKKSHTFVAQKANPFGGSSHAKGIVLEKIGVGAKQPNSAIRKCVRVQ 73
Query: 77  L-STGKEMVAYIPGEG--HNLQEHNIVLCK-VGR----VKDLPGVKIKCVR----GVYDL 124
           L    K+++A++P +G  H ++E++ VL    GR    V D+PGV+ K V+    G+Y L
Sbjct: 74  LIKNDKKIIAFVPNDGCLHFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVSSVGLYAL 133

>pdb|3IZ6|L Chain L, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 142

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 41  RQPLLGKPFAXXXXXXXXXXXXXXXNSANRKCVLVRL-STGKEMVAYIPGEG-HNLQEHN 98
           ++P  G   A               NSA RKC  V+L   GK++ A++P +G  N  E N
Sbjct: 37  KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEEN 96
Query: 99  --IVLCKVGR----VKDLPGVKIKCVR 119
             +++   GR    V D+PGV+ K V+
Sbjct: 97  DEVLIAGFGRKGHAVGDIPGVRFKVVK 123

>pdb|2ZKQ|LL Chain l, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 143

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 27  DMHMKGPHYKKRPPRQPLLGKPFAXXXXXXXXXXXXXXXNSANRKCVLVRL-STGKEMVA 85
           D   K  H        P  G   A               NSA RKCV V+L   GK++ A
Sbjct: 24  DKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITA 83
Query: 86  YIPGEGH-NLQEHN--IVLCKVGR----VKDLPGVKIKCVR 119
           ++P +G  N  E N  +++   GR    V D+PGV+ K V+
Sbjct: 84  FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
2vqe_L	135	30S ribosomal protein S12, 30S ribosomal protein S	1e-26
2xzm_L	142	40S ribosomal protein S12; ribosome, translation;	3e-26
3u5c_X	145	RP37, S28, YS14, 40S ribosomal protein S23-A; tran	6e-24

>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ... Length = 135

 Score = 95.9 bits (238), Expect = 1e-26
 Identities = 56/110 (50%), Positives = 71/110 (64%), Gaps = 1/110 (0%)

Query: 24  TLWDMHMKGPHYKKRPPRQPLL-GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
           T+  +  KG    ++  + P L G PF +GV   V    PKKPNSA RK   VRL++G E
Sbjct: 6   TINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYE 65

Query: 83  MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
           + AYIPGEGHNLQEH++VL + GRVKDLPGV+   VRGVYD   V  + +
Sbjct: 66  VTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKK 115

>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L* Length = 142

 Score = 95.1 bits (236), Expect = 3e-26
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 14/116 (12%)

Query: 31  KGPHYKKRPPRQ----PLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLS-TGKEMVA 85
               + KR        P +G   AKG+V + +  + K+PNSA RKCV V L    K++ A
Sbjct: 25  ADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAA 84

Query: 86  YIPGEG--HNLQEHNIVLC-----KVGRVKDLPGVKIK--CVRGVYDLPHVVKKTQ 132
           ++P +G  + L E++ VL      +   V D+PGV+ K  CV+G+  L     K +
Sbjct: 85  FVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKE 140

>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L Length = 145

 Score = 89.4 bits (221), Expect = 6e-24
 Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 8/110 (7%)

Query: 21  KTKTLWDMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRL-ST 79
           +     + + K           P  G   AKG+VL+ L  + K+PNSA RKCV V+L   
Sbjct: 20  RNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKN 79

Query: 80  GKEMVAYIPGEG--HNLQEHNIVL----CKVGRVK-DLPGVKIKCVRGVY 122
           GK++ A++P +G  + + E++ VL     + G+ K D+PGV+ K V+   
Sbjct: 80  GKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSG 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
2vqe_L	135	30S ribosomal protein S12, 30S ribosomal protein S	100.0
3u5c_X	145	RP37, S28, YS14, 40S ribosomal protein S23-A; tran	100.0
2xzm_L	142	40S ribosomal protein S12; ribosome, translation;	100.0
3j20_N	147	30S ribosomal protein S12P; archaea, archaeal, KIN	100.0
2dgy_A	111	MGC11102 protein; EIF-1A, structural genomics, NPP	87.94
1d7q_A	143	Translation initiation factor 1A; OB-fold, beta-ba	80.75

>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...

Probab=100.00  E-value=4.1e-60  Score=362.10  Aligned_cols=113  Identities=49%  Similarity=0.733  Sum_probs=106.2

Q ss_pred             CchhhHHHHhcCCCCCCCC-CCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCCCCCccce
Q psy2262          21 KTKTLWDMHMKGPHYKKRP-PRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNI   99 (137)
Q Consensus        21 ~M~TinQl~~~~~~~k~~~-k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGhnlqehs~   99 (137)
                      .|+|||||++++|.+++++ +.++|++|||++|||+++++++|||||||+||||||||+||++|+||||||||||||||+
T Consensus         3 ~M~TinQl~r~~r~~~~~k~k~~~l~g~Pq~kGv~l~v~~~~pKKPNSA~RK~arVrL~ngk~VtAyIPG~GhnlqEhs~   82 (135)
T 2vqe_L            3 ALPTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSV   82 (135)
T ss_dssp             --CCHHHHHHTCCCCCCCCCSCCCSSSCSEEEEEESCCCEECCCTTCCCCEECCEEEETTSCEEEEECCSSCCCCCTTCE
T ss_pred             ccccHHHHhccCCCCCCccCcCCcccCCCCcCeEEEEEEecCCCCCchhheeEEEEEcCCCCEEEEEcCCCCCccCcCCE
Confidence            5999999999987766555 568999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCccCCCCCceEEEeeeecCCccccccccc
Q psy2262         100 VLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQL  133 (137)
Q Consensus       100 VLVrGGrv~DLPGVkykvVRG~~D~~gv~~Rk~~  133 (137)
                      |||||||++|||||+||+|||+|||+||.+|+++
T Consensus        83 VLVrGgrv~DlPGVrykvVrG~lD~~gv~~R~~~  116 (135)
T 2vqe_L           83 VLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKS  116 (135)
T ss_dssp             EEEEECCCTTSTTCCEEECTTSTTSCCCTTCCSS
T ss_pred             EEEcCCCcCCCCCeeEEEEeEeecCccccccccc
Confidence            9999999999999999999999999999999876

>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3j2k_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L

Probab=100.00  E-value=7.1e-44  Score=275.05  Aligned_cols=97  Identities=37%  Similarity=0.567  Sum_probs=88.3

Q ss_pred             CCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEe-CCCCEEEEEecCCCC--CCCccceEEEec-----CccCCCC
Q psy2262          40 PRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGEGH--NLQEHNIVLCKV-----GRVKDLP  111 (137)
Q Consensus        40 k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrL-sngk~v~AyIPGeGh--nlqehs~VLVrG-----Grv~DLP  111 (137)
                      |+++|+++||++|||+++++++|||||||+|||||||| +||++|+||||||||  ||||||+|||+|     |+++|||
T Consensus        39 K~~~l~g~pq~kGivl~~~~~~pKkPNSA~RK~arV~L~kngk~vtAyIPg~G~l~~lqEh~~VLV~G~G~~Gg~v~DlP  118 (145)
T 3u5c_X           39 KSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIP  118 (145)
T ss_dssp             HSSSSCSSSEEEEEEEEEEBCBCCTTCCCBCCEEEEEETTTCCEEEEECCSSSCGGGCCTTCEEEEECCSSSSSCCSSST
T ss_pred             ccCccCCCCccCeEEEEEeecccCCCCccceeEEEEEEccCCCEEEEEeCCCCccccCCcCCEEEEEeccccCCccCCCC
Confidence            56899999999999999999999999999999999999 699999999999998  999999999999     8999999


Q ss_pred             CceEEEeeee-cCCcccccccccCCC
Q psy2262         112 GVKIKCVRGV-YDLPHVVKKTQLTPG  136 (137)
Q Consensus       112 GVkykvVRG~-~D~~gv~~Rk~~~~~  136 (137)
                      ||+|+|||+. .-|..+..-++++|-
T Consensus       119 GVrykvVrv~~vsl~al~kgkkekp~  144 (145)
T 3u5c_X          119 GVRFKVVKVSGVSLLALWKEKKEKPR  144 (145)
T ss_dssp             TCCEEEEESTTTCHHHHHHTSCCCCC
T ss_pred             ceeEEEEEECCeeHHHHHhccccCCC
Confidence            9999999994 344466666667763

>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*

Probab=100.00  E-value=2.2e-43  Score=271.54  Aligned_cols=79  Identities=41%  Similarity=0.620  Sum_probs=77.7

Q ss_pred             CCCCCCCccceEEEEeeecCCCCCCccccceEEEEe-CCCCEEEEEecCCCC--CCCccceEEEec-----CccCCCCCc
Q psy2262          42 QPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGEGH--NLQEHNIVLCKV-----GRVKDLPGV  113 (137)
Q Consensus        42 ~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrL-sngk~v~AyIPGeGh--nlqehs~VLVrG-----Grv~DLPGV  113 (137)
                      ++|+++||++|||+++++++|||||||+|||||||| +||++|+||||||||  ||||||+|||+|     |+++|||||
T Consensus        40 ~pl~g~pq~kGIvl~~~~~~pKkPNSA~RK~arVqL~kNgk~vtAyIPg~G~l~~lqEh~~VLVrG~G~~ggrv~DlPGV  119 (142)
T 2xzm_L           40 NPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGV  119 (142)
T ss_dssp             STTTTCSEEEEEEEEEEEEECCTTCCCEEEEEEEEETTTCCEEEEECCSSSGGGTCCTTCEEEEEESSSSSSCCTTCSSC
T ss_pred             CcccCCCccceEEEEEEecccCCCCcccccEEEEEEecCCeEEEEEeCCCCcccccccCCEEEEEecccCCCccCCCCCc
Confidence            899999999999999999999999999999999999 799999999999997  999999999999     999999999


Q ss_pred             eEEEeee
Q psy2262         114 KIKCVRG  120 (137)
Q Consensus       114 kykvVRG  120 (137)
                      +|++||+
T Consensus       120 rykvVrv  126 (142)
T 2xzm_L          120 RFKVVCV  126 (142)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            9999997

>3j20_N 30S ribosomal protein S12P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.9e-43  Score=273.18  Aligned_cols=97  Identities=37%  Similarity=0.632  Sum_probs=87.4

Q ss_pred             CCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEe-CCCCEEEEEecCCCC--CCCccceEEEec------CccCCC
Q psy2262          40 PRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGEGH--NLQEHNIVLCKV------GRVKDL  110 (137)
Q Consensus        40 k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrL-sngk~v~AyIPGeGh--nlqehs~VLVrG------Grv~DL  110 (137)
                      |+++|+++||++|||+++++++|||||||+|||||||| +||++|+||||||||  ||||||+|||+|      |+++||
T Consensus        40 K~~~l~g~pq~kGIvl~~~~~~pKkPNSA~RK~arV~L~kngk~vtAyIPg~Ghln~lqEh~~VLV~G~gg~~gg~v~Dl  119 (147)
T 3j20_N           40 KSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDI  119 (147)
T ss_dssp             HHSSSTTCSCEEEEEEEEEEEECCSSCCCEEEEEEEEETTTCCEEEEECCSSSGGGTCCTTCEEEEEECSCTTSCCCSSC
T ss_pred             ccchhhcCCccceEEEEEeecCCCCCCceeeeEEEEEEccCCcEEEEEcCCchhhcccccCCEEEEeeccCcCCCccCCC
Confidence            56899999999999999999999999999999999999 699999999999999  999999999999      679999


Q ss_pred             CCceEEEeeee-cCCcccccccccCCC
Q psy2262         111 PGVKIKCVRGV-YDLPHVVKKTQLTPG  136 (137)
Q Consensus       111 PGVkykvVRG~-~D~~gv~~Rk~~~~~  136 (137)
                      |||+|+|||.. .-|..+..-++++|-
T Consensus       120 PGVrykvVkv~~vsl~al~kgkkekp~  146 (147)
T 3j20_N          120 PGIRYKVVKVNRVSLKELVKGRKEKPR  146 (147)
T ss_dssp             SSCCEEEEEETTEEHHHHHSTTTCCCC
T ss_pred             CceeEEEEEECCeeHHHHHhcccccCC
Confidence            99999999984 344455566667663

>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.94  E-value=0.83  Score=33.15  Aligned_cols=47  Identities=13%  Similarity=0.161  Sum_probs=37.6

Q ss_pred             CccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCC---CCCccceEEEec
Q psy2262          48 PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGH---NLQEHNIVLCKV  104 (137)
Q Consensus        48 Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGh---nlqehs~VLVrG  104 (137)
                      -|.-|.|++..      ||.    -.+|+|.||.+++|+|||-=.   .+-+.|.|+|+=
T Consensus        15 ge~~g~V~~~l------gn~----~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~   64 (111)
T 2dgy_A           15 QQQIVRVLRTP------GNN----LHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDP   64 (111)
T ss_dssp             SCEEEEEEECC------SSS----EEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEE
T ss_pred             CeEEEEEEEeC------CCC----EEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEe
Confidence            46777777765      333    478999999999999999765   688999999984

>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5

Probab=80.75  E-value=1.6  Score=33.10  Aligned_cols=48  Identities=19%  Similarity=0.189  Sum_probs=37.6

Q ss_pred             CCccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCC---CCCccceEEEec
Q psy2262          47 KPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGH---NLQEHNIVLCKV  104 (137)
Q Consensus        47 ~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGh---nlqehs~VLVrG  104 (137)
                      .-|.-|.|++..      ||.    -.+|+|.||.+++|+|||-=.   .+-+.|.|+|.=
T Consensus        30 ege~~g~V~e~l------gn~----~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~   80 (143)
T 1d7q_A           30 DGQEYAQVIKML------GNG----RLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL   80 (143)
T ss_dssp             TTEEEEEEEEEC------SSS----EEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEEC
T ss_pred             CCEEEEEEEEEc------CCC----EEEEEeCCCCEEEEEecccceeeEEecCCCEEEEee
Confidence            346777777765      343    378999999999999999753   788999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	137
d2uubl1	118	b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus	6e-38

>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus thermophilus [TaxId: 274]} Length = 118

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S12
species: Thermus thermophilus [TaxId: 274]

 Score =  122 bits (309), Expect = 6e-38
 Identities = 56/110 (50%), Positives = 71/110 (64%), Gaps = 1/110 (0%)

Query: 24  TLWDMHMKGPHYKKRPPRQPLL-GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
           T+  +  KG    ++  + P L G PF +GV   V    PKKPNSA RK   VRL++G E
Sbjct: 2   TINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYE 61

Query: 83  MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
           + AYIPGEGHNLQEH++VL + GRVKDLPGV+   VRGVYD   V  + +
Sbjct: 62  VTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKK 111

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d2uubl1	118	Ribosomal protein S12 {Thermus thermophilus [TaxId	100.0
d1ah9a_	71	Translational initiation factor 1, IF1 {Escherichi	91.5
d1hr0w_	71	Translational initiation factor 1, IF1 {Escherichi	82.3

>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S12
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.1e-61  Score=358.70  Aligned_cols=112  Identities=49%  Similarity=0.744  Sum_probs=106.3

Q ss_pred             hhhHHHHhcCCCCCCCC-CCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCCCCCccceEE
Q psy2262          23 KTLWDMHMKGPHYKKRP-PRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVL  101 (137)
Q Consensus        23 ~TinQl~~~~~~~k~~~-k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGhnlqehs~VL  101 (137)
                      ||||||++.+|+++.++ +.++|++|||++|||+++++++|||||||+||||+|+|+||++|+||||||||||||||+||
T Consensus         1 PTinQL~rk~R~kk~~k~k~~aL~~~PqkkGvc~kv~~~~PKKPNSA~RKvarVrLsng~~v~AyIPG~GhnlqEHs~VL   80 (118)
T d2uubl1           1 PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVL   80 (118)
T ss_dssp             CCHHHHHHHCCCCCCCCCSCCCTTTCSCEEEEEEEEEEECCCTTCCSCEEEEEEEETTSCEEEEECCSSCCCCCTTCEEE
T ss_pred             CCHhHhcccCCCCCccCCCCcccccCCccceEEEEEEEeccCCCcceeeeEEEEEecCCeEEEEEcCCCCcCcccCCEEE
Confidence            69999999988766555 56899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCccCCCCCceEEEeeeecCCcccccccccC
Q psy2262         102 CKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQLT  134 (137)
Q Consensus       102 VrGGrv~DLPGVkykvVRG~~D~~gv~~Rk~~~  134 (137)
                      |||||++|||||+|++|||+|||++|.+|+++.
T Consensus        81 vrGGrv~DlPGVry~vvrG~~D~~~v~~Rk~~R  113 (118)
T d2uubl1          81 IRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSR  113 (118)
T ss_dssp             ECCCCCTTSTTCCEEBCTTSTTCCCCTTCCSST
T ss_pred             EeCCccccCCCcEEEEEeeeecccccccccccc
Confidence            999999999999999999999999999998864

>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translational initiation factor 1, IF1
species: Escherichia coli [TaxId: 562]

Probab=91.50  E-value=0.079  Score=34.26  Aligned_cols=46  Identities=28%  Similarity=0.412  Sum_probs=35.8

Q ss_pred             ccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCC--C--CCCccceEEEec
Q psy2262          49 FAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEG--H--NLQEHNIVLCKV  104 (137)
Q Consensus        49 q~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeG--h--nlqehs~VLVrG  104 (137)
                      +..|+|++.+      ||.    -.+|+|.||++++|+|||-=  +  .+.+.|.|+|+=
T Consensus         7 e~~G~V~e~l------g~~----~f~V~l~ng~~~~a~i~Gkmrk~ri~i~~GD~V~Vel   56 (71)
T d1ah9a_           7 EMQGTVLETL------PNT----MFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVEL   56 (71)
T ss_dssp             ECCEEEEEEC------SSS----EEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEE
T ss_pred             EEEEEEEEEc------CCC----EEEEEeCCCCEEEEEccchhheeEEEecCCCEEEEEE
Confidence            4557777765      343    37899999999999999975  2  788999998873

>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translational initiation factor 1, IF1
species: Escherichia coli [TaxId: 562]

Probab=82.30  E-value=0.065  Score=34.68  Aligned_cols=46  Identities=35%  Similarity=0.629  Sum_probs=34.5

Q ss_pred             ccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCC--C--CCCccceEEEec
Q psy2262          49 FAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEG--H--NLQEHNIVLCKV  104 (137)
Q Consensus        49 q~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeG--h--nlqehs~VLVrG  104 (137)
                      +..|+|++.+      ||.-    .+|+|.||++++|||||-=  +  .+.+.|.|+|+=
T Consensus         8 ~~~G~V~~~l------~~~~----f~V~l~ng~~~~a~i~GkmRk~ri~i~~GD~V~Vel   57 (71)
T d1hr0w_           8 RTEGVVTEAL------PNAT----FRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEI   57 (71)
T ss_dssp             CCEEECCCCC------TTTB----CCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEEC
T ss_pred             EEEEEEEEEC------CCCE----EEEEECCCCEEEEEecchhheeeEEecCCCEEEEEE
Confidence            3456665543      5554    5689999999999999864  2  788999999974